Query psy10817
Match_columns 199
No_of_seqs 129 out of 1364
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 19:15:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08719 ribonuclease H; Revie 99.0 3.1E-10 6.7E-15 85.6 3.8 41 18-59 105-145 (147)
2 PRK06548 ribonuclease H; Provi 98.9 5E-10 1.1E-14 85.5 3.3 47 11-58 92-139 (161)
3 PF00075 RNase_H: RNase H; In 98.9 1.3E-10 2.8E-15 85.3 -0.6 40 15-58 90-130 (132)
4 PRK00203 rnhA ribonuclease H; 98.8 3.1E-09 6.7E-14 80.4 2.7 46 12-58 93-139 (150)
5 COG0328 RnhA Ribonuclease HI [ 98.6 3.9E-08 8.3E-13 74.2 3.1 40 19-58 103-142 (154)
6 cd06222 RnaseH RNase H (RNase 98.5 2E-07 4.4E-12 66.3 5.1 56 3-58 73-129 (130)
7 KOG3752|consensus 97.9 8.7E-06 1.9E-10 68.9 4.0 41 17-59 323-363 (371)
8 PF13966 zf-RVT: zinc-binding 96.4 0.0018 3.8E-08 44.1 1.9 27 138-164 54-83 (86)
9 PRK13907 rnhA ribonuclease H; 95.9 0.0073 1.6E-07 44.0 2.9 37 18-58 88-124 (128)
10 PF13456 RVT_3: Reverse transc 95.0 0.013 2.8E-07 39.0 1.5 52 3-58 33-84 (87)
11 PRK07238 bifunctional RNase H/ 92.1 0.19 4E-06 43.4 3.9 38 17-58 92-129 (372)
12 PRK07708 hypothetical protein; 89.6 0.27 5.9E-06 39.5 2.4 26 31-60 182-207 (219)
13 COG0296 GlgB 1,4-alpha-glucan 75.7 4.1 8.9E-05 37.8 4.3 35 18-52 214-248 (628)
14 PF05741 zf-nanos: Nanos RNA b 67.6 2.4 5.2E-05 26.3 0.6 19 144-162 34-54 (55)
15 PF09345 DUF1987: Domain of un 66.1 11 0.00025 26.3 3.9 30 12-41 57-86 (99)
16 PF15322 PMSI1: Protein missin 65.4 3.4 7.4E-05 34.2 1.3 15 119-133 213-227 (311)
17 PF13917 zf-CCHC_3: Zinc knuck 54.0 8.8 0.00019 22.4 1.3 18 142-162 3-22 (42)
18 COG0333 RpmF Ribosomal protein 52.1 7.3 0.00016 24.4 0.8 22 143-164 27-50 (57)
19 cd00350 rubredoxin_like Rubred 39.8 13 0.00028 20.2 0.5 9 142-150 16-25 (33)
20 PF14169 YdjO: Cold-inducible 38.9 21 0.00045 22.5 1.4 20 138-157 34-56 (59)
21 PF15216 TSLP: Thymic stromal 35.2 12 0.00026 26.9 -0.1 12 37-48 80-91 (124)
22 PRK12568 glycogen branching en 33.7 62 0.0014 30.8 4.3 32 17-48 318-349 (730)
23 COG5257 GCD11 Translation init 32.9 25 0.00054 30.3 1.4 30 140-169 69-102 (415)
24 PF08274 PhnA_Zn_Ribbon: PhnA 32.6 13 0.00029 20.0 -0.2 19 144-162 3-24 (30)
25 KOG0466|consensus 31.2 32 0.00069 29.4 1.7 31 138-168 104-140 (466)
26 PF07282 OrfB_Zn_ribbon: Putat 30.9 26 0.00057 22.2 1.0 21 142-162 27-51 (69)
27 PF13824 zf-Mss51: Zinc-finger 30.6 26 0.00057 21.7 0.9 9 154-162 10-19 (55)
28 cd00729 rubredoxin_SM Rubredox 30.2 25 0.00055 19.3 0.7 9 142-150 17-26 (34)
29 PF09862 DUF2089: Protein of u 30.1 27 0.00059 25.0 1.0 46 146-196 1-52 (113)
30 TIGR01506 ribC_arch riboflavin 29.0 62 0.0013 24.5 2.8 34 23-58 18-53 (151)
31 KOG4602|consensus 28.5 29 0.00064 28.5 1.1 22 142-163 267-290 (318)
32 PF00885 DMRL_synthase: 6,7-di 27.9 73 0.0016 23.7 3.1 34 23-58 25-61 (144)
33 KOG1994|consensus 27.5 27 0.00058 28.2 0.7 19 145-163 241-262 (268)
34 PRK12419 riboflavin synthase s 27.2 64 0.0014 24.6 2.7 31 26-58 35-68 (158)
35 PRK00061 ribH 6,7-dimethyl-8-r 27.2 66 0.0014 24.3 2.7 33 24-58 35-70 (154)
36 COG4566 TtrR Response regulato 26.8 1.9E+02 0.0041 22.9 5.2 53 24-80 67-119 (202)
37 PRK12380 hydrogenase nickel in 26.3 29 0.00063 24.7 0.6 24 141-164 68-93 (113)
38 PLN03244 alpha-amylase; Provis 26.2 1.1E+02 0.0023 29.7 4.4 31 17-47 440-470 (872)
39 smart00642 Aamy Alpha-amylase 26.1 1.3E+02 0.0027 22.8 4.2 29 17-45 69-97 (166)
40 PF04863 EGF_alliinase: Alliin 26.1 15 0.00032 22.8 -0.8 23 125-150 18-42 (56)
41 TIGR00100 hypA hydrogenase nic 25.8 31 0.00066 24.7 0.7 25 140-164 67-93 (115)
42 PF03119 DNA_ligase_ZBD: NAD-d 25.7 17 0.00038 19.1 -0.5 17 145-161 1-21 (28)
43 COG2888 Predicted Zn-ribbon RN 25.4 41 0.0009 21.2 1.1 21 143-163 9-33 (61)
44 PRK14706 glycogen branching en 25.2 1E+02 0.0022 28.9 4.1 31 17-47 216-246 (639)
45 PF11658 DUF3260: Protein of u 25.0 1.4E+02 0.0031 27.1 4.8 35 14-48 379-414 (518)
46 PRK14705 glycogen branching en 24.8 1.1E+02 0.0024 31.1 4.4 31 17-47 814-844 (1224)
47 PLN02404 6,7-dimethyl-8-ribity 24.7 80 0.0017 23.5 2.7 31 26-58 32-65 (141)
48 COG1998 RPS31 Ribosomal protei 24.3 36 0.00077 20.6 0.6 20 142-161 18-41 (51)
49 TIGR02402 trehalose_TreZ malto 24.3 1.2E+02 0.0027 27.6 4.5 33 17-49 159-191 (542)
50 PRK00420 hypothetical protein; 24.2 44 0.00096 23.9 1.2 11 140-150 37-48 (112)
51 COG2093 DNA-directed RNA polym 23.6 46 0.00099 21.2 1.1 12 140-151 15-27 (64)
52 TIGR03368 cellulose_yhjU cellu 22.9 1.6E+02 0.0036 26.7 4.7 35 14-48 376-411 (518)
53 PRK03681 hypA hydrogenase nick 22.6 40 0.00088 24.0 0.8 24 141-164 68-94 (114)
54 PRK12313 glycogen branching en 22.5 1.4E+02 0.003 27.8 4.5 32 17-48 219-250 (633)
55 TIGR00686 phnA alkylphosphonat 22.4 46 0.001 23.6 1.0 22 143-164 2-26 (109)
56 KOG3243|consensus 22.2 1.1E+02 0.0023 22.7 2.9 17 30-46 49-65 (158)
57 TIGR01515 branching_enzym alph 22.2 1.5E+02 0.0032 27.6 4.5 34 17-50 205-238 (613)
58 PRK06455 riboflavin synthase; 22.1 97 0.0021 23.5 2.8 34 23-58 20-55 (155)
59 PF13696 zf-CCHC_2: Zinc knuck 21.5 44 0.00095 18.3 0.6 16 144-162 9-26 (32)
60 PF06170 DUF983: Protein of un 20.8 46 0.001 22.5 0.8 10 142-151 7-17 (86)
61 PF14205 Cys_rich_KTR: Cystein 20.8 54 0.0012 20.3 1.0 19 145-163 6-34 (55)
62 PRK12286 rpmF 50S ribosomal pr 20.7 78 0.0017 19.7 1.7 25 140-164 24-50 (57)
63 PRK05402 glycogen branching en 20.6 1.6E+02 0.0035 28.0 4.5 32 17-48 314-345 (726)
No 1
>PRK08719 ribonuclease H; Reviewed
Probab=99.00 E-value=3.1e-10 Score=85.58 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCeeEEEEecCCCCCccchhhhhhhCCCC
Q psy10817 18 SKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 59 (199)
Q Consensus 18 ~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gNE~AD~~Ak~a~ 59 (199)
.+++..+..|.. ...|+|.|||||+|++|||.||++|++|+
T Consensus 105 ~dl~~~i~~l~~-~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~ 145 (147)
T PRK08719 105 RDLWQQVDELRA-RKYVEVEKVTAHSGIEGNEAADMLAQAAA 145 (147)
T ss_pred HHHHHHHHHHhC-CCcEEEEEecCCCCChhHHHHHHHHHHHh
Confidence 577777777766 56799999999999999999999999874
No 2
>PRK06548 ribonuclease H; Provisional
Probab=98.95 E-value=5e-10 Score=85.48 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=41.4
Q ss_pred CCCHHHH-HHHHHHHHHHHHcCCeeEEEEecCCCCCccchhhhhhhCCC
Q psy10817 11 SCNNALL-SKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 11 ~~~~~~i-~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
++|+++. ++++..+.++... ..|+|.|||||+|.+|||.||+||++|
T Consensus 92 s~G~pV~N~dL~~~l~~l~~~-~~v~~~wVkgHsg~~gNe~aD~LA~~a 139 (161)
T PRK06548 92 ADGKPVLNQEIIQEIDSLMEN-RNIRMSWVNAHTGHPLNEAADSLARQA 139 (161)
T ss_pred cCCCccccHHHHHHHHHHHhc-CceEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4777877 7888888888765 489999999999999999999999998
No 3
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=98.93 E-value=1.3e-10 Score=85.33 Aligned_cols=40 Identities=33% Similarity=0.685 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHcCCeeEEEEecCCCCC-ccchhhhhhhCCC
Q psy10817 15 ALLSKIYSTWLDLVACGKEISFMWCPSHCGI-SGNEAVDVAAKNP 58 (199)
Q Consensus 15 ~~i~~i~~~~~~l~~~~~~i~l~WvPgH~gi-~gNE~AD~~Ak~a 58 (199)
++..+|++.+ ..+..|.|.|||||+|+ .|||.||++||+|
T Consensus 90 ~i~~~i~~~~----~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a 130 (132)
T PF00075_consen 90 PIKNEIWELL----SRGIKVRFRWVPGHSGVPQGNERADRLAKEA 130 (132)
T ss_dssp BHTHHHHHHH----HHSSEEEEEESSSSSSSHHHHHHHHHHHHHH
T ss_pred cchhheeecc----ccceEEeeeeccCcCCCchhHHHHHHHHHHh
Confidence 4666666665 45899999999999999 6999999999975
No 4
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=98.79 E-value=3.1e-09 Score=80.38 Aligned_cols=46 Identities=17% Similarity=0.319 Sum_probs=35.3
Q ss_pred CCHHHH-HHHHHHHHHHHHcCCeeEEEEecCCCCCccchhhhhhhCCC
Q psy10817 12 CNNALL-SKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 12 ~~~~~i-~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
.|+++. .+++..+.++.. ...|.|.|||||+|++|||.||++||+|
T Consensus 93 ~g~~v~n~dl~~~i~~l~~-~~~v~~~wV~~H~~~~~N~~AD~lA~~a 139 (150)
T PRK00203 93 DKKPVKNVDLWQRLDAALK-RHQIKWHWVKGHAGHPENERCDELARAG 139 (150)
T ss_pred CCCccccHHHHHHHHHHhc-cCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 344442 245555556544 4789999999999999999999999998
No 5
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=98.57 E-value=3.9e-08 Score=74.23 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCeeEEEEecCCCCCccchhhhhhhCCC
Q psy10817 19 KIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 19 ~i~~~~~~l~~~~~~i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
++|..+.++...-..|.+.|||||.|-++||.||++|+.+
T Consensus 103 dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~ 142 (154)
T COG0328 103 DLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREA 142 (154)
T ss_pred HHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHH
Confidence 5566777777766699999999999999999999999998
No 6
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=98.50 E-value=2e-07 Score=66.31 Aligned_cols=56 Identities=29% Similarity=0.467 Sum_probs=40.6
Q ss_pred hhHHhhcCC-CCHHHHHHHHHHHHHHHHcCCeeEEEEecCCCCCccchhhhhhhCCC
Q psy10817 3 SLQAITSKS-CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 3 al~al~~~~-~~~~~i~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
++..+.++. .........+..+.++...+..+.|.|||+|+|+.+|+.||.+||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~ 129 (130)
T cd06222 73 VINALTGWYEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEA 129 (130)
T ss_pred HHHHhhccccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhh
Confidence 345555542 12333445555555555678899999999999999999999999976
No 7
>KOG3752|consensus
Probab=97.94 E-value=8.7e-06 Score=68.95 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCCeeEEEEecCCCCCccchhhhhhhCCCC
Q psy10817 17 LSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 59 (199)
Q Consensus 17 i~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gNE~AD~~Ak~a~ 59 (199)
+.++-++..++ .+..|++.|||||.||.|||+||.+|++++
T Consensus 323 ~~e~~~l~q~~--~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs 363 (371)
T KOG3752|consen 323 FNELDELEQEI--SNKKVQQEYVGGHSGILGNEMADALARKGS 363 (371)
T ss_pred HHHHHHHHhhh--ccCceEEEEecCcCCcchHHHHHHHHhhhh
Confidence 44444444443 478999999999999999999999999984
No 8
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=96.45 E-value=0.0018 Score=44.13 Aligned_cols=27 Identities=30% Similarity=0.768 Sum_probs=22.9
Q ss_pred cCCCCCCCcc-cCC-CCccccc-ccCcccH
Q psy10817 138 FSRSPQPTCR-CGD-ILTVKHI-LTCPLDI 164 (199)
Q Consensus 138 ~~~~~~~~C~-Cg~-~~t~~Hi-~~Cp~~~ 164 (199)
.+...++.|. |+. .||++|+ ++||...
T Consensus 54 r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~ 83 (86)
T PF13966_consen 54 RGIQVDPICPLCGNEEETIEHLFFHCPFAR 83 (86)
T ss_pred cCCccCCccccCCCccccccceeccCcCcc
Confidence 3456789999 997 9999999 9999854
No 9
>PRK13907 rnhA ribonuclease H; Provisional
Probab=95.88 E-value=0.0073 Score=43.98 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCCeeEEEEecCCCCCccchhhhhhhCCC
Q psy10817 18 SKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 18 ~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
+.+++.+..|...-..+.|.|||.+ .|+.||.+|+.|
T Consensus 88 ~~l~~~~~~l~~~f~~~~~~~v~r~----~N~~Ad~LA~~a 124 (128)
T PRK13907 88 APLLEEALQYIKSFDLFFIKWIPSS----QNKVADELARKA 124 (128)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCch----hchhHHHHHHHH
Confidence 4445555556555667788999995 899999999987
No 10
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=94.99 E-value=0.013 Score=39.02 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=34.0
Q ss_pred hhHHhhcCCCCHHHHHHHHHHHHHHHHcCCeeEEEEecCCCCCccchhhhhhhCCC
Q psy10817 3 SLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 3 al~al~~~~~~~~~i~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
.+.+|+........+..+...+..+.+.-..+.+.|||-- +|..||.+||.|
T Consensus 33 vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~r~----~N~~A~~LA~~a 84 (87)
T PF13456_consen 33 VVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIPRE----QNKVADALAKFA 84 (87)
T ss_dssp HHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE--GG----GSHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhhhhhccccceEEEEEChH----HhHHHHHHHHHH
Confidence 4566666632211445555566666667789999999986 799999999865
No 11
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=92.08 E-value=0.19 Score=43.40 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCeeEEEEecCCCCCccchhhhhhhCCC
Q psy10817 17 LSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 17 i~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
+......+.+|..+-..+.+.|||. .+|+.||.+|+.|
T Consensus 92 l~~~~~~i~~l~~~f~~~~i~~v~r----~~N~~AD~LA~~a 129 (372)
T PRK07238 92 MKPLAAQARELASQFGRVTYTWIPR----ARNAHADRLANEA 129 (372)
T ss_pred HHHHHHHHHHHHhcCCceEEEECCc----hhhhHHHHHHHHH
Confidence 3444455566666667899999998 5899999999998
No 12
>PRK07708 hypothetical protein; Validated
Probab=89.59 E-value=0.27 Score=39.48 Aligned_cols=26 Identities=12% Similarity=-0.024 Sum_probs=21.2
Q ss_pred CCeeEEEEecCCCCCccchhhhhhhCCCCC
Q psy10817 31 GKEISFMWCPSHCGISGNEAVDVAAKNPSP 60 (199)
Q Consensus 31 ~~~i~l~WvPgH~gi~gNE~AD~~Ak~a~~ 60 (199)
...+.+.|||-. -|+.||++|+.|..
T Consensus 182 ~l~~~~~~VpR~----~N~~AD~LAk~Al~ 207 (219)
T PRK07708 182 KLTPVYEPISRK----QNKEADQLATQALE 207 (219)
T ss_pred CceEEEEECCch----hhhHHHHHHHHHHh
Confidence 446788999875 59999999999943
No 13
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=75.68 E-value=4.1 Score=37.78 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCeeEEEEecCCCCCccchhhh
Q psy10817 18 SKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 52 (199)
Q Consensus 18 ~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gNE~AD 52 (199)
.+.+..+..+.+.|..|-|-|||+|-+..||-++-
T Consensus 214 edfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~ 248 (628)
T COG0296 214 EDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLAR 248 (628)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhhh
Confidence 45566777888899999999999999999987763
No 14
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=67.59 E-value=2.4 Score=26.34 Aligned_cols=19 Identities=32% Similarity=0.634 Sum_probs=8.2
Q ss_pred CCcc-cCCCCccccc-ccCcc
Q psy10817 144 PTCR-CGDILTVKHI-LTCPL 162 (199)
Q Consensus 144 ~~C~-Cg~~~t~~Hi-~~Cp~ 162 (199)
-.|+ ||+..+-.|. -.||.
T Consensus 34 y~Cp~CgAtGd~AHT~~yCP~ 54 (55)
T PF05741_consen 34 YVCPICGATGDNAHTIKYCPK 54 (55)
T ss_dssp ---TTT---GGG---GGG-TT
T ss_pred CcCCCCcCcCccccccccCcC
Confidence 4799 9999999999 99996
No 15
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=66.07 E-value=11 Score=26.26 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeeEEEEecC
Q psy10817 12 CNNALLSKIYSTWLDLVACGKEISFMWCPS 41 (199)
Q Consensus 12 ~~~~~i~~i~~~~~~l~~~~~~i~l~WvPg 41 (199)
|....+..|.+.+.++.+.|..|++.|.--
T Consensus 57 SSsk~l~~i~~~Le~~~~~g~~V~v~Wyyd 86 (99)
T PF09345_consen 57 SSSKALMDIFDLLEDAAQKGGKVTVNWYYD 86 (99)
T ss_pred HhHHHHHHHHHHHHHHHhcCCcEEEEEEEC
Confidence 566778999999999999999999999754
No 16
>PF15322 PMSI1: Protein missing in infertile sperm 1, putative
Probab=65.36 E-value=3.4 Score=34.19 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.2
Q ss_pred hhhhhhccccccccc
Q psy10817 119 EVVLTRMRIGHTRLT 133 (199)
Q Consensus 119 ~~~L~qlrTGH~~l~ 133 (199)
.-.|.||||.|-+++
T Consensus 213 vGALsqLrTehrPCt 227 (311)
T PF15322_consen 213 VGALSQLRTEHRPCT 227 (311)
T ss_pred cchhhhhhhccCCcc
Confidence 356789999999887
No 17
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=54.04 E-value=8.8 Score=22.43 Aligned_cols=18 Identities=33% Similarity=0.903 Sum_probs=14.0
Q ss_pred CCCCcc-cCCCCccccc-ccCcc
Q psy10817 142 PQPTCR-CGDILTVKHI-LTCPL 162 (199)
Q Consensus 142 ~~~~C~-Cg~~~t~~Hi-~~Cp~ 162 (199)
.+..|. |+.. .|+ ++||.
T Consensus 3 ~~~~CqkC~~~---GH~tyeC~~ 22 (42)
T PF13917_consen 3 ARVRCQKCGQK---GHWTYECPN 22 (42)
T ss_pred CCCcCcccCCC---CcchhhCCC
Confidence 356788 9864 599 99995
No 18
>COG0333 RpmF Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=52.11 E-value=7.3 Score=24.39 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=19.5
Q ss_pred CCCcc-cCCCCccccc-ccCcccH
Q psy10817 143 QPTCR-CGDILTVKHI-LTCPLDI 164 (199)
Q Consensus 143 ~~~C~-Cg~~~t~~Hi-~~Cp~~~ 164 (199)
-..|+ ||+..-+-|+ ..|..|.
T Consensus 27 ~~~c~~cG~~~l~Hrvc~~cg~Y~ 50 (57)
T COG0333 27 LSVCPNCGEYKLPHRVCLKCGYYK 50 (57)
T ss_pred ceeccCCCCcccCceEcCCCCCcc
Confidence 47899 9999999999 9999885
No 19
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.80 E-value=13 Score=20.24 Aligned_cols=9 Identities=33% Similarity=0.870 Sum_probs=4.3
Q ss_pred CCCCcc-cCC
Q psy10817 142 PQPTCR-CGD 150 (199)
Q Consensus 142 ~~~~C~-Cg~ 150 (199)
++..|+ ||.
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 344455 554
No 20
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=38.92 E-value=21 Score=22.50 Aligned_cols=20 Identities=25% Similarity=0.677 Sum_probs=13.5
Q ss_pred cCCCCCCCcc-cCC--CCccccc
Q psy10817 138 FSRSPQPTCR-CGD--ILTVKHI 157 (199)
Q Consensus 138 ~~~~~~~~C~-Cg~--~~t~~Hi 157 (199)
|...+.|.|+ |+. ....+++
T Consensus 34 Fs~~~~p~CPlC~s~M~~~~r~L 56 (59)
T PF14169_consen 34 FSFEEEPVCPLCKSPMVSGTRML 56 (59)
T ss_pred cccCCCccCCCcCCccccceeec
Confidence 4457789999 997 4444443
No 21
>PF15216 TSLP: Thymic stromal lymphopoietin
Probab=35.19 E-value=12 Score=26.93 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=10.8
Q ss_pred EEecCCCCCccc
Q psy10817 37 MWCPSHCGISGN 48 (199)
Q Consensus 37 ~WvPgH~gi~gN 48 (199)
.||||++++.-|
T Consensus 80 ~~CPGyse~QiN 91 (124)
T PF15216_consen 80 NYCPGYSETQIN 91 (124)
T ss_pred HhCCCcchhhcc
Confidence 589999999887
No 22
>PRK12568 glycogen branching enzyme; Provisional
Probab=33.73 E-value=62 Score=30.83 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCeeEEEEecCCCCCccc
Q psy10817 17 LSKIYSTWLDLVACGKEISFMWCPSHCGISGN 48 (199)
Q Consensus 17 i~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gN 48 (199)
..+.+..+.++.++|..|-+-|||.|++-.++
T Consensus 318 ~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~ 349 (730)
T PRK12568 318 PDGFAQFVDACHRAGIGVILDWVSAHFPDDAH 349 (730)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccCCcccc
Confidence 46788889999999999999999999986544
No 23
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=32.93 E-value=25 Score=30.29 Aligned_cols=30 Identities=23% Similarity=0.565 Sum_probs=24.1
Q ss_pred CCCCCCcc-cCC-CCccccc--ccCcccHHhhhC
Q psy10817 140 RSPQPTCR-CGD-ILTVKHI--LTCPLDIQLRSS 169 (199)
Q Consensus 140 ~~~~~~C~-Cg~-~~t~~Hi--~~Cp~~~~~R~~ 169 (199)
....+.|+ ||. .+-++|+ .+||-++..=..
T Consensus 69 y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMAT 102 (415)
T COG5257 69 YTTEPKCPNCGAETELVRRVSFVDAPGHETLMAT 102 (415)
T ss_pred cccCCCCCCCCCCccEEEEEEEeeCCchHHHHHH
Confidence 45679999 998 7999999 899998865443
No 24
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=32.59 E-value=13 Score=19.98 Aligned_cols=19 Identities=37% Similarity=0.826 Sum_probs=6.5
Q ss_pred CCcc-cCCCC-ccccc-ccCcc
Q psy10817 144 PTCR-CGDIL-TVKHI-LTCPL 162 (199)
Q Consensus 144 ~~C~-Cg~~~-t~~Hi-~~Cp~ 162 (199)
|.|+ |+... =.+.. +.||-
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~ 24 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPE 24 (30)
T ss_dssp ---TTT-----EE-SSSEEETT
T ss_pred CCCCCCCCcceeccCCEEeCCc
Confidence 6788 88733 34444 66663
No 25
>KOG0466|consensus
Probab=31.16 E-value=32 Score=29.45 Aligned_cols=31 Identities=29% Similarity=0.551 Sum_probs=24.2
Q ss_pred cCCCCCCCcc-cCC---CCccccc--ccCcccHHhhh
Q psy10817 138 FSRSPQPTCR-CGD---ILTVKHI--LTCPLDIQLRS 168 (199)
Q Consensus 138 ~~~~~~~~C~-Cg~---~~t~~Hi--~~Cp~~~~~R~ 168 (199)
-++.++|.|+ ||. ..-++|+ .+||-+.-.=.
T Consensus 104 S~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMa 140 (466)
T KOG0466|consen 104 SSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMA 140 (466)
T ss_pred CCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHH
Confidence 4578999999 886 4689999 89998764433
No 26
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=30.92 E-value=26 Score=22.16 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=12.8
Q ss_pred CCCCcc-cCC-CCc-cccc-ccCcc
Q psy10817 142 PQPTCR-CGD-ILT-VKHI-LTCPL 162 (199)
Q Consensus 142 ~~~~C~-Cg~-~~t-~~Hi-~~Cp~ 162 (199)
.|-.|+ ||. .+. ...- +.||.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~ 51 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPN 51 (69)
T ss_pred CccCccCcccccccccccceEEcCC
Confidence 467788 886 333 3444 77774
No 27
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=30.64 E-value=26 Score=21.71 Aligned_cols=9 Identities=33% Similarity=0.885 Sum_probs=4.2
Q ss_pred cccc-ccCcc
Q psy10817 154 VKHI-LTCPL 162 (199)
Q Consensus 154 ~~Hi-~~Cp~ 162 (199)
..|+ |+||.
T Consensus 10 ~~~v~~~Cp~ 19 (55)
T PF13824_consen 10 PAHVNFECPD 19 (55)
T ss_pred ccccCCcCCC
Confidence 4444 55543
No 28
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.19 E-value=25 Score=19.31 Aligned_cols=9 Identities=33% Similarity=1.040 Sum_probs=5.6
Q ss_pred CCCCcc-cCC
Q psy10817 142 PQPTCR-CGD 150 (199)
Q Consensus 142 ~~~~C~-Cg~ 150 (199)
.+..|+ ||.
T Consensus 17 ~p~~CP~Cg~ 26 (34)
T cd00729 17 APEKCPICGA 26 (34)
T ss_pred CCCcCcCCCC
Confidence 445677 765
No 29
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=30.14 E-value=27 Score=25.02 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=23.0
Q ss_pred cc-cCCCCccccc--ccCcccHHhhhCCCCCCCCchhccCHHH---HHHHHHHhccc
Q psy10817 146 CR-CGDILTVKHI--LTCPLDIQLRSSLPNPPSLTDETTGVDA---LMSLLKSLNIF 196 (199)
Q Consensus 146 C~-Cg~~~t~~Hi--~~Cp~~~~~R~~l~~~~~l~~~~l~~~~---~~~F~~~t~~~ 196 (199)
|| ||....|..+ -.|..- .+..+..+.... |+.++ +..|++..|=+
T Consensus 1 CPvCg~~l~vt~l~C~~C~t~--i~G~F~l~~~~~---L~~E~~~Fi~~Fi~~rGnl 52 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGTE--IEGEFELPWFAR---LSPEQLEFIKLFIKNRGNL 52 (113)
T ss_pred CCCCCCceEEEEEEcCCCCCE--EEeeeccchhhc---CCHHHHHHHHHHHHhcCCH
Confidence 88 9987766665 444432 233333332222 44332 45666666544
No 30
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=28.98 E-value=62 Score=24.47 Aligned_cols=34 Identities=15% Similarity=0.028 Sum_probs=24.6
Q ss_pred HHHHHHH--cCCeeEEEEecCCCCCccchhhhhhhCCC
Q psy10817 23 TWLDLVA--CGKEISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 23 ~~~~l~~--~~~~i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
++..|.+ .+..|.+.||||=-.||- .|.++++..
T Consensus 18 A~~~L~~~g~g~~i~v~~VPGa~EiP~--aak~l~~~~ 53 (151)
T TIGR01506 18 AIDELRKHTAGIKIIRRTVPGIKDLPV--AAKKLLEEE 53 (151)
T ss_pred HHHHHHhcCCCCeEEEEECCcHhHHHH--HHHHHHhcC
Confidence 3445656 788899999999988872 466677544
No 31
>KOG4602|consensus
Probab=28.50 E-value=29 Score=28.53 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=19.1
Q ss_pred CCCCcc-cCCCCccccc-ccCccc
Q psy10817 142 PQPTCR-CGDILTVKHI-LTCPLD 163 (199)
Q Consensus 142 ~~~~C~-Cg~~~t~~Hi-~~Cp~~ 163 (199)
.+-.|+ ||...+-.|. -.||+-
T Consensus 267 R~YVCPiCGATgDnAHTiKyCPl~ 290 (318)
T KOG4602|consen 267 RSYVCPICGATGDNAHTIKYCPLA 290 (318)
T ss_pred hhhcCccccccCCcccceeccccc
Confidence 456799 9999999999 999984
No 32
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=27.91 E-value=73 Score=23.71 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=25.8
Q ss_pred HHHHHHHcCC---eeEEEEecCCCCCccchhhhhhhCCC
Q psy10817 23 TWLDLVACGK---EISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 23 ~~~~l~~~~~---~i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
.+..|.+.|. .|...||||=-.+| =.|.++++..
T Consensus 25 a~~~l~~~g~~~~~i~~~~VPGa~ElP--~a~~~l~~~~ 61 (144)
T PF00885_consen 25 ALEELKRHGVAEENIEVIRVPGAFELP--LAAKRLAESG 61 (144)
T ss_dssp HHHHHHHTTTTGGCEEEEEESSGGGHH--HHHHHHHHCS
T ss_pred HHHHHHHcCCCccceEEEEcCCHHHHH--HHHHHHhccc
Confidence 3445667777 89999999998887 3677777765
No 33
>KOG1994|consensus
Probab=27.50 E-value=27 Score=28.24 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=15.7
Q ss_pred Ccc-cCC-CCccccc-ccCccc
Q psy10817 145 TCR-CGD-ILTVKHI-LTCPLD 163 (199)
Q Consensus 145 ~C~-Cg~-~~t~~Hi-~~Cp~~ 163 (199)
.|- ||. ..|.+.+ .+||-.
T Consensus 241 YC~fCG~~y~~~edl~ehCPGv 262 (268)
T KOG1994|consen 241 YCFFCGIKYKDEEDLYEHCPGV 262 (268)
T ss_pred EEEEeccccCCHHHHHHhCCCC
Confidence 355 998 8999999 999964
No 34
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=27.24 E-value=64 Score=24.57 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=22.5
Q ss_pred HHHHcC---CeeEEEEecCCCCCccchhhhhhhCCC
Q psy10817 26 DLVACG---KEISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 26 ~l~~~~---~~i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
.|.+.| ..|.+.||||=--|| -.|.++|+..
T Consensus 35 ~l~~~G~~~~~i~v~~VPGA~EiP--~~a~~l~~~~ 68 (158)
T PRK12419 35 EIAARGGAASQVDIFDVPGAFEIP--LHAQTLAKTG 68 (158)
T ss_pred HHHHcCCCccceEEEECCcHHHHH--HHHHHHHhcC
Confidence 466677 569999999987777 2556677654
No 35
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=27.17 E-value=66 Score=24.32 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=24.0
Q ss_pred HHHHHHcC---CeeEEEEecCCCCCccchhhhhhhCCC
Q psy10817 24 WLDLVACG---KEISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 24 ~~~l~~~~---~~i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
+..|...| ..|.+.||||=-.||- .|.++|+..
T Consensus 35 ~~~l~~~gv~~~~i~v~~VPGa~EiP~--a~~~l~~~~ 70 (154)
T PRK00061 35 LDALKRHGVSEENIDVVRVPGAFEIPL--AAKKLAESG 70 (154)
T ss_pred HHHHHHcCCCccceEEEECCCHHHHHH--HHHHHHHcC
Confidence 33466677 6799999999988873 556677654
No 36
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=26.76 E-value=1.9e+02 Score=22.94 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHcCCeeEEEEecCCCCCccchhhhhhhCCCCCCCCCCCCCCHHhhHHHHHHH
Q psy10817 24 WLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKI 80 (199)
Q Consensus 24 ~~~l~~~~~~i~l~WvPgH~gi~gNE~AD~~Ak~a~~~~~~~~~~s~~~~k~~~k~~ 80 (199)
..+|...|...-+.++-||-+|+ +|=++=|.++-++...|. +.+++...++..
T Consensus 67 q~~L~~~~~~~PVIfiTGhgDIp---maV~AmK~GAvDFLeKP~-~~q~Lldav~~A 119 (202)
T COG4566 67 QDRLAERGIRLPVIFLTGHGDIP---MAVQAMKAGAVDFLEKPF-SEQDLLDAVERA 119 (202)
T ss_pred HHHHHhcCCCCCEEEEeCCCChH---HHHHHHHcchhhHHhCCC-chHHHHHHHHHH
Confidence 34466779888889999999999 888888888777654443 444444444333
No 37
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=26.27 E-value=29 Score=24.72 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=15.3
Q ss_pred CCCCCcc-cCCCCccccc-ccCcccH
Q psy10817 141 SPQPTCR-CGDILTVKHI-LTCPLDI 164 (199)
Q Consensus 141 ~~~~~C~-Cg~~~t~~Hi-~~Cp~~~ 164 (199)
...-.|. ||..-.+... +.||.-.
T Consensus 68 p~~~~C~~Cg~~~~~~~~~~~CP~Cg 93 (113)
T PRK12380 68 PAQAWCWDCSQVVEIHQHDAQCPHCH 93 (113)
T ss_pred CcEEEcccCCCEEecCCcCccCcCCC
Confidence 4446687 8875555555 7788654
No 38
>PLN03244 alpha-amylase; Provisional
Probab=26.21 E-value=1.1e+02 Score=29.71 Aligned_cols=31 Identities=6% Similarity=-0.147 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCeeEEEEecCCCCCcc
Q psy10817 17 LSKIYSTWLDLVACGKEISFMWCPSHCGISG 47 (199)
Q Consensus 17 i~~i~~~~~~l~~~~~~i~l~WvPgH~gi~g 47 (199)
..+.+..+.++.++|..|-|-|||+|.+-.+
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~ 470 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADE 470 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCcc
Confidence 4577888889999999999999999998543
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=26.14 E-value=1.3e+02 Score=22.85 Aligned_cols=29 Identities=10% Similarity=-0.052 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCeeEEEEecCCCCC
Q psy10817 17 LSKIYSTWLDLVACGKEISFMWCPSHCGI 45 (199)
Q Consensus 17 i~~i~~~~~~l~~~~~~i~l~WvPgH~gi 45 (199)
..+....+.++.++|..|-+-.||-|++.
T Consensus 69 ~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 69 MEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 36778888889999999999999999987
No 40
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=26.11 E-value=15 Score=22.80 Aligned_cols=23 Identities=30% Similarity=0.652 Sum_probs=11.3
Q ss_pred ccccccccccccccC--CCCCCCcccCC
Q psy10817 125 MRIGHTRLTHSYLFS--RSPQPTCRCGD 150 (199)
Q Consensus 125 lrTGH~~l~h~~l~~--~~~~~~C~Cg~ 150 (199)
--+|||+. |+-+ .+..|.|.|+.
T Consensus 18 ~CSGHGr~---flDg~~~dG~p~CECn~ 42 (56)
T PF04863_consen 18 SCSGHGRA---FLDGLIADGSPVCECNS 42 (56)
T ss_dssp --TTSEE-----TTS-EETTEE--EE-T
T ss_pred CcCCCCee---eeccccccCCccccccC
Confidence 46899886 5533 45669999885
No 41
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=25.78 E-value=31 Score=24.66 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=16.5
Q ss_pred CCCCCCcc-cCCCCccccc-ccCcccH
Q psy10817 140 RSPQPTCR-CGDILTVKHI-LTCPLDI 164 (199)
Q Consensus 140 ~~~~~~C~-Cg~~~t~~Hi-~~Cp~~~ 164 (199)
....-.|. ||..-++... +.||.-.
T Consensus 67 ~p~~~~C~~Cg~~~~~~~~~~~CP~Cg 93 (115)
T TIGR00100 67 EPVECECEDCSEEVSPEIDLYRCPKCH 93 (115)
T ss_pred eCcEEEcccCCCEEecCCcCccCcCCc
Confidence 34456788 8876666555 7888753
No 42
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=25.68 E-value=17 Score=19.09 Aligned_cols=17 Identities=35% Similarity=1.071 Sum_probs=6.1
Q ss_pred Ccc-cCC--CCccccc-ccCc
Q psy10817 145 TCR-CGD--ILTVKHI-LTCP 161 (199)
Q Consensus 145 ~C~-Cg~--~~t~~Hi-~~Cp 161 (199)
.|+ ||. ....+-+ +.|+
T Consensus 1 ~CP~C~s~l~~~~~ev~~~C~ 21 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEVDIRCP 21 (28)
T ss_dssp B-TTT--BEEE-CCTTCEEE-
T ss_pred CcCCCCCEeEcCCCCEeEECC
Confidence 488 886 3334444 5554
No 43
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=25.44 E-value=41 Score=21.20 Aligned_cols=21 Identities=33% Similarity=0.812 Sum_probs=14.7
Q ss_pred CCCcc-cCC-CCccccc--ccCccc
Q psy10817 143 QPTCR-CGD-ILTVKHI--LTCPLD 163 (199)
Q Consensus 143 ~~~C~-Cg~-~~t~~Hi--~~Cp~~ 163 (199)
.+.|. ||. ..-.++. |.||.-
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPnC 33 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPNC 33 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCCC
Confidence 68899 997 3355555 888853
No 44
>PRK14706 glycogen branching enzyme; Provisional
Probab=25.25 E-value=1e+02 Score=28.92 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCeeEEEEecCCCCCcc
Q psy10817 17 LSKIYSTWLDLVACGKEISFMWCPSHCGISG 47 (199)
Q Consensus 17 i~~i~~~~~~l~~~~~~i~l~WvPgH~gi~g 47 (199)
..+.+..+.++..+|..|-+-|||.|.|-.+
T Consensus 216 ~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~ 246 (639)
T PRK14706 216 PEDFKYLVNHLHGLGIGVILDWVPGHFPTDE 246 (639)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccCcch
Confidence 4678888899999999999999999987543
No 45
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=25.04 E-value=1.4e+02 Score=27.14 Aligned_cols=35 Identities=20% Similarity=0.463 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeeEEEEecCC-CCCccc
Q psy10817 14 NALLSKIYSTWLDLVACGKEISFMWCPSH-CGISGN 48 (199)
Q Consensus 14 ~~~i~~i~~~~~~l~~~~~~i~l~WvPgH-~gi~gN 48 (199)
+.+..++..-+.+|.+.|.+|-+.-||=| .++.|.
T Consensus 379 ~~Llddl~~F~~~Le~SgR~v~vv~VPEHGAAlrGD 414 (518)
T PF11658_consen 379 QKLLDDLDRFFDELEKSGRKVMVVVVPEHGAALRGD 414 (518)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecCcccccccc
Confidence 45677888888889999999999999999 445543
No 46
>PRK14705 glycogen branching enzyme; Provisional
Probab=24.81 E-value=1.1e+02 Score=31.07 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCeeEEEEecCCCCCcc
Q psy10817 17 LSKIYSTWLDLVACGKEISFMWCPSHCGISG 47 (199)
Q Consensus 17 i~~i~~~~~~l~~~~~~i~l~WvPgH~gi~g 47 (199)
..+.+..+..+.++|..|-+-|||.|.+-.+
T Consensus 814 ~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~ 844 (1224)
T PRK14705 814 PDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS 844 (1224)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccCCcch
Confidence 4678889999999999999999999986543
No 47
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=24.68 E-value=80 Score=23.54 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=22.9
Q ss_pred HHHHcCCe---eEEEEecCCCCCccchhhhhhhCCC
Q psy10817 26 DLVACGKE---ISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 26 ~l~~~~~~---i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
.|...|.. |.+.||||=--|| =.|+++|+..
T Consensus 32 ~l~~~gv~~~~i~v~~VPGa~EiP--~a~~~l~~s~ 65 (141)
T PLN02404 32 TFKRYSVKEENIDVVWVPGSFEIP--VVAQRLAKSG 65 (141)
T ss_pred HHHHcCCCccceEEEEcCcHHHHH--HHHHHHHhcC
Confidence 36667754 8999999998787 3566777655
No 48
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=24.34 E-value=36 Score=20.65 Aligned_cols=20 Identities=25% Similarity=0.730 Sum_probs=12.5
Q ss_pred CCCCcc-cCC-CCccccc--ccCc
Q psy10817 142 PQPTCR-CGD-ILTVKHI--LTCP 161 (199)
Q Consensus 142 ~~~~C~-Cg~-~~t~~Hi--~~Cp 161 (199)
....|+ ||. .--.+|- +.|-
T Consensus 18 k~~~CPrCG~gvfmA~H~dR~~CG 41 (51)
T COG1998 18 KNRFCPRCGPGVFMADHKDRWACG 41 (51)
T ss_pred ccccCCCCCCcchhhhcCceeEec
Confidence 356788 885 5556666 5553
No 49
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=24.26 E-value=1.2e+02 Score=27.63 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCeeEEEEecCCCCCccch
Q psy10817 17 LSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 49 (199)
Q Consensus 17 i~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gNE 49 (199)
+.+.+..+..+.++|..|-|-+|+.|+|-.||-
T Consensus 159 ~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~ 191 (542)
T TIGR02402 159 PDDLKALVDAAHGLGLGVILDVVYNHFGPEGNY 191 (542)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccCCCCCcccc
Confidence 467888889999999999999999999876654
No 50
>PRK00420 hypothetical protein; Validated
Probab=24.15 E-value=44 Score=23.89 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=5.5
Q ss_pred CCCCCCcc-cCC
Q psy10817 140 RSPQPTCR-CGD 150 (199)
Q Consensus 140 ~~~~~~C~-Cg~ 150 (199)
+...-.|+ ||.
T Consensus 37 k~g~~~Cp~Cg~ 48 (112)
T PRK00420 37 KDGEVVCPVHGK 48 (112)
T ss_pred CCCceECCCCCC
Confidence 44444555 554
No 51
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=23.61 E-value=46 Score=21.21 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=8.5
Q ss_pred CCCCCCcc-cCCC
Q psy10817 140 RSPQPTCR-CGDI 151 (199)
Q Consensus 140 ~~~~~~C~-Cg~~ 151 (199)
..+...|+ ||..
T Consensus 15 ~~d~e~CP~Cgs~ 27 (64)
T COG2093 15 PEDTEICPVCGST 27 (64)
T ss_pred CCCCccCCCCCCc
Confidence 34556699 9974
No 52
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533).
Probab=22.88 E-value=1.6e+02 Score=26.69 Aligned_cols=35 Identities=20% Similarity=0.486 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeeEEEEecCC-CCCccc
Q psy10817 14 NALLSKIYSTWLDLVACGKEISFMWCPSH-CGISGN 48 (199)
Q Consensus 14 ~~~i~~i~~~~~~l~~~~~~i~l~WvPgH-~gi~gN 48 (199)
+.+..++..-+.+|.+.|.+|-+..||-| .++.|.
T Consensus 376 ~kLlddld~F~~~le~SgR~vvVv~VPEHGAAlrGD 411 (518)
T TIGR03368 376 KKLLDDLDRFFDELEKSGRKVVVVLVPEHGAALRGD 411 (518)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecCcchhcccc
Confidence 35667777788889999999999999999 445553
No 53
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=22.55 E-value=40 Score=24.00 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=14.7
Q ss_pred CCCCCcc-cCC-CCccccc-ccCcccH
Q psy10817 141 SPQPTCR-CGD-ILTVKHI-LTCPLDI 164 (199)
Q Consensus 141 ~~~~~C~-Cg~-~~t~~Hi-~~Cp~~~ 164 (199)
...-.|. ||. .....+. +.||.-.
T Consensus 68 p~~~~C~~Cg~~~~~~~~~~~~CP~Cg 94 (114)
T PRK03681 68 EAECWCETCQQYVTLLTQRVRRCPQCH 94 (114)
T ss_pred CcEEEcccCCCeeecCCccCCcCcCcC
Confidence 4456687 887 3344555 7788643
No 54
>PRK12313 glycogen branching enzyme; Provisional
Probab=22.50 E-value=1.4e+02 Score=27.83 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCeeEEEEecCCCCCccc
Q psy10817 17 LSKIYSTWLDLVACGKEISFMWCPSHCGISGN 48 (199)
Q Consensus 17 i~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gN 48 (199)
..+.+..+.++.++|..|-|-+||.|++..++
T Consensus 219 ~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~ 250 (633)
T PRK12313 219 PEDFMYLVDALHQNGIGVILDWVPGHFPKDDD 250 (633)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCcc
Confidence 35788888999999999999999999987654
No 55
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=22.40 E-value=46 Score=23.63 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=13.9
Q ss_pred CCCcc-cCCCCccccc--ccCcccH
Q psy10817 143 QPTCR-CGDILTVKHI--LTCPLDI 164 (199)
Q Consensus 143 ~~~C~-Cg~~~t~~Hi--~~Cp~~~ 164 (199)
.|.|+ |+..-|-+.= +.||--.
T Consensus 2 lp~CP~C~seytY~dg~~~iCpeC~ 26 (109)
T TIGR00686 2 LPPCPKCNSEYTYHDGTQLICPSCL 26 (109)
T ss_pred CCcCCcCCCcceEecCCeeECcccc
Confidence 37899 9974444333 7787543
No 56
>KOG3243|consensus
Probab=22.23 E-value=1.1e+02 Score=22.70 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=13.8
Q ss_pred cCCeeEEEEecCCCCCc
Q psy10817 30 CGKEISFMWCPSHCGIS 46 (199)
Q Consensus 30 ~~~~i~l~WvPgH~gi~ 46 (199)
+-..|.+.||||--.++
T Consensus 49 ~eenI~ie~VPGS~Elp 65 (158)
T KOG3243|consen 49 REENIEIEWVPGSFELP 65 (158)
T ss_pred chhceeEEEcCCceecc
Confidence 44579999999997776
No 57
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=22.21 E-value=1.5e+02 Score=27.64 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCeeEEEEecCCCCCccchh
Q psy10817 17 LSKIYSTWLDLVACGKEISFMWCPSHCGISGNEA 50 (199)
Q Consensus 17 i~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gNE~ 50 (199)
..+.+..+..+.++|..|-|-+||.|+|..++..
T Consensus 205 ~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~ 238 (613)
T TIGR01515 205 PDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGL 238 (613)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccCcCCccchh
Confidence 3578888889999999999999999999766543
No 58
>PRK06455 riboflavin synthase; Provisional
Probab=22.13 E-value=97 Score=23.53 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=23.1
Q ss_pred HHHHHHH--cCCeeEEEEecCCCCCccchhhhhhhCCC
Q psy10817 23 TWLDLVA--CGKEISFMWCPSHCGISGNEAVDVAAKNP 58 (199)
Q Consensus 23 ~~~~l~~--~~~~i~l~WvPgH~gi~gNE~AD~~Ak~a 58 (199)
++..|.. .+..|...||||=-.||- .|.++++..
T Consensus 20 Ai~~L~~~g~~~~I~v~~VPGa~ELP~--aakkL~~~~ 55 (155)
T PRK06455 20 AIDELRKLDPSAKIIRYTVPGIKDLPV--AAKKLIEEE 55 (155)
T ss_pred HHHHHHhcCCCCceEEEECCCHHHHHH--HHHHHHhcC
Confidence 3444555 457899999999887772 455666544
No 59
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=21.49 E-value=44 Score=18.30 Aligned_cols=16 Identities=38% Similarity=0.872 Sum_probs=12.3
Q ss_pred CCcc-cCCCCccccc-ccCcc
Q psy10817 144 PTCR-CGDILTVKHI-LTCPL 162 (199)
Q Consensus 144 ~~C~-Cg~~~t~~Hi-~~Cp~ 162 (199)
=.|. |+..+ |+ -+||.
T Consensus 9 Y~C~~C~~~G---H~i~dCP~ 26 (32)
T PF13696_consen 9 YVCHRCGQKG---HWIQDCPT 26 (32)
T ss_pred CEeecCCCCC---ccHhHCCC
Confidence 3577 77655 99 99998
No 60
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=20.82 E-value=46 Score=22.54 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=7.9
Q ss_pred CCCCcc-cCCC
Q psy10817 142 PQPTCR-CGDI 151 (199)
Q Consensus 142 ~~~~C~-Cg~~ 151 (199)
-.+.|+ ||.+
T Consensus 7 ~~~~C~~CG~d 17 (86)
T PF06170_consen 7 VAPRCPHCGLD 17 (86)
T ss_pred CCCcccccCCc
Confidence 358999 9974
No 61
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=20.78 E-value=54 Score=20.27 Aligned_cols=19 Identities=42% Similarity=0.850 Sum_probs=11.1
Q ss_pred Ccc-cCC-------CCc-cccc-ccCccc
Q psy10817 145 TCR-CGD-------ILT-VKHI-LTCPLD 163 (199)
Q Consensus 145 ~C~-Cg~-------~~t-~~Hi-~~Cp~~ 163 (199)
.|+ ||. .+| ...+ +.||.-
T Consensus 6 ~CP~CgnKTR~kir~DT~LkNfPlyCpKC 34 (55)
T PF14205_consen 6 LCPICGNKTRLKIREDTVLKNFPLYCPKC 34 (55)
T ss_pred ECCCCCCccceeeecCceeccccccCCCC
Confidence 478 883 122 3456 788764
No 62
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=20.68 E-value=78 Score=19.68 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=18.5
Q ss_pred CCCCCCcc-cCCCCccccc-ccCcccH
Q psy10817 140 RSPQPTCR-CGDILTVKHI-LTCPLDI 164 (199)
Q Consensus 140 ~~~~~~C~-Cg~~~t~~Hi-~~Cp~~~ 164 (199)
...--.|+ ||+..-.-|+ ..|-.|.
T Consensus 24 ~~~l~~C~~CG~~~~~H~vC~~CG~Y~ 50 (57)
T PRK12286 24 APGLVECPNCGEPKLPHRVCPSCGYYK 50 (57)
T ss_pred CCcceECCCCCCccCCeEECCCCCcCC
Confidence 33445699 9997777778 8998774
No 63
>PRK05402 glycogen branching enzyme; Provisional
Probab=20.56 E-value=1.6e+02 Score=27.98 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCeeEEEEecCCCCCccc
Q psy10817 17 LSKIYSTWLDLVACGKEISFMWCPSHCGISGN 48 (199)
Q Consensus 17 i~~i~~~~~~l~~~~~~i~l~WvPgH~gi~gN 48 (199)
..+.+..+.++.++|..|-|-|||.|++-.++
T Consensus 314 ~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~ 345 (726)
T PRK05402 314 PDDFRYFVDACHQAGIGVILDWVPAHFPKDAH 345 (726)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCcc
Confidence 46778888889999999999999999976544
Done!