Query psy10812
Match_columns 723
No_of_seqs 475 out of 1372
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 19:07:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ii0_A SOS-1, SON of sevenless 100.0 7.4E-63 2.5E-67 558.7 25.5 350 101-542 115-464 (490)
2 4f7z_A RAP guanine nucleotide 100.0 1.9E-61 6.4E-66 589.6 27.5 247 255-539 752-998 (999)
3 2ije_S Guanine nucleotide-rele 100.0 1.8E-60 6.2E-65 492.5 18.1 236 262-540 4-239 (240)
4 3ksy_A SOS-1, SON of sevenless 100.0 9.7E-59 3.3E-63 566.2 28.2 376 70-542 630-1023(1049)
5 3qxl_A RAS-specific guanine nu 100.0 3.2E-57 1.1E-61 475.7 18.3 244 256-538 25-271 (271)
6 3cf6_E RAP guanine nucleotide 100.0 3.9E-56 1.3E-60 522.5 21.8 245 257-539 449-693 (694)
7 2ije_S Guanine nucleotide-rele 99.8 2.3E-22 7.8E-27 207.5 -1.9 110 546-660 124-239 (240)
8 2ii0_A SOS-1, SON of sevenless 99.8 7.2E-21 2.5E-25 215.3 -0.8 111 557-669 349-471 (490)
9 4f7z_A RAP guanine nucleotide 99.7 8.1E-20 2.8E-24 223.0 -1.6 108 546-659 879-998 (999)
10 3qxl_A RAS-specific guanine nu 99.7 1.4E-19 4.9E-24 189.7 -2.0 107 546-658 151-271 (271)
11 3t6a_A Breast cancer anti-estr 99.7 3.6E-18 1.2E-22 179.2 8.3 160 258-419 43-214 (333)
12 3t6g_A SH2 domain-containing p 99.7 2.6E-18 8.8E-23 180.1 6.8 157 258-420 44-214 (331)
13 3ksy_A SOS-1, SON of sevenless 99.7 2.1E-19 7.1E-24 219.9 -2.6 119 548-670 901-1031(1049)
14 3cf6_E RAP guanine nucleotide 99.7 3.2E-18 1.1E-22 201.1 -3.4 108 546-659 574-693 (694)
No 1
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=100.00 E-value=7.4e-63 Score=558.70 Aligned_cols=350 Identities=29% Similarity=0.544 Sum_probs=282.6
Q ss_pred hhhhhccchhcchhhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhhhhccccc
Q psy10812 101 VRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHE 180 (723)
Q Consensus 101 ~~~~rke~v~~~~iqlRVlnVLk~Wve~h~~DF~~~~~L~~~l~~FL~~i~~~~~~lp~~~k~a~~llr~L~~~~~~~~~ 180 (723)
.+++++++ ..++|+||++||+.||++||+||+.|+.+...|.+|++.+... ..++.+..+.+.+.+.......
T Consensus 115 ~~~~~~~~--~~~iq~rV~~vl~~Wv~~~~~DF~~d~~ll~~L~~F~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~ 187 (490)
T 2ii0_A 115 LKRFRKEY--IQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGK-----AMKKWVESITKIIQRKKIARDN 187 (490)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHTTCCCT-----TTHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhh--hhhHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHhccch-----hHHHHHHHHHHHHHHHHhcccC
Confidence 44555554 3599999999999999999999999999999999999885432 2355667777776543211000
Q ss_pred cccccccCCCCCCCchhhcccCHHHHhhhhccccccccccCchhhhhhhhhhhcccccCCCccccccccccccccccccC
Q psy10812 181 TNLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIE 260 (723)
Q Consensus 181 ~~~~~~~~p~~~~~~~~~~~lsa~eiaeq~t~ld~~~~~~i~~~e~l~~~w~~~~k~~~~p~i~~~tq~~~~~~~~~~l~ 260 (723)
.... .+++ +. ...++. |... ........+++
T Consensus 188 -~~~~-----------------------~~~~-~~-~~p~~~--------~~~~---------------~~~~~~~~~ll 218 (490)
T 2ii0_A 188 -GPGH-----------------------NITF-QS-SPPTVE--------WHIS---------------RPGHIETFDLL 218 (490)
T ss_dssp -------------------------------C-CS-CCCCCC--------CCSS---------------CTTCGGGCCTT
T ss_pred -CCCc-----------------------cccc-CC-CCCccc--------cccC---------------CCCCcccchhh
Confidence 0000 0000 00 000000 0000 00011345788
Q ss_pred CCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHH
Q psy10812 261 TLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIA 340 (723)
Q Consensus 261 ~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I~kfI~ 340 (723)
+++|.|||+|||++|+++|++|+|.||+++.|++.++...+||+.+++++||.+++||+++||.++++++||++|++||+
T Consensus 219 ~~~p~elA~QLTlid~~lf~~I~~~E~l~~~w~~~~~~~~~pnl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~kfI~ 298 (490)
T 2ii0_A 219 TLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIE 298 (490)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCHHHHHHHHhcCCCcCCCCccHHHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987666679999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcCCCCccccccchh
Q psy10812 341 VADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLT 420 (723)
Q Consensus 341 IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~~P~IPflG~~L~ 420 (723)
||.+|+++|||||+|||++||++++|+||++||+.|+++.++.|++|..+ +++||++||.+++++.+|||||||+||+
T Consensus 299 iA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l--~~~n~~~yR~~l~~~~~p~IPflg~~L~ 376 (490)
T 2ii0_A 299 ILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLT 376 (490)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHHSCHHHHHHHHHHHHH--HHHHHHHHHHHHHTCCSSCBCCCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhccchhhhHHHHHHHCCHHHHHHHHHHHHh--chHHHHHHHHHHhccCCCcccCcHHHHH
Confidence 99999999999999999999999999999999999999999999999987 3689999999999999999999999999
Q ss_pred chhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHhccCCccchhhhhhHHHhhhhccC
Q psy10812 421 EFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQN 500 (723)
Q Consensus 421 DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~l~~~~~ 500 (723)
||+|+++|||+++++|+..+|||+|+++++++|.+|++||+.+|+|.+++.+++||.+..... +
T Consensus 377 DL~~i~egnp~~~~~~~~~lINf~K~r~~~~ii~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~----------------~ 440 (490)
T 2ii0_A 377 NILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMG----------------N 440 (490)
T ss_dssp HHHHHHHTSCSEEEETTEEEEEHHHHHHHHHHHHHHGGGSSCCCSCCCCHHHHHHHHTCCTTT----------------T
T ss_pred HHHHHHhcCCcccCCCCCeEEcHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHhccccc----------------c
Confidence 999999999999976656699999999999999999999999999999999999997432110 0
Q ss_pred CCcccccchhhHhhhhhcCccccchhHHhhccccccCCCCCC
Q psy10812 501 TPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRTTGR 542 (723)
Q Consensus 501 ~~~~i~~~~~~~~yi~~~~~~i~~ed~Ly~lSl~iEPR~~~~ 542 (723)
. .-.+.||+||++|+++|||....
T Consensus 441 ~------------------~e~~~ed~ly~~Sl~~EPr~~~~ 464 (490)
T 2ii0_A 441 S------------------MEKEFTDYLFNKSLEIEPRNPKP 464 (490)
T ss_dssp S------------------CHHHHHHHHHHHHHHHSCCTTSC
T ss_pred C------------------chhhhHHHHHHHHHhhCCCCCCC
Confidence 0 00012678999999999998654
No 2
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=100.00 E-value=1.9e-61 Score=589.64 Aligned_cols=247 Identities=28% Similarity=0.492 Sum_probs=229.4
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHH
Q psy10812 255 NKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHV 334 (723)
Q Consensus 255 ~~~~l~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~ 334 (723)
...+|++++|.|||+|||++|+++|++|+|.||++++|.+.++...+|||.+++++||++++||+++||.++++++||++
T Consensus 752 ~~~~~~~~~~~e~A~qlt~~~~~~f~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~wv~~~il~~~~~~~R~~~ 831 (999)
T 4f7z_A 752 TVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQL 831 (999)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHCHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred cccchhcCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34578999999999999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcCCCCccc
Q psy10812 335 IEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPY 414 (723)
Q Consensus 335 I~kfI~IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~~P~IPf 414 (723)
|++||+||.+|++||||||+|||++||++++|+||++||+.||+++++.|++|+.||++++||++||.+|+++.+|||||
T Consensus 832 ~~~~i~ia~~~~~l~Nf~~~~ai~~~l~~~~i~RL~~tw~~~~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~p~iP~ 911 (999)
T 4f7z_A 832 LKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPF 911 (999)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHTTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCSSCBCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHcCCchhhhHHHHHHHCCHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCeece
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhchhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHhccCCccchhhhhhHHHh
Q psy10812 415 LGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRD 494 (723)
Q Consensus 415 lG~~L~DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~ 494 (723)
||+||+||+|+++|||++. +| +|||+|+++++++|++|++||+.||++.+.+.++.+
T Consensus 912 ~g~~l~dl~~~~~gn~~~~-~~---linf~k~~~~~~~i~~i~~~q~~~y~~~~~~~~~~~------------------- 968 (999)
T 4f7z_A 912 MPLLIKDMTFTHEGNKTFI-DN---LVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNH------------------- 968 (999)
T ss_dssp HHHHHHHHHHHHHTSCSBS-SS---SEEHHHHHHHHHHHHHHHHHTSSCCCCSSCC--CCC-------------------
T ss_pred ehHHHHHHHHHhccCCCCC-CC---cCcHHHHHHHHHHHHHHHHHhcCCCCCCccchhhhH-------------------
Confidence 9999999999999999998 57 999999999999999999999999999887755432
Q ss_pred hhhccCCCcccccchhhHhhhhhcCccccchhHHhhccccccCCC
Q psy10812 495 ITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRT 539 (723)
Q Consensus 495 l~~~~~~~~~i~~~~~~~~yi~~~~~~i~~ed~Ly~lSl~iEPR~ 539 (723)
..+++|+.+ +.+++|||+||++|+++|||.
T Consensus 969 --------------~~~~~~~~~-~~~~~~~~~l~~~S~~~EPr~ 998 (999)
T 4f7z_A 969 --------------QDVRSYVRQ-LNVIDNQRTLSQMSHRLEPRR 998 (999)
T ss_dssp --------------HHHHHHHHT-CCCCCCHHHHHHHHHTTSCC-
T ss_pred --------------HHHHHHHHh-CCCCCCHHHHHHHHHhcCCCC
Confidence 234555543 356788999999999999996
No 3
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=100.00 E-value=1.8e-60 Score=492.45 Aligned_cols=236 Identities=50% Similarity=0.889 Sum_probs=224.5
Q ss_pred CCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHH
Q psy10812 262 LSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAV 341 (723)
Q Consensus 262 l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I~kfI~I 341 (723)
++|.|||+|||++|+++|++|+|.||+++.|++.++...+||+.+++++||.+++||+++||.++++++||++|++||+|
T Consensus 4 ~~p~eiA~QLTl~d~~lf~~I~~~E~l~~~w~~~~~~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~i 83 (240)
T 2ije_S 4 GSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVAV 83 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGGGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHhhhHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999877667799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcCCCCccccccchhc
Q psy10812 342 ADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTE 421 (723)
Q Consensus 342 A~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~~P~IPflG~~L~D 421 (723)
|.+|+++|||||++||++||++++|+||++||+.|++++++.|++|+.++++++||++||.+++++.+|||||+|+||+|
T Consensus 84 A~~~~~l~Nfns~~aI~~gL~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~D 163 (240)
T 2ije_S 84 ADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTD 163 (240)
T ss_dssp HHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHH
T ss_pred HHHHHhcCCHhHHHHHHHHhccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhcCCCccCccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHhccCCccchhhhhhHHHhhhhccCC
Q psy10812 422 FARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNT 501 (723)
Q Consensus 422 L~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~l~~~~~~ 501 (723)
|+|+++|||++.++| +|||+|+++++++|++|++||+.+|+|.+++.+++||.+.+
T Consensus 164 L~~i~egnp~~~~~~---lINf~K~~~~~~ii~~i~~~q~~~y~~~~~~~i~~~l~~~~--------------------- 219 (240)
T 2ije_S 164 LVFIEEGTPNYTEDG---LVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDES--------------------- 219 (240)
T ss_dssp HHHHHHHSCSBCTTS---CBCHHHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHCCT---------------------
T ss_pred HHHHHhcCCCCCCCC---cCcHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHhCc---------------------
Confidence 999999999999888 99999999999999999999999999999999999986432
Q ss_pred CcccccchhhHhhhhhcCccccchhHHhhccccccCCCC
Q psy10812 502 PYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRTT 540 (723)
Q Consensus 502 ~~~i~~~~~~~~yi~~~~~~i~~ed~Ly~lSl~iEPR~~ 540 (723)
.+.|||+||++|+++|||.+
T Consensus 220 -------------------~~~~e~~ly~~Sl~~EPr~~ 239 (240)
T 2ije_S 220 -------------------FMLDEESLYESSLLIEPKLP 239 (240)
T ss_dssp -------------------TCCCHHHHHHHHHHHSCC--
T ss_pred -------------------CCCCHHHHHHHHHHhCCCCC
Confidence 13568899999999999974
No 4
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=9.7e-59 Score=566.19 Aligned_cols=376 Identities=28% Similarity=0.524 Sum_probs=297.8
Q ss_pred cccccchhhHHH--HHHHHhcCCCCCCC------------CchHHhhhhhccchhcchhhhHHHHHHHHHHhcCCCCCCC
Q psy10812 70 STRSSTSTAATA--FAIATSASSNPRDI------------SPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDFIQ 135 (723)
Q Consensus 70 ~~r~~~~~~a~a--f~i~t~~~~~~~~~------------~~~~~~~~~rke~v~~~~iqlRVlnVLk~Wve~h~~DF~~ 135 (723)
|-|++++ +..- ..|..+....|.+. ...++.+..++++ ..|+|+||++||+.||++||+||.+
T Consensus 630 TyRsF~t-p~elL~lLi~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~ir~rV~~vLk~Wle~~~~DF~~ 706 (1049)
T 3ksy_A 630 TYRSFCK-PQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEY--IQPVQLRVLNVCRHWVEHHFYDFER 706 (1049)
T ss_dssp SCTTTSC-HHHHHHHHHHHHCCCCCCCCHHHHHHTTSSSCCTTHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HhhccCC-HHHHHHHHHHHhccCCCccchhhhhhccccccchhHHHHHHHHhh--ccchhhhHHHHHHHHHHhCcccccC
Confidence 5588887 4444 34555544433211 0113344444543 4799999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhhhhccc-ccccccccc-CCCCCCCchhhcccCHHHHhhhhccc
Q psy10812 136 DKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTK-HETNLQDLL-APPQVANKENIETLSALEIAEQMTYI 213 (723)
Q Consensus 136 ~~~L~~~l~~FL~~i~~~~~~lp~~~k~a~~llr~L~~~~~~~-~~~~~~~~~-~p~~~~~~~~~~~lsa~eiaeq~t~l 213 (723)
|+.+...+.+|++.+... ..++.+.++++.+.+..... ........+ .||.
T Consensus 707 d~~Ll~~L~~Fl~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~pp---------------------- 759 (1049)
T 3ksy_A 707 DAYLLQRMEEFIGTVRGK-----AMKKWVESITKIIQRKKIARDNGPGHNITFQSSPP---------------------- 759 (1049)
T ss_dssp CHHHHHHHHHHHHHCCCT-----THHHHHHHHHHHHHHHHHHHCC---CCCCCCSCCC----------------------
T ss_pred CHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHhhccccCccccccCCCCCC----------------------
Confidence 999999999999996432 34567778888776543211 000000000 0000
Q ss_pred cccccccCchhhhhhhhhhhcccccCCCccccccccccccccccccCCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhh
Q psy10812 214 DYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWL 293 (723)
Q Consensus 214 d~~~~~~i~~~e~l~~~w~~~~k~~~~p~i~~~tq~~~~~~~~~~l~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~ 293 (723)
++. |... ........+|++++|.|||+|||++|+++|++|.|.||+++.|+
T Consensus 760 ------~~~--------~~~~---------------~~~~~~~~~ll~~~~~elA~QLTlid~~lf~~I~p~E~l~~~w~ 810 (1049)
T 3ksy_A 760 ------TVE--------WHIS---------------RPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWT 810 (1049)
T ss_dssp ------CCC--------CCSS---------------CTTCTTTCCTTTSCHHHHHHHHHHHHHHHHHHCCGGGGSSSTTT
T ss_pred ------chh--------hccc---------------CccccCCcccccCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 000 0000 00011346789999999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHHHHHhcCCcchHHHHHHhcccccccccchhh
Q psy10812 294 KSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTW 373 (723)
Q Consensus 294 k~~k~~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I~kfI~IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW 373 (723)
+.++...+||+.+++.+||.+++||+++||.+.++++||++|++||+||.+|+++|||||+|||++||++++|+||++||
T Consensus 811 ~~~~~~~~pn~~~~i~~~n~~s~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW 890 (1049)
T 3ksy_A 811 KEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTF 890 (1049)
T ss_dssp SSCHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSHHHHTCTTTT
T ss_pred CCCcccCCchHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcccchhHhHHHHH
Confidence 98776779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcCCCCccccccchhchhhhcccCCcccCCCCcccccHHHHHHHHHHH
Q psy10812 374 DKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTI 453 (723)
Q Consensus 374 ~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~~P~IPflG~~L~DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI 453 (723)
+.|+++.++.|++|+.+ +++||++||.+++++.+|||||+|+||+||+|+++|||+++++++..+|||+|+++++++|
T Consensus 891 ~~v~~~~~~~~~~l~~l--~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~eg~p~~~~~~~~~lINf~K~~~~~~ii 968 (1049)
T 3ksy_A 891 EQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEIT 968 (1049)
T ss_dssp TSSCHHHHHHHHHHHTT--THHHHHHHHHHHTTCCSSCCCCTHHHHHHHHHHHHHSCSEEEETTEEEEEHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHhh--chHHHHHHHHHHhhCCCCccceeHHHHHHHHHHHccCCccccCCCCCeEcHHHHHHHHHHH
Confidence 99999999999999998 5789999999999999999999999999999999999999854333499999999999999
Q ss_pred HHHHHhhcCCCCCCCChHHHHHHhccCCc--cchhhhhhHHHhhhhccCCCcccccchhhHhhhhhcCccccchhHHhhc
Q psy10812 454 RDITRYQNTPYKIEYNPKVANYILDTSWI--IEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQK 531 (723)
Q Consensus 454 ~~i~~~Q~~~Y~~~~~~~i~~~L~~~~~~--~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~yi~~~~~~i~~ed~Ly~l 531 (723)
.+|++||+.+|+|.+++.|++||.+.... ++++ ..||++|++
T Consensus 969 ~~i~~~Q~~~Y~~~~~~~i~~~l~~l~~~~~~~e~------------------------------------~~~d~ly~l 1012 (1049)
T 3ksy_A 969 GEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEK------------------------------------EFTDYLFNK 1012 (1049)
T ss_dssp HHHHTTTSSCCCCCCCHHHHHHHHSCCTTTTSCHH------------------------------------HHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcchHHHHHHHhcccccccCch------------------------------------hhHHHHHHH
Confidence 99999999999999999999999753211 0100 125789999
Q ss_pred cccccCCCCCC
Q psy10812 532 SMEIEPRTTGR 542 (723)
Q Consensus 532 Sl~iEPR~~~~ 542 (723)
|+++|||....
T Consensus 1013 Sl~~EPr~~~~ 1023 (1049)
T 3ksy_A 1013 SLEIEPRNPKP 1023 (1049)
T ss_dssp HHHHSCCSSSC
T ss_pred HHHhCCCCCCC
Confidence 99999998643
No 5
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=100.00 E-value=3.2e-57 Score=475.66 Aligned_cols=244 Identities=31% Similarity=0.554 Sum_probs=223.9
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHH
Q psy10812 256 KENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVI 335 (723)
Q Consensus 256 ~~~l~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I 335 (723)
..+|++++|.|||+|||++|+++|++|+|.||+++.|++.++...+||+.+++++||.+++||+++||.++++++||++|
T Consensus 25 ~fdil~~~p~elA~QLTlid~~lF~~I~p~E~l~~~w~k~~~~~~~pnl~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i 104 (271)
T 3qxl_A 25 VFDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEIL 104 (271)
T ss_dssp -CCGGGSCHHHHHHHHHHHHHHHHHTCCHHHHHHTCTTSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhccCCcCCCCCcHHHHHHHHhHHHHHHHHHhcccCCHHHHHHHH
Confidence 35789999999999999999999999999999999999876666799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcC-CCCccc
Q psy10812 336 EKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCD-PPCIPY 414 (723)
Q Consensus 336 ~kfI~IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~-~P~IPf 414 (723)
++||+||.+|+++|||||++||++||++++|+||++||+.|+++.++.|++|+.++++++||++||++++++. +|||||
T Consensus 105 ~kfI~IA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~l~~k~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~~p~IPf 184 (271)
T 3qxl_A 105 SHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPY 184 (271)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCCBCC
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHcccchHHHHHHHHHHCCHHHHHHHHHHHHHcCcchhHHHHHHHHHhcCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 899999
Q ss_pred cccchhchhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcC-CCC-CCCChHHHHHHhccCCccchhhhhhHH
Q psy10812 415 LGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNT-PYK-IEYNPKVANYILDTSWIIEDEDMANTI 492 (723)
Q Consensus 415 lG~~L~DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~-~Y~-~~~~~~i~~~L~~~~~~~~~~~~~~~~ 492 (723)
+|+||+||+|+++|||++ +| .++||.|++++++++++|+.||+. +|+ |.++|.|++||.+...+.+
T Consensus 185 lg~~L~DL~fi~~g~p~~--~~--~l~n~~k~~~~~~i~~~I~~~Q~~~~Y~~~~~~~~iq~~l~~~~~i~~-------- 252 (271)
T 3qxl_A 185 LGIYLLDLIYIDSAYPAS--GS--IMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYLKSVRYIEE-------- 252 (271)
T ss_dssp HHHHHHHHHHHHHHSCSS--SC--HHHHHHHHHHHHHHHHHHHHHHHTCCCTTCCCCHHHHHHHHTSCCCGG--------
T ss_pred hHHHHHHHHHHHhcCCCc--cc--ccccHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHhHHHHh--------
Confidence 999999999999999997 33 267899999999999999999998 995 9999999999986543210
Q ss_pred HhhhhccCCCcccccchhhHhhhhhcCccccchhHHhhccccccCC
Q psy10812 493 RDITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPR 538 (723)
Q Consensus 493 ~~l~~~~~~~~~i~~~~~~~~yi~~~~~~i~~ed~Ly~lSl~iEPR 538 (723)
++. .+||++|++|+++||.
T Consensus 253 ------------------~~~---------~~ed~~y~lSl~iEP~ 271 (271)
T 3qxl_A 253 ------------------LQK---------FVEDDNYKLSLRIEPG 271 (271)
T ss_dssp ------------------GHH---------HHHHHHHHHHHHHCC-
T ss_pred ------------------hcC---------CCHHHHHHHHHhcCCC
Confidence 111 1478899999999994
No 6
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=100.00 E-value=3.9e-56 Score=522.50 Aligned_cols=245 Identities=28% Similarity=0.497 Sum_probs=220.8
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHH
Q psy10812 257 ENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIE 336 (723)
Q Consensus 257 ~~l~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~~~pni~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~I~ 336 (723)
.+|.+++|.|||+|||++|+++|++|+|.||+++.|++.++...+||+.+++++||.+++||+++||.++++++||++|+
T Consensus 449 ~~l~~~~~~elA~QLTl~d~~lf~~I~~~E~l~~~~~~~~~~~~~pni~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~ 528 (694)
T 3cf6_E 449 GTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLK 528 (694)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHCGGGTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CchhcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45889999999999999999999999999999999998877778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcCCCCccccc
Q psy10812 337 KWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLG 416 (723)
Q Consensus 337 kfI~IA~~c~~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~~P~IPflG 416 (723)
|||+||.+|+++|||||++||++||++++|+||++||+.|++++++.|++|+.++++++||++||.+++++.+|||||+|
T Consensus 529 ~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~p~IPflg 608 (694)
T 3cf6_E 529 KFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMP 608 (694)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSCSSCBCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCcchhhhHHHHHHCCHHHHHHHHHHHHHhCccccHHHHHHHHHhcCCCCcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhchhhhcccCCcccCCCCcccccHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHhccCCccchhhhhhHHHhhh
Q psy10812 417 MYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDIT 496 (723)
Q Consensus 417 ~~L~DL~fi~egnp~~~~dg~~~LINf~K~r~i~~iI~~i~~~Q~~~Y~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~l~ 496 (723)
+||+||+|+++|||++. +| +|||+|+++++++|++|++||+.||.+.+.+..
T Consensus 609 ~~L~DL~fi~egn~~~~-~~---lINf~K~r~i~~ii~~i~~~q~~~y~~~~~~~~------------------------ 660 (694)
T 3cf6_E 609 LLIKDMTFTHEGNKTFI-DN---LVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN------------------------ 660 (694)
T ss_dssp HHHHHHHHHHHHSCSEE-TT---EEEHHHHHHHHHHHHHHHHHTSSCCC-------------------------------
T ss_pred HHHHHHHHHHcCCCchh-cc---CcCHHHHHHHHHHHHHHHHHhhCCCCcCccccc------------------------
Confidence 99999999999999998 67 999999999999999999999999988653210
Q ss_pred hccCCCcccccchhhHhhhhhcCccccchhHHhhccccccCCC
Q psy10812 497 QYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRT 539 (723)
Q Consensus 497 ~~~~~~~~i~~~~~~~~yi~~~~~~i~~ed~Ly~lSl~iEPR~ 539 (723)
...+.+++|+.+ +.+++|||+||++|+++|||.
T Consensus 661 ---------~~~~~i~~~l~~-l~~~~~e~~l~~lSl~~EPr~ 693 (694)
T 3cf6_E 661 ---------KNHQDVRSYVRQ-LNVIDNQRTLSQMSHRLEPRR 693 (694)
T ss_dssp -----------CHHHHHHHTS-CCCCCCHHHHHHHHHHHCC--
T ss_pred ---------cchHHHHHHHHh-CCCCCCHHHHHHHHHhcCCCC
Confidence 012344455533 345678999999999999996
No 7
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=99.83 E-value=2.3e-22 Score=207.53 Aligned_cols=110 Identities=32% Similarity=0.592 Sum_probs=95.4
Q ss_pred CCCCCCCcccCcccchhHhHhhhhcCCCCCCCccccceeeeeeeeccCCCccCCCCcccccchhhhhhhhhhHHHHHHHH
Q psy10812 546 AQLPNLPLMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQQ 625 (723)
Q Consensus 546 ~~le~l~~~~~~~~n~~~yr~~l~~~~pPciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k~~r~~~~~i~~~i~~~ 625 (723)
+.|++|+.++++++||++||..|+++.||||||+|+||+||||+++|||++.++| +|||+| ++++++++++|++|
T Consensus 124 ~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egnp~~~~~~---lINf~K--~~~~~~ii~~i~~~ 198 (240)
T 2ije_S 124 SLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDG---LVNFSK--MRMISHIIREIRQF 198 (240)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHHHHHHHHHSCSBCTTS---CBCHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCccchHHHHHHHHHhcCCCccCccchHHHHHHHHHhcCCCCCCCC---cCcHHH--HHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999999999999999999999998776 999999 99999999999999
Q ss_pred HHhh-hcccccc-----ccccchHHHHHHHHhccccCCCCC
Q psy10812 626 QQQQ-QQQMEDE-----VSSTSTAATAFAIATSASSNPRDI 660 (723)
Q Consensus 626 q~~~-~~~~~~~-----~~~~~t~s~~~~y~~S~eiEPr~~ 660 (723)
|+.+ ++.+++. ........++.+|++|+++|||+.
T Consensus 199 q~~~y~~~~~~~i~~~l~~~~~~~~e~~ly~~Sl~~EPr~~ 239 (240)
T 2ije_S 199 QQTTYKIDPQPKVIQYLLDESFMLDEESLYESSLLIEPKLP 239 (240)
T ss_dssp HHSCCCCCCCHHHHHHHHCCTTCCCHHHHHHHHHHHSCC--
T ss_pred hcCCCCCCCCHHHHHHHHhCcCCCCHHHHHHHHHHhCCCCC
Confidence 9987 8777776 122223446788999999999973
No 8
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=99.78 E-value=7.2e-21 Score=215.31 Aligned_cols=111 Identities=29% Similarity=0.539 Sum_probs=96.6
Q ss_pred cccchhHhHhhhhcCCCCCCCccccceeeeeeeeccCCCccCCCCcccccchhhhhhhhhhHHHHHHHHHHhh-hccccc
Q psy10812 557 AEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQQQQQQ-QQQMED 635 (723)
Q Consensus 557 ~~~n~~~yr~~l~~~~pPciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k~~r~~~~~i~~~i~~~q~~~-~~~~~~ 635 (723)
+++||++||..+++++||||||+|+||+||||+++||||++++++..+|||+| ++++++|+++|++||+.+ ++.+++
T Consensus 349 ~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~egnp~~~~~~~~~lINf~K--~r~~~~ii~~i~~~Q~~~Y~~~~~~ 426 (490)
T 2ii0_A 349 SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSK--RRKVAEITGEIQQYQNQPYCLRVES 426 (490)
T ss_dssp HHHHHHHHHHHHHTCCSSCBCCCHHHHHHHHHHHHTSCSEEEETTEEEEEHHH--HHHHHHHHHHHGGGSSCCCSCCCCH
T ss_pred chHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHhcCCcccCCCCCeEEcHHH--HHHHHHHHHHHHHHhcCCCCCCccH
Confidence 46899999999999999999999999999999999999999876677999999 999999999999999887 877776
Q ss_pred c-----------ccccchHHHHHHHHhccccCCCCCCCChhhhcc
Q psy10812 636 E-----------VSSTSTAATAFAIATSASSNPRDISPVEEVRNK 669 (723)
Q Consensus 636 ~-----------~~~~~t~s~~~~y~~S~eiEPr~~~~~~~~r~~ 669 (723)
+ ....+.+.++++|++|+++|||+++.+++.+++
T Consensus 427 ~i~~~l~~l~~~~~~~e~~~ed~ly~~Sl~~EPr~~~~~~~~~~~ 471 (490)
T 2ii0_A 427 DIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKK 471 (490)
T ss_dssp HHHHHHHTCCTTTTSCHHHHHHHHHHHHHHHSCCTTSCCCCCCCC
T ss_pred HHHHHHHhccccccCchhhhHHHHHHHHHhhCCCCCCCCCCCCCC
Confidence 6 112344557889999999999998877766654
No 9
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.74 E-value=8.1e-20 Score=222.95 Aligned_cols=108 Identities=16% Similarity=0.246 Sum_probs=93.5
Q ss_pred CCCCCCCcccCcccchhHhHhhhhcCCCCCCCccccceeeeeeeeccCCCccCCCCcccccchhhhhhhhhhHHHHHHHH
Q psy10812 546 AQLPNLPLMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQQ 625 (723)
Q Consensus 546 ~~le~l~~~~~~~~n~~~yr~~l~~~~pPciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k~~r~~~~~i~~~i~~~ 625 (723)
+.|++|+.|||+++||++||..|++++||||||+|+||+||||+++||||++++ ||||+| +++++++|++|++|
T Consensus 879 ~~~~~l~~l~~~~~n~~~yr~~l~~~~~p~iP~~g~~l~dl~~~~~gn~~~~~~----linf~k--~~~~~~~i~~i~~~ 952 (999)
T 4f7z_A 879 KFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDN----LVNFEK--MRMIANTARTVRYY 952 (999)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHHHHHHHHTSCSBSSS----SEEHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHhCCCCeeceehHHHHHHHHHhccCCCCCCC----cCcHHH--HHHHHHHHHHHHHH
Confidence 457788899999999999999999999999999999999999999999999965 999999 99999999999999
Q ss_pred HHhh-hcccccc-----------ccccchHHHHHHHHhccccCCCC
Q psy10812 626 QQQQ-QQQMEDE-----------VSSTSTAATAFAIATSASSNPRD 659 (723)
Q Consensus 626 q~~~-~~~~~~~-----------~~~~~t~s~~~~y~~S~eiEPr~ 659 (723)
|+.| ++.+.+. .+......++.+|++|+++|||-
T Consensus 953 q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~S~~~EPr~ 998 (999)
T 4f7z_A 953 RSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQRTLSQMSHRLEPRR 998 (999)
T ss_dssp TSSCCCCSSCC--CCCHHHHHHHHTCCCCCCHHHHHHHHHTTSCC-
T ss_pred hcCCCCCCccchhhhHHHHHHHHHhCCCCCCHHHHHHHHHhcCCCC
Confidence 9887 7766554 11222345788999999999984
No 10
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=99.73 E-value=1.4e-19 Score=189.72 Aligned_cols=107 Identities=17% Similarity=0.286 Sum_probs=89.4
Q ss_pred CCCCCCCcccCcccchhHhHhhhhcCC-CCCCCccccceeeeeeeeccCCCccCCCCcccccchhhhhhhhhhHHHHHHH
Q psy10812 546 AQLPNLPLMVDAEEKFHNLKSKLQHCD-PPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQ 624 (723)
Q Consensus 546 ~~le~l~~~~~~~~n~~~yr~~l~~~~-pPciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k~~r~~~~~i~~~i~~ 624 (723)
+.|++|+.++++++||++||+.|+++. ||||||+|+||+||||+++|||++ +| .++||.| ++++++|+++|++
T Consensus 151 ~~~~~L~~l~~~~~N~~~yR~~l~~~~~~p~IPflg~~L~DL~fi~~g~p~~--~~--~l~n~~k--~~~~~~i~~~I~~ 224 (271)
T 3qxl_A 151 TTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSAYPAS--GS--IMENEQR--SNQMNNILRIIAD 224 (271)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHTTTTSCCBCCHHHHHHHHHHHHHHSCSS--SC--HHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHhcCCCc--cc--ccccHHH--HHHHHHHHHHHHH
Confidence 357788899999999999999999986 999999999999999999999997 22 2677888 8888999999999
Q ss_pred HHHhh---hcccccc-------c---cccchHHHHHHHHhccccCCC
Q psy10812 625 QQQQQ---QQQMEDE-------V---SSTSTAATAFAIATSASSNPR 658 (723)
Q Consensus 625 ~q~~~---~~~~~~~-------~---~~~~t~s~~~~y~~S~eiEPr 658 (723)
||..| ++.+.|. . .......++.+|++|++|||+
T Consensus 225 ~Q~~~~Y~~~~~~~~iq~~l~~~~~i~~~~~~~ed~~y~lSl~iEP~ 271 (271)
T 3qxl_A 225 LQVSCSYDHLTTLPHVQKYLKSVRYIEELQKFVEDDNYKLSLRIEPG 271 (271)
T ss_dssp HHHTCCCTTCCCCHHHHHHHHTSCCCGGGHHHHHHHHHHHHHHHCC-
T ss_pred HhhhccCCCCCCChHHHHHHHHhHHHHhhcCCCHHHHHHHHHhcCCC
Confidence 99884 4777776 1 111235788999999999995
No 11
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}
Probab=99.73 E-value=3.6e-18 Score=179.17 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=120.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCC--CChh----HHHHHHHHHHHHHHHHHHhcCCCC-hhh
Q psy10812 258 NIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLT--KAPH----IVLFTQRFNTMSKLVANEILNRSN-LSQ 330 (723)
Q Consensus 258 ~l~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~--~~pn----i~~~i~~fN~ls~wV~~~IL~~~~-~~~ 330 (723)
-|.+.+|.++|+|||.+|+++++.....+-....++.....+ .-|+ -..+++|||.++.||+.+||.+.. .++
T Consensus 43 lL~~~~~~~lA~hlt~~D~~lar~l~~t~~~~~~mgv~sglELitlPhG~qlRldlleR~~~l~~wva~~IL~C~~~~~e 122 (333)
T 3t6a_A 43 LFTNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHGHQLRLDIIERHNTMAIGIAVDILGCTGTLED 122 (333)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTTSSCCCHHHHHHHSSSCHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHH
T ss_pred HHhccChHHHHHHHHHHHHHHHHhcCCcHHHHhhhcCCCcceEEEeeccchhhhHHHHHhcccHHHHHHHHHhCCCchHH
Confidence 367889999999999999999877655443333333211000 0122 246899999999999999999864 889
Q ss_pred hHHHHHHHHHHHHHHH-hcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcC-
Q psy10812 331 RVHVIEKWIAVADILK-CLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCD- 408 (723)
Q Consensus 331 Ra~~I~kfI~IA~~c~-~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~- 408 (723)
|+.+++|||+||.+|+ .++|++|++||+.||++++|+||++||+.+++++++.+-.+++.+.|. .+.+-+--..+.
T Consensus 123 R~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVSRL~~TW~~Lr~k~te~ai~yEk~LkP~--~k~lneG~~~~~~ 200 (333)
T 3t6a_A 123 RAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRHQYTQTAILYEKQLKPF--SKLLHEGRESTCV 200 (333)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHHTCHHHHHHHHHHSHHHHHHHHHTHHHH--HHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHHHHHHHHHHhhHHhhHHHHHHHHHhhHH--HHHhhCCCCCCCC
Confidence 9999999999999999 899999999999999999999999999999999999776666665542 122222211222
Q ss_pred ---CCCccccccch
Q psy10812 409 ---PPCIPYLGMYL 419 (723)
Q Consensus 409 ---~P~IPflG~~L 419 (723)
.-|||++-.++
T Consensus 201 ~~~~~t~Phv~Pl~ 214 (333)
T 3t6a_A 201 PPNNVSVPLLMPLV 214 (333)
T ss_dssp CTTCCSBCCCHHHH
T ss_pred CCCCccchhHHHHH
Confidence 25788886554
No 12
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=2.6e-18 Score=180.11 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=123.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHccCChHHhhhhhhhcCCCCC--CChh----HHHHHHHHHHHHHHHHHHhcCCC-Chhh
Q psy10812 258 NIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLT--KAPH----IVLFTQRFNTMSKLVANEILNRS-NLSQ 330 (723)
Q Consensus 258 ~l~~l~p~eIA~QLTlid~~lF~~I~p~Ell~~~w~k~~k~~--~~pn----i~~~i~~fN~ls~wV~~~IL~~~-~~~~ 330 (723)
-|.+.+|.++|+|||.+|+++|+.....+-....++.....+ .-|+ -..+++|||.+..||+.+||.+. +..+
T Consensus 44 lL~~~~~~~lA~hlt~~D~~l~~~l~vt~~~~~~mgv~sglELitlPhG~qlRldlleR~~~l~~~va~~IL~c~g~~~~ 123 (331)
T 3t6g_A 44 LLAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGSTGSAEE 123 (331)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHTTSSSCCHHHHHHHSSSCHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTCCSCHHH
T ss_pred HHhccChHHHHHHHHHHHHHHHHhcCCCHHHHhhhcCCCcceeEEecccchhhHHHHHHhcchHHHHHHHHhcCCCCHHH
Confidence 367899999999999999999988655444433333211000 0122 24689999999999999999996 8999
Q ss_pred hHHHHHHHHHHHHHHH-hcCCcchHHHHHHhcccccccccchhhhhhCcchHHHHHHHhhhcCCCccHHHHHHhhhhcC-
Q psy10812 331 RVHVIEKWIAVADILK-CLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCD- 408 (723)
Q Consensus 331 Ra~~I~kfI~IA~~c~-~L~NFnsl~AIisgL~ss~I~RLk~TW~~vs~k~~~~~~~L~~L~s~~~N~~~yR~~L~~~~- 408 (723)
|+.+++|||+||.+|+ .++|++|++||+.||+++.|+||++||..+++++.+.+-.+++.+.|. .+.|..+.
T Consensus 124 Ra~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqVsRLe~TW~~Lr~k~te~Ai~yEk~LkP~------~k~lneg~~ 197 (331)
T 3t6g_A 124 RAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTEGAILYEKKLKPF------LKSLNEGKE 197 (331)
T ss_dssp HHHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHHHTCHHHHHHHHHHCHHHHHHHHHTHHHH------HHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHH------HHHHhCCCC
Confidence 9999999999999999 999999999999999999999999999999999999877777665542 23344433
Q ss_pred -----CCCccccccchh
Q psy10812 409 -----PPCIPYLGMYLT 420 (723)
Q Consensus 409 -----~P~IPflG~~L~ 420 (723)
.-|||++..+++
T Consensus 198 ~~~~~~~~~Phl~Pl~~ 214 (331)
T 3t6g_A 198 GPPLSNTTFPHVLPLIT 214 (331)
T ss_dssp CSCGGGCSBCCCHHHHH
T ss_pred CCCCCCCccchHHHHHH
Confidence 257888865543
No 13
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.72 E-value=2.1e-19 Score=219.85 Aligned_cols=119 Identities=28% Similarity=0.503 Sum_probs=99.6
Q ss_pred CCCCCcccCcccchhHhHhhhhcCCCCCCCccccceeeeeeeeccCCCccCCCCcccccchhhhhhhhhhHHHHHHHHHH
Q psy10812 548 LPNLPLMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQQQQ 627 (723)
Q Consensus 548 le~l~~~~~~~~n~~~yr~~l~~~~pPciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k~~r~~~~~i~~~i~~~q~ 627 (723)
|+++..+ +++||++||..|++++||||||+|+||+||||+++|||||+++++..+|||+| ++++++|+++|++||+
T Consensus 901 ~~~l~~l--~~~n~~~yR~~l~~~~~p~IPflg~~L~DL~~i~eg~p~~~~~~~~~lINf~K--~~~~~~ii~~i~~~Q~ 976 (1049)
T 3ksy_A 901 LEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSK--RRKVAEITGEIQQYQN 976 (1049)
T ss_dssp HHHHHTT--THHHHHHHHHHHTTCCSSCCCCTHHHHHHHHHHHHHSCSEEEETTEEEEEHHH--HHHHHHHHHHHHTTTS
T ss_pred HHHHHhh--chHHHHHHHHHHhhCCCCccceeHHHHHHHHHHHccCCccccCCCCCeEcHHH--HHHHHHHHHHHHHHhc
Confidence 4444444 57899999999999999999999999999999999999999765556999999 9999999999999998
Q ss_pred hh-hcccccc-----------ccccchHHHHHHHHhccccCCCCCCCChhhhccc
Q psy10812 628 QQ-QQQMEDE-----------VSSTSTAATAFAIATSASSNPRDISPVEEVRNKR 670 (723)
Q Consensus 628 ~~-~~~~~~~-----------~~~~~t~s~~~~y~~S~eiEPr~~~~~~~~r~~~ 670 (723)
.| ++.+++. ...++.+.++.+|++|+++|||+++.+++.++++
T Consensus 977 ~~Y~~~~~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~~EPr~~~~~~~~~~~~ 1031 (1049)
T 3ksy_A 977 QPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKY 1031 (1049)
T ss_dssp SCCCCCCCHHHHHHHHSCCTTTTSCHHHHHHHHHHHHHHHSCCSSSCCCCCCCCC
T ss_pred CCCCCCcchHHHHHHHhcccccccCchhhHHHHHHHHHHhCCCCCCCCCCCCccc
Confidence 77 8887776 1223455678899999999999987766655543
No 14
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.65 E-value=3.2e-18 Score=201.10 Aligned_cols=108 Identities=16% Similarity=0.254 Sum_probs=88.6
Q ss_pred CCCCCCCcccCcccchhHhHhhhhcCCCCCCCccccceeeeeeeeccCCCccCCCCcccccchhhhhhhhhhHHHHHHHH
Q psy10812 546 AQLPNLPLMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQQQQ 625 (723)
Q Consensus 546 ~~le~l~~~~~~~~n~~~yr~~l~~~~pPciPf~g~~l~dltfi~~gn~~~~~~~~~~linf~k~~r~~~~~i~~~i~~~ 625 (723)
+.|++|+.++++++||++||..+++++||||||+|+||+||||+++||||++++ +|||+| ++++++++.+|++|
T Consensus 574 ~~~~~L~~l~~~~~N~~~yR~~l~~~~~p~IPflg~~L~DL~fi~egn~~~~~~----lINf~K--~r~i~~ii~~i~~~ 647 (694)
T 3cf6_E 574 KFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDN----LVNFEK--MRMIANTARTVRYY 647 (694)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHSCSSCBCCHHHHHHHHHHHHHHSCSEETT----EEEHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccHHHHHHHHHhcCCCCcccHHHHHHHHHHHHcCCCchhcc----CcCHHH--HHHHHHHHHHHHHH
Confidence 357788889999999999999999999999999999999999999999999864 999999 99999999999999
Q ss_pred HHhh-hcccc------cc-----ccccchHHHHHHHHhccccCCCC
Q psy10812 626 QQQQ-QQQME------DE-----VSSTSTAATAFAIATSASSNPRD 659 (723)
Q Consensus 626 q~~~-~~~~~------~~-----~~~~~t~s~~~~y~~S~eiEPr~ 659 (723)
|+.| ++... ++ .+...-..++.+|++|+++|||.
T Consensus 648 q~~~y~~~~~~~~~~~~~i~~~l~~l~~~~~e~~l~~lSl~~EPr~ 693 (694)
T 3cf6_E 648 RSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQRTLSQMSHRLEPRR 693 (694)
T ss_dssp TSSCCC---------CHHHHHHHTSCCCCCCHHHHHHHHHHHCC--
T ss_pred hhCCCCcCccccccchHHHHHHHHhCCCCCCHHHHHHHHHhcCCCC
Confidence 9987 44432 22 11122234678999999999985
Done!