BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10819
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 26/162 (16%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++ EE Y+ +Q++ F +P + + ++V IF+N + ++ + LK L
Sbjct: 17 LIVTEENYVNDLQLVTEIFQKPLMESEL-----LTEKEVAMIFVNWKELIMCNIKLLKAL 71
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYV-RNHHY 119
R + + +P + ++GD+ LP + Y + R +
Sbjct: 72 RVRKK------MSGEKMP--------------VKMIGDILSAQLPHMQPYIRFCSRQLNG 111
Query: 120 SLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
+ + + + P+F + +KRLEM P C+G L F+ PM +
Sbjct: 112 AALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQR 153
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++ EE Y+ +Q++ F +P ++ + ++V IF+N + ++ + LK L
Sbjct: 90 LIVTEENYVNDLQLVTEIFQKPL-----TESELLTEKEVAMIFVNWKELIMCNIKLLKAL 144
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVR----- 115
R + + +P + ++GD+ LP + Q Y+R
Sbjct: 145 RVRKK------MSGEKMP--------------VKMIGDILSAQLPHM---QPYIRFCSCQ 181
Query: 116 -NHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
N +Q T+ + P+F + +KRL M P C+G L F+ PM +
Sbjct: 182 LNGAALIQQKTD--EAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQR 226
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 26/162 (16%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++ EE Y+ +Q++ F +P + + ++V IF+N + ++ + LK L
Sbjct: 17 LIVTEENYVNDLQLVTEIFQKPLMESEL-----LTEKEVAMIFVNWKELIMCNIKLLKAL 71
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYV-RNHHY 119
R + + +P + ++GD+ LP + Y + R +
Sbjct: 72 RVRKK------MSGEKMP--------------VKMIGDILSAQLPHMQPYIRFCSRQLNG 111
Query: 120 SLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
+ + + + P+F + +KRL M P C+G L F+ PM +
Sbjct: 112 AALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSEFILKPMQR 153
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 36/167 (21%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
+++ EE YM +Q++V F + +MA S + ++ IF+N + ++ + LK L
Sbjct: 35 LIQTEERYMADLQLVVEVFQK--RMAESG---FLTEGEMALIFVNWKELIMSNTKLLKAL 89
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVR----- 115
R ++ + V IG D+L L Q Y+R
Sbjct: 90 RVRKKTGGEKMPVQM-----------------IG------DILAAELSHMQAYIRFCSCQ 126
Query: 116 -NHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
N LQ T+ + +F + LK+L P C+G L FL PM +
Sbjct: 127 LNGAALLQQKTD--EDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQR 171
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 36/167 (21%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
+++ EE YM +Q++V F + +MA S + ++ IF+N + ++ + LK L
Sbjct: 106 LIQTEERYMADLQLVVEVFQK--RMAESG---FLTEGEMALIFVNWKELIMSNTKLLKAL 160
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVR----- 115
R ++ + V IG D+L L Q Y+R
Sbjct: 161 RVRKKTGGEKMPVQM-----------------IG------DILAAELSHMQAYIRFCSCQ 197
Query: 116 -NHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
N LQ T+ + +F + LK+L P C+G L FL PM +
Sbjct: 198 LNGAALLQQKTD--EDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQR 242
>pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix
Length = 209
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 29/127 (22%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++E E EY +++Q ++S +LRP + + S +++ + N E + Q+ ++ L
Sbjct: 21 ILETENEYSKELQTVLSTYLRPLQTSEK-----LSSANISYLMGNLEEICSFQQMLVQSL 75
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLP-MLGIYQEYVRNHHY 119
E+C L +G F L+P M +Y Y NH
Sbjct: 76 ---------------------EECTK--LPEAQQRVGGCFLNLMPQMKTLYLTYCANHPS 112
Query: 120 SLQVLTE 126
++ VLTE
Sbjct: 113 AVNVLTE 119
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 3 EAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTS 62
+ EE+Y + + + FL+P + +P +D+ IF+N E +L +H FLK +
Sbjct: 16 QTEEKYTDTLGSIQQHFLKPLQRFL---KP----QDIEIIFINIEDLLRVHTHFLKEMKE 68
Query: 63 RMESWPTLVLVDFSIPY 79
+ + L I Y
Sbjct: 69 ALGTPGAANLYQVFIKY 85
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 3 EAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLK 58
+ EE+Y + + + FL+P + +P +D+ IF+N E +L +H FLK
Sbjct: 207 QTEEKYTDTLGSIQQHFLKPLQRFL---KP----QDIEIIFINIEDLLRVHTHFLK 255
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 3 EAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTS 62
+ EE+Y + + + F++P + +P +D+ +IF+N E + +H FLK L
Sbjct: 35 QTEEKYTDTLGSIQQHFMKPLQRFL---KP----QDMETIFVNIEELFSVHTHFLKELKD 87
Query: 63 RMESWPTLVLVDFSIPY 79
+ L I Y
Sbjct: 88 ALAGPGATTLYQVFIKY 104
>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology
Domain
Length = 208
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 3 EAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTS 62
+ EE+Y + + + F++P + +D+ +IF+N E + +H FLK L
Sbjct: 37 QTEEKYTDTLGSIQQHFMKPLQRFLKP-------QDMETIFVNIEELFSVHTHFLKELKD 89
Query: 63 RMESWPTLVLVDFSIPYS 80
+ L I Y
Sbjct: 90 ALAGPGATTLYQVFIKYK 107
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 17/71 (23%)
Query: 59 GLTSRMESWPTLVLVDFSIPYS-----------------YEQCVNAYLVSEIGLLGDLFD 101
G T+ + +W TL + +P+ E+ V Y +GL+G D
Sbjct: 89 GQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELVGLIGPDSD 148
Query: 102 MLLPMLGIYQE 112
+L P LG Q+
Sbjct: 149 ILGPDLGADQQ 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,580,434
Number of Sequences: 62578
Number of extensions: 158646
Number of successful extensions: 411
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 21
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)