Query psy10818
Match_columns 274
No_of_seqs 166 out of 1125
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 19:16:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00147 RasGEF Guanine nucl 100.0 1.7E-37 3.6E-42 275.4 15.0 148 126-273 1-159 (242)
2 cd00155 RasGEF Guanine nucleot 100.0 3.1E-37 6.6E-42 272.6 14.9 148 126-273 1-160 (237)
3 PF00617 RasGEF: RasGEF domain 100.0 1.4E-36 3E-41 258.6 8.5 147 127-273 1-158 (188)
4 KOG3629|consensus 100.0 1.4E-27 3.1E-32 224.0 15.6 215 49-266 136-356 (728)
5 KOG3542|consensus 100.0 1.9E-28 4.1E-33 234.8 9.5 148 124-272 862-1020(1283)
6 KOG3541|consensus 99.9 1.3E-24 2.9E-29 198.8 15.3 141 126-266 205-358 (477)
7 KOG2378|consensus 99.9 1.7E-24 3.7E-29 200.2 9.6 150 124-273 331-490 (573)
8 KOG3417|consensus 99.7 4.2E-18 9.1E-23 175.0 6.4 151 123-273 208-369 (840)
9 KOG3417|consensus 98.4 4.3E-07 9.2E-12 94.1 7.6 136 130-273 609-754 (840)
10 smart00229 RasGEFN Guanine nuc 98.3 1.9E-06 4.1E-11 68.7 7.9 43 39-81 68-110 (127)
11 cd06224 REM Guanine nucleotide 98.1 1.6E-05 3.5E-10 62.6 8.9 43 39-81 63-105 (122)
12 PF00618 RasGEF_N: RasGEF N-te 98.0 6.8E-06 1.5E-10 63.2 4.2 35 40-74 70-104 (104)
13 KOG3542|consensus 80.7 0.9 2E-05 45.9 1.7 46 28-79 470-515 (1283)
14 PF03745 DUF309: Domain of unk 51.5 52 0.0011 22.8 5.2 54 170-223 2-60 (62)
15 KOG3541|consensus 48.0 10 0.00022 36.3 1.4 68 170-237 385-455 (477)
16 PF13877 RPAP3_C: Potential Mo 25.1 1.5E+02 0.0032 21.8 4.4 48 199-248 46-93 (94)
17 PF10281 Ish1: Putative stress 22.0 1.2E+02 0.0027 18.5 2.9 13 50-62 9-21 (38)
18 PF01726 LexA_DNA_bind: LexA D 21.8 1.3E+02 0.0029 20.9 3.3 20 40-59 5-24 (65)
No 1
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=100.00 E-value=1.7e-37 Score=275.37 Aligned_cols=148 Identities=33% Similarity=0.600 Sum_probs=141.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCCCCc-cHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy10818 126 IETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAP-HIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEK 204 (274)
Q Consensus 126 l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p-~i~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~~ 204 (274)
++++||.|||+|||++|+++|++|++.||+...|.+.+....+| +|.+++++||.++.||+.+||.++++++|++++++
T Consensus 1 ~l~~~~~eiA~QlTl~d~~~f~~I~~~El~~~~~~~~~~~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~~~i~~ 80 (242)
T smart00147 1 LLLLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSKKSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRAELLSK 80 (242)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999877666778 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H--hhCcCCcccccCC-------CCCCccc
Q psy10818 205 WIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y--QVQVDLTFSGLPD-------RPAIHYQ 273 (274)
Q Consensus 205 fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l--l~s~~~nfk~yR~-------~pciPf~ 273 (274)
||+||.+|.++||||+++||++||++++|.||++||+.|++++++.++ + ++++++||++||+ .|||||+
T Consensus 81 fI~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~l 159 (242)
T smart00147 81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSCNLPPCVPFL 159 (242)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccch
Confidence 999999999999999999999999999999999999999999999998 5 9999999999997 7999996
No 2
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=100.00 E-value=3.1e-37 Score=272.64 Aligned_cols=148 Identities=34% Similarity=0.585 Sum_probs=140.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCC-CCCccHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy10818 126 IETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKL-TKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEK 204 (274)
Q Consensus 126 l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~-~~~p~i~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~~ 204 (274)
++++||.|||+|||++|+++|++|+|.||+...|.+.... +.+|+|.+++++||.++.||+.+||.++++++|++++++
T Consensus 1 ~l~~d~~eiA~QlTl~~~~lf~~I~~~El~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~ 80 (237)
T cd00155 1 FLSLDPKELAEQLTLLDFELFRKIEPFELLGSLWSKKDKNIHLSPNLERFIERFNNLSNWVASEILLCTNPKKRARLLSK 80 (237)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999886554 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H--hhCcCCcccccCC--------CCCCccc
Q psy10818 205 WIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y--QVQVDLTFSGLPD--------RPAIHYQ 273 (274)
Q Consensus 205 fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l--l~s~~~nfk~yR~--------~pciPf~ 273 (274)
||+||.+|.++||||+++||++||++++|.||++||+.|+++.++.++ + ++++++||++||+ .|||||+
T Consensus 81 ~I~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~~~p~IP~l 160 (237)
T cd00155 81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEVLSSKLKKLFEELEELVDPSRNFKNYRKLLKSVGPNPPCVPFL 160 (237)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCccchhHHHHHHHCCHHHHHHHHHHHHHhCcHhhHHHHHHHHHhcCCCCCCeeeh
Confidence 999999999999999999999999999999999999999999999998 5 9999999999996 5999996
No 3
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=100.00 E-value=1.4e-36 Score=258.59 Aligned_cols=147 Identities=35% Similarity=0.570 Sum_probs=133.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCC-CCccHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy10818 127 ETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLT-KAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKW 205 (274)
Q Consensus 127 ~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~-~~p~i~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~~f 205 (274)
++++|.+||+|||++|+++|++|+|.|++...|.+.+... .+|++..++++||.++.||+.+||.++++++|++++++|
T Consensus 1 ~~~~~~~iA~qlt~~~~~lf~~I~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~~ 80 (188)
T PF00617_consen 1 LDIDPEEIARQLTLLDSELFRKIKPSELLYSVWSKSDKKENQSPNINKLIDRFNKLSNWVISEILSQPDPEERAKIIEKF 80 (188)
T ss_dssp -CS-HHHHHHHHHHHHHHHHHTSSHHHHHGGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCCccChhHHHHHHHhhhHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4789999999999999999999999999999998743222 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H--hhCcCCcccccCC------C-CCCccc
Q psy10818 206 IAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y--QVQVDLTFSGLPD------R-PAIHYQ 273 (274)
Q Consensus 206 I~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l--l~s~~~nfk~yR~------~-pciPf~ 273 (274)
|+||.+|.++|||+++|||++||++++|.||++||+.++++.++.++ + ++++++||++||+ . |||||+
T Consensus 81 I~va~~l~~l~Nf~s~~aI~~~L~s~~i~rL~~tw~~l~~~~~~~~~~l~~l~~~~~~~~~yr~~~~~~~~~~~IP~l 158 (188)
T PF00617_consen 81 IQVAKKLYELGNFNSLMAILSALNSSSIQRLKKTWKSLSKKSKKTFEELESLFSPSNNYKNYREALKKCNPQPCIPFL 158 (188)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHTSHHHHT-HHHHHTSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTSTSSSSB--H
T ss_pred HhHHHHHHHhcCchHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHhhcccchhhHHHHHhhcccccCceeccc
Confidence 99999999999999999999999999999999999999999999888 5 8999999999996 4 999995
No 4
>KOG3629|consensus
Probab=99.95 E-value=1.4e-27 Score=224.00 Aligned_cols=215 Identities=23% Similarity=0.361 Sum_probs=173.0
Q ss_pred HHHHHHhcCccCCcCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhhhccccccccccCCCCCC-CCccccC
Q psy10818 49 VLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDLLAPPPQV-ANKENIE 127 (274)
Q Consensus 49 vl~~Wi~~~~~DF~~~~~L~~~l~~Fl~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~pp~~-~~~~~l~ 127 (274)
|+..|++.|+.||.+.+.+..++..+|+....... + +..+.+.+.+-+.++-.+...++.....-+... ....++.
T Consensus 136 il~~WL~~~pEDF~~~~~~~~~ls~lL~~g~~~~~--~-e~ra~a~l~r~~~~ri~~~~~~LP~~~~~~~d~~~~~~dv~ 212 (728)
T KOG3629|consen 136 ILMCWLETYPEDFYDSDKDFAMLSSLLDFGGRNKL--T-ELRAKARLQREVFKRIGGMQAALPSLGQYVADMGNKMFDVG 212 (728)
T ss_pred HHHHHHHhChHhhcCccHHHHHHHHHHHhcCCCCc--c-cchhHHHHHHHHHHhccccccCCCccccccCCCCccchhhh
Confidence 88999999999999988877777777777653321 1 123334444444333222222333222111111 2345677
Q ss_pred CCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCC-CCCCCccHHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q psy10818 128 TLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSE-KLTKAPHIVLFTQRFNTMSKLVANEILNRS-NMSQRVHVIEKW 205 (274)
Q Consensus 128 ~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~-~~~~~p~i~~~i~~~n~ls~wV~~~Il~~~-~~~~Ra~~i~~f 205 (274)
.+....||+|||++|.+||+++-|+.|++++|++.+ ..+.+|.|.+-|..||.++.-|.++||..+ .+..||++|+||
T Consensus 213 ~f~~d~iAEQLT~~DA~LFk~l~phqClGcvWs~Rd~~ghl~ptvrATi~QFN~vs~~Vvssilg~~lrp~qRAkiieKW 292 (728)
T KOG3629|consen 213 KFNCDQIAEQLTFWDAALFKELLPHQCLGCVWSKRDTAGHLVPTVRATIEQFNSVSQRVVSSILGPDLRPEQRAKIIEKW 292 (728)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHhcccceeccCCCcccccchHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHH
Confidence 889999999999999999999999999999999964 446899999999999999999999999987 688999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H--hhCcCCcccccCC
Q psy10818 206 IAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y--QVQVDLTFSGLPD 266 (274)
Q Consensus 206 I~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l--l~s~~~nfk~yR~ 266 (274)
|.||.+|+-+.||.++.|++++|++.+|+|||.+|..++......|+ + +++-++|+-+-|+
T Consensus 293 I~iA~E~rllknfssl~avvsalqs~pihrlk~aw~~v~rdsls~f~els~ifse~~n~~~sRe 356 (728)
T KOG3629|consen 293 IDIARECRLLKNFSSLKAVVSALQSEPIHRLKSAWNSVPRDSISQFRELSSIFSEDGNQGNSRE 356 (728)
T ss_pred HHHHHHHHHHhhhccceeeeccccccHHHHHHhhhccCchhHHHHHHHHHhhcccccCCcchhH
Confidence 99999999999999999999999999999999999999999999888 5 8888899998886
No 5
>KOG3542|consensus
Probab=99.95 E-value=1.9e-28 Score=234.77 Aligned_cols=148 Identities=28% Similarity=0.451 Sum_probs=138.0
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCCCCccHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy10818 124 ENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIE 203 (274)
Q Consensus 124 ~~l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p~i~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~ 203 (274)
.++++++..|+|.||++-|+++|++|.|.||++..+.- +....+|++.++-+.||+-..||+++||.+.+.-+|+++|+
T Consensus 862 ~slLqLst~eVAtQLsmrdF~lFrnIEPTEyiDdLFKL-~SKtg~~~LkrFE~l~NqEtfWVAsEIltE~nqlKRmKiIK 940 (1283)
T KOG3542|consen 862 TSLLQLSTQEVATQLSMRDFSLFRNIEPTEYIDDLFKL-DSKTGSPKLKRFEQLFNQETFWVASEILTERNQLKRMKIIK 940 (1283)
T ss_pred HhHhhhHHHHHHHHhhhhhhhhHhcCChHHHHHHHHhh-ccccCCccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999987743 34457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H--hhCcCCcccccCC--------CCCCcc
Q psy10818 204 KWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y--QVQVDLTFSGLPD--------RPAIHY 272 (274)
Q Consensus 204 ~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l--l~s~~~nfk~yR~--------~pciPf 272 (274)
|||+||.+|++++|||+++||++||+.++|.||+.||++||.+|.+.++ + |++|++|...||+ +|.||.
T Consensus 941 hFIKiAlhCReckNFNSMFAIiSGLnla~VaRLr~tWEklpsKYek~lqdlqdlfDPSRNMaKYRn~L~sq~~qPPiiPl 1020 (1283)
T KOG3542|consen 941 HFIKIALHCRECKNFNSMFAIISGLNLAAVARLRSTWEKLPSKYEKMLQDLQDLFDPSRNMAKYRNHLASQAQQPPIIPL 1020 (1283)
T ss_pred HHHHHHHHHHHhcchhhHHHHHhcCchHHHHHHhhhHhhccHHHHHHHHHHHHhhCchhhHHHHHHHHHhhccCCCcccc
Confidence 9999999999999999999999999999999999999999999999988 5 9999999999996 677773
No 6
>KOG3541|consensus
Probab=99.92 E-value=1.3e-24 Score=198.83 Aligned_cols=141 Identities=28% Similarity=0.305 Sum_probs=122.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCC-------------CCCCCccHHHHHHHHHHHHHHHHHHhhCC
Q psy10818 126 IETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSE-------------KLTKAPHIVLFTQRFNTMSKLVANEILNR 192 (274)
Q Consensus 126 l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~-------------~~~~~p~i~~~i~~~n~ls~wV~~~Il~~ 192 (274)
-.+.|+.++|+|||.|+...+..|.++|++.-.-+.+. +-...-.+.+|++|||+++..+++++|..
T Consensus 205 ~~c~dal~laqqlt~Ie~~rls~i~~EelvqiL~sdp~sei~~~~~~~l~~k~~~~ysie~y~~wfn~Lsa~~Atevlk~ 284 (477)
T KOG3541|consen 205 PKCVDALDLAQQLTHIESCRLSLIPHEELVQILDSDPESEILESLVGLLAMKFPYDYSIERYMSWFNHLSALCATEVLKA 284 (477)
T ss_pred hccccHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCcHHHHHHHhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35779999999999999999999999999865433220 00123468999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHHHhhCcCCcccccCC
Q psy10818 193 SNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATLYQVQVDLTFSGLPD 266 (274)
Q Consensus 193 ~~~~~Ra~~i~~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~ll~s~~~nfk~yR~ 266 (274)
...+.|++++++||++|.+|.++||||++|||+.|++-++|.|||+||.+|....++.++..++|.+||-+||-
T Consensus 285 ~kk~~rsamlef~iD~arec~nignfnSmmai~~~lnL~avarlkktw~kv~taK~e~lehqmdps~nflsyr~ 358 (477)
T KOG3541|consen 285 AKKQTRSAMLEFLIDLARECFNIGNFNSMMAIGPGLNLNAVARLKKTWIKVRTAKFEALEHQMDPSSNFLSYRL 358 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999966555555569999999999993
No 7
>KOG2378|consensus
Probab=99.91 E-value=1.7e-24 Score=200.22 Aligned_cols=150 Identities=22% Similarity=0.353 Sum_probs=139.5
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccC-CCCCCCccHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy10818 124 ENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKS-EKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVI 202 (274)
Q Consensus 124 ~~l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~-~~~~~~p~i~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i 202 (274)
..|.-+++.++|.|||++|+++|++|+-.|++.+..+.+ .....+.|+..+..+||.+..||+++|+.+..+.+|++++
T Consensus 331 ~~l~lv~s~dlA~qLt~fdw~Lfnsih~~ElI~y~i~~q~~~~~~tanleLl~~R~neVq~wv~tei~lc~ql~kr~qll 410 (573)
T KOG2378|consen 331 SILHLVSSKDLAHQLTLFDWSLFNSIHENELIHYVIGGQIPCDRNTANLELLLRRFNEVQHWVATEILLCQQLGKRCQLL 410 (573)
T ss_pred ceeeeccHHHHHHHHHHHHHHHHhhhhHhHhhHhhhcccCCCCccchhHHHHHHHHhhchhhhhchhhhhcchhHHHHHH
Confidence 346678999999999999999999999999999988743 3445678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H--hhCcCCcccccCC------CCCCccc
Q psy10818 203 EKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y--QVQVDLTFSGLPD------RPAIHYQ 273 (274)
Q Consensus 203 ~~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l--l~s~~~nfk~yR~------~pciPf~ 273 (274)
++||++|-+|++-.|.++++||+.||++.+|+||..||+++|.+.++.+. + +++|..|++.||. .|.|||.
T Consensus 411 kkfiKiaal~ke~~~l~sffAV~~GL~~~avSrl~~tweklP~k~kk~~s~~enl~dP~~nhr~yR~l~~km~pp~ipf~ 490 (573)
T KOG2378|consen 411 KKFIKIAALCKEGENLNSFFAVVMGLSNRAVSRLDLTWEKLPYKFKKLFSELENLLDPCRNHRTYRLLSSKMSPPYIPFM 490 (573)
T ss_pred HHHHHHHHHHHhhccccchHHHhhcchhHHHHhhhcccccCchHHHhHHHHHHhcCCchhhhHHHHHHHHhcCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999998 4 9999999999995 7899884
No 8
>KOG3417|consensus
Probab=99.72 E-value=4.2e-18 Score=174.97 Aligned_cols=151 Identities=30% Similarity=0.428 Sum_probs=137.4
Q ss_pred ccccCCCCHHHHHHHHHH-HHHHHhccCChhHhhhhhhccCCCCCCCccHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy10818 123 KENIETLSALEIAEQMTY-IDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHV 201 (274)
Q Consensus 123 ~~~l~~~~~~eiA~QLTl-~d~~lf~~I~~~E~l~~~w~k~~~~~~~p~i~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~ 201 (274)
..++....+.++|+|+|. +|...|+.|.+.|++.+.|.+.++...+|++.+++.++|.++.||..+|+..+.++.|+.+
T Consensus 208 ~f~~~~~~~~e~~~~lt~lle~~~~~~iq~~e~~~~~~~~~~~~~~~P~~~~~~~~~~~~s~wv~~~il~~e~l~~r~~~ 287 (840)
T KOG3417|consen 208 IFDFLRLTPRELSEQLTSLLESPDFRKIQPFELLSQSWLKKDKKINSPNIESSTSRFNHLSSWVEQEILNAEQLEERAEV 287 (840)
T ss_pred eeeccccchhhhccccccccccccccccCHHHHHHhhhhhcccccCCCchhhhhhcccchHHHHHHHHhccccHHHHHHh
Confidence 457788999999999996 9999999999999999999998777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH---HhhCcCCcccccCC------C-CCCc
Q psy10818 202 IEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL---YQVQVDLTFSGLPD------R-PAIH 271 (274)
Q Consensus 202 i~~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~---ll~s~~~nfk~yR~------~-pciP 271 (274)
+-++|++|.+..+++|||++|++++|+++++|.||++||+.++.+.+..+. .+....+||++||. . ||||
T Consensus 288 ~~~~L~~a~~~~el~n~~~~~~~v~~~~~s~i~~L~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~yr~~l~~~~~~~~ip 367 (840)
T KOG3417|consen 288 ILHFLEVAAKLSELNNLNSLMEVVSGLQSSPISRLKKTGSYLSSEIKKKLILLTELTSLLDNVQNYRRYLQSCNISPCIP 367 (840)
T ss_pred hHHHHHHhhhhhhccccccHHHHHhccccchhhhhhhhhccccccchhhhhhHHHHhhcchHHHHHHHHhhhcccCcccc
Confidence 999999999999999999999999999999999999999999885433332 35555569999997 3 9999
Q ss_pred cc
Q psy10818 272 YQ 273 (274)
Q Consensus 272 f~ 273 (274)
|.
T Consensus 368 ~~ 369 (840)
T KOG3417|consen 368 IL 369 (840)
T ss_pred cc
Confidence 84
No 9
>KOG3417|consensus
Probab=98.44 E-value=4.3e-07 Score=94.08 Aligned_cols=136 Identities=21% Similarity=0.271 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCCCCccHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy10818 130 SALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVA 209 (274)
Q Consensus 130 ~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p~i~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~~fI~vA 209 (274)
...+++-++++++..++..+...+.. .|.+.....+.++-..+...++..+.|+...|........| +++++
T Consensus 609 ~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~s------~~~~~ 680 (840)
T KOG3417|consen 609 KSAEIACQLTLLDAILTMEICIPRSL--LWAKVQNEEKSKKDLAFTETFNLVSFWSSTIILTQQPAKRS------FIHVA 680 (840)
T ss_pred hHHHHHhhhhhhhhHhhhchhhhhHH--HHhhhhhcccccchHHHHHHHhhhhhhhHHhhhccccccch------hHHHH
Confidence 66778888888888887766555544 34444444567888999999999999999999888776666 99999
Q ss_pred HHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H---hhCcCCcccccCC------CCCCccc
Q psy10818 210 NILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y---QVQVDLTFSGLPD------RPAIHYQ 273 (274)
Q Consensus 210 ~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l---l~s~~~nfk~yR~------~pciPf~ 273 (274)
++|..+.||.++++|.++|.+++++|+..+|.....+....+. + ..++.++|..||. .||+||.
T Consensus 681 ~~~~~~~~~~~l~~~~s~l~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~cvP~~ 754 (840)
T KOG3417|consen 681 KFCKIMKNFRTLMNINSALASSPIHRSTPLWRLEWPKDIREFSALSPLVIDKSNSSTYRRALLSVPEPPCVPFL 754 (840)
T ss_pred hhhhhhCchhhhhHHHHHhccchhhhcchhhcccchhhHHHhhccccchhcccccHHHHHHHhcCCCCCCcCce
Confidence 9999999999999999999999999999999999887766665 3 4555555555553 6999996
No 10
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=98.35 E-value=1.9e-06 Score=68.73 Aligned_cols=43 Identities=35% Similarity=0.520 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHhcCccCCcCcHHHHHHHHHHHHHHhcC
Q psy10818 39 STARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCT 81 (274)
Q Consensus 39 ~~~i~~rVl~vl~~Wi~~~~~DF~~~~~L~~~l~~Fl~~i~~~ 81 (274)
...+|.||+++|+.|+++||+||.+++.+...+.+|++.+...
T Consensus 68 ~~~~~~rv~~~l~~Wv~~~~~dF~~~~~l~~~l~~f~~~~~~~ 110 (127)
T smart00229 68 PLRVKNRVLNILRHWVENYWQDFEDDPKLILRLLEFLDLVDQE 110 (127)
T ss_pred HHHHHHHHHHHHHHHHHHCCcccccCHHHHHHHHHHHHHHhhC
Confidence 3568999999999999999999999999999999999987654
No 11
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=98.14 E-value=1.6e-05 Score=62.57 Aligned_cols=43 Identities=37% Similarity=0.614 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHhcCccCCcCcHHHHHHHHHHHHHHhcC
Q psy10818 39 STARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCT 81 (274)
Q Consensus 39 ~~~i~~rVl~vl~~Wi~~~~~DF~~~~~L~~~l~~Fl~~i~~~ 81 (274)
..++|.||+++|+.|+++||+||.+|+.+...+.+|++.+...
T Consensus 63 ~~~~~~~v~~~l~~Wv~~~~~df~~d~~l~~~l~~F~~~~~~~ 105 (122)
T cd06224 63 SKPIRLRVLNVLRTWVENYPYDFFDDEELLELLEEFLNRLVQE 105 (122)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHccc
Confidence 3678999999999999999999988889999999999988754
No 12
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=98.00 E-value=6.8e-06 Score=63.25 Aligned_cols=35 Identities=37% Similarity=0.560 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHhcCccCCcCcHHHHHHHHHH
Q psy10818 40 TARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEF 74 (274)
Q Consensus 40 ~~i~~rVl~vl~~Wi~~~~~DF~~~~~L~~~l~~F 74 (274)
.++|.||+++|+.|+++||.||.+++.+.+.+.+|
T Consensus 70 ~~i~~rv~~~l~~Wi~~~~~df~~~~~l~~~l~~F 104 (104)
T PF00618_consen 70 EPIRLRVLNVLKYWIENYPDDFRDDPELLEKLKQF 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHChHhhCCCHHHHHHHHcC
Confidence 56899999999999999999999998888888776
No 13
>KOG3542|consensus
Probab=80.68 E-value=0.9 Score=45.87 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=34.0
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHhcCccCCcCcHHHHHHHHHHHHHHh
Q psy10818 28 EVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIV 79 (274)
Q Consensus 28 ~~~~~~k~~~i~~~i~~rVl~vl~~Wi~~~~~DF~~~~~L~~~l~~Fl~~i~ 79 (274)
.+|....- .|-+|-.++-.|+.+||.||+.|+.+-..|.+|-..+.
T Consensus 470 leWF~d~s------lRDKVtRlVLLWVNNHFNDFEgdpaMtrfLEeFE~nLE 515 (1283)
T KOG3542|consen 470 LEWFADSS------LRDKVTRLVLLWVNNHFNDFEGDPAMTRFLEEFEGNLE 515 (1283)
T ss_pred HHHhccch------HhhhhheeeeeeeccccccccCCHHHHHHHHHHhhhhh
Confidence 34666533 47778888899999999999999987665666655444
No 14
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=51.49 E-value=52 Score=22.76 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHH--hcCChHHHHH
Q psy10818 170 HIVLFTQRFNTMSKLVANEILNR---SNMSQRVHVIEKWIAVANILR--FLNNFNGVLT 223 (274)
Q Consensus 170 ~i~~~i~~~n~ls~wV~~~Il~~---~~~~~Ra~~i~~fI~vA~~c~--~l~Nf~s~~a 223 (274)
.+...+..||.=-+|=+.++|-+ .....+...+.-+|++|--+. ..||..+..-
T Consensus 2 ~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~ 60 (62)
T PF03745_consen 2 ALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARR 60 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHH
T ss_pred HHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 46678888999999999998864 222348899999999998874 6888877653
No 15
>KOG3541|consensus
Probab=48.04 E-value=10 Score=36.35 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHH
Q psy10818 170 HIVLFTQRFNTMSKLVAN---EILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLK 237 (274)
Q Consensus 170 ~i~~~i~~~n~ls~wV~~---~Il~~~~~~~Ra~~i~~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk 237 (274)
++..+...+......+.. .+++.-.++.|..-+..|-.|+..|.+.+|+++..+|...|...++.|++
T Consensus 385 ~Lkdl~~i~~~h~~~l~Nghinf~k~~~i~~qlr~v~~W~~v~c~fek~p~v~sylliaevlse~alm~~s 455 (477)
T KOG3541|consen 385 FLKDLLDISARHRLFLPNGHINFLKFVGIEGQLRTVELWSGVACPFEKVPNVNSYLLIAEVLSEPALMRAS 455 (477)
T ss_pred hHHHHHHHHhhhcccCCCchhHHHHHHhHHhhhhhhhhhhcccchHhhCchHHhHHhhhhhcccchhhhhe
Confidence 456677777777777766 66666678899999999999999999999999999999999999998876
No 16
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=25.11 E-value=1.5e+02 Score=21.80 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchH
Q psy10818 199 VHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVR 248 (274)
Q Consensus 199 a~~i~~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k 248 (274)
+.++..++++..++..-++-..++.++.+|.. |.|-.-+...++++.|
T Consensus 46 ~~~L~~il~~l~~~~~~~~~~~i~~~L~~L~~--~~RF~l~~~fl~~~eK 93 (94)
T PF13877_consen 46 PEFLSEILEALNEHFIPEDPEFIFEILEALSK--VKRFDLAVMFLSSSEK 93 (94)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHhcC--CCCHHHHHHhcCHhhC
Confidence 35666777777776665555677777777765 4455555555555443
No 17
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.98 E-value=1.2e+02 Score=18.46 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=9.0
Q ss_pred HHHHHhcCccCCc
Q psy10818 50 LQHWISKHTQDFI 62 (274)
Q Consensus 50 l~~Wi~~~~~DF~ 62 (274)
|+.|++.|+..+.
T Consensus 9 L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 9 LKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHcCCCCC
Confidence 6777777776554
No 18
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=21.76 E-value=1.3e+02 Score=20.85 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHhcCcc
Q psy10818 40 TARTMQVLNVLQHWISKHTQ 59 (274)
Q Consensus 40 ~~i~~rVl~vl~~Wi~~~~~ 59 (274)
++-|.+|+.+|+.+++++.+
T Consensus 5 T~rQ~~vL~~I~~~~~~~G~ 24 (65)
T PF01726_consen 5 TERQKEVLEFIREYIEENGY 24 (65)
T ss_dssp -HHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHcCC
Confidence 56789999999999998885
Done!