RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10812
(723 letters)
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS
guanine nucleotide releasing FACT specific nucleotide
exchange factor; 2.20A {Mus musculus}
Length = 240
Score = 283 bits (725), Expect = 6e-91
Identities = 117/278 (42%), Positives = 173/278 (62%), Gaps = 43/278 (15%)
Query: 262 LSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANE 321
SALEIAEQ+T +D+ +FKSI EEF GQ W+K+EK + P+I+ T+ FN +S +A+E
Sbjct: 4 GSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASE 63
Query: 322 ILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTK 381
I+ ++S R IEKW+AVADI +CL+N+N VL I S++N S++FRLKKTW KVSK TK
Sbjct: 64 IIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTK 123
Query: 382 QTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLV 441
D+L+++V ++ F N + L++CDPPC+PYLGMYLT+ ++E P +T++G LV
Sbjct: 124 SLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDG---LV 180
Query: 442 NFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNT 501
NF+K+R +++ IR+I ++Q T YKI+ PKV Y+LD S
Sbjct: 181 NFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDES--------------------- 219
Query: 502 PYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRT 539
+ DE+ L++ S+ IEP+
Sbjct: 220 -------------------FMLDEESLYESSLLIEPKL 238
Score = 81.6 bits (202), Expect = 2e-17
Identities = 30/55 (54%), Positives = 41/55 (74%)
Query: 201 LSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVAN 255
SALEIAEQ+T +D+ +FKSI EEF GQ W+K+EK + P+I+ T+ FN V+N
Sbjct: 4 GSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSN 58
Score = 60.4 bits (147), Expect = 3e-10
Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 555 VDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR-- 612
V ++ +F NL+ L++CDPPC+PYLGMYLT+L ++E P +T++G N F+K+R
Sbjct: 133 VSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVN---FSKMRMIS 189
Query: 613 RKLKPLQHQQQQ 624
++ ++ QQ
Sbjct: 190 HIIREIRQFQQT 201
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 290 bits (743), Expect = 2e-85
Identities = 101/451 (22%), Positives = 183/451 (40%), Gaps = 91/451 (20%)
Query: 104 KRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKA 163
KR +RVLNV RHW+ H DF +D L EF+ + E
Sbjct: 675 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESIT 734
Query: 164 ATQLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRS 223
+ + ++ H Q +++HI +
Sbjct: 735 KIIQRKKIARDNGPGHNITFQSSPPT-----------------------VEWHISRPGHI 771
Query: 224 EEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIR 283
E F ++ TL +EIA Q+T ++ ++++++
Sbjct: 772 ETF-------------------------------DLLTLHPIEIARQLTLLESDLYRAVQ 800
Query: 284 SEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVAD 343
E +G W K +K +P+++ + ++ I+ NL +RV V+ + I +
Sbjct: 801 PSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQ 860
Query: 344 ILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSK 403
+ + LNNFNGVL ++SAMN+S V+RL T++++ K+ +E ++ + +++ + +K
Sbjct: 861 VFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSE--DHYKKYLAK 918
Query: 404 LQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTP 463
L+ +PPC+P+ G+YLT + +E P K L+NF+K R++A +I +YQN P
Sbjct: 919 LRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQP 978
Query: 464 YKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIE 523
Y + + + + + + + E
Sbjct: 979 YCLRVESDIKRFFENLNPMGNSME----------------------------------KE 1004
Query: 524 DEDVLHQKSMEIEPRT-TGRPSCAQLPNLPL 553
D L KS+EIEPR P + + PL
Sbjct: 1005 FTDYLFNKSLEIEPRNPKPLPRFPKKYSYPL 1035
Score = 55.6 bits (133), Expect = 5e-08
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 561 FHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR--RKLKPL 618
+ +KL+ +PPC+P+ G+YLT + +E P K L+ F+K R+ +
Sbjct: 912 YKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEI 971
Query: 619 QHQQQQ 624
Q Q Q
Sbjct: 972 QQYQNQ 977
Score = 39.4 bits (91), Expect = 0.005
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 669 KRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLDF 723
KR +RVLNV RHW+ H DF +D L EF+ + +
Sbjct: 675 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKW 729
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
1nvw_S* 1nvx_S* 1bkd_S
Length = 490
Score = 270 bits (691), Expect = 8e-83
Identities = 79/314 (25%), Positives = 149/314 (47%), Gaps = 37/314 (11%)
Query: 241 PHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTK 300
P V + ++ TL +EIA Q+T ++ ++++++ E +G W K +K
Sbjct: 199 PPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEIN 258
Query: 301 APHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISA 360
+P+++ + ++ I+ NL +RV V+ + I + + + LNNFNGVL ++SA
Sbjct: 259 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 318
Query: 361 MNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLT 420
MN+S V+RL T++++ K+ +E ++ + +++ + +KL+ +PPC+P+ G+YLT
Sbjct: 319 MNSSPVYRLDHTFEQIPSRQKKILEEAHELSE--DHYKKYLAKLRSINPPCVPFFGIYLT 376
Query: 421 EFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTS 480
+ +E P K L+NF+K R++A +I +YQN PY + + + + +
Sbjct: 377 NILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLN 436
Query: 481 WIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRTT 540
+ + E D L KS+EIEPR
Sbjct: 437 PMGNSME----------------------------------KEFTDYLFNKSLEIEPRNP 462
Query: 541 G-RPSCAQLPNLPL 553
P + + PL
Sbjct: 463 KPLPRFPKKYSYPL 476
Score = 55.5 bits (133), Expect = 4e-08
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 561 FHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR--RKLKPL 618
+ +KL+ +PPC+P+ G+YLT + +E P K L+ F+K R+ +
Sbjct: 353 YKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEI 412
Query: 619 QHQQQQ 624
Q Q Q
Sbjct: 413 QQYQNQ 418
Score = 37.7 bits (87), Expect = 0.013
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 669 KRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPN 720
KR +RVLNV RHW+ H DF +D L EF+ +
Sbjct: 116 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAM 167
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain
homology, guanine-nucleotide exchange factor, S GTPase
RAL subfamily; 2.24A {Homo sapiens}
Length = 271
Score = 262 bits (672), Expect = 1e-82
Identities = 76/290 (26%), Positives = 135/290 (46%), Gaps = 42/290 (14%)
Query: 251 NTVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQR 310
+ A ++ ++ E A Q+T +D +FK+I+ EE W K EK + AP++V FT+R
Sbjct: 20 SYDAVVFDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRR 79
Query: 311 FNTMSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLK 370
FN +S V EIL L R ++ ++ +A L LNN + +++++SA+ ++ +FRL
Sbjct: 80 FNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLT 139
Query: 371 KTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHC-DPPCIPYLGMYLTEFARLDEEY 429
KTW +++ K T+++L ++ E+N+ + ++ P IPYLG+YL + +D Y
Sbjct: 140 KTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSAY 199
Query: 430 PTFTKEGETNLVNFTKIRRMANTIRDITRYQN--TPYKIEYNPKVANYILDTSWIIEDED 487
P + + N + +M N +R I Q + + P V Y+ +I E +
Sbjct: 200 PAS----GSIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYLKSVRYIEELQK 255
Query: 488 MANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEP 537
ED ++ S+ IEP
Sbjct: 256 F-----------------------------------VEDDNYKLSLRIEP 270
Score = 51.6 bits (124), Expect = 2e-07
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 546 AQLPNLPLMVDAEEKFHNLKSKLQHC-DPPCIPYLGMYLTELATLDEVYPTFTKEGETNL 604
L ++ E+ + + ++ P IPYLG+YL +L +D YP + +
Sbjct: 151 TTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSAYPAS----GSIM 206
Query: 605 VYFTKIRR--RKLKPLQHQQQQQQ 626
+ + L+ + Q
Sbjct: 207 ENEQRSNQMNNILRIIADLQVSCS 230
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 266 bits (681), Expect = 3e-79
Identities = 86/433 (19%), Positives = 165/433 (38%), Gaps = 43/433 (9%)
Query: 106 KESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAAT 165
KE + ++ ++ K + +Q + + I + +L Y
Sbjct: 303 KEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDH 362
Query: 166 QLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEE 225
T + + E + I +++ + D +F ++
Sbjct: 363 TYTTIRVPVAASVKEVI-SAVADKLGSGEGLIIVKMNSGGEKVVLKSNDVSVFTTL---T 418
Query: 226 FLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSE 285
G+ + + + L Q T E +S+ ++A QMT D+ +F +
Sbjct: 419 INGRLFACPREQFDSL-TPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHEL 477
Query: 286 EFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADIL 345
E + + + ++ LF +RFN + V E+ S LS+RV +++K+I +A
Sbjct: 478 ELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHC 537
Query: 346 KCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQ 405
K N N I+ ++N +V RL TW+K+ K+ Y E ++D N ++
Sbjct: 538 KEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAA 597
Query: 406 HCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYK 465
+PP IP++ + + + E TF NLVNF K+R +ANT R + Y++ P+
Sbjct: 598 KLEPPLIPFMPLLIKDMTFTHEGNKTFID----NLVNFEKMRMIANTARTVRYYRSQPFN 653
Query: 466 IEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIEDE 525
+ N+ V +Y+ + +I+++
Sbjct: 654 PDAAQANKNH---------------------------------QDVRSYVRQLN-VIDNQ 679
Query: 526 DVLHQKSMEIEPR 538
L Q S +EPR
Sbjct: 680 RTLSQMSHRLEPR 692
Score = 49.8 bits (118), Expect = 3e-06
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 555 VDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR-- 612
+D + +PP IP++ + + ++ E TF NLV F K+R
Sbjct: 583 MDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFID----NLVNFEKMRMIA 638
Query: 613 RKLKPLQHQQQQ 624
+ +++ + Q
Sbjct: 639 NTARTVRYYRSQ 650
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 267 bits (683), Expect = 2e-77
Identities = 88/434 (20%), Positives = 165/434 (38%), Gaps = 45/434 (10%)
Query: 106 KESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAAT 165
KE + ++ ++ K + +Q + + I + +L Y
Sbjct: 608 KEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDH 667
Query: 166 QLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEE 225
T + + E + I +++ + D +F ++
Sbjct: 668 TYTTIRVPVAASVKEVI-SAVADKLGSGEGLIIVKMNSGGEKVVLKSNDVSVFTTLTING 726
Query: 226 FLGQAWLKS-EKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRS 284
L + + LT P Q T E +S+ ++A QMT D+ +F +
Sbjct: 727 RLFACPREQFDSLTPLP-----EQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHE 781
Query: 285 EEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVADI 344
E + + + ++ LF +RFN + V E+ S LS+RV +++K+I +A
Sbjct: 782 LELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAH 841
Query: 345 LKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKL 404
K N N I+ ++N +V RL TW+K+ K+ Y E ++D N ++
Sbjct: 842 CKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTA 901
Query: 405 QHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPY 464
+PP IP++ + + + E TF NLVNF K+R +ANT R + Y++ P+
Sbjct: 902 AKLEPPLIPFMPLLIKDMTFTHEGNKTFID----NLVNFEKMRMIANTARTVRYYRSQPF 957
Query: 465 KIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIED 524
+ N+ V +Y+ + +I++
Sbjct: 958 NPDAAQANKNH---------------------------------QDVRSYVRQLN-VIDN 983
Query: 525 EDVLHQKSMEIEPR 538
+ L Q S +EPR
Sbjct: 984 QRTLSQMSHRLEPR 997
Score = 50.2 bits (119), Expect = 2e-06
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 555 VDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR-- 612
+D + +PP IP++ + + ++ E TF NLV F K+R
Sbjct: 888 MDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFID----NLVNFEKMRMIA 943
Query: 613 RKLKPLQHQQQQ 624
+ +++ + Q
Sbjct: 944 NTARTVRYYRSQ 955
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology
domain, GTPase exchange factor, signaling Pro; HET: POG;
2.40A {Homo sapiens}
Length = 333
Score = 139 bits (350), Expect = 2e-36
Identities = 41/241 (17%), Positives = 78/241 (32%), Gaps = 23/241 (9%)
Query: 256 KENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKA------PHIVLFTQ 309
KE IA+ + +D + + + E + + S L + +
Sbjct: 41 KELFTNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHGHQLRLDIIE 100
Query: 310 RFNTMSKLVANEILNRS-NLSQRVHVIEKWIAVADILK-CLNNFNGVLTIISAMNNSSVF 367
R NTM+ +A +IL + L R + K I VA LK + + ++ A+ +
Sbjct: 101 RHNTMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQIT 160
Query: 368 RLKKTWDKVSKTTKQTYDELRQVVDAEENFHN--FKSKLQHCDPPCIPYLGMYLTEFARL 425
RL+KTW + QT + + + +S + +P L +T
Sbjct: 161 RLEKTWTALRHQYTQTAILYEKQLKPFSKLLHEGRESTCVPPNNVSVPLLMPLVT----- 215
Query: 426 DEEYPTFTKEGETNL--------VNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYIL 477
E T EG + + Y+ +I + +
Sbjct: 216 LMERQAVTFEGTDMWEKNDQSCEIMLNHLATARFMAEAADSYRMNAERILAGFQPDEEMN 275
Query: 478 D 478
+
Sbjct: 276 E 276
Score = 28.6 bits (63), Expect = 7.6
Identities = 11/80 (13%), Positives = 19/80 (23%), Gaps = 5/80 (6%)
Query: 563 NLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRRRKLKPLQHQQ 622
+S + +P L +T T EG + L L +
Sbjct: 194 GRESTCVPPNNVSVPLLMPLVT-----LMERQAVTFEGTDMWEKNDQSCEIMLNHLATAR 248
Query: 623 QQQQQQQQQQMEDEVSSTST 642
+ +M E
Sbjct: 249 FMAEAADSYRMNAERILAGF 268
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase
exchange factor, focal-adhesio targeting domain,
signaling protein; 2.50A {Homo sapiens}
Length = 331
Score = 124 bits (313), Expect = 1e-31
Identities = 34/211 (16%), Positives = 79/211 (37%), Gaps = 9/211 (4%)
Query: 256 KENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEK--LTKAPHI----VLFTQ 309
KE + + A +A +T +D + + + + + L PH + +
Sbjct: 42 KELLAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLE 101
Query: 310 RFNTMSKLVANEILNRS-NLSQRVHVIEKWIAVADILK-CLNNFNGVLTIISAMNNSSVF 367
RF+TMS ++A +IL + + +R ++ K I +A L+ + N ++ A++ + +
Sbjct: 102 RFHTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQIS 161
Query: 368 RLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDE 427
RL++TW + + + + + N + P++ +T D
Sbjct: 162 RLEQTWVTLRQRHTEGAILYEKKLKPFLKSLNEGKEGPPLSNTTFPHVLPLITLLES-DS 220
Query: 428 EYPTFTKEGETNLVNFTKIRRMANTIRDITR 458
P + + + R +
Sbjct: 221 APPEGPEPWGSTEHGVEVVLAHLEAARTVAH 251
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 83.0 bits (204), Expect = 2e-16
Identities = 99/676 (14%), Positives = 215/676 (31%), Gaps = 201/676 (29%)
Query: 120 NVLRHWISKHTQDF----IQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEE 175
++L + +F +QD ++ E ++ I+ + + + + +L+K+E
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLLSKQE 76
Query: 176 CTKH---ETNLQD----LLAP-------PQVANKENIETLSALEIAEQMTYIDYHIFKSI 221
E L+ L++P P + + IE L Q+ + Y++
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNV---S 132
Query: 222 RSEEFLG-QAWLKSEKLTKAPHIVLF-------TQRFNTVANKENIETLSALEIAEQMTY 273
R + +L + L +L A ++++ T VA ++ + ++ +M
Sbjct: 133 RLQPYLKLRQALL--ELRPAKNVLIDGVLGSGKT----WVA----LDVCLSYKVQCKM-- 180
Query: 274 IDYHIFKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNT-MSKLVANEILNRSNLSQRV 332
D+ IF WL + ++ Q+ + + + SN+ R+
Sbjct: 181 -DFKIF------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 333 HVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVD 392
H I+ + L + L ++ + N+ + ++ K T +QV D
Sbjct: 228 HSIQAEL---RRLLKSKPYENCLLVLLNVQNAKAW---NAFNLSCKILLTTRF--KQVTD 279
Query: 393 AEENFHNFKSKLQHCDPPCIPYLGMYLTEFARLDEEYPTFTK-EGETNLVNFTKIR---- 447
L T LD T T E ++ L+ + R
Sbjct: 280 F---------------------LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 448 -RMANTI------------RD-ITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIR 493
R T RD + + N + N I+++S + + A
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKH---VNCDKLTTIIESS--LNVLEPA---- 369
Query: 494 DITQYQNTPYK----IEYNPKVANYILDTSWI-IEDEDV------LHQKSMEIEPRTTGR 542
+ + + + + +L W + DV LH+ S+ +E + +
Sbjct: 370 EYRKM----FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQ--PK 422
Query: 543 PSCAQLPNLPLM----VDAEEKFH-------NLKSKLQ--HCDPPCI-----PYLGMYLT 584
S +P++ L ++ E H N+ PP + ++G +L
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 585 ELATLDEVYPTFTKEGETNLVYF------TKIRRRKLKPLQHQQQQQQQQQQQQMEDEVS 638
E F V+ KIR
Sbjct: 483 N-IEHPERMTLFRM------VFLDFRFLEQKIRH-------------------------D 510
Query: 639 STSTAATAFAIATSASSNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQDF 698
ST+ A+ + T +++++ + + R++N + ++ K ++
Sbjct: 511 STAWNASGSILNT-----------LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 699 IQDKELRYMTLEFLEE 714
I K + + + E
Sbjct: 560 ICSKYTDLLRIALMAE 575
Score = 59.1 bits (142), Expect = 5e-09
Identities = 42/326 (12%), Positives = 89/326 (27%), Gaps = 88/326 (26%)
Query: 391 VDAEENFHNFKSK--LQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVN----FT 444
+D E H ++ K L + + + D +KE +++ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ----DMPKSILSKEEIDHIIMSKDAVS 62
Query: 445 KIRRMANTIRDITRYQNTPYKIEYNPKVA-NYILDTSWIIEDEDMANTIRDITQYQNTPY 503
R+ T+ Q + + NY +++ P
Sbjct: 63 GTLRLFWTLLS---KQEEMVQKFVEEVLRINY----KFLMS-----------------PI 98
Query: 504 KIEYNPKVANYILDTSWIIEDEDVLHQKSMEIEPRTTGRPSCAQLPNLPLMVDAEEKFHN 563
K E + T IE D L+ + R + +
Sbjct: 99 KTEQRQPS----MMTRMYIEQRDRLYNDNQVFAKYNVSRL---------------QPYLK 139
Query: 564 LKSKLQHCDPPCIPYL---GM------YLTELATLDE-VYPTFTKEGETNLVYFTKIRRR 613
L+ L P + G+ ++ L V + +++ ++
Sbjct: 140 LRQALLELRP--AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-----IFWLNLKNC 192
Query: 614 KLKPLQHQQQQQQQQQQQQMEDEVSSTSTAATAFAIATSASSNPRDISPVEEVRNKRKES 673
P + Q+ Q++ +S S SSN + + ++
Sbjct: 193 N-SP--ETVLEMLQKLLYQIDPNWTSRS----------DHSSNIKL--RIHSIQA-ELRR 236
Query: 674 VLSTATTMRVLNVLRH-WISKHTQDF 698
+L + L VL + +K F
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAF 262
Score = 51.4 bits (122), Expect = 1e-06
Identities = 74/501 (14%), Positives = 134/501 (26%), Gaps = 188/501 (37%)
Query: 21 SIGCCEGESA--------ARQATPRASFQQDSPQ------HSSKAGVVITSFRKSQRSLL 66
++ C Q P + + D HS +A + K + L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 67 LIFSTRSSTSTAATAFAI-----ATSASSNPRDISPVEEVRNKRKESVLSTATTMRVLNV 121
L+ + AF + T+ D + + T T V ++
Sbjct: 248 LVLLNVQNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 122 LRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHET 181
L ++ QD LP +E T +
Sbjct: 307 LLKYLDCRPQD------------------------LP--------------REVLTTN-- 326
Query: 182 NLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLK--SEKLTK 239
P +++ + A I + + D W +KLT
Sbjct: 327 -------PRRLS-------IIAESIRDGLATWDN---------------WKHVNCDKLTT 357
Query: 240 APHIVLFTQRFNTVANKENIE-TLSALEIAE-QMTYIDYHIF-KSIR-SEEFLGQAWLKS 295
IE +L+ LE AE + + +F S L W
Sbjct: 358 I------------------IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 296 EKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKW-----IAVADI---LKC 347
K + +V N++ S ++EK I++ I LK
Sbjct: 400 IK---------------SDVMVVVNKLHKYS-------LVEKQPKESTISIPSIYLELKV 437
Query: 348 LNNFNGVL--TIISAMNNSSVFRLKKTWDKVSKTTKQTYDE---------LRQVVDAEE- 395
L +I+ + + KT+D D+ L+ + E
Sbjct: 438 KLENEYALHRSIVDH------YNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 396 --------NFHNFKSKLQHCDPPCIPYLGM------------YLTE----FARLDEEYPT 431
+F + K++H + Y+ + + RL
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 432 FTKEGETNLVN--FTKIRRMA 450
F + E NL+ +T + R+A
Sbjct: 551 FLPKIEENLICSKYTDLLRIA 571
Score = 49.5 bits (117), Expect = 4e-06
Identities = 67/472 (14%), Positives = 125/472 (26%), Gaps = 161/472 (34%)
Query: 304 IVLFTQRFNTMSKLVANEILN--RSNLSQRVHVIEKWIAVADILKCLNNFNGV---LTII 358
+ +F F + ++ + +S LS+ + I+ + +G +
Sbjct: 22 LSVFEDAF--VDNFDCKDVQDMPKSILSKEE--------IDHIIMSKDAVSGTLRLFWTL 71
Query: 359 SAMNNSSVFR-----LKKT----WDKVSKTTKQT------YDELRQV------------V 391
+ V + L+ + +Q Y E R V
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 392 DAEENFHNFKSKLQHCDPPCIPYL---GMYLTEFARLDEEYPTFTKEGETNLVNFTKIRR 448
+ + + L P + G+ G+T +
Sbjct: 132 SRLQPYLKLRQALLELRP--AKNVLIDGV------------LGS---GKTWVA------- 167
Query: 449 MANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRD---ITQYQNTPYKI 505
+ +KI W+ ++ N + Q Y+I
Sbjct: 168 -LDVCLSYKVQCKMDFKI-------------FWL----NLKNCNSPETVLEMLQKLLYQI 209
Query: 506 EYNPKV-----ANYILDTSWII-EDEDVLHQKSMEIEPRTTGRPSCAQLPNLPLMV---- 555
+ N +N L I E +L K +C L+V
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---------YENC-------LLVLLNV 253
Query: 556 -DAE--EKFHNLKSK--LQHCDPPCIPYLGMYLTELATLDEVYPTFTK-EGETNLVYFTK 609
+A+ F NL K L +L T +LD T T E ++ L+ +
Sbjct: 254 QNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 610 IRRRKLKPLQHQQQQQQQQQQQQMEDEVSSTSTAATAFAIATSASSNPRDISPVEEVRNK 669
R + L EV +T+ + IA S + V
Sbjct: 313 CRPQDLPR------------------EVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCD 353
Query: 670 RKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELR--YMTLEFLEEIVCTP 719
+ +++ ++ LNVL + E R + L P
Sbjct: 354 KLTTIIESS-----LNVL------------EPAEYRKMFDRLSVFPPSAHIP 388
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 9e-05
Identities = 50/320 (15%), Positives = 91/320 (28%), Gaps = 106/320 (33%)
Query: 361 M-----NNSSVFRLKKTWDKVSKTTKQTYD-ELRQVVDAEENFHNFKSKLQHCDPPC--- 411
M S + W++ K TY + +V +N + H
Sbjct: 1631 MGMDLYKTSKAAQ--DVWNRADNHFKDTYGFSILDIV-----INNPVNLTIHFGGEKGKR 1683
Query: 412 IP--YLGM---------YLTE--FARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITR 458
I Y M TE F ++E ++T E L++ T
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-------------- 1729
Query: 459 YQNT-PYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKI--------EYNP 509
Q T P A + A D+ P EY
Sbjct: 1730 -QFTQP---------A--LTLME-------KA-AFEDLKSKGLIPADATFAGHSLGEYAA 1769
Query: 510 KVAN-YILDTSWIIEDE-DVLHQ--KSMEIE-PRTTGRPS----CAQLPNLPLMVDAEEK 560
+ ++ IE +V+ +M++ PR S A P ++E
Sbjct: 1770 LASLADVMS----IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 561 FHNLKSKL-QHCDPPC------IPYLGM-YLT--ELATLDEVYPTFTKEGETNLVYFTKI 610
+ ++ + + Y+ +L LD V TN++ F K+
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVE--NQQYVAAGDLRALDTV---------TNVLNFIKL 1874
Query: 611 RRRKLKPLQHQQQQQQQQQQ 630
++ + LQ ++ +
Sbjct: 1875 QKIDIIELQKSLSLEEVEGH 1894
Score = 43.1 bits (101), Expect = 4e-04
Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 72/248 (29%)
Query: 22 IGCCEGESAARQATPRASFQ----QDSPQHSSKAGVVITSFRKSQRSLLLIFSTRSSTST 77
IG +A P S +DS +++ + S +L S + T
Sbjct: 306 IGV-----RCYEAYPNTSLPPSILEDSLENN-----------EGVPSPML--SISNLTQE 347
Query: 78 AATAFAIATSASSNPRD----ISPVEEVRNKRKESVLS-TATTMRVLNV-LRHWISKHTQ 131
+ T++ P IS + N K V+S ++ LN+ LR +
Sbjct: 348 QVQDYVNKTNSHL-PAGKQVEIS----LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 132 D-----FIQDKELRYMTLEFLEEIVCTP---NLLPAEYKAATQLTRMLTKEECTKHETNL 183
D F + K L++ + FL V +P +LL A+ + + L K N
Sbjct: 403 DQSRIPFSERK-LKF-SNRFLP--VASPFHSHLL---VPASDLINKDLVKNNV---SFNA 452
Query: 184 QDLLAPPQV---ANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTK- 239
+D+ P V + ++ LS I+E++ +D I ++ W E T+
Sbjct: 453 KDIQIP--VYDTFDGSDLRVLSG-SISERI--VDCIIRLPVK--------W---ETTTQF 496
Query: 240 -APHIVLF 246
A HI+ F
Sbjct: 497 KATHILDF 504
Score = 40.4 bits (94), Expect = 0.002
Identities = 82/561 (14%), Positives = 149/561 (26%), Gaps = 191/561 (34%)
Query: 258 NIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTK--APHIV--LFTQRFNT 313
++E L + S E+F +E P L +F
Sbjct: 15 SLEH--VLLVPTAS-----FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG-KF-- 64
Query: 314 MSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNF-------NGVLTIISAMNNSSV 366
V++ + S + Q V+ CL F N + + + + +
Sbjct: 65 -LGYVSSLV-EPSKVGQFDQVLNL---------CLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 367 FRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKL-QHCDPPCIP-YL-----GM-- 417
L KT + + + Y R + + S L + G
Sbjct: 114 TTLVKTKELI-----KNYITARIMAKRPFD-KKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 418 -YLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYI 476
Y E L + Y + I+ A T+ ++ R T E KV
Sbjct: 168 DYFEELRDLYQTYHVLVGD-------L--IKFSAETLSELIR---TTLDAE---KVFTQG 212
Query: 477 LD-TSWIIE-----DED-MA--------NTIRDITQYQNTPYKIEYNPK----------- 510
L+ W+ D+D + + + Y T + + P
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 511 ------VANYI-LDTSWIIEDEDVLHQKSMEI-----------EPRTTGRPSCAQLPNLP 552
A I SW E V +K++ + P T+ PS
Sbjct: 273 HSQGLVTAVAIAETDSW--ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS-------- 322
Query: 553 LMVDAEEKFHNLKSKLQHCDPPCIPYL---GMYLTEL-ATLDEVYPTFTKE--------- 599
++ D+ E +N P P L + ++ +++
Sbjct: 323 ILEDSLE--NN-------EGVPS-PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 600 GETNLV--------YFTKIRRRKLKPLQHQQQQQQQQQQQQ------------------M 633
G NLV Y + RK K Q + +++ +
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 634 EDEVSSTSTAATAFAIATSASSNPRDIS-PV------EEVRNKRK---ESVLSTATTMRV 683
+ ++ +A DI PV ++R E ++ + V
Sbjct: 433 VPASDLINKDLVKNNVSFNAK----DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 684 LNVLRHWIS------KHTQDF 698
W + H DF
Sbjct: 489 -----KWETTTQFKATHILDF 504
Score = 38.9 bits (90), Expect = 0.007
Identities = 50/308 (16%), Positives = 87/308 (28%), Gaps = 124/308 (40%)
Query: 58 FRKSQRSLLLIFSTRSSTSTAATAFAIATSASSNPRDISPVEEVRNKRKESVLSTATTMR 117
R + + S A A A S ES + +
Sbjct: 263 LRSYLKGA----TGHSQGLVTAVAIAETDSW------------------ESFFVSVR--K 298
Query: 118 VLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPN--LLPAEYKAATQL-----TRM 170
+ VL +I + PN L P+ + + + + M
Sbjct: 299 AITVL-FFIGVRCYE-------------------AYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 171 L-----TKEECTKH--ETNLQDLLAPPQVA----N-KENI------ETLSALEIAEQMTY 212
L T+E+ + +TN L A QV N +N+ ++L L +
Sbjct: 339 LSISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT----- 392
Query: 213 IDYHIFKSIRSEEFLGQAWLKSEKLTKAPH---IVLFTQRFNTV-----------ANKEN 258
+ ++ L Q ++ P + F+ RF V A+
Sbjct: 393 -----LRKAKAPSGLDQ--------SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 259 IETLSALEI---AEQMTYIDYHIF--KSIRSE-----EFLGQA-------WLKSEKLTK- 300
+ L + A+ + Y F +R E + W E T+
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW---ETTTQF 496
Query: 301 -APHIVLF 307
A HI+ F
Sbjct: 497 KATHILDF 504
Score = 32.7 bits (74), Expect = 0.57
Identities = 29/208 (13%), Positives = 54/208 (25%), Gaps = 88/208 (42%)
Query: 582 YLTELATLDEVYPTFTKE-----GET--NLV--------YFTK-------IRRRKLKP-- 617
Y EL L + Y + ET L+ FT+ + P
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 618 ---------------LQHQQ----QQQQQQQQQQMEDEVSSTSTAA----TAFAIATSAS 654
+Q + ++ + + + TA AIA + S
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 655 SNPRDISPVEEVRNKRKESVLSTATTMRVLNVLRHWISKHTQ--------------DFIQ 700
ES + + + VL +I D ++
Sbjct: 289 W----------------ESFFVSVR--KAITVL-FFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 701 DKE--------LRYMTLEFLEEIVCTPN 720
+ E + +T E +++ V N
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTN 357
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 0.003
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 173 KEECTKHETNLQDLLAP---PQVANKENIE 199
K+ K + +L+ L A P +A K +E
Sbjct: 19 KQALKKLQASLK-LYADDSAPALAIKATME 47
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA
binding, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.5.6.1 PDB: 2k6b_A
Length = 118
Score = 32.9 bits (75), Expect = 0.11
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 610 IRRRKLKPLQHQQQQQQQQQQQQMEDE 636
+RR++L LQ + QQ+ +
Sbjct: 8 LRRQRLAELQAKHGDPGDAAQQEAKHR 34
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function;
NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Length = 116
Score = 29.9 bits (67), Expect = 0.92
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 610 IRRRKLKPLQHQQQQQQQQQQQQMEDE 636
IR +L L++ + +
Sbjct: 8 IRECRLAQLKNNSGGTNGDRNSGANNG 34
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain,
heterodimer, internal cavity, activator, angiogenesis,
congenital erythrocytosis; 1.17A {Homo sapiens} PDB:
3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A
Length = 117
Score = 29.9 bits (68), Expect = 1.1
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 16/61 (26%)
Query: 562 HNLKSKLQHCDPPCIPYLGMYLTE---------------LATLDEVYPTFTKEGETNLVY 606
H++ K +CD +G Y E + + + +G+
Sbjct: 15 HSMDMKFTYCDDRITELIG-YHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQ 73
Query: 607 F 607
+
Sbjct: 74 Y 74
>3lxz_A Glutathione S-transferase family protein; structural genomics,
PP0183, PSI-2, protein structure initiative; 1.76A
{Pseudomonas putida} PDB: 3pr8_A*
Length = 229
Score = 29.6 bits (67), Expect = 2.6
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 144 LEFLEEIVCTPNLLPAE-YKAATQLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLS 202
L+++E+ LLPA+ + A R L KE E + A
Sbjct: 67 LDYIEQTQGGKALLPADPFGQA--KVRELLKEIELYIELPARTCYAESFFGMSVEPLIKE 124
Query: 203 AL--EIAEQMTYIDYH 216
++ + +
Sbjct: 125 KARADLLAGFATLKRN 140
>2gsc_A Putative uncharacterized protein XCC0516; four-helix bundle,
homopentamer, pentameric toroid, unknown function; 2.45A
{Xanthomonas campestris PV} SCOP: a.29.16.1
Length = 128
Score = 28.7 bits (64), Expect = 3.4
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 249 RFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSE 285
RF ++A E + ++IA ++ Y +S+R +
Sbjct: 71 RFLSIARGSLSELDTQVQIAARLGYSRSEDDQSVRRQ 107
>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A
{Bombyx mori}
Length = 246
Score = 29.0 bits (65), Expect = 5.1
Identities = 15/125 (12%), Positives = 40/125 (32%), Gaps = 24/125 (19%)
Query: 144 LEFLEEIVCTPNLLPAE-YKAATQLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLS 202
++L+E L + Y A R+L + + +L+ +++ I+TL
Sbjct: 96 CDYLDEKYTRHTLHSHDPYVKAQD--RLLIERFNELIKGSLECFDTNFAFGSEQIIQTLE 153
Query: 203 ALEIA-----------EQMTYIDYHI------FKSIRSEEFLGQAWLKSEKLTKAPHIVL 245
E + +DY + + + +++ + P+
Sbjct: 154 IFEKELTNRGTNYFGGNRPGMLDYMVWPWVERLYLL--RCVNDRKFVEKKS--LFPNFAD 209
Query: 246 FTQRF 250
+ +
Sbjct: 210 WGDQM 214
>3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal
domain-like fold, structura genomics, joint center for
structural genomics; 2.05A {Ralstonia eutropha}
Length = 214
Score = 28.8 bits (65), Expect = 5.4
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 8/95 (8%)
Query: 144 LEFLEEIVCTPNLLPAEYKAATQLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLSA 203
E+LE LLP + A + R + E ++L K S
Sbjct: 65 NEYLEAAYPQTPLLPRDPMQAGK-VREIVTFLELYLELTARELYPEAFFGGKV-----SD 118
Query: 204 LEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLT 238
Q+ + + + ++ ++ + T
Sbjct: 119 NVKERQLKLLSRY-VPAF-AKLAKFSPYVAGDTFT 151
>2nw8_A Tryptophan 2,3-dioxygenase; all alpha-helical protein, structural
genomics, PSI-2, prote structure initiative; HET: TRP
HEM; 1.60A {Xanthomonas campestris PV} SCOP: a.266.1.1
PDB: 2nw7_A* 2nw9_A* 3bk9_A* 3e08_A* 1yw0_A
Length = 306
Score = 28.8 bits (63), Expect = 5.7
Identities = 32/235 (13%), Positives = 66/235 (28%), Gaps = 31/235 (13%)
Query: 255 NKENIETLSALEIAEQMTYIDYHIFKSIRSEEFLGQAWLKSEKLTKAPHI-VLFTQRFNT 313
N ++E ++ ++TY Y +R ++ L SE + ++ Q
Sbjct: 6 NLRDLEPGIHTDLEGRLTYGGY-----LRLDQLLSAQQPLSEPAHHDEMLFIIQHQTSEL 60
Query: 314 MSKLVANEILNRSNLSQRVHVIEKWIAVADILKCLNNFNGVLTIISAMNNSSVFRLKKTW 373
KL+A+E+ + ++ +C ++ + W
Sbjct: 61 WLKLLAHEL----------RAAIVHLQRDEVWQCRKVLARSKQVLRQLTEQ--------W 102
Query: 374 DKVSKTTKQTYDELRQVVDAEENFHNFKSK-------LQHCDPPCIPYLGMYLTEFARLD 426
+ T Y R V+ F + + + ++ + R
Sbjct: 103 SVLETLTPSEYMGFRDVLGPSSGFQSLQYRYIEFLLGNKNPQMLQVFAYDPAGQARLREV 162
Query: 427 EEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSW 481
E P+ +E L F RD T + + D W
Sbjct: 163 LEAPSLYEEFLRYLARFGHAIPQQYQARDWTAAHVADDTLRPVFERIYENTDRYW 217
>3rty_A Period circadian protein; PAS domain, signalling, timeless,
circadian clock protein; 2.85A {Drosophila melanogaster}
PDB: 1wa9_A 3gec_A
Length = 339
Score = 28.9 bits (64), Expect = 5.8
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 543 PSCAQLPNLPLMVDAEEKF---HNLKSKLQHCDPPCIPYLGMYLTEL 586
S ++P+ L + + F H + H D + LG +L
Sbjct: 139 KSSYKVPDEILSQKSPK-FAIRHTATGIISHVDSAAVSALGYLPQDL 184
Score = 28.9 bits (64), Expect = 6.9
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 398 HNFKSKLQHCDPPCIPYLGMYLTEFAR--------------LDEEYPTFTKEGETNLVNF 443
H + H D + LG + + E Y T K+G+T +F
Sbjct: 160 HTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASF 219
Query: 444 -TKIRRMANTIRDITRYQNTPYKIEYNPK--VANYILDTSWIIEDEDMANTIRDITQYQN 500
+K R + T + NP +++ + + N +
Sbjct: 220 CSKPYRFLIQNGCYVLLE-TEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKL 278
Query: 501 TPYKIEYNP 509
+ +
Sbjct: 279 KISEEAQSR 287
>1ohg_A Major capsid protein; virus, virus coat protein, virus/viral
protein, auto- catalytic cross-LINK, icosahedral virus;
3.45A {Bacteriophage HK97} SCOP: d.183.1.1 PDB: 2frp_A
2fsy_A 2ft1_A 2fte_A 3ddx_A 2gp1_A 2fs3_A 3e8k_A 1if0_A
Length = 282
Score = 28.9 bits (64), Expect = 6.5
Identities = 6/83 (7%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 443 FTKIRRMANTIRDITRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTP 502
R + + + + +EY + + + + E + ++
Sbjct: 22 IMPGLRRLTIRDLLAQGRTSSNALEY-VREEVFTNNADVVAEKALKPESDITFSKQTANV 80
Query: 503 YKIEYNPKVANYILDTSWIIEDE 525
I + + + ++D + +++
Sbjct: 81 KTIAHWVQASRQVMDDAPMLQSY 103
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological
rhythms, cytoplasm, nucleus, phosphoprotein,
transcription; 2.40A {Mus musculus}
Length = 309
Score = 28.8 bits (64), Expect = 6.8
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 562 HNLKSKLQHCDPPCIPYLGMYLTEL 586
H Q D +P LG +L
Sbjct: 171 HTPNCLFQAVDERAVPLLGYLPQDL 195
>2rld_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.70A {Bacteroides thetaiotaomicron
vpi-5482} SCOP: a.29.16.1
Length = 121
Score = 27.5 bits (61), Expect = 7.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 249 RFNTVANKENIETLSALEIAEQMTYIDYHIFKSIRSE 285
+A KE ET LE+ + YI ++SI ++
Sbjct: 67 NKLNIALKEANETEYWLELLIRTEYITREQYESINND 103
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein
transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Length = 554
Score = 28.6 bits (63), Expect = 8.0
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 617 PLQHQQQQQQQQQQQQMEDEVSSTSTAATAFAIATSASSNP 657
+ +Q+++Q Q+ +E ++ + A + + P
Sbjct: 11 LNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKP 51
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain,
heterodimer, internal cavity, activator, angiogenesis,
congenital erythrocytosis; 1.17A {Homo sapiens} PDB:
3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A*
2k7s_A 2a24_B
Length = 121
Score = 27.2 bits (61), Expect = 9.5
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 562 HNLKSKLQHCDPPCIPYLGMYLTE 585
HN++ D C+ +G Y +
Sbjct: 18 HNIEGIFTFVDHRCVATVG-YQPQ 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.129 0.370
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,547,337
Number of extensions: 619153
Number of successful extensions: 1611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1549
Number of HSP's successfully gapped: 72
Length of query: 723
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 622
Effective length of database: 3,881,772
Effective search space: 2414462184
Effective search space used: 2414462184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.6 bits)