RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10817
         (199 letters)



>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 33.3 bits (75), Expect = 0.005
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 19  KIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 56
           KI +  ++ +   + I   W P+H GI GN+ VD    
Sbjct: 86  KIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVS 123


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 32.7 bits (73), Expect = 0.013
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 24  WLDLVACGKEISFMWCPSHCGISGNEAVD----VAAKNPS 59
            LD      +I + W   H G   NE  D     AA NP+
Sbjct: 104 RLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMNPT 143


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 31.1 bits (69), Expect = 0.042
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 36  FMWCPSHCGISGNEAVDVAAKN 57
           F +   H G   NE VD  A+ 
Sbjct: 118 FHFVKGHTGHPENERVDREARR 139


>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa
           (Medicago sativa) [TaxId: 3879]}
          Length = 110

 Score = 24.0 bits (52), Expect = 7.2
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 165 QLRSSLPNPPSLTDETTGVDALMSLLKSLNIF 196
           ++ S LP     +D    +D ++ LL S ++ 
Sbjct: 49  EIASKLPASTQHSDLPNRLDRMLRLLASYSVL 80


>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal
           subdomain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 111

 Score = 23.9 bits (52), Expect = 8.2
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 7/45 (15%)

Query: 77  IKKIVQRNWQSSWNSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVV 121
           I+K+++ N++++W+ V +  +        E +  S  KT LEE V
Sbjct: 2   IQKVMKLNFEAAWDEVGDEFEK------EETFTLSTIKT-LEEAV 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.407 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 751,721
Number of extensions: 33591
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 10
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)