BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10818
         (274 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1
          Length = 240

 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 89/119 (74%)

Query: 130 SALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEI 189
           SALEIAEQ+T +D+ +FKSI  EEFFGQ W+K+EK  + P+I+  T+ FN +S  +A+EI
Sbjct: 5   SALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEI 64

Query: 190 LNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVR 248
           +   ++S R   IEKW+AVA+I R L+N+N VL I S++N S++FRLKKTW KVSK  +
Sbjct: 65  IRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTK 123


>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
           (Rem-Cdc25) In The Absence Of Ras
          Length = 490

 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 31/234 (13%)

Query: 28  EVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 87
           E++  RKE +      ++VLNV +HW+  H  DF +D  L    L+ +EE + T      
Sbjct: 114 ELKRFRKEYIQPVQ--LRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT-----V 162

Query: 88  EYKAATQLTQMLTKACTK----------HETNLQDLLAPPP---QVANKENIET-----L 129
             KA  +  + +TK   +          H    Q   +PP     ++   +IET     L
Sbjct: 163 RGKAMKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTVEWHISRPGHIETFDLLTL 220

Query: 130 SALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEI 189
             +EIA Q+T ++  ++++++  E  G  W K +K   +P+++   +    ++      I
Sbjct: 221 HPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCI 280

Query: 190 LNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKV 243
           +   N+ +RV V+ + I +  + + LNNFNGVL ++SAMN+S V+RL  T++++
Sbjct: 281 VETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 334


>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
          Length = 484

 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 31/234 (13%)

Query: 28  EVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 87
           E++  RKE +      ++VLNV +HW+  H  DF +D  L    L+ +EE + T      
Sbjct: 108 ELKRFRKEYIQPVQ--LRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT-----V 156

Query: 88  EYKAATQLTQMLTKACTK----------HETNLQDLLAPPP---QVANKENIET-----L 129
             KA  +  + +TK   +          H    Q   +PP     ++   +IET     L
Sbjct: 157 RGKAMKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTVEWHISRPGHIETFDLLTL 214

Query: 130 SALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEI 189
             +EIA Q+T ++  ++++++  E  G  W K +K   +P+++   +    ++      I
Sbjct: 215 HPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCI 274

Query: 190 LNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKV 243
           +   N+ +RV V+ + I +  + + LNNFNGVL ++SAMN+S V+RL  T++++
Sbjct: 275 VETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 328


>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-Specific Nucleotide Exchange Factor Sos
 pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-specific Nucleotide Exchange Factor Sos
 pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-specific Nucleotide Exchange Factor Sos
 pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-Specific Nucleotide Exchange Factor Sos
          Length = 481

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 31/234 (13%)

Query: 28  EVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 87
           E++  RKE +      ++VLNV +HW+  H  DF +D  L    L+ +EE + T      
Sbjct: 108 ELKRFRKEYIQPVQ--LRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT-----V 156

Query: 88  EYKAATQLTQMLTKACTK----------HETNLQDLLAPPP---QVANKENIET-----L 129
             KA  +  + +TK   +          H    Q   +PP     ++   +IET     L
Sbjct: 157 RGKAMKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTVEWHISRPGHIETFDLLTL 214

Query: 130 SALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEI 189
             +EIA Q+T ++  ++++++  E  G  W K +K   +P+++   +    ++      I
Sbjct: 215 HPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCI 274

Query: 190 LNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKV 243
           +   N+ +RV V+ + I +  + + LNNFNGVL ++SAMN+S V+RL  T++++
Sbjct: 275 VETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 328


>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
          Length = 477

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 31/234 (13%)

Query: 28  EVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 87
           E++  RKE +      ++VLNV +HW+  H  DF +D  L    L+ +EE + T      
Sbjct: 106 ELKRFRKEYIQPVQ--LRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT-----V 154

Query: 88  EYKAATQLTQMLTKACTK----------HETNLQDLLAPPP---QVANKENIET-----L 129
             KA  +  + +TK   +          H    Q   +PP     ++   +IET     L
Sbjct: 155 RGKAMKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTVEWHISRPGHIETFDLLTL 212

Query: 130 SALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEI 189
             +EIA Q+T ++  ++++++  E  G  W K +K   +P+++   +    ++      I
Sbjct: 213 HPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCI 272

Query: 190 LNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKV 243
           +   N+ +RV V+ + I +  + + LNNFNGVL ++SAMN+S V+RL  T++++
Sbjct: 273 VETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 326


>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
           Catalytic Unit Of The Ras Activator Son Of Sevenless
           (Sos)
          Length = 1049

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 31/234 (13%)

Query: 28  EVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 87
           E++  RKE +      ++VLNV +HW+  H  DF +D  L    L+ +EE + T      
Sbjct: 673 ELKRFRKEYIQPV--QLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT-----V 721

Query: 88  EYKAATQLTQMLTKACTK----------HETNLQDLLAPPP---QVANKENIET-----L 129
             KA  +  + +TK   +          H    Q   +PP     ++   +IET     L
Sbjct: 722 RGKAMKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTVEWHISRPGHIETFDLLTL 779

Query: 130 SALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEI 189
             +EIA Q+T ++  ++++++  E  G  W K +K   +P+++   +    ++      I
Sbjct: 780 HPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCI 839

Query: 190 LNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKV 243
           +   N+ +RV V+ + I +  + + LNNFNGVL ++SAMN+S V+RL  T++++
Sbjct: 840 VETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 893


>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
           Sevenless (Sos)
 pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
           Sevenless (Sos)
          Length = 852

 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 31/234 (13%)

Query: 28  EVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 87
           E++  RKE +      ++VLNV +HW+  H  DF +D  L    L+ +EE + T      
Sbjct: 476 ELKRFRKEYIQPV--QLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT-----V 524

Query: 88  EYKAATQLTQMLTKACTK----------HETNLQDLLAPPP---QVANKENIET-----L 129
             KA  +  + +TK   +          H    Q   +PP     ++   +IET     L
Sbjct: 525 RGKAMKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTVEWHISRPGHIETFDLLTL 582

Query: 130 SALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEI 189
             +EIA Q+T ++  ++++++  E  G  W K +K   +P+++   +    ++      I
Sbjct: 583 HPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCI 642

Query: 190 LNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKV 243
           +   N+ +RV V+ + I +  + + LNNFNGVL ++SAMN+S V+RL  T++++
Sbjct: 643 VETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 696


>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
           Sevenless Protein At 4.1 Ang.
 pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
           Sevenless Protein At 4.1 Ang
          Length = 847

 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 31/234 (13%)

Query: 28  EVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPA 87
           E++  RKE +      ++VLNV +HW+  H  DF +D  L    L+ +EE + T      
Sbjct: 476 ELKRFRKEYIQPV--QLRVLNVCRHWVEHHFYDFERDAYL----LQRMEEFIGT-----V 524

Query: 88  EYKAATQLTQMLTKACTK----------HETNLQDLLAPPP---QVANKENIET-----L 129
             KA  +  + +TK   +          H    Q   +PP     ++   +IET     L
Sbjct: 525 RGKAMKKWVESITKIIQRKKIARDNGPGHNITFQS--SPPTVEWHISRPGHIETFDLLTL 582

Query: 130 SALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEI 189
             +EIA Q+T ++  ++++++  E  G  W K +K   +P+++   +    ++      I
Sbjct: 583 HPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCI 642

Query: 190 LNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKV 243
           +   N+ +RV V+ + I +  + + LNNFNGVL ++SAMN+S V+RL  T++++
Sbjct: 643 VETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 696


>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
           Guanine- Nucleotide Exchange Factor Ralgps1a
 pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
           Guanine- Nucleotide Exchange Factor Ralgps1a
          Length = 271

 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 67/108 (62%)

Query: 133 EIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNR 192
           E A Q+T +D  +FK+I+ EE     W K EK + AP++V FT+RFN +S  V  EIL  
Sbjct: 35  EFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTA 94

Query: 193 SNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTW 240
             +  R  ++  ++ +A  L  LNN + +++++SA+ ++ +FRL KTW
Sbjct: 95  QTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTW 142


>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
           Activated By Camp
          Length = 999

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 62/126 (49%)

Query: 118 PQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQR 177
           P        E +S+ ++A QMT  D+ +F  +   E     + +        ++ LF +R
Sbjct: 748 PTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRR 807

Query: 178 FNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLK 237
           FN +   V  E+   S +S+RV +++K+I +A   +   N N    I+  ++N +V RL 
Sbjct: 808 FNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLA 867

Query: 238 KTWDKV 243
            TW+K+
Sbjct: 868 LTWEKL 873


>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
           Its Auto-Inhibited State
          Length = 999

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 62/126 (49%)

Query: 118 PQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQR 177
           P        E +S+ ++A QMT  D+ +F  +   E     + +        ++ LF +R
Sbjct: 748 PTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRR 807

Query: 178 FNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLK 237
           FN +   V  E+   S +S+RV +++K+I +A   +   N N    I+  ++N +V RL 
Sbjct: 808 FNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLA 867

Query: 238 KTWDKV 243
            TW+K+
Sbjct: 868 LTWEKL 873


>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
          Length = 694

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 62/126 (49%)

Query: 118 PQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQR 177
           P        E +S+ ++A QMT  D+ +F  +   E     + +        ++ LF +R
Sbjct: 443 PTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRR 502

Query: 178 FNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLK 237
           FN +   V  E+   S +S+RV +++K+I +A   +   N N    I+  ++N +V RL 
Sbjct: 503 FNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLA 562

Query: 238 KTWDKV 243
            TW+K+
Sbjct: 563 LTWEKL 568


>pdb|3T6G|A Chain A, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
 pdb|3T6G|C Chain C, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
          Length = 331

 Score = 37.4 bits (85), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 12/128 (9%)

Query: 123 KENIETLSALEIAEQMTYIDYHIFKSI----RSEEFFGQAWLKSEKLTKAPHI----VLF 174
           KE +  + A  +A  +T +D  + + +      +   G  W    +L   PH     +  
Sbjct: 42  KELLAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRW--GMELLTLPHGRQLRLDL 99

Query: 175 TQRFNTMSKLVANEILNRSNMS-QRVHVIEKWIAVANILRF-LNNFNGVLTIISAMNNSS 232
            +RF+TMS ++A +IL  +  + +R  ++ K I +A  LR  + N      ++ A++ + 
Sbjct: 100 LERFHTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQ 159

Query: 233 VFRLKKTW 240
           + RL++TW
Sbjct: 160 ISRLEQTW 167


>pdb|3D3Y|A Chain A, Crystal Structure Of A Conserved Protein From Enterococcus
           Faecalis V583
          Length = 425

 Score = 31.2 bits (69), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 51  QHW--ISKH--TQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAAT 93
           QHW  IS +     ++QD ++    ++FL+EI+  PN+   +++A T
Sbjct: 85  QHWFNISXNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAET 131


>pdb|1L9K|A Chain A, Dengue Methyltransferase
 pdb|2P1D|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
           With Gtp And S-Adenosyl-L-Homocysteine
 pdb|2P3L|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
           With Gpppa And S-Adenosyl-L-Homocysteine
 pdb|2P3O|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
           With 7megpppa And S-adenosyl-l-homocysteine
 pdb|2P3Q|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
           With Gpppg And S-Adenosyl-L-Homocysteine
 pdb|2P40|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
           With 7megpppg
 pdb|2P41|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
           With 7megpppg2'ome And S-Adenosyl-L-Homocysteine
          Length = 305

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 18/22 (81%)

Query: 38  LSTARTMQVLNVLQHWISKHTQ 59
           +   RT++VLN++++W+S +TQ
Sbjct: 165 VEAGRTLRVLNLVENWLSNNTQ 186


>pdb|1R6A|A Chain A, Structure Of The Dengue Virus 2'o Methyltransferase In
           Complex With S-Adenosyl Homocysteine And Ribavirin 5'
           Triphosphate
          Length = 295

 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 18/22 (81%)

Query: 38  LSTARTMQVLNVLQHWISKHTQ 59
           +   RT++VLN++++W+S +TQ
Sbjct: 155 VEAGRTLRVLNLVENWLSNNTQ 176


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.128    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,058,455
Number of Sequences: 62578
Number of extensions: 249210
Number of successful extensions: 816
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 21
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)