Query psy10812
Match_columns 723
No_of_seqs 475 out of 1372
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 19:06:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00147 RasGEF Guanine nucl 100.0 5.8E-52 1.3E-56 430.3 21.9 239 259-539 1-242 (242)
2 cd00155 RasGEF Guanine nucleot 100.0 2.6E-50 5.5E-55 416.4 22.9 217 259-478 1-220 (237)
3 PF00617 RasGEF: RasGEF domain 100.0 6.9E-43 1.5E-47 347.4 11.5 186 260-448 1-188 (188)
4 KOG3629|consensus 100.0 2.6E-41 5.7E-46 364.2 23.2 351 49-478 67-454 (728)
5 KOG2378|consensus 100.0 1.1E-40 2.3E-45 354.7 22.1 243 256-539 330-573 (573)
6 KOG3542|consensus 100.0 1.7E-40 3.8E-45 363.6 15.4 271 258-540 863-1150(1283)
7 KOG3417|consensus 100.0 2.4E-32 5.3E-37 328.0 17.2 211 255-465 207-420 (840)
8 KOG3541|consensus 100.0 1.6E-29 3.6E-34 267.3 20.0 235 260-541 206-464 (477)
9 KOG3417|consensus 99.6 5.9E-15 1.3E-19 178.3 13.8 206 263-477 609-815 (840)
10 smart00147 RasGEF Guanine nucl 99.6 1.6E-16 3.5E-21 165.1 -0.5 109 546-659 125-242 (242)
11 KOG2378|consensus 99.5 2.3E-15 5.1E-20 161.9 2.2 108 546-659 457-573 (573)
12 KOG3629|consensus 99.5 5.5E-15 1.2E-19 161.3 1.7 102 574-680 387-495 (728)
13 cd00155 RasGEF Guanine nucleot 99.4 1.4E-14 3E-19 150.0 -0.5 104 546-654 125-237 (237)
14 PF00617 RasGEF: RasGEF domain 99.0 2.3E-11 4.9E-16 121.0 -4.8 60 547-609 125-185 (188)
15 KOG3542|consensus 98.5 2.2E-08 4.8E-13 112.5 0.5 78 546-629 986-1065(1283)
16 smart00229 RasGEFN Guanine nuc 98.2 3.5E-06 7.5E-11 79.0 7.8 44 110-153 67-110 (127)
17 cd06224 REM Guanine nucleotide 98.0 2.1E-05 4.5E-10 72.8 8.7 87 62-153 17-105 (122)
18 PF00618 RasGEF_N: RasGEF N-te 97.6 6.5E-05 1.4E-09 67.9 4.2 73 70-146 32-104 (104)
19 KOG3541|consensus 97.1 8E-05 1.7E-09 80.9 -1.2 110 546-660 338-463 (477)
20 smart00229 RasGEFN Guanine nuc 96.7 0.0021 4.5E-08 60.1 4.6 44 677-720 69-112 (127)
21 cd06224 REM Guanine nucleotide 94.2 0.049 1.1E-06 50.2 4.0 41 679-719 66-106 (122)
22 PF00618 RasGEF_N: RasGEF N-te 84.5 0.89 1.9E-05 40.8 3.1 30 682-711 75-104 (104)
23 COG4802 FtrB Ferredoxin-thiore 24.6 70 0.0015 29.3 2.8 21 566-586 60-91 (110)
No 1
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=100.00 E-value=5.8e-52 Score=430.35 Aligned_cols=239 Identities=37% Similarity=0.722 Sum_probs=225.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCCCCh-hHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHHH
Q psy10812 259 IETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAP-HIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEK 337 (723)
Q Consensus 259 l~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~~p-ni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I~k 337 (723)
+++++|.|||+|||++|+++|++|++.||++..|.+.+....+| ||.+++++||.++.||+.+||.++++++|++++++
T Consensus 1 ~l~~~~~eiA~QlTl~d~~~f~~I~~~El~~~~~~~~~~~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~~~i~~ 80 (242)
T smart00147 1 LLLLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSKKSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRAELLSK 80 (242)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999887777788 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcC-CCCccccc
Q psy10812 338 WIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCD-PPCIPYLG 416 (723)
Q Consensus 338 fI~IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~-~P~IPflG 416 (723)
||+||.+|+++|||||++||++||++++|+||++||+.|++++++.|++|++++++++||++||+.++++. +|||||+|
T Consensus 81 fI~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~lg 160 (242)
T smart00147 81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSCNLPPCVPFLG 160 (242)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred cchhchhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCCCCCC-hHHHHHHhccCCccchhhhhhHHHhh
Q psy10812 417 MYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYN-PKVANYILDTSWIIEDEDMANTIRDI 495 (723)
Q Consensus 417 ~~L~DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~-~~i~~~L~~~~~~~~~~~~~~~~~~l 495 (723)
+||+||+++++|+|++.++| +|||.|+++++++|.++..||+.+|+|.++ +.+|.||....
T Consensus 161 ~~l~dl~~~~~~~~~~~~~~---~iNf~k~~~i~~~i~~~~~~Q~~~y~~~~~~~~iq~~l~~~~--------------- 222 (242)
T smart00147 161 VLLKDLTFIDEGNPDFLENG---LVNFEKRRKIAEILREIRQLQSQPYNLRPNRSDIQSLLQQLL--------------- 222 (242)
T ss_pred HHHHHHHHHHccCcccccCC---cccHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHH---------------
Confidence 99999999999999999888 999999999999999999999999999999 99999986320
Q ss_pred hhccCCCcccccchhhHhhhhhcCccccchhHHhhccccccCCC
Q psy10812 496 TQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRT 539 (723)
Q Consensus 496 ~~~~~~~~~i~~~~~~~~yi~~~~~~i~~ed~Ly~lSl~iEPR~ 539 (723)
....++|++|++|+++|||.
T Consensus 223 ------------------------~~~~~~~~~~~~S~~~EP~~ 242 (242)
T smart00147 223 ------------------------DHLDEEEELYQLSLKIEPRV 242 (242)
T ss_pred ------------------------hhcCCHHHHHHHHHHhCCCC
Confidence 01234668999999999983
No 2
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=100.00 E-value=2.6e-50 Score=416.45 Aligned_cols=217 Identities=37% Similarity=0.714 Sum_probs=209.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCC-CCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHHH
Q psy10812 259 IETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKL-TKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEK 337 (723)
Q Consensus 259 l~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~-~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I~k 337 (723)
+++++|.|||+|||++|+++|++|+|.||++..|.+..+. ..+|+|.+++++||.++.||+.+||.++++++|++++++
T Consensus 1 ~l~~d~~eiA~QlTl~~~~lf~~I~~~El~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~ 80 (237)
T cd00155 1 FLSLDPKELAEQLTLLDFELFRKIEPFELLGSLWSKKDKNIHLSPNLERFIERFNNLSNWVASEILLCTNPKKRARLLSK 80 (237)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999987655 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhc--CCCCcccc
Q psy10812 338 WIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHC--DPPCIPYL 415 (723)
Q Consensus 338 fI~IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~--~~P~IPfl 415 (723)
||+||.+|+++||||+++||++||++++|.||++||+.|+++.++.|++|..++++++||++||+.++++ .+|||||+
T Consensus 81 ~I~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~~~p~IP~l 160 (237)
T cd00155 81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEVLSSKLKKLFEELEELVDPSRNFKNYRKLLKSVGPNPPCVPFL 160 (237)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCccchhHHHHHHHCCHHHHHHHHHHHHHhCcHhhHHHHHHHHHhcCCCCCCeeeh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred ccchhchhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHhc
Q psy10812 416 GMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILD 478 (723)
Q Consensus 416 G~~L~DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~~~i~~~L~~ 478 (723)
|+||+||+++++|+|++.++| +|||.|+++++++|.++.+||+.+|.+.+++.|++||.+
T Consensus 161 g~~l~dl~~~~e~~~~~~~~~---~iN~~K~~~i~~~i~~~~~~Q~~~Y~~~~~~~iq~~l~~ 220 (237)
T cd00155 161 GVYLKDLTFLHEGNPDFLEGN---LVNFEKRRKIAEILREIRQLQSNSYELNRDEDILAFLWK 220 (237)
T ss_pred hHHHHHHHHHHccCCccCcCC---CccHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHh
Confidence 999999999999999998767 999999999999999999999999999999999999974
No 3
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=100.00 E-value=6.9e-43 Score=347.37 Aligned_cols=186 Identities=40% Similarity=0.779 Sum_probs=172.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCC-CChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHHHH
Q psy10812 260 ETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLT-KAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKW 338 (723)
Q Consensus 260 ~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~-~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I~kf 338 (723)
++++|.+||+|||++|+++|++|+|.|++...|.+.+... .+|++..++++||.+++||+.+||.++++++|+++|++|
T Consensus 1 ~~~~~~~iA~qlt~~~~~lf~~I~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~~ 80 (188)
T PF00617_consen 1 LDIDPEEIARQLTLLDSELFRKIKPSELLYSVWSKSDKKENQSPNINKLIDRFNKLSNWVISEILSQPDPEERAKIIEKF 80 (188)
T ss_dssp -CS-HHHHHHHHHHHHHHHHHTSSHHHHHGGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCCccChhHHHHHHHhhhHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4789999999999999999999999999999998743222 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcCC-CCcccccc
Q psy10812 339 IAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDP-PCIPYLGM 417 (723)
Q Consensus 339 I~IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~~-P~IPflG~ 417 (723)
|+||.+|+++|||||++||++||++++|.||++||+.++++.++.|++|+.++++++||++||++++++.+ |||||+|+
T Consensus 81 I~va~~l~~l~Nf~s~~aI~~~L~s~~i~rL~~tw~~l~~~~~~~~~~l~~l~~~~~~~~~yr~~~~~~~~~~~IP~lg~ 160 (188)
T PF00617_consen 81 IQVAKKLYELGNFNSLMAILSALNSSSIQRLKKTWKSLSKKSKKTFEELESLFSPSNNYKNYREALKKCNPQPCIPFLGI 160 (188)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHTSHHHHT-HHHHHTSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTSTSSSSB--HHH
T ss_pred HhHHHHHHHhcCchHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHhhcccchhhHHHHHhhcccccCceecccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887 99999999
Q ss_pred chhchhhhcccCCcccCCCCcccccHHHHHH
Q psy10812 418 YLTEFARLDEEYPTFTKEGETNLVNFTKIRR 448 (723)
Q Consensus 418 ~L~DL~fi~egnp~~~~dg~~~LINf~K~r~ 448 (723)
|++||+++++|+|+++++| +|||.|+|+
T Consensus 161 ~l~dl~~~~~~~~~~~~~~---liN~~K~r~ 188 (188)
T PF00617_consen 161 FLKDLIFIEEGNPDFIDDG---LINFEKCRK 188 (188)
T ss_dssp HHHHHHHHHHHS-SECTTT---CEEHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCc---cCCcccccC
Confidence 9999999999999999887 999999985
No 4
>KOG3629|consensus
Probab=100.00 E-value=2.6e-41 Score=364.23 Aligned_cols=351 Identities=25% Similarity=0.394 Sum_probs=270.1
Q ss_pred cccceE-------Eechhhcccchhhhc--cccccchhhHHH-HHHHHhcCCCCCCCCchHHhhhhhccchhcchhhhHH
Q psy10812 49 SKAGVV-------ITSFRKSQRSLLLIF--STRSSTSTAATA-FAIATSASSNPRDISPVEEVRNKRKESVLSTATTMRV 118 (723)
Q Consensus 49 ~~~~~~-------~~~~~~~~~~~~~~~--~~r~~~~~~a~a-f~i~t~~~~~~~~~~~~~~~~~~rke~v~~~~iqlRV 118 (723)
.+||.| +++.-+-+-+..-+| +-|++|||+++. .....+++-+. .+..++.. -+|.-|
T Consensus 67 ikAGTlE~LVe~Ll~~~~~~D~~~~svFlaTyR~Ftst~~vL~llldRye~e~s--~~~ses~~----------~v~naI 134 (728)
T KOG3629|consen 67 IKAGTLERLVECLLGSDDMMDSRHFSVFLATYRSFTSTAIVLDLLLDRYELENS--VNGSESAL----------LVQNAI 134 (728)
T ss_pred hhcchHHHHHHHHhcCCCCcchhHHHHHHHHhhcccccHHHHHHHHHHHHhhhc--CCchHHHH----------HHHHHH
Confidence 466753 566666555555454 458999988876 34444443221 11111111 233333
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCchhh
Q psy10812 119 LNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHETNLQDLLAPPQVANKENI 198 (723)
Q Consensus 119 lnVLk~Wve~h~~DF~~~~~L~~~l~~FL~~i~~~~~~lp~~~k~a~~llr~L~~~~~~~~~~~~~~~~~p~~~~~~~~~ 198 (723)
- ||..|++.|+.||.+.+.+..++..+|+.-.... .+ +..+...+.+.+-++ ....+..++...+
T Consensus 135 ~-il~~WL~~~pEDF~~~~~~~~~ls~lL~~g~~~~--~~-e~ra~a~l~r~~~~r-i~~~~~~LP~~~~---------- 199 (728)
T KOG3629|consen 135 R-ILMCWLETYPEDFYDSDKDFAMLSSLLDFGGRNK--LT-ELRAKARLQREVFKR-IGGMQAALPSLGQ---------- 199 (728)
T ss_pred H-HHHHHHHhChHhhcCccHHHHHHHHHHHhcCCCC--cc-cchhHHHHHHHHHHh-ccccccCCCcccc----------
Confidence 3 8999999999999999987777777777655332 22 233333444444322 1111111110000
Q ss_pred cccCHHHHhhhhccccccccccCchhhhhhhhhhhcccccCCCccccccccccccccccccCCCCHHHHHHHHHHHHHHH
Q psy10812 199 ETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHI 278 (723)
Q Consensus 199 ~~lsa~eiaeq~t~ld~~~~~~i~~~e~l~~~w~~~~k~~~~p~i~~~tq~~~~~~~~~~l~~l~p~eIA~QLTlid~~l 278 (723)
+++ | .-.+..++.-++...||+|||++|.++
T Consensus 200 --~~~----------d-------------------------------------~~~~~~dv~~f~~d~iAEQLT~~DA~L 230 (728)
T KOG3629|consen 200 --YVA----------D-------------------------------------MGNKMFDVGKFNCDQIAEQLTFWDAAL 230 (728)
T ss_pred --ccC----------C-------------------------------------CCccchhhhhhhHHHHHHHHHHHHHHH
Confidence 000 0 001223456778999999999999999
Q ss_pred HccCChHHhhhhhhhcCCC-CCCChhHHHHHHHHHHHHHHHHHHhcCCC-ChhhhHHHHHHHHHHHHHHHhcCCcchHHH
Q psy10812 279 FKSIRSEEFLGQAWLKSEK-LTKAPHIVLFTQRFNTMSKLVANEILNRS-NLSQRVHVIEKWIAVADILKCLNNFNGVLT 356 (723)
Q Consensus 279 F~~I~p~Ell~~~w~k~~k-~~~~pni~~~i~~fN~ls~wV~~~IL~~~-~~~~Ra~~I~kfI~IA~~c~~L~NFnsl~A 356 (723)
|+++-|+.|++++|++.++ .+.+|.|.+.|..||.|+..|+++||..+ .+.+||++|+|||+||.+|+.++||.|+.|
T Consensus 231 Fk~l~phqClGcvWs~Rd~~ghl~ptvrATi~QFN~vs~~Vvssilg~~lrp~qRAkiieKWI~iA~E~rllknfssl~a 310 (728)
T KOG3629|consen 231 FKELLPHQCLGCVWSKRDTAGHLVPTVRATIEQFNSVSQRVVSSILGPDLRPEQRAKIIEKWIDIARECRLLKNFSSLKA 310 (728)
T ss_pred HHHhhhHhcccceeccCCCcccccchHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccee
Confidence 9999999999999999864 46699999999999999999999999974 688999999999999999999999999999
Q ss_pred HHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhc-----------------------CCCCcc
Q psy10812 357 IISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHC-----------------------DPPCIP 413 (723)
Q Consensus 357 IisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~-----------------------~~P~IP 413 (723)
|+++|++.+|+|||.+|..++......|++|.++++.++|+-+-|+.|-+. ....||
T Consensus 311 vvsalqs~pihrlk~aw~~v~rdsls~f~els~ifse~~n~~~sReLL~qeGtsksspLe~s~k~a~~r~qr~~~qGtVP 390 (728)
T KOG3629|consen 311 VVSALQSEPIHRLKSAWNSVPRDSISQFRELSSIFSEDGNQGNSRELLIQEGTSKSSPLEASPKRAHARWQRQDKQGTVP 390 (728)
T ss_pred eeccccccHHHHHHhhhccCchhHHHHHHHHHhhcccccCCcchhHHHHHhcccccCCCCcchhhhhhhhhhccCCcccc
Confidence 999999999999999999999999999999999999999999999987431 145899
Q ss_pred ccccchhchhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcC--CCCCCCChHHHHHHhc
Q psy10812 414 YLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNT--PYKIEYNPKVANYILD 478 (723)
Q Consensus 414 flG~~L~DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~--~Y~~~~~~~i~~~L~~ 478 (723)
|||.||+||+.++++.+++.++| +|||+|+|+-.++|.+++.+|.. .|++.++..++.||.-
T Consensus 391 yLGtFLtDLvMlDtA~~d~~e~g---lINFeKRRkEFeVla~lrllQsaar~Ynl~pd~~f~aWf~~ 454 (728)
T KOG3629|consen 391 YLGTFLTDLVMLDTAMNDYPEEG---LINFEKRRKEFEVLAKLRLLQSAARHYNLHPDEEFGAWFQV 454 (728)
T ss_pred hHHHHHHHHHHHhhcccCCcccc---cchHhhhhHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHh
Confidence 99999999999999999999999 99999999999999999999984 8999999999999963
No 5
>KOG2378|consensus
Probab=100.00 E-value=1.1e-40 Score=354.72 Aligned_cols=243 Identities=27% Similarity=0.476 Sum_probs=220.8
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhc-CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHH
Q psy10812 256 KENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLK-SEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHV 334 (723)
Q Consensus 256 ~~~l~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k-~~k~~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~ 334 (723)
...|.-+++.++|.|||++||++|++|+..|++.+..+. ......+.|+..+..|||.+..||+++|+.++.+.+|+++
T Consensus 330 ~~~l~lv~s~dlA~qLt~fdw~Lfnsih~~ElI~y~i~~q~~~~~~tanleLl~~R~neVq~wv~tei~lc~ql~kr~ql 409 (573)
T KOG2378|consen 330 SSILHLVSSKDLAHQLTLFDWSLFNSIHENELIHYVIGGQIPCDRNTANLELLLRRFNEVQHWVATEILLCQQLGKRCQL 409 (573)
T ss_pred cceeeeccHHHHHHHHHHHHHHHHhhhhHhHhhHhhhcccCCCCccchhHHHHHHHHhhchhhhhchhhhhcchhHHHHH
Confidence 456778899999999999999999999999999999884 4445667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcCCCCccc
Q psy10812 335 IEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPY 414 (723)
Q Consensus 335 I~kfI~IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~~P~IPf 414 (723)
++|||+||..|++..|.++++||+.||++.+|+||..||+++|.+.++.|.+++.+++|..|++.||.+.++..||.|||
T Consensus 410 lkkfiKiaal~ke~~~l~sffAV~~GL~~~avSrl~~tweklP~k~kk~~s~~enl~dP~~nhr~yR~l~~km~pp~ipf 489 (573)
T KOG2378|consen 410 LKKFIKIAALCKEGENLNSFFAVVMGLSNRAVSRLDLTWEKLPYKFKKLFSELENLLDPCRNHRTYRLLSSKMSPPYIPF 489 (573)
T ss_pred HHHHHHHHHHHHhhccccchHHHhhcchhHHHHhhhcccccCchHHHhHHHHHHhcCCchhhhHHHHHHHHhcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhchhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHhccCCccchhhhhhHHHh
Q psy10812 415 LGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRD 494 (723)
Q Consensus 415 lG~~L~DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~ 494 (723)
+++.|+|++|+++||.+|+ +| +|||+||+|+|++.+.+++|.+.|++......-
T Consensus 490 ~PlllkD~tf~heGnkt~v-~g---lVNfEKmhmiA~~~Rt~r~cRS~p~~~~a~~~h---------------------- 543 (573)
T KOG2378|consen 490 MPLLLKDLTFIHEGNKTFV-DG---LVNFEKMHMIAKTARTLRHCRSQPLNPGAPHEH---------------------- 543 (573)
T ss_pred cchhhhhceeeccchHHHH-hc---chhHHHHHHHHHHHHHHHHHhcCCCCCCCcccc----------------------
Confidence 9999999999999999998 67 999999999999999999999888763211100
Q ss_pred hhhccCCCcccccchhhHhhhhhcCccccchhHHhhccccccCCC
Q psy10812 495 ITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRT 539 (723)
Q Consensus 495 l~~~~~~~~~i~~~~~~~~yi~~~~~~i~~ed~Ly~lSl~iEPR~ 539 (723)
-.++.|+.+ +.||+|+..|+++|+++|||.
T Consensus 544 --------------~e~rSyVrq-l~VIDnQ~~L~qLS~~lEpr~ 573 (573)
T KOG2378|consen 544 --------------QETRSYVRQ-LRVIDNQRKLSQLSYELEPRS 573 (573)
T ss_pred --------------hhHHHHHhh-HeeeccHHHHHHHhhhcCCCC
Confidence 013345543 468999999999999999983
No 6
>KOG3542|consensus
Probab=100.00 E-value=1.7e-40 Score=363.57 Aligned_cols=271 Identities=26% Similarity=0.448 Sum_probs=227.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHHH
Q psy10812 258 NIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEK 337 (723)
Q Consensus 258 ~l~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I~k 337 (723)
.++.++..|+|.||++-|+++|++|.|.|+++..|.-. .+..+|++.+|-+.||+-..||+++||.+.+..+|+++|++
T Consensus 863 slLqLst~eVAtQLsmrdF~lFrnIEPTEyiDdLFKL~-SKtg~~~LkrFE~l~NqEtfWVAsEIltE~nqlKRmKiIKh 941 (1283)
T KOG3542|consen 863 SLLQLSTQEVATQLSMRDFSLFRNIEPTEYIDDLFKLD-SKTGSPKLKRFEQLFNQETFWVASEILTERNQLKRMKIIKH 941 (1283)
T ss_pred hHhhhHHHHHHHHhhhhhhhhHhcCChHHHHHHHHhhc-cccCCccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999887543 34568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhh--cCCCCcccc
Q psy10812 338 WIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQH--CDPPCIPYL 415 (723)
Q Consensus 338 fI~IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~--~~~P~IPfl 415 (723)
||+||.+|++++|||+++||++||+-++|.||..||++||.|+.+.+++|++|++|++|+..||..|+. ..||.||.+
T Consensus 942 FIKiAlhCReckNFNSMFAIiSGLnla~VaRLr~tWEklpsKYek~lqdlqdlfDPSRNMaKYRn~L~sq~~qPPiiPlf 1021 (1283)
T KOG3542|consen 942 FIKIALHCRECKNFNSMFAIISGLNLAAVARLRSTWEKLPSKYEKMLQDLQDLFDPSRNMAKYRNHLASQAQQPPIIPLF 1021 (1283)
T ss_pred HHHHHHHHHHhcchhhHHHHHhcCchHHHHHHhhhHhhccHHHHHHHHHHHHhhCchhhHHHHHHHHHhhccCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 479999999
Q ss_pred ccchhchhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHhccCCcc----------ch
Q psy10812 416 GMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWII----------ED 485 (723)
Q Consensus 416 G~~L~DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~~~i~~~L~~~~~~~----------~~ 485 (723)
+++-+||||+||||.++. || ||||+|+|+|++-|+.+.+.-+.+|.... .+......+ +-
T Consensus 1022 PViKKDlTFlHeGNdskv-dg---LvNFEKLRmIaKeIR~V~rmsSanmdpA~------Mfr~r~gslsqgstn~n~ldv 1091 (1283)
T KOG3542|consen 1022 PVIKKDLTFLHEGNDSKV-DG---LVNFEKLRMIAKEIRGVMRMSSANMDPAS------MFRRRGGSLSQGSTNMNSLDV 1091 (1283)
T ss_pred hheeccceeeecCCchhh-hc---cccHHHHHHHHHHHHHHHhhccCCCCHHH------HHHhcCCcccccccccceeec
Confidence 999999999999999987 78 99999999999999999999888886321 222111111 11
Q ss_pred hhhhhHHHhhhhccCCCccc-----ccchhhHhhhhhcCccccchhHHhhccccccCCCC
Q psy10812 486 EDMANTIRDITQYQNTPYKI-----EYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRTT 540 (723)
Q Consensus 486 ~~~~~~~~~l~~~~~~~~~i-----~~~~~~~~yi~~~~~~i~~ed~Ly~lSl~iEPR~~ 540 (723)
......-..+...++.+.+. .+.++|++|+. .+.+.+||++|.-+||++||...
T Consensus 1092 sq~g~hkKr~rrss~lnaKKlYEdAqMaRKVKqYLs-~L~ve~dEe~lq~mSlq~EPa~~ 1150 (1283)
T KOG3542|consen 1092 SQVGTHKKRMRRSSNLNAKKLYEDAQMARKVKQYLS-GLHVEDDEEELQSMSLQIEPAVQ 1150 (1283)
T ss_pred ccchhhhhhccccccccHHHHHHHHHHHHHHHHHhc-cCcccccHHHHhhhheecchhhc
Confidence 01111111111112222222 23578999985 56899999999999999999864
No 7
>KOG3417|consensus
Probab=99.98 E-value=2.4e-32 Score=327.99 Aligned_cols=211 Identities=33% Similarity=0.528 Sum_probs=199.1
Q ss_pred cccccCCCCHHHHHHHHHH-HHHHHHccCChHHhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHH
Q psy10812 255 NKENIETLSALEIAEQMTY-IDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVH 333 (723)
Q Consensus 255 ~~~~l~~l~p~eIA~QLTl-id~~lF~~I~p~Ell~~~w~k~~k~~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~ 333 (723)
..+.+.+.+|.++|+|+|. +|...|++|.+.|++++.|.+.++...+|++..++.++|.++.||..+|+..+.++.|+.
T Consensus 207 ~~f~~~~~~~~e~~~~lt~lle~~~~~~iq~~e~~~~~~~~~~~~~~~P~~~~~~~~~~~~s~wv~~~il~~e~l~~r~~ 286 (840)
T KOG3417|consen 207 RIFDFLRLTPRELSEQLTSLLESPDFRKIQPFELLSQSWLKKDKKINSPNIESSTSRFNHLSSWVEQEILNAEQLEERAE 286 (840)
T ss_pred eeeeccccchhhhccccccccccccccccCHHHHHHhhhhhcccccCCCchhhhhhcccchHHHHHHHHhccccHHHHHH
Confidence 3567889999999999996 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcCC-CCc
Q psy10812 334 VIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDP-PCI 412 (723)
Q Consensus 334 ~I~kfI~IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~~-P~I 412 (723)
++-++|++|.+..+++|||+++++++|+++++|+||++||+.++.+..+.+..+..++...+||++||..+..|+. |||
T Consensus 287 ~~~~~L~~a~~~~el~n~~~~~~~v~~~~~s~i~~L~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~yr~~l~~~~~~~~i 366 (840)
T KOG3417|consen 287 VILHFLEVAAKLSELNNLNSLMEVVSGLQSSPISRLKKTGSYLSSEIKKKLILLTELTSLLDNVQNYRRYLQSCNISPCI 366 (840)
T ss_pred hhHHHHHHhhhhhhccccccHHHHHhccccchhhhhhhhhccccccchhhhhhHHHHhhcchHHHHHHHHhhhcccCccc
Confidence 9999999999999999999999999999999999999999999998888888888888888899999999999999 999
Q ss_pred cccccchhc-hhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCC
Q psy10812 413 PYLGMYLTE-FARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYK 465 (723)
Q Consensus 413 PflG~~L~D-L~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~ 465 (723)
||+|+|+.| ++.+++++|++....+...++|.|+..++.++.+++.+|+..|.
T Consensus 367 p~~~~~l~d~~~~l~~~~p~~~~~~~~~e~~~~~~~~~~~i~~elq~l~~~~~~ 420 (840)
T KOG3417|consen 367 PILGVYLLDSLVKLNEALPTKLLRIGERELSFSKLKVLLEIISELQDLQNKELH 420 (840)
T ss_pred cccccccHHHHHhhhhcCCccccccccccccchhhhHHHHHHHHHHHHhccccc
Confidence 999999999 99999999998752334589999999999999999999987763
No 8
>KOG3541|consensus
Probab=99.97 E-value=1.6e-29 Score=267.26 Aligned_cols=235 Identities=26% Similarity=0.409 Sum_probs=207.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCC-------------CCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Q psy10812 260 ETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSE-------------KLTKAPHIVLFTQRFNTMSKLVANEILNRS 326 (723)
Q Consensus 260 ~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~-------------k~~~~pni~~~i~~fN~ls~wV~~~IL~~~ 326 (723)
...++.++|+|||.|+++.|..|.+.|++.-.-+... +....-.+.++++|||+++..++++||...
T Consensus 206 ~c~dal~laqqlt~Ie~~rls~i~~EelvqiL~sdp~sei~~~~~~~l~~k~~~~ysie~y~~wfn~Lsa~~Atevlk~~ 285 (477)
T KOG3541|consen 206 KCVDALDLAQQLTHIESCRLSLIPHEELVQILDSDPESEILESLVGLLAMKFPYDYSIERYMSWFNHLSALCATEVLKAA 285 (477)
T ss_pred ccccHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCcHHHHHHHhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5779999999999999999999999998865433220 122234689999999999999999999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhh
Q psy10812 327 NLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQH 406 (723)
Q Consensus 327 ~~~~Ra~~I~kfI~IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~ 406 (723)
.-+.|++++++||++|.+|.+++||||+|||+.||+-++|.|||+||.+|. ...|+-|+--|+|+.||.+||..++.
T Consensus 286 kk~~rsamlef~iD~arec~nignfnSmmai~~~lnL~avarlkktw~kv~---taK~e~lehqmdps~nflsyr~t~Ka 362 (477)
T KOG3541|consen 286 KKQTRSAMLEFLIDLARECFNIGNFNSMMAIGPGLNLNAVARLKKTWIKVR---TAKFEALEHQMDPSSNFLSYRLTDKA 362 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhhhhccCCCCchHHHHHHHHHHHH---HHHHHHHHhcCCchhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999984 46788999999999999999999865
Q ss_pred c-----------CCCCccccccchhchhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHH
Q psy10812 407 C-----------DPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANY 475 (723)
Q Consensus 407 ~-----------~~P~IPflG~~L~DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~~~i~~~ 475 (723)
. ..-.|||+.++|+|+.+|+.+.+.++++| -|||.|+..|+.-++++..++++.-.++.+|.+++|
T Consensus 363 a~wrs~sang~~ekaviPff~l~Lkdl~~i~~~h~~~l~Ng---hinf~k~~~i~~qlr~v~~W~~v~c~fek~p~v~sy 439 (477)
T KOG3541|consen 363 AKWRSPSANGAPEKAVIPFFTLFLKDLLDISARHRLFLPNG---HINFLKFVGIEGQLRTVELWSGVACPFEKVPNVNSY 439 (477)
T ss_pred HhhcCccccCCCccccccchhhhHHHHHHHHhhhcccCCCc---hhHHHHHHhHHhhhhhhhhhhcccchHhhCchHHhH
Confidence 2 23679999999999999999999999999 899999999999999999999998889999999999
Q ss_pred HhccCCccchhhhhhHHHhhhhccCCCcccccchhhHhhhhhcCccccchhHHhhccccccCCCCC
Q psy10812 476 ILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRTTG 541 (723)
Q Consensus 476 L~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~yi~~~~~~i~~ed~Ly~lSl~iEPR~~~ 541 (723)
|+-.+ +..|+.++.+|+++||+...
T Consensus 440 lliae-----------------------------------------vlse~alm~~sfe~epPen~ 464 (477)
T KOG3541|consen 440 LLIAE-----------------------------------------VLSEPALMRASFESEPPENI 464 (477)
T ss_pred Hhhhh-----------------------------------------hcccchhhhheecccCCcch
Confidence 86321 23467789999999999753
No 9
>KOG3417|consensus
Probab=99.59 E-value=5.9e-15 Score=178.28 Aligned_cols=206 Identities=24% Similarity=0.402 Sum_probs=176.5
Q ss_pred CHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHH
Q psy10812 263 SALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVA 342 (723)
Q Consensus 263 ~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I~kfI~IA 342 (723)
...+++.++|+++..++..+...+.. .|.+....++.++-.++...++.++.|+...|..+.....| ||.++
T Consensus 609 ~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~s------~~~~~ 680 (840)
T KOG3417|consen 609 KSAEIACQLTLLDAILTMEICIPRSL--LWAKVQNEEKSKKDLAFTETFNLVSFWSSTIILTQQPAKRS------FIHVA 680 (840)
T ss_pred hHHHHHhhhhhhhhHhhhchhhhhHH--HHhhhhhcccccchHHHHHHHhhhhhhhHHhhhccccccch------hHHHH
Confidence 56678888888888887777665555 45554556677888899999999999999999888776666 99999
Q ss_pred HHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhh-hhcCCCCccccccchhc
Q psy10812 343 DILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKL-QHCDPPCIPYLGMYLTE 421 (723)
Q Consensus 343 ~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L-~~~~~P~IPflG~~L~D 421 (723)
++|..++||.++++|.++|.+++++|+..+|....++....+..+..++....|+-.||.++ ..+.+|||||+|++|+|
T Consensus 681 ~~~~~~~~~~~l~~~~s~l~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~cvP~~~~~l~d 760 (840)
T KOG3417|consen 681 KFCKIMKNFRTLMNINSALASSPIHRSTPLWRLEWPKDIREFSALSPLVIDKSNSSTYRRALLSVPEPPCVPFLGVILQD 760 (840)
T ss_pred hhhhhhCchhhhhHHHHHhccchhhhcchhhcccchhhHHHhhccccchhcccccHHHHHHHhcCCCCCCcCceeEEeec
Confidence 99999999999999999999999999999999999999999999988887777766666654 45899999999999999
Q ss_pred hhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHh
Q psy10812 422 FARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYIL 477 (723)
Q Consensus 422 L~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~~~i~~~L~ 477 (723)
|||.++|||++. ++..+.+||.|+..+..+++.++.+|...|.+.++...++.+.
T Consensus 761 ltf~~~gnpd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (840)
T KOG3417|consen 761 LTFVHTGNPDYL-DSVVNHGKFDKRTNIKDIVQEVQKFQYVGYKVNPIIDFQNDIN 815 (840)
T ss_pred ceeecCCCCCcc-ccccchhHHHHHHHHHHHHHHHHHhcccccccCcchhhhhHHH
Confidence 999999999998 6767789999999999999999999988888887776666554
No 10
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=99.58 E-value=1.6e-16 Score=165.13 Aligned_cols=109 Identities=29% Similarity=0.535 Sum_probs=93.6
Q ss_pred CCCCCCCcccCcccchhHhHhhhhcCC-CCCCCccccceeeeeeeeccCCCccCCCCcccccchhhhhhhhhhHHHHHHH
Q psy10812 546 AQLPNLPLMVDAEEKFHNLKSKLQHCD-PPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQ 624 (723)
Q Consensus 546 ~~le~l~~~~~~~~n~~~yr~~l~~~~-pPciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k~~r~~~~~i~~~i~~ 624 (723)
..+.++..++++++||+.||+.++++. +|||||+|+||+||+++++|||++.++| +|||.| ++++++++.+++.
T Consensus 125 ~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~lg~~l~dl~~~~~~~~~~~~~~---~iNf~k--~~~i~~~i~~~~~ 199 (242)
T smart00147 125 KLFEELEELLSPERNFKNYREALSSCNLPPCVPFLGVLLKDLTFIDEGNPDFLENG---LVNFEK--RRKIAEILREIRQ 199 (242)
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHccCcccccCC---cccHHH--HHHHHHHHHHHHH
Confidence 457788899999999999999999999 9999999999999999999999998766 999999 9999999999999
Q ss_pred HHHhh-hcccc-cc-----ccc-cchHHHHHHHHhccccCCCC
Q psy10812 625 QQQQQ-QQQME-DE-----VSS-TSTAATAFAIATSASSNPRD 659 (723)
Q Consensus 625 ~q~~~-~~~~~-~~-----~~~-~~t~s~~~~y~~S~eiEPr~ 659 (723)
||+.+ .+.+. +. ... .....++.+|++|+++|||.
T Consensus 200 ~Q~~~y~~~~~~~~iq~~l~~~~~~~~~~~~~~~~S~~~EP~~ 242 (242)
T smart00147 200 LQSQPYNLRPNRSDIQSLLQQLLDHLDEEEELYQLSLKIEPRV 242 (242)
T ss_pred HhcCCCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHHhCCCC
Confidence 99977 77777 55 111 11122448999999999984
No 11
>KOG2378|consensus
Probab=99.53 E-value=2.3e-15 Score=161.91 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=92.7
Q ss_pred CCCCCCCcccCcccchhHhHhhhhcCCCCCCCccccceeeeeeeeccCCCccCCCCcccccchhhhhhhhhhHHHHHHHH
Q psy10812 546 AQLPNLPLMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQQ 625 (723)
Q Consensus 546 ~~le~l~~~~~~~~n~~~yr~~l~~~~pPciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k~~r~~~~~i~~~i~~~ 625 (723)
+.++++++++||++||+.||..+.++.||-|||+++.|+|+||+++||++|+.| +|||+| +||+|++.+.+++|
T Consensus 457 k~~s~~enl~dP~~nhr~yR~l~~km~pp~ipf~PlllkD~tf~heGnkt~v~g----lVNfEK--mhmiA~~~Rt~r~c 530 (573)
T KOG2378|consen 457 KLFSELENLLDPCRNHRTYRLLSSKMSPPYIPFMPLLLKDLTFIHEGNKTFVDG----LVNFEK--MHMIAKTARTLRHC 530 (573)
T ss_pred hHHHHHHhcCCchhhhHHHHHHHHhcCCCCCCccchhhhhceeeccchHHHHhc----chhHHH--HHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999987 999999 99999999999999
Q ss_pred HHhh-hcccccc--------ccccchHHHHHHHHhccccCCCC
Q psy10812 626 QQQQ-QQQMEDE--------VSSTSTAATAFAIATSASSNPRD 659 (723)
Q Consensus 626 q~~~-~~~~~~~--------~~~~~t~s~~~~y~~S~eiEPr~ 659 (723)
+++| +....-. -+...-+.+..+.++|-+|||+.
T Consensus 531 RS~p~~~~a~~~h~e~rSyVrql~VIDnQ~~L~qLS~~lEpr~ 573 (573)
T KOG2378|consen 531 RSQPLNPGAPHEHQETRSYVRQLRVIDNQRKLSQLSYELEPRS 573 (573)
T ss_pred hcCCCCCCCcccchhHHHHHhhHeeeccHHHHHHHhhhcCCCC
Confidence 9999 5422111 12222345556889999999973
No 12
>KOG3629|consensus
Probab=99.49 E-value=5.5e-15 Score=161.34 Aligned_cols=102 Identities=24% Similarity=0.340 Sum_probs=91.3
Q ss_pred CCCCccccceeeeeeeeccCCCccCCCCcccccchhhhhhhhhhHHHHHHHHHHhh---hcccccc----ccccchHHHH
Q psy10812 574 PCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQQQQQQ---QQQMEDE----VSSTSTAATA 646 (723)
Q Consensus 574 PciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k~~r~~~~~i~~~i~~~q~~~---~~~~~~~----~~~~~t~s~~ 646 (723)
=.|||+|+|||||+++|++.+|++++| ||||+| |||++++|++++.+|+.+ |+.++.+ +.......++
T Consensus 387 GtVPyLGtFLtDLvMlDtA~~d~~e~g---lINFeK--RRkEFeVla~lrllQsaar~Ynl~pd~~f~aWf~~l~~ltE~ 461 (728)
T KOG3629|consen 387 GTVPYLGTFLTDLVMLDTAMNDYPEEG---LINFEK--RRKEFEVLAKLRLLQSAARHYNLHPDEEFGAWFQVLEQLTED 461 (728)
T ss_pred cccchHHHHHHHHHHHhhcccCCcccc---cchHhh--hhHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHhccCCcHH
Confidence 368999999999999999999999998 999999 999999999999999999 6665555 6667778888
Q ss_pred HHHHhccccCCCCCCCChhhhccccchhhhhcch
Q psy10812 647 FAIATSASSNPRDISPVEEVRNKRKESVLSTATT 680 (723)
Q Consensus 647 ~~y~~S~eiEPr~~~~~~~~r~~~~~~i~~~~~~ 680 (723)
..|..||||||++...++.++..|..++++++..
T Consensus 462 es~~~s~eiE~p~~~stp~p~~~r~ss~~sq~~~ 495 (728)
T KOG3629|consen 462 ESIIQSCEIEKPPMHSTPDPSSSRISSTNSQIPS 495 (728)
T ss_pred HHHHHhhcccCCCCCCCCCCccccchhhhhhhHH
Confidence 9999999999999888888888888999999864
No 13
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=99.43 E-value=1.4e-14 Score=150.03 Aligned_cols=104 Identities=28% Similarity=0.498 Sum_probs=88.3
Q ss_pred CCCCCCCcccCcccchhHhHhhhhcC--CCCCCCccccceeeeeeeeccCCCccCCCCcccccchhhhhhhhhhHHHHHH
Q psy10812 546 AQLPNLPLMVDAEEKFHNLKSKLQHC--DPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQ 623 (723)
Q Consensus 546 ~~le~l~~~~~~~~n~~~yr~~l~~~--~pPciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k~~r~~~~~i~~~i~ 623 (723)
..++++..++++++||+.||..++++ .+|||||+|+||+||+++++|||++.++| +|||.| .+++++++.+++
T Consensus 125 ~~~~~l~~l~~~~~n~~~yr~~l~~~~~~~p~IP~lg~~l~dl~~~~e~~~~~~~~~---~iN~~K--~~~i~~~i~~~~ 199 (237)
T cd00155 125 KLFEELEELVDPSRNFKNYRKLLKSVGPNPPCVPFLGVYLKDLTFLHEGNPDFLEGN---LVNFEK--RRKIAEILREIR 199 (237)
T ss_pred HHHHHHHHHhCcHhhHHHHHHHHHhcCCCCCCeeehhHHHHHHHHHHccCCccCcCC---CccHHH--HHHHHHHHHHHH
Confidence 45678888999999999999999999 89999999999999999999999999855 999999 999999999999
Q ss_pred HHHHhh-hcccccc----cccc--chHHHHHHHHhccc
Q psy10812 624 QQQQQQ-QQQMEDE----VSST--STAATAFAIATSAS 654 (723)
Q Consensus 624 ~~q~~~-~~~~~~~----~~~~--~t~s~~~~y~~S~e 654 (723)
+||+.+ .+.+.+. .... ....++++|++|++
T Consensus 200 ~~Q~~~Y~~~~~~~iq~~l~~~~~~~~~~~~l~~~Sl~ 237 (237)
T cd00155 200 QLQSNSYELNRDEDILAFLWKLLELILNEDELYELSLE 237 (237)
T ss_pred HHhhCCCCCCCcHHHHHHHHhccccCCCHHHHHHHhcC
Confidence 999976 6665555 1111 35566678888874
No 14
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=98.96 E-value=2.3e-11 Score=121.04 Aligned_cols=60 Identities=33% Similarity=0.858 Sum_probs=53.1
Q ss_pred CCCCCCcccCcccchhHhHhhhhcCCC-CCCCccccceeeeeeeeccCCCccCCCCcccccchh
Q psy10812 547 QLPNLPLMVDAEEKFHNLKSKLQHCDP-PCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTK 609 (723)
Q Consensus 547 ~le~l~~~~~~~~n~~~yr~~l~~~~p-PciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k 609 (723)
.+.+++.++++++||+.||..+.+++| |||||+|+||+||+++++|||++++++ +|||+|
T Consensus 125 ~~~~l~~l~~~~~~~~~yr~~~~~~~~~~~IP~lg~~l~dl~~~~~~~~~~~~~~---liN~~K 185 (188)
T PF00617_consen 125 TFEELESLFSPSNNYKNYREALKKCNPQPCIPFLGIFLKDLIFIEEGNPDFIDDG---LINFEK 185 (188)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTSTSSSSB--HHHHHHHHHHHHHHS-SECTTT---CEEHHH
T ss_pred HHHHHHhhcccchhhHHHHHhhcccccCceecccHHHHHHHHHHHhcCCCCCCCc---cCCccc
Confidence 355677788999999999999999999 999999999999999999999999987 999999
No 15
>KOG3542|consensus
Probab=98.51 E-value=2.2e-08 Score=112.49 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=70.8
Q ss_pred CCCCCCCcccCcccchhHhHhhhhc--CCCCCCCccccceeeeeeeeccCCCccCCCCcccccchhhhhhhhhhHHHHHH
Q psy10812 546 AQLPNLPLMVDAEEKFHNLKSKLQH--CDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQ 623 (723)
Q Consensus 546 ~~le~l~~~~~~~~n~~~yr~~l~~--~~pPciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k~~r~~~~~i~~~i~ 623 (723)
++|..+..|+||+||...||..|.+ +.||.||.+++.=+||||+|+||.++.++ ||||+| -|++++-|+.+-
T Consensus 986 k~lqdlqdlfDPSRNMaKYRn~L~sq~~qPPiiPlfPViKKDlTFlHeGNdskvdg----LvNFEK--LRmIaKeIR~V~ 1059 (1283)
T KOG3542|consen 986 KMLQDLQDLFDPSRNMAKYRNHLASQAQQPPIIPLFPVIKKDLTFLHEGNDSKVDG----LVNFEK--LRMIAKEIRGVM 1059 (1283)
T ss_pred HHHHHHHHhhCchhhHHHHHHHHHhhccCCCccccchheeccceeeecCCchhhhc----cccHHH--HHHHHHHHHHHH
Confidence 3677888999999999999999987 58999999999999999999999999887 999999 888899999988
Q ss_pred HHHHhh
Q psy10812 624 QQQQQQ 629 (723)
Q Consensus 624 ~~q~~~ 629 (723)
++-+.+
T Consensus 1060 rmsSan 1065 (1283)
T KOG3542|consen 1060 RMSSAN 1065 (1283)
T ss_pred hhccCC
Confidence 877665
No 16
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=98.22 E-value=3.5e-06 Score=78.99 Aligned_cols=44 Identities=39% Similarity=0.549 Sum_probs=39.8
Q ss_pred hcchhhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhcC
Q psy10812 110 LSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCT 153 (723)
Q Consensus 110 ~~~~iqlRVlnVLk~Wve~h~~DF~~~~~L~~~l~~FL~~i~~~ 153 (723)
....+|.||++||++||++||+||++++.+...+.+|++.+...
T Consensus 67 ~~~~~~~rv~~~l~~Wv~~~~~dF~~~~~l~~~l~~f~~~~~~~ 110 (127)
T smart00229 67 NPLRVKNRVLNILRHWVENYWQDFEDDPKLILRLLEFLDLVDQE 110 (127)
T ss_pred hHHHHHHHHHHHHHHHHHHCCcccccCHHHHHHHHHHHHHHhhC
Confidence 34579999999999999999999999999999999999988655
No 17
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=98.02 E-value=2.1e-05 Score=72.79 Aligned_cols=87 Identities=29% Similarity=0.370 Sum_probs=56.8
Q ss_pred ccchhhhc--cccccchhhHHHHHHHHhcCCCCCCCCchHHhhhhhccchhcchhhhHHHHHHHHHHhcCCCCCCCcHHH
Q psy10812 62 QRSLLLIF--STRSSTSTAATAFAIATSASSNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKEL 139 (723)
Q Consensus 62 ~~~~~~~~--~~r~~~~~~a~af~i~t~~~~~~~~~~~~~~~~~~rke~v~~~~iqlRVlnVLk~Wve~h~~DF~~~~~L 139 (723)
+..+.-+| +-|++++ +..-+......-..+.+.+. +....+++ ...++|.||++||+.||++||+||.+|+.+
T Consensus 17 d~~f~~~FllTyrsF~s-~~~ll~~L~~rf~~~~~~~~--~~~~~~~~--~~~~~~~~v~~~l~~Wv~~~~~df~~d~~l 91 (122)
T cd06224 17 DPSFVSTFLLTYRSFTT-PTELLEKLIERYEIAPPENL--EYNDWDKK--KSKPIRLRVLNVLRTWVENYPYDFFDDEEL 91 (122)
T ss_pred cHHHHHHHHHHhhhhCC-HHHHHHHHHHHhCCCCCCcc--cHHHHHHH--HHHHHHHHHHHHHHHHHHhCCCcccccHHH
Confidence 33444444 6678877 44444333333333322221 11111122 245799999999999999999999889999
Q ss_pred HHHHHHHHHHhhcC
Q psy10812 140 RYMTLEFLEEIVCT 153 (723)
Q Consensus 140 ~~~l~~FL~~i~~~ 153 (723)
...+.+|++.+...
T Consensus 92 ~~~l~~F~~~~~~~ 105 (122)
T cd06224 92 LELLEEFLNRLVQE 105 (122)
T ss_pred HHHHHHHHHHHccc
Confidence 99999999998754
No 18
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=97.58 E-value=6.5e-05 Score=67.91 Aligned_cols=73 Identities=25% Similarity=0.304 Sum_probs=43.5
Q ss_pred cccccchhhHHHHHHHHhcCCCCCCCCchHHhhhhhccchhcchhhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q psy10812 70 STRSSTSTAATAFAIATSASSNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEF 146 (723)
Q Consensus 70 ~~r~~~~~~a~af~i~t~~~~~~~~~~~~~~~~~~rke~v~~~~iqlRVlnVLk~Wve~h~~DF~~~~~L~~~l~~F 146 (723)
+-|++++ +..-+....+.-..+.+.+....... +++ ...++|+||++||+.|++.||+||.+++.+...+.+|
T Consensus 32 Tyr~F~t-p~~Ll~~L~~ry~~~~~~~~~~~~~~-~~~--~~~~i~~rv~~~l~~Wi~~~~~df~~~~~l~~~l~~F 104 (104)
T PF00618_consen 32 TYRSFTT-PEELLDKLIQRYNIPPPNGLSQDESW-DQD--SQEPIRLRVLNVLKYWIENYPDDFRDDPELLEKLKQF 104 (104)
T ss_dssp HHHHCS--HHHHHHHHHHHHT---SSS-HHHHT--HHH--HHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHH
T ss_pred HhHhhCC-HHHHHHHHHHHhcccCCccccccchh-hhh--hhHHHHHHHHHHHHHHHHHChHhhCCCHHHHHHHHcC
Confidence 4477776 44444333333322222332222111 122 1346999999999999999999999999988888877
No 19
>KOG3541|consensus
Probab=97.11 E-value=8e-05 Score=80.95 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=86.1
Q ss_pred CCCCCCCcccCcccchhHhHhhhhcC---------CCC--CCCccccceeeeeeeeccCCCccCCCCcccccchhhhhhh
Q psy10812 546 AQLPNLPLMVDAEEKFHNLKSKLQHC---------DPP--CIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRK 614 (723)
Q Consensus 546 ~~le~l~~~~~~~~n~~~yr~~l~~~---------~pP--ciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k~~r~~ 614 (723)
+.|+-++--|||+-||-+||..++-. +|| .|||+.+||+|+-+|.++.+.|+++| -|||.| ...
T Consensus 338 aK~e~lehqmdps~nflsyr~t~Kaa~wrs~sang~~ekaviPff~l~Lkdl~~i~~~h~~~l~Ng---hinf~k--~~~ 412 (477)
T KOG3541|consen 338 AKFEALEHQMDPSSNFLSYRLTDKAAKWRSPSANGAPEKAVIPFFTLFLKDLLDISARHRLFLPNG---HINFLK--FVG 412 (477)
T ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHhhcCccccCCCccccccchhhhHHHHHHHHhhhcccCCCc---hhHHHH--HHh
Confidence 34666777899999999999998653 343 89999999999999999999999998 899999 888
Q ss_pred hhhHHHHHHHHHHhh-hcccccc----ccccchHHHHHHHHhccccCCCCC
Q psy10812 615 LKPLQHQQQQQQQQQ-QQQMEDE----VSSTSTAATAFAIATSASSNPRDI 660 (723)
Q Consensus 615 ~~~i~~~i~~~q~~~-~~~~~~~----~~~~~t~s~~~~y~~S~eiEPr~~ 660 (723)
+..-+++.-+++..- -+...|. .--.+..++.-+...|-|.||+|.
T Consensus 413 i~~qlr~v~~W~~v~c~fek~p~v~sylliaevlse~alm~~sfe~epPen 463 (477)
T KOG3541|consen 413 IEGQLRTVELWSGVACPFEKVPNVNSYLLIAEVLSEPALMRASFESEPPEN 463 (477)
T ss_pred HHhhhhhhhhhhcccchHhhCchHHhHHhhhhhcccchhhhheecccCCcc
Confidence 889999998888764 3444444 112233445556778899999884
No 20
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=96.67 E-value=0.0021 Score=60.15 Aligned_cols=44 Identities=39% Similarity=0.567 Sum_probs=39.3
Q ss_pred hcchhhHHHHHHHHhhhccccccchHHHHHHHHHHHHHHhcCCC
Q psy10812 677 TATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPN 720 (723)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (723)
+....||++++++||++|.+||+.|.+|.....+|++++..++.
T Consensus 69 ~~~~~rv~~~l~~Wv~~~~~dF~~~~~l~~~l~~f~~~~~~~~~ 112 (127)
T smart00229 69 LRVKNRVLNILRHWVENYWQDFEDDPKLILRLLEFLDLVDQEKG 112 (127)
T ss_pred HHHHHHHHHHHHHHHHHCCcccccCHHHHHHHHHHHHHHhhCcC
Confidence 34557899999999999999999999999999999999988743
No 21
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=94.25 E-value=0.049 Score=50.18 Aligned_cols=41 Identities=41% Similarity=0.676 Sum_probs=37.0
Q ss_pred chhhHHHHHHHHhhhccccccchHHHHHHHHHHHHHHhcCC
Q psy10812 679 TTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTP 719 (723)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (723)
.-.+|++++++|+.+|..||..|..|.....+|++.+..++
T Consensus 66 ~~~~v~~~l~~Wv~~~~~df~~d~~l~~~l~~F~~~~~~~~ 106 (122)
T cd06224 66 IRLRVLNVLRTWVENYPYDFFDDEELLELLEEFLNRLVQEG 106 (122)
T ss_pred HHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHcccH
Confidence 34569999999999999999999999999999999988764
No 22
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=84.47 E-value=0.89 Score=40.84 Aligned_cols=30 Identities=47% Similarity=0.697 Sum_probs=24.8
Q ss_pred hHHHHHHHHhhhccccccchHHHHHHHHHH
Q psy10812 682 RVLNVLRHWISKHTQDFIQDKELRYMTLEF 711 (723)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (723)
||++++++|++.|..||..|.+|-....+|
T Consensus 75 rv~~~l~~Wi~~~~~df~~~~~l~~~l~~F 104 (104)
T PF00618_consen 75 RVLNVLKYWIENYPDDFRDDPELLEKLKQF 104 (104)
T ss_dssp HHHHHHHHHHHHHCCCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHChHhhCCCHHHHHHHHcC
Confidence 799999999999999999999866555544
No 23
>COG4802 FtrB Ferredoxin-thioredoxin reductase, catalytic subunit [Energy production and conversion]
Probab=24.61 E-value=70 Score=29.25 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=15.7
Q ss_pred hhhhcCCCCCCC-----------ccccceeee
Q psy10812 566 SKLQHCDPPCIP-----------YLGMYLTEL 586 (723)
Q Consensus 566 ~~l~~~~pPciP-----------f~g~~l~dl 586 (723)
+--+.+.=|||| |-|+||++=
T Consensus 60 eedk~ivCPCvy~~ddi~e~g~C~C~Lyl~~e 91 (110)
T COG4802 60 EEDKDIVCPCVYRDDDIREYGECYCGLYLSPE 91 (110)
T ss_pred HHhhceeccCcCCccchhhhCceeEEEEeccc
Confidence 344457889999 788998864
Done!