BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10817
         (199 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
           GN=pol PE=1 SV=1
          Length = 1146

 Score = 32.0 bits (71), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 34  ISFMWCPSHCGISGNEAVDVAAK 56
           + F W P H GI GN+  D AAK
Sbjct: 714 VYFAWVPGHKGICGNQLADEAAK 736


>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
           GN=pol PE=1 SV=1
          Length = 1146

 Score = 32.0 bits (71), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 34  ISFMWCPSHCGISGNEAVDVAAK 56
           + F W P H GI GN+  D AAK
Sbjct: 714 VYFAWVPGHKGICGNQLADEAAK 736


>sp|Q03277|PO11_SCICO Retrovirus-related Pol polyprotein from type-1 retrotransposable
           element R1 (Fragment) OS=Sciara coprophila PE=4 SV=1
          Length = 1004

 Score = 30.4 bits (67), Expect = 8.7,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 69  SASDYKPLIKKIVQRNWQSSWNSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIG 128
           S S +K L+ + +   WQ  W+    G       P++       R  R  E +   + +G
Sbjct: 854 SGSQFKELLMERLLDVWQGRWDVSEKGRLTHEFIPSV-------RFVRENEWMAFGLCLG 906

Query: 129 HTRLTH----SYLFSR--SPQPTCRCGDI-LTVKHIL-TCPLDIQLR 167
           +    H     +L  R  S  P C CG     VKH+L  CPL   LR
Sbjct: 907 YVLTGHGSMNGFLHKRGLSNTPVCMCGAPNEDVKHLLGECPLYEDLR 953


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,149,179
Number of Sequences: 539616
Number of extensions: 2982964
Number of successful extensions: 6773
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6770
Number of HSP's gapped (non-prelim): 9
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)