BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10812
(723 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1
Length = 240
Score = 246 bits (627), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 167/226 (73%), Gaps = 3/226 (1%)
Query: 263 SALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEI 322
SALEIAEQ+T +D+ +FKSI EEF GQ W+K+EK + P+I+ T+ FN +S +A+EI
Sbjct: 5 SALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEI 64
Query: 323 LNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQ 382
+ ++S R IEKW+AVADI +CL+N+N VL I S++N S++FRLKKTW KVSK TK
Sbjct: 65 IRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKS 124
Query: 383 TYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVN 442
D+L+++V ++ F N + L++CDPPC+PYLGMYLT+ ++E P +T++G LVN
Sbjct: 125 LLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDG---LVN 181
Query: 443 FTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDM 488
F+K+R +++ IR+I ++Q T YKI+ PKV Y+LD S+++++E +
Sbjct: 182 FSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEESL 227
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 14/158 (8%)
Query: 458 RYQNTPYKIE----YNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVAN 513
+Y+ TPY ++ +N V+N+I S II +ED++ I ++ I N
Sbjct: 39 KYERTPYIMKTTKHFN-HVSNFI--ASEIIRNEDISARASAIEKWVAVA-DICRCLHNYN 94
Query: 514 YILDTSWIIEDEDVLHQKSMEIEPRTTGRPSCAQLPNLPLMVDAEEKFHNLKSKLQHCDP 573
+L+ + I + K ++ + + + L L +V ++ +F NL+ L++CDP
Sbjct: 95 AVLEITSSINRSAIFRLKKTWLK---VSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDP 151
Query: 574 PCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIR 611
PC+PYLGMYLT+L ++E P +T++G LV F+K+R
Sbjct: 152 PCVPYLGMYLTDLVFIEEGTPNYTEDG---LVNFSKMR 186
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 180/370 (48%), Gaps = 68/370 (18%)
Query: 100 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 159
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T A
Sbjct: 673 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGTVRG-KA 725
Query: 160 EYKAATQLTRMLTKEECTK-----HETNLQDLLAPPQVANKENIETLSALEIAEQMTYID 214
K +T+++ +++ + H Q +PP V +
Sbjct: 726 MKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTV---------------------E 762
Query: 215 YHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYI 274
+HI ++ HI F ++ TL +EIA Q+T +
Sbjct: 763 WHI--------------------SRPGHIETF-----------DLLTLHPIEIARQLTLL 791
Query: 275 DYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHV 334
+ ++++++ E +G W K +K +P+++ + ++ I+ NL +RV V
Sbjct: 792 ESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAV 851
Query: 335 IEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAE 394
+ + I + + + LNNFNGVL ++SAMN+S V+RL T++++ K+ +E ++ +E
Sbjct: 852 VSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SE 909
Query: 395 ENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIR 454
+++ + +KL+ +PPC+P+ G+YLT + +E P K L+NF+K R++A
Sbjct: 910 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITG 969
Query: 455 DITRYQNTPY 464
+I +YQN PY
Sbjct: 970 EIQQYQNQPY 979
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 557 AEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR 612
+E+ + +KL+ +PPC+P+ G+YLT + +E P K L+ F+K R+
Sbjct: 908 SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRK 963
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 665 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCT 718
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T
Sbjct: 673 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT 720
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 180/370 (48%), Gaps = 68/370 (18%)
Query: 100 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 159
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T A
Sbjct: 108 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGTVRG-KA 160
Query: 160 EYKAATQLTRMLTKEECTK-----HETNLQDLLAPPQVANKENIETLSALEIAEQMTYID 214
K +T+++ +++ + H Q +PP V +
Sbjct: 161 MKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTV---------------------E 197
Query: 215 YHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYI 274
+HI ++ HI F ++ TL +EIA Q+T +
Sbjct: 198 WHI--------------------SRPGHIETF-----------DLLTLHPIEIARQLTLL 226
Query: 275 DYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHV 334
+ ++++++ E +G W K +K +P+++ + ++ I+ NL +RV V
Sbjct: 227 ESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAV 286
Query: 335 IEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAE 394
+ + I + + + LNNFNGVL ++SAMN+S V+RL T++++ K+ +E ++ +E
Sbjct: 287 VSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SE 344
Query: 395 ENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIR 454
+++ + +KL+ +PPC+P+ G+YLT + +E P K L+NF+K R++A
Sbjct: 345 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITG 404
Query: 455 DITRYQNTPY 464
+I +YQN PY
Sbjct: 405 EIQQYQNQPY 414
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 557 AEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR 612
+E+ + +KL+ +PPC+P+ G+YLT + +E P K L+ F+K R+
Sbjct: 343 SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRK 398
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 665 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCT 718
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T
Sbjct: 108 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT 155
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
(Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 180/370 (48%), Gaps = 68/370 (18%)
Query: 100 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 159
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T A
Sbjct: 114 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGTVRG-KA 166
Query: 160 EYKAATQLTRMLTKEECTK-----HETNLQDLLAPPQVANKENIETLSALEIAEQMTYID 214
K +T+++ +++ + H Q +PP V +
Sbjct: 167 MKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTV---------------------E 203
Query: 215 YHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYI 274
+HI ++ HI F ++ TL +EIA Q+T +
Sbjct: 204 WHI--------------------SRPGHIETF-----------DLLTLHPIEIARQLTLL 232
Query: 275 DYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHV 334
+ ++++++ E +G W K +K +P+++ + ++ I+ NL +RV V
Sbjct: 233 ESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAV 292
Query: 335 IEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAE 394
+ + I + + + LNNFNGVL ++SAMN+S V+RL T++++ K+ +E ++ +E
Sbjct: 293 VSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SE 350
Query: 395 ENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIR 454
+++ + +KL+ +PPC+P+ G+YLT + +E P K L+NF+K R++A
Sbjct: 351 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITG 410
Query: 455 DITRYQNTPY 464
+I +YQN PY
Sbjct: 411 EIQQYQNQPY 420
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 557 AEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR 612
+E+ + +KL+ +PPC+P+ G+YLT + +E P K L+ F+K R+
Sbjct: 349 SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRK 404
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 665 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCT 718
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T
Sbjct: 114 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT 161
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 180/370 (48%), Gaps = 68/370 (18%)
Query: 100 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 159
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T A
Sbjct: 106 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGTVRG-KA 158
Query: 160 EYKAATQLTRMLTKEECTK-----HETNLQDLLAPPQVANKENIETLSALEIAEQMTYID 214
K +T+++ +++ + H Q +PP V +
Sbjct: 159 MKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTV---------------------E 195
Query: 215 YHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYI 274
+HI ++ HI F ++ TL +EIA Q+T +
Sbjct: 196 WHI--------------------SRPGHIETF-----------DLLTLHPIEIARQLTLL 224
Query: 275 DYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHV 334
+ ++++++ E +G W K +K +P+++ + ++ I+ NL +RV V
Sbjct: 225 ESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAV 284
Query: 335 IEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAE 394
+ + I + + + LNNFNGVL ++SAMN+S V+RL T++++ K+ +E ++ +E
Sbjct: 285 VSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SE 342
Query: 395 ENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIR 454
+++ + +KL+ +PPC+P+ G+YLT + +E P K L+NF+K R++A
Sbjct: 343 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITG 402
Query: 455 DITRYQNTPY 464
+I +YQN PY
Sbjct: 403 EIQQYQNQPY 412
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 557 AEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR 612
+E+ + +KL+ +PPC+P+ G+YLT + +E P K L+ F+K R+
Sbjct: 341 SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRK 396
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 665 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCT 718
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T
Sbjct: 106 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT 153
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 180/370 (48%), Gaps = 68/370 (18%)
Query: 100 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 159
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T A
Sbjct: 476 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGTVRG-KA 528
Query: 160 EYKAATQLTRMLTKEECTK-----HETNLQDLLAPPQVANKENIETLSALEIAEQMTYID 214
K +T+++ +++ + H Q +PP V +
Sbjct: 529 MKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTV---------------------E 565
Query: 215 YHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYI 274
+HI ++ HI F ++ TL +EIA Q+T +
Sbjct: 566 WHI--------------------SRPGHIETF-----------DLLTLHPIEIARQLTLL 594
Query: 275 DYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHV 334
+ ++++++ E +G W K +K +P+++ + ++ I+ NL +RV V
Sbjct: 595 ESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAV 654
Query: 335 IEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAE 394
+ + I + + + LNNFNGVL ++SAMN+S V+RL T++++ K+ +E ++ +E
Sbjct: 655 VSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SE 712
Query: 395 ENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIR 454
+++ + +KL+ +PPC+P+ G+YLT + +E P K L+NF+K R++A
Sbjct: 713 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITG 772
Query: 455 DITRYQNTPY 464
+I +YQN PY
Sbjct: 773 EIQQYQNQPY 782
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 557 AEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR 612
+E+ + +KL+ +PPC+P+ G+YLT + +E P K L+ F+K R+
Sbjct: 711 SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRK 766
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 665 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCT 718
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T
Sbjct: 476 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT 523
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 180/370 (48%), Gaps = 68/370 (18%)
Query: 100 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 159
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T A
Sbjct: 108 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGTVRG-KA 160
Query: 160 EYKAATQLTRMLTKEECTK-----HETNLQDLLAPPQVANKENIETLSALEIAEQMTYID 214
K +T+++ +++ + H Q +PP V +
Sbjct: 161 MKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTV---------------------E 197
Query: 215 YHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYI 274
+HI ++ HI F ++ TL +EIA Q+T +
Sbjct: 198 WHI--------------------SRPGHIETF-----------DLLTLHPIEIARQLTLL 226
Query: 275 DYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHV 334
+ ++++++ E +G W K +K +P+++ + ++ I+ NL +RV V
Sbjct: 227 ESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAV 286
Query: 335 IEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAE 394
+ + I + + + LNNFNGVL ++SAMN+S V+RL T++++ K+ +E ++ +E
Sbjct: 287 VSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SE 344
Query: 395 ENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIR 454
+++ + +KL+ +PPC+P+ G+YLT + +E P K L+NF+K R++A
Sbjct: 345 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITG 404
Query: 455 DITRYQNTPY 464
+I +YQN PY
Sbjct: 405 EIQQYQNQPY 414
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 557 AEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR 612
+E+ + +KL+ +PPC+P+ G+YLT + +E P K L+ F+K R+
Sbjct: 343 SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRK 398
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 665 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCT 718
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T
Sbjct: 108 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT 155
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 180/370 (48%), Gaps = 68/370 (18%)
Query: 100 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 159
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T A
Sbjct: 476 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGTVRG-KA 528
Query: 160 EYKAATQLTRMLTKEECTK-----HETNLQDLLAPPQVANKENIETLSALEIAEQMTYID 214
K +T+++ +++ + H Q +PP V +
Sbjct: 529 MKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTV---------------------E 565
Query: 215 YHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYI 274
+HI ++ HI F ++ TL +EIA Q+T +
Sbjct: 566 WHI--------------------SRPGHIETF-----------DLLTLHPIEIARQLTLL 594
Query: 275 DYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHV 334
+ ++++++ E +G W K +K +P+++ + ++ I+ NL +RV V
Sbjct: 595 ESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAV 654
Query: 335 IEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAE 394
+ + I + + + LNNFNGVL ++SAMN+S V+RL T++++ K+ +E ++ +E
Sbjct: 655 VSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SE 712
Query: 395 ENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIR 454
+++ + +KL+ +PPC+P+ G+YLT + +E P K L+NF+K R++A
Sbjct: 713 DHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITG 772
Query: 455 DITRYQNTPY 464
+I +YQN PY
Sbjct: 773 EIQQYQNQPY 782
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 557 AEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR 612
+E+ + +KL+ +PPC+P+ G+YLT + +E P K L+ F+K R+
Sbjct: 711 SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRK 766
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 665 EVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCT 718
E++ RKE + +RVLNV RHW+ H DF +D L L+ +EE + T
Sbjct: 476 ELKRFRKEYI--QPVQLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT 523
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
Guanine- Nucleotide Exchange Factor Ralgps1a
Length = 271
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 5/196 (2%)
Query: 266 EIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNR 325
E A Q+T +D +FK+I+ EE W K EK + AP++V FT+RFN +S V EIL
Sbjct: 35 EFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTA 94
Query: 326 SNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYD 385
L R ++ ++ +A L LNN + +++++SA+ ++ +FRL KTW +++ K T++
Sbjct: 95 QTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFE 154
Query: 386 ELRQVVDAEENFHNFKSKLQHCD-PPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFT 444
+L ++ E+N+ + ++ P IPYLG+YL + +D YP + + N
Sbjct: 155 KLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSAYPA----SGSIMENEQ 210
Query: 445 KIRRMANTIRDITRYQ 460
+ +M N +R I Q
Sbjct: 211 RSNQMNNILRIIADLQ 226
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 574 PCIPYLGMYLTELATLDEVYPT 595
P IPYLG+YL +L +D YP
Sbjct: 180 PSIPYLGIYLLDLIYIDSAYPA 201
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 16/230 (6%)
Query: 248 QRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLF 307
Q T E +S+ ++A QMT D+ +F + E + + + ++ LF
Sbjct: 745 QEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLF 804
Query: 308 TQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVF 367
+RFN + V E+ S LS+RV +++K+I +A K N N I+ ++N +V
Sbjct: 805 LRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVS 864
Query: 368 RLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDE 427
RL TW+K+ K+ Y E ++D N ++ +PP IP++ + + +
Sbjct: 865 RLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDM----- 919
Query: 428 EYPTFTKEGET----NLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVA 473
TFT EG NLVNF K+R +ANT R + Y++ P +NP A
Sbjct: 920 ---TFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQP----FNPDAA 962
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 16/230 (6%)
Query: 248 QRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLF 307
Q T E +S+ ++A QMT D+ +F + E + + + ++ LF
Sbjct: 745 QEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLF 804
Query: 308 TQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVF 367
+RFN + V E+ S LS+RV +++K+I +A K N N I+ ++N +V
Sbjct: 805 LRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVS 864
Query: 368 RLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDE 427
RL TW+K+ K+ Y E ++D N ++ +PP IP++ + + +
Sbjct: 865 RLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDM----- 919
Query: 428 EYPTFTKEGET----NLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVA 473
TFT EG NLVNF K+R +ANT R + Y++ P +NP A
Sbjct: 920 ---TFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQP----FNPDAA 962
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 16/226 (7%)
Query: 252 TVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRF 311
T E +S+ ++A QMT D+ +F + E + + + ++ LF +RF
Sbjct: 444 TTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRF 503
Query: 312 NTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKK 371
N + V E+ S LS+RV +++K+I +A K N N I+ ++N +V RL
Sbjct: 504 NEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLAL 563
Query: 372 TWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPT 431
TW+K+ K+ Y E ++D N ++ +PP IP++ + + + T
Sbjct: 564 TWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDM--------T 615
Query: 432 FTKEGET----NLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVA 473
FT EG NLVNF K+R +ANT R + Y++ P +NP A
Sbjct: 616 FTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQP----FNPDAA 657
>pdb|3D3Y|A Chain A, Crystal Structure Of A Conserved Protein From Enterococcus
Faecalis V583
Length = 425
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 123 RHW--ISKHTQD--FIQDKELRYMTLEFLEEIVCTPNLLPAEYKAAT 165
+HW IS + + ++QD ++ ++FL+EI+ PN+ +++A T
Sbjct: 85 QHWFNISXNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAET 131
>pdb|4DVG|B Chain B, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 353
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 308 TQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVF 367
+++F S ++ N ++++ L R V +I + + + N N I + +S +
Sbjct: 234 SEKFKHASLVLINNLIDQPELEHRXDVRNSFIEIGLVNELENXKNTEWXKIDKIKDS-IN 292
Query: 368 RLKKTWDKVSKTTKQTYDELRQVVDAE 394
+W++ K + +D+L+QVVD E
Sbjct: 293 DFFDSWEEDKKEVESRFDDLKQVVDFE 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,532,409
Number of Sequences: 62578
Number of extensions: 703069
Number of successful extensions: 1706
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1628
Number of HSP's gapped (non-prelim): 57
length of query: 723
length of database: 14,973,337
effective HSP length: 106
effective length of query: 617
effective length of database: 8,340,069
effective search space: 5145822573
effective search space used: 5145822573
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)