RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10812
         (723 letters)



>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 481

 Score =  226 bits (577), Expect = 7e-67
 Identities = 96/441 (21%), Positives = 180/441 (40%), Gaps = 90/441 (20%)

Query: 104 KRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKA 163
           KR          +RVLNV RHW+  H  DF +D  L     EF+  +        A  K 
Sbjct: 110 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRG-----KAMKKW 164

Query: 164 ATQLTRMLTKEECTKHETNLQDLLAPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRS 223
              +T+++ +++  +      ++                                     
Sbjct: 165 VESITKIIQRKKIARDNGPGHNI------------------------------------- 187

Query: 224 EEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHIFKSIR 283
                           +P  V +           ++ TL  +EIA Q+T ++  ++++++
Sbjct: 188 ------------TFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQ 235

Query: 284 SEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEKWIAVAD 343
             E +G  W K +K   +P+++   +    ++      I+   NL +RV V+ + I +  
Sbjct: 236 PSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQ 295

Query: 344 ILKCLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSK 403
           + + LNNFNGVL ++SAMN+S V+RL  T++++    K+  +E  ++ +  +++  + +K
Sbjct: 296 VFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSE--DHYKKYLAK 353

Query: 404 LQHCDPPCIPYLGMYLTEFARLDEEYPTFTKEGETNLVNFTKIRRMANTIRDITRYQNTP 463
           L+  +PPC+P+ G+YLT   + +E  P   K     L+NF+K R++A    +I +YQN P
Sbjct: 354 LRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQP 413

Query: 464 YKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNPKVANYILDTSWIIE 523
           Y +     +  +  + + +    +                                   E
Sbjct: 414 YCLRVESDIKRFFENLNPMGNSME----------------------------------KE 439

Query: 524 DEDVLHQKSMEIEPRTTGRPS 544
             D L  KS+EIEPR      
Sbjct: 440 FTDYLFNKSLEIEPRNPKPLP 460



 Score = 54.8 bits (131), Expect = 2e-08
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 553 LMVDAEEKFHNLKSKLQHCDPPCIPYLGMYLTELATLDEVYPTFTKEGETNLVYFTKIRR 612
               +E+ +    +KL+  +PPC+P+ G+YLT +   +E  P   K     L+ F+K R+
Sbjct: 339 AHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRK 398

Query: 613 --RKLKPLQHQQQQ 624
                  +Q  Q Q
Sbjct: 399 VAEITGEIQQYQNQ 412



 Score = 28.6 bits (63), Expect = 3.1
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 669 KRKESVLSTATTMRVLNVLRHWISKHTQDFIQDKELRYMTLEFLEEIVC 717
           KR          +RVLNV RHW+  H  DF +D  L     EF+  +  
Sbjct: 110 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRG 158


>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 105

 Score = 32.7 bits (75), Expect = 0.036
 Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 4/34 (11%)

Query: 610 IRRRKLKPLQHQQ----QQQQQQQQQQMEDEVSS 639
           +RR++L  LQ +        QQ+ + +  +  +S
Sbjct: 1   LRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNS 34


>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus
           communis) [TaxId: 3988]}
          Length = 125

 Score = 27.2 bits (60), Expect = 3.8
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 615 LKPLQHQQQQQQQQQQQQMED 635
           +K +   Q QQ Q   ++ E 
Sbjct: 82  IKYIAEDQIQQGQLHGEESER 102


>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 201

 Score = 27.6 bits (61), Expect = 4.2
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 219 KSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTVANKENIETLSALEIAEQMTYIDYHI 278
           K +R+ E + +A+   EK T    I +        A +E+  ++          ++   I
Sbjct: 82  KKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSV---MFGGIRYHVAVDI 138

Query: 279 FKSIRSEEFLGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNLSQRVHVIEK 337
               R    +    +      K            + ++ +A EI+  +N   + +   K
Sbjct: 139 SPLRR--LDVALRNIALGASAKCYR------TKMSFAEALAEEIILAANKDPKSYAYSK 189


>d2ft1a1 d.183.1.1 (A:104-383) Major capsid protein gp5
           {Bacteriophage HK97 [TaxId: 37554]}
          Length = 280

 Score = 27.5 bits (60), Expect = 6.3
 Identities = 9/76 (11%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 451 NTIRDI-TRYQNTPYKIEYNPKVANYILDTSWIIEDEDMANTIRDITQYQNTPYKIEYNP 509
            TIRD+  + + +   +EY  +   +  +   + E      +    ++       I +  
Sbjct: 29  LTIRDLLAQGRTSSNALEY-VREEVFTNNADVVAEKALKPESDITFSKQTANVKTIAHWV 87

Query: 510 KVANYILDTSWIIEDE 525
           + +  ++D + +++  
Sbjct: 88  QASRQVMDDAPMLQSY 103


>g1pnb.1 a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus) [TaxId:
           3708]}
          Length = 106

 Score = 25.9 bits (57), Expect = 7.9
 Identities = 3/16 (18%), Positives = 4/16 (25%)

Query: 620 HQQQQQQQQQQQQMED 635
              + Q Q    Q   
Sbjct: 66  KSVRVQGQHGPFQSTR 81


>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 111

 Score = 25.6 bits (56), Expect = 9.1
 Identities = 7/46 (15%), Positives = 18/46 (39%)

Query: 364 SSVFRLKKTWDKVSKTTKQTYDELRQVVDAEENFHNFKSKLQHCDP 409
           S +    K W K+S   ++ +  ++  ++   N    +   +   P
Sbjct: 63  SDLLSRPKPWHKLSLKGREPFVRMQLWLNDPHNVEKLRDMKKLSGP 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,557,845
Number of extensions: 117334
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 18
Length of query: 723
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 631
Effective length of database: 1,144,436
Effective search space: 722139116
Effective search space used: 722139116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)