RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10818
(274 letters)
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 199 bits (507), Expect = 2e-58
Identities = 54/242 (22%), Positives = 108/242 (44%), Gaps = 8/242 (3%)
Query: 14 ASESSNPRDISPVEEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLE 73
A + P+ + ++ + + ++VLNV +HW+ H DF +D L E
Sbjct: 658 ADRIAIENGDQPLSAELKRFRKEYIQPVQ-LRVLNVCRHWVEHHFYDFERDAYLLQRMEE 716
Query: 74 FLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDLLAPP-------PQVANKENI 126
F+ + E + + + P P ++
Sbjct: 717 FIGTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDL 776
Query: 127 ETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVA 186
TL +EIA Q+T ++ ++++++ E G W K +K +P+++ + ++
Sbjct: 777 LTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFE 836
Query: 187 NEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKT 246
I+ N+ +RV V+ + I + + + LNNFNGVL ++SAMN+S V+RL T++++
Sbjct: 837 KCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSR 896
Query: 247 VR 248
+
Sbjct: 897 QK 898
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
1nvw_S* 1nvx_S* 1bkd_S
Length = 490
Score = 189 bits (481), Expect = 4e-57
Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 7/224 (3%)
Query: 32 KRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKA 91
KR ++VLNV +HW+ H DF +D L EF+ + E
Sbjct: 116 KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESIT 175
Query: 92 ATQLTQMLTK-------ACTKHETNLQDLLAPPPQVANKENIETLSALEIAEQMTYIDYH 144
+ + + + + P ++ TL +EIA Q+T ++
Sbjct: 176 KIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESD 235
Query: 145 IFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEK 204
++++++ E G W K +K +P+++ + ++ I+ N+ +RV V+ +
Sbjct: 236 LYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSR 295
Query: 205 WIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVR 248
I + + + LNNFNGVL ++SAMN+S V+RL T++++ +
Sbjct: 296 IIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQK 339
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS
guanine nucleotide releasing FACT specific nucleotide
exchange factor; 2.20A {Mus musculus}
Length = 240
Score = 170 bits (434), Expect = 8e-53
Identities = 64/120 (53%), Positives = 89/120 (74%)
Query: 129 LSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANE 188
SALEIAEQ+T +D+ +FKSI EEFFGQ W+K+EK + P+I+ T+ FN +S +A+E
Sbjct: 4 GSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASE 63
Query: 189 ILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVR 248
I+ ++S R IEKW+AVA+I R L+N+N VL I S++N S++FRLKKTW KVSK +
Sbjct: 64 IIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTK 123
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain
homology, guanine-nucleotide exchange factor, S GTPase
RAL subfamily; 2.24A {Homo sapiens}
Length = 271
Score = 170 bits (432), Expect = 4e-52
Identities = 43/147 (29%), Positives = 78/147 (53%)
Query: 102 ACTKHETNLQDLLAPPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLK 161
+ A A ++ ++ E A Q+T +D +FK+I+ EE W K
Sbjct: 4 GSSDSLEGQSCDYASKSYDAVVFDVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSK 63
Query: 162 SEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGV 221
EK + AP++V FT+RFN +S V EIL + R ++ ++ +A L LNN + +
Sbjct: 64 KEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSL 123
Query: 222 LTIISAMNNSSVFRLKKTWDKVSKTVR 248
++++SA+ ++ +FRL KTW +++ +
Sbjct: 124 MSVVSALQSAPIFRLTKTWALLNRKDK 150
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 165 bits (418), Expect = 2e-46
Identities = 34/142 (23%), Positives = 65/142 (45%)
Query: 107 ETNLQDLLAPPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLT 166
++ P E +S+ ++A QMT D+ +F + E + +
Sbjct: 737 DSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKK 796
Query: 167 KAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIIS 226
++ LF +RFN + V E+ S +S+RV +++K+I +A + N N I+
Sbjct: 797 TTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVM 856
Query: 227 AMNNSSVFRLKKTWDKVSKTVR 248
++N +V RL TW+K+ +
Sbjct: 857 GLSNVAVSRLALTWEKLPSKFK 878
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 162 bits (411), Expect = 7e-46
Identities = 34/142 (23%), Positives = 65/142 (45%)
Query: 107 ETNLQDLLAPPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLT 166
++ P E +S+ ++A QMT D+ +F + E + +
Sbjct: 432 DSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKK 491
Query: 167 KAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIIS 226
++ LF +RFN + V E+ S +S+RV +++K+I +A + N N I+
Sbjct: 492 TTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVM 551
Query: 227 AMNNSSVFRLKKTWDKVSKTVR 248
++N +V RL TW+K+ +
Sbjct: 552 GLSNVAVSRLALTWEKLPSKFK 573
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology
domain, GTPase exchange factor, signaling Pro; HET: POG;
2.40A {Homo sapiens}
Length = 333
Score = 105 bits (262), Expect = 1e-26
Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 8/143 (5%)
Query: 114 LAPPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKA----- 168
L KE IA+ + +D + + + E + S L
Sbjct: 32 LETALLKRAKELFTNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHG 91
Query: 169 -PHIVLFTQRFNTMSKLVANEILNRS-NMSQRVHVIEKWIAVANILRF-LNNFNGVLTII 225
+ +R NTM+ +A +IL + + R + K I VA L+ + + ++
Sbjct: 92 HQLRLDIIERHNTMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALM 151
Query: 226 SAMNNSSVFRLKKTWDKVSKTVR 248
A+ + RL+KTW +
Sbjct: 152 KALEMPQITRLEKTWTALRHQYT 174
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase
exchange factor, focal-adhesio targeting domain,
signaling protein; 2.50A {Homo sapiens}
Length = 331
Score = 95.2 bits (236), Expect = 5e-23
Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 123 KENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEK--LTKAPHI----VLFTQ 176
KE + + A +A +T +D + + + + L PH + +
Sbjct: 42 KELLAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLE 101
Query: 177 RFNTMSKLVANEILNRS-NMSQRVHVIEKWIAVANILRF-LNNFNGVLTIISAMNNSSVF 234
RF+TMS ++A +IL + + +R ++ K I +A LR + N ++ A++ + +
Sbjct: 102 RFHTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQIS 161
Query: 235 RLKKTWDKVSK 245
RL++TW + +
Sbjct: 162 RLEQTWVTLRQ 172
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 7e-08
Identities = 29/238 (12%), Positives = 78/238 (32%), Gaps = 59/238 (24%)
Query: 48 NVLQHWISKHTQDF----IQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQMLTKAC 103
++L + +F +QD ++ E ++ I+ + + A + ++
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD-------AVSGTLRLFWTLL 72
Query: 104 TKHETNLQ----DLLAP--------------PPQVANKENIETLSALEIAEQMTYIDYHI 145
+K E +Q ++L P + + IE L Q+ + Y++
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNV 131
Query: 146 FKSIRSEEFFG-QAWLKSEKLTKAPHIVLFTQRFNTM-----SKLVANEILN---RSNMS 196
R + + + L +L A ++++ + + + + L+ + M
Sbjct: 132 ---SRLQPYLKLRQALL--ELRPAKNVLID-----GVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 197 QRVHVIEKWIAVAN------ILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVR 248
++ W+ + N +L L + + +K + +R
Sbjct: 182 FKIF----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Score = 42.1 bits (98), Expect = 1e-04
Identities = 37/255 (14%), Positives = 77/255 (30%), Gaps = 84/255 (32%)
Query: 37 VLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEEIV-----CTPNLLPAEYKA 91
+L T R QV + L + T D +T + ++ ++ C P LP E
Sbjct: 268 ILLTTRFKQVTDFLS---AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 92 ATQLTQMLTKACTKHETNLQDLLAPPPQVANKENIET-----LSALEIAE-QMTYIDYHI 145
+ + D V N + + T L+ LE AE + + +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNW---KHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 146 FKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKW 205
F P I+L ++ W
Sbjct: 381 F----------------PPSAHIPTILL--------------SLI--------------W 396
Query: 206 IAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSKTVRPATLYQVQVDLTFSGLP 265
V + V+ +++ ++ S+ ++K + + ++ + ++L L
Sbjct: 397 FDV--------IKSDVMVVVNKLHKYSL--VEKQPKESTI-----SIPSIYLELKVK-LE 440
Query: 266 DRPAIH------YQV 274
+ A+H Y +
Sbjct: 441 NEYALHRSIVDHYNI 455
Score = 37.1 bits (85), Expect = 0.006
Identities = 40/285 (14%), Positives = 80/285 (28%), Gaps = 99/285 (34%)
Query: 12 IAASESSNPRDISPVEEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELR--Y 69
IA S + V + +++ ++ LNVL+ E R +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESS-----LNVLE------------PAEYRKMF 375
Query: 70 MTLE-FLEEIVCTPNLL------PAEYKAATQLTQMLTKACTKHETN-----LQDLLAPP 117
L F LL + + ++ + + + + +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI---- 431
Query: 118 PQVANKENIETLSAL--EIAEQ---------------------MTYIDYHIFKSIRSEEF 154
+ K +E AL I + ++I +H+ E
Sbjct: 432 -YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 155 --FGQ-----AWLKSEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMSQRVHVIEKWIA 207
F +L+ K+ R ++ + + IL N Q++ + +I
Sbjct: 491 TLFRMVFLDFRFLEQ-KI-----------RHDSTAWNASGSIL---NTLQQLKFYKPYIC 535
Query: 208 ---------VANILRFLNNFNGVLTI--------ISAMN-NSSVF 234
V IL FL L I+ M + ++F
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 6e-04
Identities = 41/280 (14%), Positives = 85/280 (30%), Gaps = 80/280 (28%)
Query: 24 SPVEEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLEFLEE----IV 79
S VE + + + VL+ L + +++ ++ + + L+E +V
Sbjct: 70 SLVEPSKVGQFDQVLNL--------CLTEF----ENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 80 CTPNLLPAEYKAATQLTQMLTKACTKHETNLQDLLAPPPQVANKENIETLSALEIAE--- 136
T L+ A + K + L + + N + +A
Sbjct: 118 KTKELIKNYITARIMAKRPFDKK---SNS---ALF----RAVGEGNAQL-----VAIFGG 162
Query: 137 Q---MTYID-----YHIFKSIRSEEFFGQAWLKSEKLTKAPH--IVLFTQRFNTMSKLV- 185
Q Y + Y + + + + +L + +FTQ N + L
Sbjct: 163 QGNTDDYFEELRDLYQTYHVL-VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 186 -----ANEILNRSNMS-------QRVHVIEKWIAVANIL-----RFLNNFNGVLT----I 224
+ L +S Q H ++ A +L + G +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAH----YVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 225 ISAMNNSSVFRLKKTWDKVSKTVRPATLYQVQVDLTFSGL 264
++A +W+ +VR A + V L F G+
Sbjct: 278 VTA----VAIAETDSWESFFVSVRKA----ITV-LFFIGV 308
Score = 35.4 bits (81), Expect = 0.020
Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 47/181 (25%)
Query: 12 IAASESSNPRD----ISPVEEVRNKRKESVLS-TARTMQVLNV-LQHWISKHTQD----- 60
+ + S P IS + N K V+S +++ LN+ L+ + D
Sbjct: 353 VNKTNSHLPAGKQVEIS----LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 61 FIQDKELRYMTLEFLEEIVC---TPNLLPAEYKAATQLTQMLTKACTKHETNL--QDLLA 115
F + K L++ + FL + + L+PA + ++ K K+ + +D+
Sbjct: 409 FSERK-LKF-SNRFLP-VASPFHSHLLVPA--------SDLINKDLVKNNVSFNAKDIQI 457
Query: 116 PPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTK--APHIVL 173
P + ++ LS I+E++ +D I ++ W E T+ A HI+
Sbjct: 458 PVYDTFDGSDLRVLSG-SISERI--VDCIIRLPVK--------W---ETTTQFKATHILD 503
Query: 174 F 174
F
Sbjct: 504 F 504
Score = 31.9 bits (72), Expect = 0.23
Identities = 53/304 (17%), Positives = 95/304 (31%), Gaps = 93/304 (30%)
Query: 3 TSTAATA-FDIAASESSNPRDISPVEEVRNKRKE-SVLSTARTMQVLNVLQHWISKHTQD 60
TS AA ++ A + + S ++ V N ++ + + S +
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN---YSAMIFE 1694
Query: 61 FIQDKELRYMTLEFLEEIVCTPNLL----PAEYKAATQLTQ--MLT--KACTKHETNLQD 112
I D +L+ T + +EI +ATQ TQ + KA +D
Sbjct: 1695 TIVDGKLK--TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA------FED 1746
Query: 113 L----LAPPPQ-VANK-----ENIETLSAL-EIAEQMTYIDYHIFKSIRSEEFFGQAWLK 161
L L P A E +AL +A+ M+ ++
Sbjct: 1747 LKSKGLIPADATFA--GHSLGEY----AALASLADVMS---------------IESL-VE 1784
Query: 162 SEKLTKAPHIVLFTQRFNTMSKLVANEILNRSNMS------QRVHVIEKWIAVANILRFL 215
V+F R TM V + L RSN RV A+ ++ +
Sbjct: 1785 ----------VVF-YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 216 N----------NFN--GVLTIIS--------AMNNSSVFRLKKTWDKVSKTVRPATLYQV 255
N+N + + N + +L+K + + + +L +V
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI--DIIELQKSLSLEEV 1891
Query: 256 QVDL 259
+ L
Sbjct: 1892 EGHL 1895
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.032
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 101 KACTKHETNLQDLLAP--PPQVANKENIE 127
+A K + +L+ L A P +A K +E
Sbjct: 20 QALKKLQASLK-LYADDSAPALAIKATME 47
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA
glycosylase, DNA alkylation, L complex, hydrolase-DNA
complex; HET: DNA; 1.50A {Bacillus cereus} PDB: 3jx7_A*
3bvs_A 3jy1_A* 3jxz_A*
Length = 232
Score = 28.5 bits (63), Expect = 2.3
Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 24/150 (16%)
Query: 65 KELRYMTLEFLEEIV-----------CTPNLLPAEYKAATQLTQMLTKACTKHETNLQDL 113
K + + FLEE++ P L + +L +
Sbjct: 90 KHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQR 149
Query: 114 LAPPPQVANKENIETLSALEIAEQMTYIDYHIFKSIRSEEFFGQ---AWLKSEKLTKAPH 170
A Q+ K+ ++ I Q+ S+EFF Q W+ E P
Sbjct: 150 AAILFQLKYKQKMDEELLFWIIGQL----------HSSKEFFIQKAIGWVLREYAKTNPD 199
Query: 171 IVLFTQRFNTMSKLVANEILNRSNMSQRVH 200
+V + N ++ L E + + ++
Sbjct: 200 VVWEYVQNNELAPLSKREAIKHIKQNYGIN 229
>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A
{Bombyx mori}
Length = 246
Score = 27.4 bits (61), Expect = 4.9
Identities = 13/125 (10%), Positives = 38/125 (30%), Gaps = 24/125 (19%)
Query: 72 LEFLEEIVCTPNLLPAE-YKAATQLTQMLTKACTKHETNLQDLLAPPPQVANKENIETLS 130
++L+E L + Y A ++L + + + +++ I+TL
Sbjct: 96 CDYLDEKYTRHTLHSHDPYVKAQD--RLLIERFNELIKGSLECFDTNFAFGSEQIIQTLE 153
Query: 131 ALEIA-----------EQMTYIDYHI------FKSIRSEEFFGQAWLKSEKLTKAPHIVL 173
E + +DY + + + +++ + P+
Sbjct: 154 IFEKELTNRGTNYFGGNRPGMLDYMVWPWVERLYLL--RCVNDRKFVEKKS--LFPNFAD 209
Query: 174 FTQRF 178
+ +
Sbjct: 210 WGDQM 214
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.128 0.363
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,938,486
Number of extensions: 218077
Number of successful extensions: 471
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 27
Length of query: 274
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 182
Effective length of database: 4,133,061
Effective search space: 752217102
Effective search space used: 752217102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)