Query psy10818
Match_columns 274
No_of_seqs 166 out of 1125
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 19:17:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ii0_A SOS-1, SON of sevenless 100.0 1E-47 3.4E-52 371.1 16.9 238 28-273 114-371 (490)
2 4f7z_A RAP guanine nucleotide 100.0 2.2E-45 7.7E-50 380.6 19.3 150 124-273 754-912 (999)
3 3ksy_A SOS-1, SON of sevenless 100.0 3.7E-45 1.3E-49 380.2 14.9 240 27-273 672-930 (1049)
4 3qxl_A RAS-specific guanine nu 100.0 3.2E-42 1.1E-46 309.3 10.1 151 123-273 25-185 (271)
5 2ije_S Guanine nucleotide-rele 100.0 7E-42 2.4E-46 302.2 9.0 145 129-273 4-157 (240)
6 3cf6_E RAP guanine nucleotide 100.0 6.9E-41 2.4E-45 335.2 13.3 150 124-273 449-607 (694)
7 3t6a_A Breast cancer anti-estr 99.8 1.2E-20 4E-25 169.9 9.7 130 123-252 41-181 (333)
8 3t6g_A SH2 domain-containing p 99.8 1E-20 3.6E-25 170.1 9.3 128 123-250 42-177 (331)
9 2voi_B BH3-interacting domain 39.8 23 0.0008 20.8 2.5 21 132-152 9-29 (34)
10 2kbw_B BH3-interacting domain 38.9 27 0.00091 20.7 2.7 21 132-152 13-33 (35)
No 1
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=100.00 E-value=1e-47 Score=371.14 Aligned_cols=238 Identities=26% Similarity=0.472 Sum_probs=193.7
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHhcCccCCcCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhhhcc-
Q psy10818 28 EVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKH- 106 (274)
Q Consensus 28 ~~~~~~k~~~i~~~i~~rVl~vl~~Wi~~~~~DF~~~~~L~~~l~~Fl~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~- 106 (274)
+..+.+|+. ..++|+||++||+.||++||+||..|+.+...+..|++.+... .+.+.+.++.+.+.++....
T Consensus 114 ~~~~~~~~~--~~~iq~rV~~vl~~Wv~~~~~DF~~d~~ll~~L~~F~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~ 186 (490)
T 2ii0_A 114 ELKRFRKEY--IQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGK-----AMKKWVESITKIIQRKKIARD 186 (490)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHTTCCCT-----TTHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhh--hhhHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHhccch-----hHHHHHHHHHHHHHHHHhccc
Confidence 344455553 3689999999999999999999998888888999999875432 13455666666665443211
Q ss_pred ---ccccccccCCCCCCC---------CccccCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCCCCccHHHH
Q psy10818 107 ---ETNLQDLLAPPPQVA---------NKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLF 174 (274)
Q Consensus 107 ---~~~~~~~~~~pp~~~---------~~~~l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p~i~~~ 174 (274)
...+. ...+||.+. ...++++++|.|||+|||++|+++|++|+|.||+++.|++.++...+||+.++
T Consensus 187 ~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~ll~~~p~elA~QLTlid~~lf~~I~~~E~l~~~w~~~~~~~~~pnl~~~ 265 (490)
T 2ii0_A 187 NGPGHNIT-FQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKM 265 (490)
T ss_dssp ---------CCSCCCCCCCCSSCTTCGGGCCTTTSCHHHHHHHHHHHHHHHHHHCCGGGTGGGGGGSTTHHHHCHHHHHH
T ss_pred CCCCcccc-cCCCCCccccccCCCCCcccchhhccCHHHHHHHHHHHHHHHHHCCCHHHHHHHHhcCCCcCCCCccHHHH
Confidence 11111 111233221 23568899999999999999999999999999999999987655678999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H
Q psy10818 175 TQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y 253 (274)
Q Consensus 175 i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l 253 (274)
+.+||.+++||+++||.++++++||++|++||+||.+|+++|||||+|||++||++++|+||++||+.|+++.++.++ +
T Consensus 266 i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~kfI~iA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l 345 (490)
T 2ii0_A 266 IRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEA 345 (490)
T ss_dssp HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHHSCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccchhhhHHHHHHHCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999888 4
Q ss_pred hhCcCCcccccCC------CCCCccc
Q psy10818 254 QVQVDLTFSGLPD------RPAIHYQ 273 (274)
Q Consensus 254 l~s~~~nfk~yR~------~pciPf~ 273 (274)
.--+++||++||+ .|||||+
T Consensus 346 ~~l~~~n~~~yR~~l~~~~~p~IPfl 371 (490)
T 2ii0_A 346 HELSEDHYKKYLAKLRSINPPCVPFF 371 (490)
T ss_dssp HHHHHHHHHHHHHHHHTCCSSCBCCC
T ss_pred HHhchHHHHHHHHHHhccCCCcccCc
Confidence 1114689999996 7999996
No 2
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=100.00 E-value=2.2e-45 Score=380.55 Aligned_cols=150 Identities=23% Similarity=0.390 Sum_probs=144.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCCCCccHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy10818 124 ENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIE 203 (274)
Q Consensus 124 ~~l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p~i~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~ 203 (274)
..|++++|.|||+|||++|+++|++|+|.||+++.|++.++...+|||.+++++||.+++||+++||.++++++||++|+
T Consensus 754 ~~~~~~~~~e~A~qlt~~~~~~f~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~wv~~~il~~~~~~~R~~~~~ 833 (999)
T 4f7z_A 754 GTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLK 833 (999)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHCHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred cchhcCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45889999999999999999999999999999999998777778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H--hhCcCCcccccCC------CCCCccc
Q psy10818 204 KWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y--QVQVDLTFSGLPD------RPAIHYQ 273 (274)
Q Consensus 204 ~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l--l~s~~~nfk~yR~------~pciPf~ 273 (274)
+||+||.+|+++|||||+|||++||++++|+||++||+.||+++++.|+ + |+++++||++||+ .|||||+
T Consensus 834 ~~i~ia~~~~~l~Nf~~~~ai~~~l~~~~i~RL~~tw~~~~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~p~iP~~ 912 (999)
T 4f7z_A 834 KFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFM 912 (999)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHTTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCSSCBCCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHcCCchhhhHHHHHHHCCHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCeecee
Confidence 9999999999999999999999999999999999999999999999999 5 9999999999996 7999995
No 3
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=3.7e-45 Score=380.21 Aligned_cols=240 Identities=25% Similarity=0.465 Sum_probs=196.1
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHhcCccCCcCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhhhcc
Q psy10818 27 EEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKACTKH 106 (274)
Q Consensus 27 ~~~~~~~k~~~i~~~i~~rVl~vl~~Wi~~~~~DF~~~~~L~~~l~~Fl~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 106 (274)
++..+.+++. .+|+|+||++||+.|+++||+||..|+.|...+..|++.+... ...+.+.++.+.+.++....
T Consensus 672 ~~~~~~~~~~--~~~ir~rV~~vLk~Wle~~~~DF~~d~~Ll~~L~~Fl~~~~~~-----~~~~~~~~l~~~l~~~~~~~ 744 (1049)
T 3ksy_A 672 AELKRFRKEY--IQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGK-----AMKKWVESITKIIQRKKIAR 744 (1049)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHCCCT-----THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--ccchhhhHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHhhcc
Confidence 3333444442 3799999999999999999999998889999999999986532 13455667777665443221
Q ss_pred c--cccc-cccCCCCCC----C-----CccccCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCCCCccHHHH
Q psy10818 107 E--TNLQ-DLLAPPPQV----A-----NKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLF 174 (274)
Q Consensus 107 ~--~~~~-~~~~~pp~~----~-----~~~~l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p~i~~~ 174 (274)
. .... ..-.+||.+ + .+.+|++++|.|||+|||++|+++|++|.|.||+++.|++.++...+||+.++
T Consensus 745 ~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~ll~~~~~elA~QLTlid~~lf~~I~p~E~l~~~w~~~~~~~~~pn~~~~ 824 (1049)
T 3ksy_A 745 DNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKM 824 (1049)
T ss_dssp CC---CCCCCCSCCCCCCCCSSCTTCTTTCCTTTSCHHHHHHHHHHHHHHHHHHCCGGGGSSSTTTSSCHHHHCHHHHHH
T ss_pred ccCccccccCCCCCCchhhcccCccccCCcccccCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCCcccCCchHHHH
Confidence 1 0011 111122222 1 34578899999999999999999999999999999999987665678999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H
Q psy10818 175 TQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y 253 (274)
Q Consensus 175 i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l 253 (274)
+.+||.+++||+++||.++++++||++|++||+||.+|+++|||||+|||++||++++|+||++||+.||++.++.|+ +
T Consensus 825 i~~~n~~s~wV~~~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l 904 (1049)
T 3ksy_A 825 IRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEA 904 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSHHHHTCTTTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcccchhHhHHHHHHHCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred hhCcCCcccccCC------CCCCccc
Q psy10818 254 QVQVDLTFSGLPD------RPAIHYQ 273 (274)
Q Consensus 254 l~s~~~nfk~yR~------~pciPf~ 273 (274)
.--+++||++||+ .|||||+
T Consensus 905 ~~l~~~n~~~yR~~l~~~~~p~IPfl 930 (1049)
T 3ksy_A 905 HELSEDHYKKYLAKLRSINPPCVPFF 930 (1049)
T ss_dssp HTTTHHHHHHHHHHHTTCCSSCCCCT
T ss_pred HhhchHHHHHHHHHHhhCCCCcccee
Confidence 1115689999996 6999996
No 4
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=100.00 E-value=3.2e-42 Score=309.31 Aligned_cols=151 Identities=29% Similarity=0.524 Sum_probs=143.4
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCCCCccHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy10818 123 KENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVI 202 (274)
Q Consensus 123 ~~~l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p~i~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i 202 (274)
..++++++|.|||+|||++|+++|++|+|.||+++.|+++++...+||+.+++++||.+++||+++||.++++++|+++|
T Consensus 25 ~fdil~~~p~elA~QLTlid~~lF~~I~p~E~l~~~w~k~~~~~~~pnl~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i 104 (271)
T 3qxl_A 25 VFDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEIL 104 (271)
T ss_dssp -CCGGGSCHHHHHHHHHHHHHHHHHTCCHHHHHHTCTTSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhccCCcCCCCCcHHHHHHHHhHHHHHHHHHhcccCCHHHHHHHH
Confidence 46789999999999999999999999999999999998866555789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H--hhCcCCcccccCC-------CCCCcc
Q psy10818 203 EKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y--QVQVDLTFSGLPD-------RPAIHY 272 (274)
Q Consensus 203 ~~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l--l~s~~~nfk~yR~-------~pciPf 272 (274)
++||+||.+|+++|||||+|||++||++++|+||++||+.||++.++.|+ + ++++++||++||+ .|||||
T Consensus 105 ~kfI~IA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~l~~k~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~~p~IPf 184 (271)
T 3qxl_A 105 SHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPY 184 (271)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCCBCC
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHcccchHHHHHHHHHHCCHHHHHHHHHHHHHcCcchhHHHHHHHHHhcCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999998 5 9999999999995 599999
Q ss_pred c
Q psy10818 273 Q 273 (274)
Q Consensus 273 ~ 273 (274)
+
T Consensus 185 l 185 (271)
T 3qxl_A 185 L 185 (271)
T ss_dssp H
T ss_pred h
Confidence 5
No 5
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=100.00 E-value=7e-42 Score=302.23 Aligned_cols=145 Identities=48% Similarity=0.756 Sum_probs=139.1
Q ss_pred CCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCCCCccHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy10818 129 LSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAV 208 (274)
Q Consensus 129 ~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p~i~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~~fI~v 208 (274)
++|.|||+|||++|+++|++|+|.||+++.|++.++...+||+.+++++||.++.||+++||.++++++|+++|++||+|
T Consensus 4 ~~p~eiA~QLTl~d~~lf~~I~~~E~l~~~w~~~~~~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~i 83 (240)
T 2ije_S 4 GSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVAV 83 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGGGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHhhhHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999876656789999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H--hhCcCCcccccCC------CCCCccc
Q psy10818 209 ANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y--QVQVDLTFSGLPD------RPAIHYQ 273 (274)
Q Consensus 209 A~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l--l~s~~~nfk~yR~------~pciPf~ 273 (274)
|.+|+++|||||+|||++||++++|+||++||+.||+++++.|+ + ++++++||++||+ .|||||+
T Consensus 84 A~~~~~l~Nfns~~aI~~gL~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPfl 157 (240)
T 2ije_S 84 ADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYL 157 (240)
T ss_dssp HHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCH
T ss_pred HHHHHhcCCHhHHHHHHHHhccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhcCCCccCcc
Confidence 99999999999999999999999999999999999999999998 5 9999999999996 6999995
No 6
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=100.00 E-value=6.9e-41 Score=335.23 Aligned_cols=150 Identities=23% Similarity=0.390 Sum_probs=143.8
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCCCCccHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy10818 124 ENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIE 203 (274)
Q Consensus 124 ~~l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~~~p~i~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~~i~ 203 (274)
.+|.+++|.|||+|||++|+++|++|+|.||+++.|++.+....+||+.+++++||.+++||+++||.++++++|+++|+
T Consensus 449 ~~l~~~~~~elA~QLTl~d~~lf~~I~~~E~l~~~~~~~~~~~~~pni~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~ 528 (694)
T 3cf6_E 449 GTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLK 528 (694)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHCGGGTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CchhcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45889999999999999999999999999999999998766678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHHHH-H--hhCcCCcccccCC------CCCCccc
Q psy10818 204 KWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATL-Y--QVQVDLTFSGLPD------RPAIHYQ 273 (274)
Q Consensus 204 ~fI~vA~~c~~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~~~-l--l~s~~~nfk~yR~------~pciPf~ 273 (274)
+||+||.+|+++|||||+|||++||++++|+||++||+.||+++++.|+ + ++++++||++||+ .|||||+
T Consensus 529 ~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~p~IPfl 607 (694)
T 3cf6_E 529 KFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFM 607 (694)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSCSSCBCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCcchhhhHHHHHHCCHHHHHHHHHHHHHhCccccHHHHHHHHHhcCCCCcccH
Confidence 9999999999999999999999999999999999999999999999998 5 9999999999995 7999995
No 7
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=169.87 Aligned_cols=130 Identities=22% Similarity=0.286 Sum_probs=108.3
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCC--CCcc----HHHHHHHHHHHHHHHHHHhhCCCC-H
Q psy10818 123 KENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLT--KAPH----IVLFTQRFNTMSKLVANEILNRSN-M 195 (274)
Q Consensus 123 ~~~l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~--~~p~----i~~~i~~~n~ls~wV~~~Il~~~~-~ 195 (274)
+..|.+.||.++|+|||.+|+++++.....+-....++...+-+ .-|. -.+++++||.+++||+.+||.|.. .
T Consensus 41 k~lL~~~~~~~lA~hlt~~D~~lar~l~~t~~~~~~mgv~sglELitlPhG~qlRldlleR~~~l~~wva~~IL~C~~~~ 120 (333)
T 3t6a_A 41 KELFTNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHGHQLRLDIIERHNTMAIGIAVDILGCTGTL 120 (333)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTTSSCCCHHHHHHHSSSCHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTSCCSH
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHhcCCcHHHHhhhcCCCcceEEEeeccchhhhHHHHHhcccHHHHHHHHHhCCCch
Confidence 44578899999999999999999988666554444443221100 1122 257899999999999999999874 8
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHH---HHH
Q psy10818 196 SQRVHVIEKWIAVANILR-FLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRP---ATL 252 (274)
Q Consensus 196 ~~Ra~~i~~fI~vA~~c~-~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~---~~~ 252 (274)
++|+.++++||+||.+|+ .+||+++++||+.||+++.|.||++||+.|++++++ .|+
T Consensus 121 ~eR~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVSRL~~TW~~Lr~k~te~ai~yE 181 (333)
T 3t6a_A 121 EDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRHQYTQTAILYE 181 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHHTCHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHHHHHHHHHHhhHHhhHHHHHHH
Confidence 899999999999999999 899999999999999999999999999999999888 555
No 8
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=170.09 Aligned_cols=128 Identities=22% Similarity=0.330 Sum_probs=108.4
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhccCChhHhhhhhhccCCCCC--CCcc----HHHHHHHHHHHHHHHHHHhhCCC-CH
Q psy10818 123 KENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLT--KAPH----IVLFTQRFNTMSKLVANEILNRS-NM 195 (274)
Q Consensus 123 ~~~l~~~~~~eiA~QLTl~d~~lf~~I~~~E~l~~~w~k~~~~~--~~p~----i~~~i~~~n~ls~wV~~~Il~~~-~~ 195 (274)
+..|.+.||.++|+|||.+|+++++.....+-....++...+-+ .-|. -.++++++|.+.+||+.+||.|. +.
T Consensus 42 k~lL~~~~~~~lA~hlt~~D~~l~~~l~vt~~~~~~mgv~sglELitlPhG~qlRldlleR~~~l~~~va~~IL~c~g~~ 121 (331)
T 3t6g_A 42 KELLAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGSTGSA 121 (331)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHTTSSSCCHHHHHHHSSSCHHHHTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTCCSCH
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHhcCCCHHHHhhhcCCCcceeEEecccchhhHHHHHHhcchHHHHHHHHhcCCCCH
Confidence 44578999999999999999999998766555544443221110 1122 25789999999999999999997 89
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHhcCcchhhhHHHHHHhhccchHHH
Q psy10818 196 SQRVHVIEKWIAVANILR-FLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPA 250 (274)
Q Consensus 196 ~~Ra~~i~~fI~vA~~c~-~l~Nf~s~~aI~saL~~~~I~RLk~TW~~l~~~~k~~ 250 (274)
.+|+.++++||+||.+|+ .++|+++++||+.||+++.|.||++||+.+++++++.
T Consensus 122 ~~Ra~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqVsRLe~TW~~Lr~k~te~ 177 (331)
T 3t6g_A 122 EERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTEG 177 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHHHTCHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHHHHHHHHHHHhhhhhhHH
Confidence 999999999999999999 9999999999999999999999999999999998876
No 9
>2voi_B BH3-interacting domain death agonist P13; protein-protein complex, BCL-2, membrane, apoptosis, Pro-surviVal, mitochondrion, phosphoprotein; 2.1A {Mus musculus}
Probab=39.84 E-value=23 Score=20.83 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhccCChh
Q psy10818 132 LEIAEQMTYIDYHIFKSIRSE 152 (274)
Q Consensus 132 ~eiA~QLTl~d~~lf~~I~~~ 152 (274)
..||+||.-+--.++.+|+|.
T Consensus 9 ~~ia~~la~igd~~d~~i~p~ 29 (34)
T 2voi_B 9 HNIARHLAQIGDEMDHNIQPT 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHccchhhhhhcccCcc
Confidence 569999999999999999993
No 10
>2kbw_B BH3-interacting domain death agonist; MCL-1, BID_BH3, complex, alternative splicing, apoptosis, CY developmental protein, differentiation, membrane; NMR {Homo sapiens}
Probab=38.88 E-value=27 Score=20.72 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhccCChh
Q psy10818 132 LEIAEQMTYIDYHIFKSIRSE 152 (274)
Q Consensus 132 ~eiA~QLTl~d~~lf~~I~~~ 152 (274)
..||+||.-+--.++.+|+|.
T Consensus 13 ~~ia~qla~igd~~d~~i~p~ 33 (35)
T 2kbw_B 13 RNIARHLAQVGDSMDRSIPPG 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHccchhhhhhcccCCc
Confidence 569999999999999999983
Done!