RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10810
(786 letters)
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 2
[TaxId: 11709]}
Length = 126
Score = 60.3 bits (145), Expect = 1e-11
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 7/122 (5%)
Query: 518 IYTDGS-KNEQGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKAL 576
YTDGS + G A + ++ K L + + AEL A +L K
Sbjct: 10 FYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTDSG----PKVN 64
Query: 577 IITDSLSCLQAITNMFHENPLVKRVQEELSSIEP-SIEFLWCPSHVGIAGNEAADEEAKQ 635
II DS + + + E+ Q I+ +I W P+H GI GN+ D Q
Sbjct: 65 IIVDSQYVMGIVASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQ 124
Query: 636 AI 637
I
Sbjct: 125 GI 126
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
[TaxId: 274]}
Length = 147
Score = 56.5 bits (135), Expect = 4e-10
Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 20/145 (13%)
Query: 513 QSHIKIYTDGS-KNEQGVG--CALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKE 569
+ + ++TDG+ G G AL + G + EL A ++ L +KE
Sbjct: 1 RKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE 60
Query: 570 LGACKALIITDSLSCLQAITNMFHENPLVKRVQEELSSIEPSIE---------------F 614
C+ + TDS +A T + E + + + + F
Sbjct: 61 --PCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRF 118
Query: 615 LWCPSHVGIAGNEAADEEAKQAINN 639
+ H G NE D EA++ +
Sbjct: 119 HFVKGHTGHPENERVDREARRQAQS 143
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 1
[TaxId: 11676]}
Length = 110
Score = 50.0 bits (119), Expect = 4e-08
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 518 IYTDGS-KNEQGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKAL 576
Y DG+ E +G A + + K L + + EL A+ +L + +
Sbjct: 11 FYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLAL----QDSGLEVN 65
Query: 577 IITDSLSCLQAITNMFHEN--PLVKRVQEELSSIEPSIEFLWCPSH 620
I+TDS L I ++ LV ++ E+L E + W P+H
Sbjct: 66 IVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKE-KVYLAWVPAH 110
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
562]}
Length = 152
Score = 46.2 bits (108), Expect = 2e-06
Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 21/143 (14%)
Query: 515 HIKIYTDGS-KNEQGVG--CALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELG 571
++I+T GS G G A+ + E + +
Sbjct: 2 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRME--LMAAIVALEALKE 59
Query: 572 ACKALIITDSLSCLQAITNMFH---------------ENPLVKRVQEELSSIEPSIEFLW 616
+ ++ TDS Q IT H +N + + + + I++ W
Sbjct: 60 HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL-GQHQIKWEW 118
Query: 617 CPSHVGIAGNEAADEEAKQAINN 639
H G NE ADE A+ A N
Sbjct: 119 VKGHAGHPENERADELARAAAMN 141
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1
retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId:
7091]}
Length = 228
Score = 42.7 bits (99), Expect = 8e-05
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 4 ILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLKEEENFTLKGFNTV 52
+LQ N+ K +L I+ I IQE ++ ++ V
Sbjct: 5 VLQANLQRKKLATAELAIEAATRKAAIALIQEPYVGGAKSMKGFRGVRV 53
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III
{Escherichia coli [TaxId: 562]}
Length = 268
Score = 42.4 bits (98), Expect = 1e-04
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 4 ILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLKEEENFTLKGFNTVGTYEVILRQLH 63
+ +N+NG++ + L + P +I +QE+ + ++ F L+ +G Y V
Sbjct: 3 FVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKV-HDDMFPLEEVAKLG-YNVFYHGQK 60
Query: 64 KWNMRGH 70
Sbjct: 61 GHYGVAL 67
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
transcriptase homolog {Human (Homo sapiens) [TaxId:
9606]}
Length = 236
Score = 40.1 bits (92), Expect = 6e-04
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 2 VNILQWNVNGVKNHLNDLTIK--LRDINPKIICIQESHLKEEE 42
+ IL N+NG+ + + + ++ +P + CIQE+HL +
Sbjct: 6 ITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRD 48
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 275
Score = 39.7 bits (91), Expect = 8e-04
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 4 ILQWNVNGVKNHLNDLTIK-LRDINPKIICIQESHLKEEENFTLKGFNTVGTYEVILRQL 62
I WNV+G++ + + +++ P I+C+QE+ E + G
Sbjct: 21 ICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKC-SENKLPAELQELPGLSHQYWSAP 79
Query: 63 HKWNMRGHLPIFLSKYMD 80
+ + +
Sbjct: 80 SDKEGYSGVGLLSRQCPL 97
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 34.6 bits (78), Expect = 0.028
Identities = 23/202 (11%), Positives = 53/202 (26%), Gaps = 9/202 (4%)
Query: 3 NILQWNVNGV----KNHLNDLTIK--LRDINPKIICIQESHLKEEENFTLKGFNTVGTYE 56
+ WN+ G ++ N + + I+ +QE+
Sbjct: 6 RVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIP 65
Query: 57 VILRQLHKWNMRGHLPIFLSKYMDPRSFKIRLNNSILS-ENFSIVCGIPQGGVVSGTLFA 115
V + + + + R+N +++S V + L
Sbjct: 66 V-RELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSPVRQGGRPLLG 124
Query: 116 IAINSITSY-IHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQG 174
I I + + H + + ++ + Q + DF+ +
Sbjct: 125 IRIGNDAFFTAHAIAMRNNDAPALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEM 184
Query: 175 GVVSGTLFAIAINSITSYIHPS 196
+ A I S + S
Sbjct: 185 NLTVPVRRASEIISPAAATQTS 206
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
lectularius) [TaxId: 79782]}
Length = 280
Score = 31.5 bits (70), Expect = 0.38
Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 4/131 (3%)
Query: 2 VNILQWNVNGVKNH--LNDLTIKLRDINPKI--ICIQESHLKEEENFTLKGFNTVGTYEV 57
V+ + WN + L +L P + + +Q + ++ +
Sbjct: 7 VHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLL 66
Query: 58 ILRQLHKWNMRGHLPIFLSKYMDPRSFKIRLNNSILSENFSIVCGIPQGGVVSGTLFAIA 117
+ K + L+ Y + + G V S T++
Sbjct: 67 TSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKR 126
Query: 118 INSITSYIHPS 128
+ TS +
Sbjct: 127 FSFTTSRMSDE 137
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B
{Haemophilus ducreyi [TaxId: 730]}
Length = 261
Score = 29.8 bits (65), Expect = 0.99
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 6/39 (15%)
Query: 3 NILQWNVNGVKNHLND------LTIKLRDINPKIICIQE 35
+ WN+ G + + I+ +QE
Sbjct: 6 KVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQE 44
>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 29.2 bits (65), Expect = 1.4
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 736 MTIEHILISCRKMRFRPPSFSTSNVSHILKDDEETLKEVFQFLKRNN 782
+ H + R +R + +T+++ + K + T E + ++ +N
Sbjct: 175 IDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVRHHN 221
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 28.1 bits (61), Expect = 3.3
Identities = 10/157 (6%), Positives = 31/157 (19%), Gaps = 17/157 (10%)
Query: 630 DEEAKQAINNDVTHHELSLDEIKTIIKKKYLEEWNTTWLPKDRLMNYPMSPWNKMKRNGP 689
+ + +++++ I E + +
Sbjct: 43 GDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVS 102
Query: 690 NEFTLQLRPQTNEVCLMRMRVGHSKLTHSHLFRREDQPICDQCQEPMTIEHILISCRKMR 749
+ L + + + D E +++ K
Sbjct: 103 QAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSK-- 160
Query: 750 FRPPSFSTSNVSHILKDDEETLKEVFQFLKRNNFLKN 786
+ + E+ L+ FL+
Sbjct: 161 ---------------QSVRSIVHEIILVLESQGFLER 182
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli
[TaxId: 562]}
Length = 385
Score = 28.1 bits (61), Expect = 4.2
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 567 IKELGACKALIITDSLSCLQAITNMFHENPLVKRVQEELSS 607
+K G KALI+TD + +V +V +++ +
Sbjct: 25 VKRRGYQKALIVTDK---------TLVQCGVVAKVTDKMDA 56
>d1j0ta_ a.163.1.1 (A:) Mlt-inhibiting hormone (MIH) {Kuruma prawn
(Marsupenaeus japonicus) [TaxId: 27405]}
Length = 78
Score = 25.9 bits (57), Expect = 5.0
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 720 LFRREDQPICDQCQEPMTIEHILISCRKMRFRPPSFSTSNVSHILKDDEETLKEVFQFLK 779
++++ + +C+ C + + CR F F + +D+ E + L
Sbjct: 17 IYKKVVR-VCEDCTNIFRLPGLDGMCRNRCFYNEWFLICLKAANREDEIEKFRVWISILN 75
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
{Bacillus cereus [TaxId: 1396]}
Length = 299
Score = 27.3 bits (58), Expect = 6.9
Identities = 12/149 (8%), Positives = 35/149 (23%), Gaps = 23/149 (15%)
Query: 2 VNILQWNVNGVKNHLND----------LTIKLRDINPKIICIQESHLKEEENFTLK---- 47
+ ++ NV + +L + N ++ + E + L
Sbjct: 4 LKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKK 63
Query: 48 ---------GFNTVGTYEVILRQLHKWNMRGHLPIFLSKYMDPRSFKIRLNNSILSENFS 98
G ++ ++ L +SK+ + +N S
Sbjct: 64 EYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNLS 123
Query: 99 IVCGIPQGGVVSGTLFAIAINSITSYIHP 127
+ + + + +
Sbjct: 124 NKGFVYTKIKKNDRFVHVIGTHLQAEDSM 152
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
(TM0820) {Thermotoga maritima [TaxId: 2336]}
Length = 398
Score = 27.3 bits (59), Expect = 7.2
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 567 IKELGACKALIITDSLSCLQAITNMFHENPLVKRVQEEL 605
IK G K L + +N + +V + L
Sbjct: 29 IKNAGIRKVLFLYGG--------GSIKKNGVYDQVVDSL 59
>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 25.9 bits (57), Expect = 7.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 755 FSTSNVSHILKDDEETLKEVFQFLKRNN 782
FS + +S D ET K ++ F++
Sbjct: 30 FSRAGISEAQLTDAETSKLIYDFIEDQG 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.396
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,895,684
Number of extensions: 138388
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 29
Length of query: 786
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 693
Effective length of database: 1,130,706
Effective search space: 783579258
Effective search space used: 783579258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)