RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10810
(786 letters)
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 75.5 bits (186), Expect = 3e-16
Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 18/145 (12%)
Query: 513 QSHIKIYTDGS--KNEQGVGCALTIPEKNIAKRFGL-----NKNASIFHAELFALLQSLL 565
++ +YTDGS + A K + + E+ A L ++
Sbjct: 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVK 63
Query: 566 TIKELGACKALIITDSLSCLQAITNMFHE-----NPLVKRVQEELSSIEPSIEFLWCPSH 620
+LG K I+ D I N + + ++ F +H
Sbjct: 64 KASQLG-VKIRILHDY----AGIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAH 118
Query: 621 VGIAGNEAADEEAKQAIN-NDVTHH 644
G N+ D +AK A+ D+ HH
Sbjct: 119 SGNEFNDYVDMKAKSALGIRDLEHH 143
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 76.6 bits (188), Expect = 2e-14
Identities = 92/562 (16%), Positives = 170/562 (30%), Gaps = 215/562 (38%)
Query: 334 LDYGCPV----YNSASSRKESFP-IAPQ-TWDFSSDNE---------------ERYNKPF 372
L++ V + AS +E F I P+ T F++D+E +P
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 373 TMWELESVLKL---------LKSQSSPGPDEIHNQMLRHLPSNIRRKILSSNYIAKT--- 420
+ + + VL L L+ ++IH + L ++ + + K
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEG------NDIHA-LAAKLLQENDTTLVKTKELIKNYIT 128
Query: 421 -LSIENHPNIMRTLNPL-----------------------YV---RK-YE--NSNMKPTI 450
+ P ++ + L Y R Y+ + + I
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 451 GIQKKNLETIIPFN-----------NIM-----VKTTPKEPWLLKPPICDLSLSSYKKEN 494
+ L +I NI+ TP + +LL PI S
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI---SC------- 238
Query: 495 VPA-QMFQNEFKNKLAENFQSHIKIYTDGSKNEQGVGCALTIPEKNIAKRFGLNKNASIF 553
P + Q LA H + AK G
Sbjct: 239 -PLIGVIQ------LA-----HYVV---------------------TAKLLGFT------ 259
Query: 554 HAELFALLQSLLTIKELGACKALIITDSLS-------CLQAITNMFHENPLVKRVQEE-- 604
EL + L+ + G A+ I ++ S +AIT +F + R E
Sbjct: 260 PGELRSYLKGATGHSQ-GLVTAVAIAETDSWESFFVSVRKAITVLFF---IGVRCYEAYP 315
Query: 605 LSSIEPSIEFLWCPSHVGIAGNEAADEEAKQ---AINNDVTHHELSLDEIKTIIKKKYLE 661
+S+ PSI + + +E +I+N L+ +++ + Y+
Sbjct: 316 NTSLPPSI----------LEDSLENNEGVPSPMLSISN------LTQEQV-----QDYVN 354
Query: 662 EWNTTWLPKDR-----LMNYPMSPWNKMKRN----GPNE----FTLQLRPQTNEVCLMRM 708
+ N+ LP + L+N +N GP + L LR L +
Sbjct: 355 KTNSH-LPAGKQVEISLVN---GA-----KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 709 RVGHSK---------LT-----HSHLFRREDQPICDQCQEPMTIEHILISCRKMRFRPPS 754
R+ S+ L HSHL P D + + ++ + + ++ P
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLL----VPASDLINKDLVKNNVSFNAKDIQI--PV 459
Query: 755 FSTSNVSHILKDDEETLKEVFQ 776
+ T + S + + +
Sbjct: 460 YDTFDGSDLRVLSGSISERIVD 481
Score = 39.3 bits (91), Expect = 0.006
Identities = 47/288 (16%), Positives = 82/288 (28%), Gaps = 106/288 (36%)
Query: 451 GIQKKNLETIIPFNNIMVK----TTP--KEPWLLKPPICD--------LSLSSYKKENVP 496
G Q++ M T+ ++ W D S+ N P
Sbjct: 1625 GSQEQG----------MGMDLYKTSKAAQDVWNR----ADNHFKDTYGFSILDIVINN-P 1669
Query: 497 AQM---FQNEFKNKLAENFQSHI-KIYTDGSKNEQGVGCALTIPEKNIAKRFG-----LN 547
+ F E ++ EN+ + I + DG + + + E + + F L+
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN--EHSTSYTFRSEKGLLS 1727
Query: 548 K--NAS--IFHAE--LFALLQSLLTIKE--------LG-----ACKA--LIITDSLSCL- 585
+ E F L+S I LG A A + I + +
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF 1787
Query: 586 ---QAITN-------------MFHENPLVKRV-----QEELSSIEPSI-----EFLW--- 616
+ M NP RV QE L + + +
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINP--GRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 617 --CPSH--VGIAGNEAADEEAKQAINN------DVTH--HELSLDEIK 652
+ V AG+ A + +N D+ LSL+E++
Sbjct: 1846 YNVENQQYV-AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 36.2 bits (83), Expect = 0.059
Identities = 64/388 (16%), Positives = 104/388 (26%), Gaps = 177/388 (45%)
Query: 35 ESHLKEEENFTLKGFNTVGTYEVILRQLHKW-NMRGHLP--IFLSKYMDPRSFKIRLNNS 91
+ L E+ FT +G N + +W + P +L P S +
Sbjct: 200 RTTLDAEKVFT-QGLN-----------ILEWLENPSNTPDKDYLLSI--PISCPL----- 240
Query: 92 I----LSENFSIVC---GIPQG----------GVVSGTLFAIAINSITS----------- 123
I L+ ++ + G G G G + A+AI S
Sbjct: 241 IGVIQLA-HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 124 -----YI---------HPSLSSSLFVDD-----------FAIFTRDKNKEVLVSIMQESI 158
+I + SL S+ D +I + +E + Q+ +
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI--SNLTQEQV----QDYV 353
Query: 159 DTLSEDFSIVCGIPQGGVVSGTLFAIA-INSITSYI---HPSLSSSLFVDDFAIFTRDKN 214
+ + P G V I+ +N + + P SL
Sbjct: 354 NKTNSHL------PAGKQVE-----ISLVNGAKNLVVSGPPQ---SL------------- 386
Query: 215 KEVLVSIMQESIDKLENFSNDTGLFFSPQKSQC-VLFS-RKYKQLNTSINLNMYDTRIEV 272
L L +GL Q + FS RK K + R
Sbjct: 387 -YGLNL-------TLRKAKAPSGL------DQSRIPFSERKLK----------FSNR--- 419
Query: 273 VDTFKFLGLT--FDKKMTWKVHLKNLKQSCLSRSRILKILSKKAWAADRKMLIRIYKSLI 330
FL + F H L + I K L K + + K +
Sbjct: 420 -----FLPVASPF--------HSHLLVPA---SDLINKDLVKNNVSFNAKDI-------- 455
Query: 331 RSKLDYGCPVYNSASS---RKESFPIAP 355
PVY++ R S I+
Sbjct: 456 ------QIPVYDTFDGSDLRVLSGSISE 477
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.6 bits (177), Expect = 3e-13
Identities = 83/528 (15%), Positives = 162/528 (30%), Gaps = 142/528 (26%)
Query: 359 DFSSDNEERYNKPFTMWELESVLK-LLKSQSSPGPDEIHNQ------------MLRHLPS 405
D S E+ + F +++ + K +L + D I L
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEI---DHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 406 NIRRK----ILSSNY--IAKTLSIE-NHPNIMRTL-----NPLY-----VRKYENSNMKP 448
+ +K +L NY + + E P++M + + LY KY S ++P
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 449 TIGIQKKNLETIIPFNNIMV-------KTTPKEPWLL------KPPICD-------LSLS 488
+ +++ L + P N+++ KT W+ C L+L
Sbjct: 137 YLKLRQA-LLELRPAKNVLIDGVLGSGKT-----WVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 489 SYKKENVPAQMFQNEFKNKLAENFQSHIKIYTDGSKNEQGVGCALTIPE-KNIAKRFGLN 547
+ +M Q ++ N+ S +D S N + L I + +R +
Sbjct: 191 NCNSPETVLEMLQK-LLYQIDPNWTS----RSDHSSNIK-----LRIHSIQAELRRLLKS 240
Query: 548 KNASIFHAELFALL-----QSLLTIKELG-ACKALIIT------DSLSCLQA--ITNMFH 593
K + LL Q+ +CK L+ T D LS I+ H
Sbjct: 241 KP----YEN--CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 594 ENPLVKRVQEELSSIEPSIEFLWC-------------PSHVGIAGNEAADEEAK----QA 636
L + L ++L C P + I D A +
Sbjct: 295 SMTLTPDEVKSLLL-----KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 637 INNDVTHH--ELSLDEIKTIIKKKYLEEW----NTTWLPKDRLMNYPMSPWNKMKRNGPN 690
+N D E SL+ ++ +K + + +P L W + ++
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI----WFDVIKSDVM 405
Query: 691 EFTLQLRPQTNEVCLMRMRVGHSKLTHSHLFRREDQPICDQCQEPMTIEHILISCRKMR- 749
+L + + + S + + + + ++ +
Sbjct: 406 VVVNKLH---KYSLVEKQPKESTISIPSIYLE-----LKVKLENEYALHRSIVDHYNIPK 457
Query: 750 -FRPPSFSTSNV-----SHI---LKDDEETLK-EVFQFLKRN-NFLKN 786
F + SHI LK+ E + +F+ + + FL+
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Score = 66.0 bits (160), Expect = 4e-11
Identities = 82/518 (15%), Positives = 156/518 (30%), Gaps = 171/518 (33%)
Query: 7 WNVNGV--KNHLN--DLTIKLRDINPKIICIQESHLKEEENFTLKG-------------- 48
+N N V K +++ +KLR + E L+ +N + G
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQ------ALLE--LRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 49 ----------FN----TVGTY---EVILRQL--------HKWNMRGHLPI---------- 73
F + E +L L W R
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 74 -FLSKYMDPRSFKIRL-------NNSILSENFSIVCGIPQGGVVSGTLFAIAINSITSYI 125
L + + + ++ L N F++ C I L +T ++
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAW-NAFNLSCKI---------LLTTRFKQVTDFL 281
Query: 126 HPSLSSSLFVDDFAI-FTRDKNKEVLVSIMQESIDTLSEDFSIVCGI-PQGGVVS--GTL 181
+ ++ + +D ++ T D+ K +L+ + L + V P+ +S
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNPR--RLSIIAES 336
Query: 182 FAIAINSITSYIH------------------PSLSSSLFVDDFAIFTRDKN--KEVLVSI 221
+ + ++ H P+ +F D ++F + +L I
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPPSAHIPTILLSLI 395
Query: 222 --------MQESIDKLENFS-----NDTGLFFSPQ-----KSQCVLFSRKYKQLNTSINL 263
+ ++KL +S P K + L+ SI +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL----ENEYALHRSI-V 450
Query: 264 NMYDTRIEVVDTFKFLGLTFDKKMTWKV--HLKNLKQS---CLSRSRIL-------KI-L 310
+ Y+ + D+ + D+ + HLKN++ L R L KI
Sbjct: 451 DHYNIP-KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 311 SKKAWAADRKML-----IRIYKSLIRSKLDYGCPVYNSASSRKESFPIAPQTWDFSSDNE 365
AW A +L ++ YK I P Y R + + DF E
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDN----DPKY----ERLVNAIL-----DFLPKIE 556
Query: 366 ER-YNKPFTMWELESVLKL-LKSQSSPGPDEIHNQMLR 401
E +T +L++ L ++ +E H Q+ R
Sbjct: 557 ENLICSKYT-----DLLRIALMAEDEAIFEEAHKQVQR 589
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 65.6 bits (160), Expect = 1e-12
Identities = 33/138 (23%), Positives = 48/138 (34%), Gaps = 15/138 (10%)
Query: 518 IYTDGSKN-EQGVGCA--LTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACK 574
YTDGS ++G A E + L S AEL AL Q+L + K
Sbjct: 26 WYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEG---KK 82
Query: 575 ALIITDSLSCLQAI--TNMFHENPLVKRVQEELSSIE--PSIEFLWCPSHVG-----IAG 625
+ TDS + E + L ++ + + CP H G
Sbjct: 83 LNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARG 142
Query: 626 NEAADEEAKQAINNDVTH 643
N AD+ A++A V
Sbjct: 143 NRMADQAAREAAMKAVLE 160
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 53.7 bits (130), Expect = 1e-08
Identities = 34/142 (23%), Positives = 48/142 (33%), Gaps = 33/142 (23%)
Query: 518 IYTDGS-KNEQGVG--CALTIPEKNIAKRFGL---NKNASIFHAELFALLQSLLTIKELG 571
Y DG+ E +G +T + K EL A+ +L
Sbjct: 15 FYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQK------TELQAIYLALQDSG--- 65
Query: 572 ACKALIITDSLSCLQAITNMFH----------------ENPLVKRVQEELSSIEPSIEFL 615
+ I+TDS L IT H LV ++ E+L E +
Sbjct: 66 -LEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKE-KVYLA 123
Query: 616 WCPSHVGIAGNEAADEEAKQAI 637
W P+H GI GNE D+ I
Sbjct: 124 WVPAHKGIGGNEQVDKLVSAGI 145
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 51.8 bits (125), Expect = 5e-08
Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 24/147 (16%)
Query: 515 HIKIYTDGS-KNEQGVG--CALTI---PEKNIAKRFGLNKNASIFHAELFALLQSLLTIK 568
+ +YTDG + + + P + L + AE+ A +++ K
Sbjct: 7 FVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAK 66
Query: 569 ELGACKALIITDSLSCLQAITNMFH---------------ENP-LVKRVQEELSSIEPSI 612
K ++ T+S+ + ITN N ++ ++ I
Sbjct: 67 TQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMD--I 124
Query: 613 EFLWCPSHVGIAGNEAADEEAKQAINN 639
+++ P H G GNE AD A++
Sbjct: 125 QWMHVPGHSGFIGNEEADRLAREGAKQ 151
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 48.8 bits (117), Expect = 5e-07
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 16/135 (11%)
Query: 515 HIKIYTDGS----KNEQGVGCALTIPEKN--IAKRFGLNKNASIFHAELFALLQSLLTIK 568
+ I DG G G + + + +A+ A+ AE L+ L
Sbjct: 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAV 62
Query: 569 ELGACKALIITDSLSCLQAITNMF---HEN--PLVKRVQEELSSIEPSIEFLWCPSHVGI 623
+LGA +A ++ DS ++ ++ + H + L + Q S I + W P
Sbjct: 63 KLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFR-RINYEWVPRA--- 118
Query: 624 AGNEAADEEAKQAIN 638
N AD A A++
Sbjct: 119 -RNTYADRLANDAMD 132
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded
RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus
tokodaii} PDB: 3aly_A
Length = 149
Score = 47.3 bits (113), Expect = 2e-06
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 23/138 (16%)
Query: 516 IKIYTDGSKNEQ------GVGCALTIPEKNIAKRFGLNKNASIFH-----AELFALLQSL 564
I Y DG + G + + + I +GL + + AE L+ +
Sbjct: 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIE-GYGLAEKPFSINSTNNVAEYSGLICLM 60
Query: 565 LTIKELGACKALIITDSL---SCLQAITNMFHEN--PLVKRVQEELSSIEPSIEFLWCPS 619
T+ LG +I DS + + + PL ++ E + ++
Sbjct: 61 ETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLI------ 114
Query: 620 HVGIAGNEAADEEAKQAI 637
V N+ AD ++ A
Sbjct: 115 WVPREENKEADRLSRVAY 132
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding
protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Length = 245
Score = 46.9 bits (110), Expect = 9e-06
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 1 MVNILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLKEEENFTL 46
+LQ N+ K +L I+ I IQE ++ ++
Sbjct: 19 PYRVLQANLQRKKLATAELAIEAATRKAAIALIQEPYVGGAKSMKG 64
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of
RNA/DNA hybrid; 1.40A {Uncultured organism}
Length = 140
Score = 42.9 bits (102), Expect = 6e-05
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 18/139 (12%)
Query: 514 SHIKIYTDG--SKN--EQGVGCALTIPEKNIAKRF-GLNKNASIFHAELFALLQSLLTIK 568
+ I IYTDG N G+G +T + N + AE AL+++L ++
Sbjct: 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQ 61
Query: 569 ELGACKALIITDSLSCLQAITNMFHE---------NPLVKRVQEELSSIEPSIEFLWCPS 619
G + D ++ + + P +K +++ I+
Sbjct: 62 MFGD----KLVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFV 117
Query: 620 HVGIAGNEAADEEAKQAIN 638
H+ N ADE +AI+
Sbjct: 118 HIPREKNARADELVNEAID 136
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A
{Tribolium castaneum} PDB: 3du5_A 3du6_A
Length = 596
Score = 43.0 bits (100), Expect = 3e-04
Identities = 28/233 (12%), Positives = 59/233 (25%), Gaps = 34/233 (14%)
Query: 126 HPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIA 185
P L + + +K ++ I + + + + G+ QG +SG L +
Sbjct: 261 IPVLCKLIQSIPTHLLDSEKKNFIVDHISNQFVAFRRKIYKWNHGLLQGDPLSGCLCELY 320
Query: 186 I----NSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFS 241
+ S + VDD+ + +K ++ + +
Sbjct: 321 MAFMDRLYFSNLDKDAFIHRTVDDYFFCSPHPHKVYDFELLIKG-----------VYQVN 369
Query: 242 PQKSQCVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKKMTWKVHLKNLKQSCL 301
P K T N T D + G F+ T +V
Sbjct: 370 PTK--------------TRTN---LPTHRHPQDEIPYCGKIFNLT-TRQVRTLYKLPPNY 411
Query: 302 SRSRILKILSKKAWAADRKMLIRIYKSLIRSKLDYGCPVYNSASSRKESFPIA 354
K+ + +D R + + ++
Sbjct: 412 EIRHKFKLWNFNNQISDDNPA-RFLQKAMDFPFICNSFTKFEFNTVFNDQRTV 463
Score = 36.4 bits (83), Expect = 0.042
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 97 FSIVCGIPQGGVVSGTLFAIAI----NSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVS 152
+ G+ QG +SG L + + S + VDD+ + +K
Sbjct: 300 YKWNHGLLQGDPLSGCLCELYMAFMDRLYFSNLDKDAFIHRTVDDYFFCSPHPHKVYDFE 359
Query: 153 IMQESIDTLSEDFSIV 168
++ + + ++ +
Sbjct: 360 LLIKGVYQVNPTKTRT 375
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia
coli} SCOP: d.151.1.1
Length = 268
Score = 42.1 bits (100), Expect = 3e-04
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 7 WNVNGVKNHLNDLTIKLRDINPKIICIQESHLK-EEENFTLKGFNTVGTYEVI 58
+N+NG++ + L + P +I +QE K ++ F L+ +G Y V
Sbjct: 6 FNINGLRARPHQLEAIVEKHQPDVIGLQE--TKVHDDMFPLEEVAKLG-YNVF 55
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha
beta sandwich, gene regulation; 2.00A {Bombyx mori}
Length = 240
Score = 41.5 bits (96), Expect = 5e-04
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 3 NILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLKEEENFTLKGFNTVGTY 55
I Q N+ G ++ +L RD+ I+ +QE + G Y
Sbjct: 9 RIGQINLGGAEDATRELPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAGVY 61
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1
type, retrotransposition, retrotransposon, transferase;
1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Length = 238
Score = 41.4 bits (98), Expect = 6e-04
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 4 ILQWNVNGV-----KNHLNDLTIKLRDINPKIICIQESHLKEE--ENFTLKGFNT 51
IL N+NG+ ++ L ++ +P + CIQE+HL +KG+
Sbjct: 10 ILTLNINGLNSAIKRHRLASW---IKSQDPSVCCIQETHLTCRDTHRLKIKGWRK 61
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 41.7 bits (98), Expect = 8e-04
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 519 YTDGSKN-EQGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALI 577
Y DG+ N E +G A + K K L N + EL A+ +L + + I
Sbjct: 443 YVDGAANRETKLGKAGYVTNKGRQKVVPLT-NTTNQKTELQAIYLAL----QDSGLEVNI 497
Query: 578 ITDSLSCLQAITNM--FHENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADE 631
+TDS L I E+ LV ++ E+L E + W P+H GI GNE D+
Sbjct: 498 VTDSQYALGIIQAQPDKSESELVNQIIEQLIKKE-KVYLAWVPAHKGIGGNEQVDK 552
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 41.6 bits (98), Expect = 9e-04
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 555 AELFALLQSLLTIKELGACKALIITDSLSCLQAITNM--FHENPLVKRVQEELSSIEPSI 612
AEL A +L K II DS + + + E+ +V ++ EE+ E +I
Sbjct: 476 AELEAFAMAL----TDSGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIKKE-AI 530
Query: 613 EFLWCPSHVGIAGNEAADEEAKQAI 637
W P+H GI GN+ D Q I
Sbjct: 531 YVAWVPAHKGIGGNQEVDHLVSQGI 555
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease,
lyase; 1.7A {Archaeoglobus fulgidus}
Length = 257
Score = 40.2 bits (95), Expect = 0.001
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 1 MVNILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLK-EEENFTLKGFNTVGTYEVI 58
M+ I +NVN +++ L+ + L++ P I+C+QE K E F F+ +G Y V+
Sbjct: 1 MLKIATFNVNSIRSRLHIVIPWLKENKPDILCMQE--TKVENRKFPEADFHRIG-YHVV 56
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 38.3 bits (90), Expect = 0.002
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 19/143 (13%)
Query: 515 HIKIYTDGS-KNEQGVG--CALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELG 571
++I+T GS G G A+ + EL A + +L +KE
Sbjct: 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-- 61
Query: 572 ACKALIITDSLSCLQAITNMFH----------ENPLVKRV---QEELSSIEP-SIEFLWC 617
+ ++ TDS Q IT H + VK V Q +++ I++ W
Sbjct: 62 HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121
Query: 618 PSHVGIAGNEAADEEAKQAINND 640
H G NE ADE A+ A N
Sbjct: 122 KGHAGHPENERADELARAAAMNP 144
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase,
DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A
{Neisseria meningitidis}
Length = 256
Score = 39.4 bits (93), Expect = 0.002
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 7 WNVNGVKNHLNDLTIKLRDINPKIICIQESHLK-EEENFTLKGFNTVGTYEVILRQLHKW 65
WNVN + L + L D P I+ +QE LK +++ F +G + + +
Sbjct: 6 WNVNSLNVRLPQVQNLLADNPPDILVLQE--LKLDQDKFPAAALQMMG-WHCVWSGQKTY 62
Query: 66 N 66
N
Sbjct: 63 N 63
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 37.9 bits (89), Expect = 0.003
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 19/101 (18%)
Query: 556 ELFALLQSLLTIKELGACKALIITDSLSCLQAITNMFHEN------------PLVKRV-- 601
EL A ++ L +KE + + +DS + A+ + + P V+ +
Sbjct: 48 ELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKP-VENIDL 104
Query: 602 -QEELSSIEP-SIEFLWCPSHVGIAGNEAADEEAKQAINND 640
QE L + F H N ADE A+ AI +
Sbjct: 105 WQEILKLTTLHRVTFHKVKGHSDNPYNSRADELARLAIKEN 145
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 37.6 bits (88), Expect = 0.005
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 22/144 (15%)
Query: 515 HIKIYTDGS-KNEQGVG--CALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELG 571
+ ++TDG+ G G AL + G + EL A ++ L +KE
Sbjct: 8 RVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE-- 65
Query: 572 ACKALIITDSLSCLQAITNMFHEN------------PLVKRV---QEELSSIEP-SIEFL 615
C+ + TDS +A T + E P VK + L ++ P + F
Sbjct: 66 PCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKP-VKNRDLWEALLLAMAPHRVRFH 124
Query: 616 WCPSHVGIAGNEAADEEAKQAINN 639
+ H G NE D EA++ +
Sbjct: 125 FVKGHTGHPENERVDREARRQAQS 148
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 38.9 bits (90), Expect = 0.006
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 1 MVNILQWNVNG----VKNHLNDLTIKLRDINPKIICIQESHLKEEE 42
M + WNV G +K + + L + P ++C+QE+ L +E
Sbjct: 149 MYKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDE 194
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.007
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 24/52 (46%)
Query: 501 QNEFKNKLAENFQSHIKIYTDGSKNEQGVGCALTIPEKNIAKRFGLNKNASI 552
+ K KL Q+ +K+Y D S AL I A++
Sbjct: 19 KQALK-KL----QASLKLYADDS------APALAI-------------KATM 46
Score = 33.4 bits (75), Expect = 0.13
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 376 ELESVLKLLKSQSSPG 391
+L++ LKL S+P
Sbjct: 24 KLQASLKLYADDSAPA 39
Score = 28.4 bits (62), Expect = 5.5
Identities = 4/24 (16%), Positives = 14/24 (58%), Gaps = 8/24 (33%)
Query: 223 QESIDKLEN----FSNDTGLFFSP 242
++++ KL+ +++D+ +P
Sbjct: 19 KQALKKLQASLKLYADDS----AP 38
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 36.7 bits (86), Expect = 0.008
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 556 ELFALLQSLLTIKELGACKALIITDSLSCLQAITNMFH----------ENPLVKRV---Q 602
EL A + +L +KE CK ++ +DS Q I H VK V +
Sbjct: 50 ELLAPIVALEALKE--PCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWK 107
Query: 603 EELSSIEP-SIEFLWCPSHVGIAGNEAADEEAKQAINND 640
+ + I++ W H G A NE D+ A+ A +
Sbjct: 108 RLDKAAQLHQIDWRWVKGHAGHAENERCDQLARAAAEAN 146
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5'
exonuclease, AP endonuclease; HET: PG4; 1.23A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A*
3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Length = 265
Score = 36.4 bits (85), Expect = 0.027
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 1 MVNILQWNVNG----VKNHLNDLTIKLRDINPKIICIQESHLKEEE 42
++ I+ WNVNG + + P I+C+QE E+
Sbjct: 3 VLKIISWNVNGLRAVHRKGFLKW---FMEEKPDILCLQEIKAAPEQ 45
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease;
1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B*
1de9_A* 2o3c_A
Length = 285
Score = 35.7 bits (83), Expect = 0.049
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 1 MVNILQWNVNGVKNHLN-DLTIKLRDINPKIICIQESHLKEE 41
+ I WNV+G++ + +++ P I+C+QE+ E
Sbjct: 28 TLKIASWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSEN 69
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair,
endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens}
SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Length = 318
Score = 35.4 bits (82), Expect = 0.068
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 1 MVNILQWNVNG----VKNHLNDLTIKLRDINPKIICIQESHLKEE 41
+ I WNV+G +K D +++ P I+C+QE+ E
Sbjct: 61 TLKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETKCSEN 102
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA
repair, exonuclease, endonuclease; HET: BCN DIO GOL;
1.50A {Neisseria meningitidis}
Length = 259
Score = 33.3 bits (77), Expect = 0.21
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 1 MVNILQWNVNG----VKNHLNDLTIKLRDINPKIICIQESHLKEEE 42
M+ I+ NVNG K + + I+C+QE +E +
Sbjct: 1 MLKIISANVNGIRSAYKKGFYEY---IAASGADIVCVQELKAQEAD 43
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth
factor complex; NMR {Marsupenaeus japonicus} SCOP:
a.163.1.1
Length = 78
Score = 28.4 bits (63), Expect = 1.9
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 717 HSHLFRREDQPICDQCQEPMTIEHILISCRKMRFRPPSFSTSNVSHILKDDEETLKEVFQ 776
+ ++++ + +C+ C + + CR F F + +D+ E +
Sbjct: 14 NRDIYKKVVR-VCEDCTNIFRLPGLDGMCRNRCFYNEWFLICLKAANREDEIEKFRVWIS 72
Query: 777 FL 778
L
Sbjct: 73 IL 74
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A
{Zymomonas mobilis} PDB: 3owo_A*
Length = 383
Score = 30.2 bits (69), Expect = 2.6
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 23/72 (31%)
Query: 534 TIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITNMFH 593
IP N G +L +++ + G ALI++D+ +
Sbjct: 7 YIPFVNE---MGEG-----------SLEKAIKDLNGSGFKNALIVSDA---------FMN 43
Query: 594 ENPLVKRVQEEL 605
++ +VK+V + L
Sbjct: 44 KSGVVKQVADLL 55
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens
str}
Length = 353
Score = 30.3 bits (69), Expect = 2.8
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 567 IKELGACKALIITDSLSCLQAITNMFHENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGN 626
I+ LG +AL+++ + + + L + + F H +
Sbjct: 29 IRRLGLSRALVLSTP-----------QQKGDAEALASRLGRLAAGV-FSEAAMHTPVEVT 76
Query: 627 EAADEEAKQA 636
+ A E + A
Sbjct: 77 KTAVEAYRAA 86
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM
barrel, NADPH oxidoreductase, enone reductase; HET: FMN;
1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A*
4df2_A*
Length = 407
Score = 29.5 bits (67), Expect = 4.2
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 628 AADEEAKQAINNDVTHHELSLDEIKTIIKKKY 659
+D + A L+ E+K ++ + Y
Sbjct: 139 ESDAAKEAAEAVGNPVRALTTQEVKDLVYEAY 170
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 29.5 bits (65), Expect = 5.3
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 1/72 (1%)
Query: 664 NTTWLPKDR-LMNYPMSPWNKMKRNGPNEFTLQLRPQTNEVCLMRMRVGHSKLTHSHLFR 722
NT DR + PW + NE C V + + +
Sbjct: 293 NTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNV 352
Query: 723 REDQPICDQCQE 734
+ +C CQ
Sbjct: 353 YQGGGVCLDCQH 364
>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
multifunctional enzyme, lyase, polymorphism,
decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
sapiens}
Length = 205
Score = 28.8 bits (65), Expect = 6.0
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 131 SSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIAIN 187
S +++D I +R + + I+ ++ F VCG+P + T+
Sbjct: 29 SPIYIDLRGIVSRPRLLSQVADILFQTAQNAGISFDTVCGVPYTALPLATVICSTNQ 85
>3l51_B Structural maintenance of chromosomes protein 4; structural
maintenance of chromosomes (SMC), hinge domain, C cycle,
cell division, cytoplasm; 1.51A {Mus musculus}
Length = 166
Score = 28.3 bits (64), Expect = 7.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 759 NVSHILKDDEETLKEVFQFLKRNN 782
+ +I+ D +T +E FLK++N
Sbjct: 43 ALDYIVVDSIDTAQECVNFLKKHN 66
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase
domain C-TE orotate phosphoribosyltransferase domain,
transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Length = 453
Score = 28.9 bits (65), Expect = 7.5
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 129 LSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIAIN 187
SS +++D + T ++ + + F + G+P + + + +N
Sbjct: 283 KSSPIYIDLRRLVTYPAIMRLVAREYAKVLRHY--KFDRIAGLPYAALPIASAISNEMN 339
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 312
Score = 28.6 bits (63), Expect = 8.8
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 412 LSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSN-MKPTIGIQKKNLETIIPFNNIMVKT 470
+S++Y KT +IE P ++ + + +++N MK + + + +
Sbjct: 207 ISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKILLDKVRVVRQRRRKELQEEQEL 266
Query: 471 TPKEPW 476
W
Sbjct: 267 DGVGDW 272
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.396
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,634,464
Number of extensions: 690222
Number of successful extensions: 1716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1678
Number of HSP's successfully gapped: 52
Length of query: 786
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 685
Effective length of database: 3,881,772
Effective search space: 2659013820
Effective search space used: 2659013820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)