RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10818
         (274 letters)



>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 481

 Score =  143 bits (362), Expect = 2e-40
 Identities = 54/239 (22%), Positives = 107/239 (44%), Gaps = 8/239 (3%)

Query: 14  ASESSNPRDISPVEEVRNKRKESVLSTARTMQVLNVLQHWISKHTQDFIQDKELRYMTLE 73
           A   +      P+     + ++  +   + ++VLNV +HW+  H  DF +D  L     E
Sbjct: 93  ADRIAIENGDQPLSAELKRFRKEYIQPVQ-LRVLNVCRHWVEHHFYDFERDAYLLQRMEE 151

Query: 74  FLEEIVCTPNLLPAEYKAATQLTQMLTKACTKHETNLQDLLAPP-------PQVANKENI 126
           F+  +         E        + + +              P        P      ++
Sbjct: 152 FIGTVRGKAMKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDL 211

Query: 127 ETLSALEIAEQMTYIDYHIFKSIRSEEFFGQAWLKSEKLTKAPHIVLFTQRFNTMSKLVA 186
            TL  +EIA Q+T ++  ++++++  E  G  W K +K   +P+++   +    ++    
Sbjct: 212 LTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFE 271

Query: 187 NEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTIISAMNNSSVFRLKKTWDKVSK 245
             I+   N+ +RV V+ + I +  + + LNNFNGVL ++SAMN+S V+RL  T++++  
Sbjct: 272 KCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPS 330


>d1n4ka1 a.118.22.1 (A:436-602) IP3 receptor type 1 binding core,
           domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 26.3 bits (58), Expect = 3.5
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 87  AEYKAATQLTQMLTKACTKHETNLQDLLAPPPQVANKENIETLSALEIAEQMTYIDYHIF 146
            E ++ T+L + L    T    + QD+L       N+E  + +    I +Q+  +    F
Sbjct: 33  NERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPF 92

Query: 147 KSIRSEEFFGQAWLKSEKLTKAPH 170
                 +      L+ E+L    H
Sbjct: 93  T-----DCGDGPMLRLEELGDQRH 111


>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 61

 Score = 24.4 bits (53), Expect = 4.6
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 82  PNLLPAEYKAATQLTQMLTKACTKHETNLQDLLA 115
           P  L  E +   +L ++        + NLQ L+A
Sbjct: 13  PTSLFTEGRYQQELEELKALGFANRDANLQALVA 46


>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 322

 Score = 25.6 bits (55), Expect = 7.1
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 183 KLVANEILNRSNMSQRVHVIEKWIAVANILRFLNNFNGVLTII 225
           KL A ++L ++ + Q+    E       +L  +     ++T+ 
Sbjct: 53  KLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLH 95


>d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase
           {Escherichia coli [TaxId: 562]}
          Length = 439

 Score = 25.5 bits (56), Expect = 8.0
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 12/53 (22%)

Query: 47  LNVLQHWISKHTQDFIQDKELRYMTLEFLEEIVCTPNLLPAEYKAATQLTQML 99
            N L  W+ ++ +D +   +L              P LL    +A   L+Q+L
Sbjct: 389 FNALNDWVDRYYRDRLTAADLA------------DPQLLREGREALDVLSQLL 429


>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio
           cholerae [TaxId: 666]}
          Length = 124

 Score = 24.4 bits (53), Expect = 8.6
 Identities = 4/31 (12%), Positives = 11/31 (35%), Gaps = 3/31 (9%)

Query: 140 YIDYHIF---KSIRSEEFFGQAWLKSEKLTK 167
                 +   +++R  EF      +  +L +
Sbjct: 90  CGHDGFYIDDRAVRPSEFASMNLEEIHQLFE 120


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.128    0.363 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 946,065
Number of extensions: 40105
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 7
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)