Query psy10819
Match_columns 173
No_of_seqs 135 out of 1024
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 19:18:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z0q_A XPLN, RHO guanine nucle 100.0 2.4E-35 8.3E-40 234.8 10.6 144 1-172 27-170 (346)
2 1by1_A Protein (PIX); RHO-GTPa 100.0 2.7E-35 9.1E-40 219.7 9.6 141 1-172 21-162 (209)
3 3jv3_A Intersectin-1; SH3 doma 100.0 8.5E-34 2.9E-38 220.0 13.3 147 1-172 90-237 (283)
4 1xcg_A PDZ-rhogef, RHO guanine 100.0 1.8E-33 6E-38 225.7 13.6 144 1-172 29-179 (368)
5 2dfk_A Collybistin II; DH doma 100.0 1.4E-33 4.7E-38 228.9 12.9 146 1-172 49-194 (402)
6 3p6a_A RHO guanine nucleotide 100.0 4.2E-33 1.4E-37 224.1 13.8 145 1-172 35-186 (377)
7 1foe_A T-lymphoma invasion and 100.0 1.6E-33 5.3E-38 226.8 11.0 156 1-172 19-174 (377)
8 2vrw_B P95VAV, VAV1, proto-onc 100.0 2.8E-33 9.7E-38 227.2 12.4 141 1-172 33-174 (406)
9 3mpx_A FYVE, rhogef and PH dom 100.0 2E-33 6.8E-38 229.8 10.8 149 1-172 30-183 (434)
10 3t06_A PDZ-rhogef, RHO guanine 100.0 1.3E-32 4.5E-37 224.0 13.8 144 1-172 71-221 (418)
11 1txd_A RHO guanine nucleotide 100.0 2E-32 6.7E-37 220.9 13.4 146 1-172 32-184 (385)
12 2pz1_A RHO guanine nucleotide 100.0 1E-32 3.4E-37 227.5 11.8 146 1-172 126-271 (466)
13 1dbh_A Protein (human SOS 1); 100.0 7.1E-33 2.4E-37 221.2 8.0 148 1-172 11-163 (354)
14 3odw_A RHO guanine nucleotide 100.0 5.8E-32 2E-36 226.2 13.7 145 1-172 188-339 (536)
15 3ky9_A Proto-oncogene VAV; cal 100.0 1.7E-31 5.8E-36 225.7 9.5 141 1-172 205-346 (587)
16 1kz7_A Guanine nucleotide exch 100.0 1.4E-30 4.7E-35 208.1 8.2 139 1-172 19-161 (353)
17 3jzy_A Intersectin 2; C2 domai 100.0 1.5E-31 5E-36 222.4 0.0 147 1-172 35-182 (510)
18 1nty_A Triple functional domai 100.0 1.2E-29 4.1E-34 199.3 10.4 139 1-172 17-156 (311)
19 2rgn_B RHOA/RAC/CDC42 exchange 100.0 2E-29 6.8E-34 201.4 10.3 137 1-172 20-157 (354)
20 3ksy_A SOS-1, SON of sevenless 100.0 1.8E-29 6.3E-34 224.5 7.1 148 1-172 208-360 (1049)
21 4gou_A EHRGS-rhogef; RGS domai 97.5 0.00095 3.3E-08 50.6 9.6 135 1-171 195-341 (518)
22 3f1i_H Hepatocyte growth facto 90.2 0.69 2.4E-05 29.1 5.0 55 6-63 3-57 (98)
23 1m3w_A H10H24; four-helix bund 72.4 5.5 0.00019 18.9 3.0 18 47-64 4-21 (32)
24 3b4s_A Protein LUXT; APC91483. 33.0 44 0.0015 20.9 3.2 60 95-162 6-65 (94)
25 3kae_A CDC27, possible protein 28.4 83 0.0028 22.4 4.2 25 45-69 180-204 (242)
No 1
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=100.00 E-value=2.4e-35 Score=234.81 Aligned_cols=144 Identities=20% Similarity=0.285 Sum_probs=122.6
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.+.|+.|+... ++++.++++.||+|+++|+.+|+.|+.+|+++...|....
T Consensus 27 li~TE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~~~--------- 92 (346)
T 2z0q_A 27 LSQGEEDLIEDLKLAKKAYHDPMLKL-----SIMTEQELNQIFGTLDSLIPLHEELLSQLRDVRKPDGSTE--------- 92 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCTTSCCS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCCccc---------
Confidence 58999999999999999999999875 3788999999999999999999999999999988776532
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHhcCccccCCChhHhhhhhhh
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMH 160 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~l~l~~~L~~PvQ 160 (173)
.||++|.++.+.|++|..||.||+.|...++++++|+.|+.|+++|+..+.|++++|.+||++|||
T Consensus 93 --------------~ig~~f~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~~~L~~PvQ 158 (346)
T 2z0q_A 93 --------------HVGPILVGWLPCLSSYDSYCSNQVAAKALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRS 158 (346)
T ss_dssp --------------CCHHHHHHHGGGGGHHHHHHHHHHHHHHHHHHHTTCHHHHCC-------------CTTTGGGHHHH
T ss_pred --------------hHHHHHHHHhhHHHHHHHHHHCHHHHHHHHHHhhcCHHHHHHHHHHHhCccCCCCCHHHHHHHHHH
Confidence 699999999999999999999999999999998889999999999999999999999999999999
Q ss_pred hccchhhhhccc
Q psy10819 161 QNAKKNFKKESY 172 (173)
Q Consensus 161 Ri~rY~LLLe~~ 172 (173)
||+||+|||+++
T Consensus 159 Ri~rY~LLL~~l 170 (346)
T 2z0q_A 159 RLVKYPLLLREI 170 (346)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhhHHHHHHHH
Confidence 999999999864
No 2
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=100.00 E-value=2.7e-35 Score=219.68 Aligned_cols=141 Identities=22% Similarity=0.316 Sum_probs=127.7
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.+.|+.|+... +.++..++..||+|+++|+.+|+.|+.+|+++...|....
T Consensus 21 Li~TE~~Yv~~L~~l~~~y~~pl~~~-----~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~~~--------- 86 (209)
T 1by1_A 21 ILETENEYSKELQTVLSTYLRPLQTS-----EKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLPEAQQ--------- 86 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT-----SSSSSSGGGTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-----CCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCCcchh---------
Confidence 58999999999999999999998753 3678899999999999999999999999999998886532
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCchhh-hHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHhcCccccCCChhHhhhhhh
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLPMLG-IYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~-~Y~~Y~~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~l~l~~~L~~Pv 159 (173)
.||++|.++.+.|+ +|..||.||+.|...++++ ++.|+.|++.++. +.+++++|.+||++||
T Consensus 87 --------------~ig~~f~~~~~~f~~~Y~~Y~~n~~~a~~~l~~~--~~~f~~fl~~~~~-~~~~~l~L~s~Li~Pv 149 (209)
T 1by1_A 87 --------------RVGGCFLNLMPQMKTLYLTYCANHPSAVNVLTEH--SEELGEFMETKGA-SSPGILVLTTGLSKPF 149 (209)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTHHHHTTTTCC-CSSTTTHHHHHTTSTT
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHhcC-CCCCcCCHHHHhhHHH
Confidence 69999999999996 9999999999999999976 7899999999864 4567899999999999
Q ss_pred hhccchhhhhccc
Q psy10819 160 HQNAKKNFKKESY 172 (173)
Q Consensus 160 QRi~rY~LLLe~~ 172 (173)
|||+||+|||++.
T Consensus 150 QRi~rY~LLL~~L 162 (209)
T 1by1_A 150 MRLDKYPTLLKEL 162 (209)
T ss_dssp TGGGTHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 9999999999864
No 3
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=100.00 E-value=8.5e-34 Score=220.04 Aligned_cols=147 Identities=22% Similarity=0.463 Sum_probs=132.3
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.++|+.|+... +.++..++..||+|+++|+.+|+.|+.+|+.+...|....
T Consensus 90 Li~TE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~~~~fl~~L~~~~~~~~~~~--------- 155 (283)
T 3jv3_A 90 LIVTEENYVNDLQLVTEIFQKPLTES-----ELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKM--------- 155 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTT-----CSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTC---------
T ss_pred HHhhHHHHHHHHHHHHHHHHhhcccc-----CCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHhccccCC---------
Confidence 58999999999999999999998854 4788999999999999999999999999999886544311
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHhcCccccCCChhHhhhhhh
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~-~~~~f~~~l~~~~~~~~~~~l~l~~~L~~Pv 159 (173)
....||++|.++.+.|++|..||.||+.|...+..+. +++.|+.|++.++..+.|++++|.+||++||
T Consensus 156 -----------~~~~ig~~f~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~Pv 224 (283)
T 3jv3_A 156 -----------PVKMIGDILSAQLPHMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPM 224 (283)
T ss_dssp -----------CCCCCHHHHHHHGGGGTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHHHTTHHH
T ss_pred -----------chhHHHHHHHHHHhhchhHHHHHcCHHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCCHHHHhhhhH
Confidence 0136999999999999999999999999999999664 6999999999999999999999999999999
Q ss_pred hhccchhhhhccc
Q psy10819 160 HQNAKKNFKKESY 172 (173)
Q Consensus 160 QRi~rY~LLLe~~ 172 (173)
|||+||+|||++.
T Consensus 225 QRi~rY~LLL~~l 237 (283)
T 3jv3_A 225 QRVTRYPLIIKNI 237 (283)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHH
Confidence 9999999999864
No 4
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=100.00 E-value=1.8e-33 Score=225.68 Aligned_cols=144 Identities=16% Similarity=0.281 Sum_probs=132.0
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.++|+.|+... ++++.++++.||+|+++|+.+|+.|+.+|+++...|+...
T Consensus 29 Li~TE~~Yv~~L~~l~~~f~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~~~--------- 94 (368)
T 1xcg_A 29 LFVTEASHLRTLRVLDLIFYQRMKKE-----NLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGPIIK--------- 94 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHTCSSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCcC---------
Confidence 58999999999999999999999874 3788999999999999999999999999999988876632
Q ss_pred hhhhhhhhhhhccccHHHHHHHhC------chhhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHhcCccccCCChhH
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLL------PMLGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEM 153 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~------~~~~~Y~~Y~~~~~~a~~~l~~~~-~~~~f~~~l~~~~~~~~~~~l~l~~ 153 (173)
.||++|.++. .++++|..||.||+.|...++++. +++.|+.|+++|+.++.|++++|.+
T Consensus 95 --------------~ig~~f~~~~~~~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~~ 160 (368)
T 1xcg_A 95 --------------EISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRD 160 (368)
T ss_dssp --------------CCHHHHHHHHSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCCHHH
T ss_pred --------------cHHHHHHHHccchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCCHHHHHHHHHHHhChhhccCChHH
Confidence 6999999875 357899999999999999999775 6999999999999999999999999
Q ss_pred hhhhhhhhccchhhhhccc
Q psy10819 154 FLTFPMHQNAKKNFKKESY 172 (173)
Q Consensus 154 ~L~~PvQRi~rY~LLLe~~ 172 (173)
||++|||||+||+|||+++
T Consensus 161 ~Li~PvQRi~rY~LLL~~l 179 (368)
T 1xcg_A 161 LIISEMQRLTKYPLLLESI 179 (368)
T ss_dssp HTTHHHHHHHHHHHHHHHH
T ss_pred HhhhHhhhhhhHHHHHHHH
Confidence 9999999999999999864
No 5
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=100.00 E-value=1.4e-33 Score=228.92 Aligned_cols=146 Identities=17% Similarity=0.280 Sum_probs=133.3
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.+.|+.|+... .++++..++..||+|+++|+.+|+.|+.+|+++...|.+..
T Consensus 49 Ll~TE~~Yv~~L~~l~~~y~~pl~~~----~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~~~~~~--------- 115 (402)
T 2dfk_A 49 IMSTERHYIKHLKDICEGYLKQCRKR----RDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHL--------- 115 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHC----TTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSSCGGG---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC----cCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHccCCCch---------
Confidence 58999999999999999999998753 24788999999999999999999999999999987765421
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHhcCccccCCChhHhhhhhhh
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMH 160 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~l~l~~~L~~PvQ 160 (173)
..||++|.++.+.|++|..||.||+.|...+.++.+++.|+.|++.|+..+.+++++|.+||++|||
T Consensus 116 -------------~~ig~ifl~~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQ 182 (402)
T 2dfk_A 116 -------------SEIGPCFLEHQDGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQ 182 (402)
T ss_dssp -------------CCCHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCCSCCHHHHHTHHHH
T ss_pred -------------hhHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHcChHHHHHHHHHHhhhhcccCCHHHHHhHHHH
Confidence 2699999999999999999999999999999998888999999999998888889999999999999
Q ss_pred hccchhhhhccc
Q psy10819 161 QNAKKNFKKESY 172 (173)
Q Consensus 161 Ri~rY~LLLe~~ 172 (173)
||+||+|||+++
T Consensus 183 Ri~rY~LLL~~L 194 (402)
T 2dfk_A 183 KICKYPLQLAEL 194 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 6
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=100.00 E-value=4.2e-33 Score=224.05 Aligned_cols=145 Identities=19% Similarity=0.366 Sum_probs=130.7
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.++|+.|+... +.++..++..||+|+++|+++|+.|+.+|+++...|....
T Consensus 35 Li~TE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~--------- 100 (377)
T 3p6a_A 35 LLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLI--------- 100 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHH-----TSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHC--CC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc-----CCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhccCCCC---------
Confidence 58999999999999999999999865 3788999999999999999999999999999887765421
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCc------hhhhHHHHHhcHHHHHHHHHHH-hcChhHHHHHHHHhcCccccCCChhH
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLP------MLGIYQEYVRNHHYSLQVLTEC-KQQPEFVQLLKRLEMKPACQGRSLEM 153 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~------~~~~Y~~Y~~~~~~a~~~l~~~-~~~~~f~~~l~~~~~~~~~~~l~l~~ 153 (173)
..||++|.++.+ ++++|..||.||+.|...++++ ++++.|+.|+++++..+.|++++|.+
T Consensus 101 -------------~~ig~~fl~~~~~~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~~ 167 (377)
T 3p6a_A 101 -------------EEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKD 167 (377)
T ss_dssp -------------CCCHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCCHHH
T ss_pred -------------CcHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhCcccCCCCHHH
Confidence 269999999887 3479999999999999999976 47999999999999999999999999
Q ss_pred hhhhhhhhccchhhhhccc
Q psy10819 154 FLTFPMHQNAKKNFKKESY 172 (173)
Q Consensus 154 ~L~~PvQRi~rY~LLLe~~ 172 (173)
||++|||||+||+|||+++
T Consensus 168 ~Li~PvQRi~rY~LLL~~l 186 (377)
T 3p6a_A 168 MIPTEMQRLTKYPLLLQSI 186 (377)
T ss_dssp HTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999864
No 7
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=100.00 E-value=1.6e-33 Score=226.75 Aligned_cols=156 Identities=19% Similarity=0.334 Sum_probs=132.8
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.++|+.|+... +.++.++++.||+|+++|+.+|+.|+.+|+++...|+...... .
T Consensus 19 li~TE~~Yv~~L~~l~~~y~~pl~~~-----~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~~-----~ 88 (377)
T 1foe_A 19 LLETERTYVKDLNCLMERYLKPLQKE-----TFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLVPDLEKLE-----K 88 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHTS-----SSSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSSCGGGCC-----S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcchhhh-----h
Confidence 58999999999999999999999863 4788999999999999999999999999999998876531000 0
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHhcCccccCCChhHhhhhhhh
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMH 160 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~l~l~~~L~~PvQ 160 (173)
..+. ......||++|.++.+.|++|..||.||+.|...+.++++|+.|+.|++.++..+ +++++|.+||++|||
T Consensus 89 ~~~~-----~~~~~~ig~~f~~~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~-~~~l~L~s~Li~PvQ 162 (377)
T 1foe_A 89 VDQF-----KKVLFSLGGSFLYYADRFKLYSAFCASHTKVPKVLVKAKTDTAFKAFLDAQNPRQ-QHSSTLESYLIKPIQ 162 (377)
T ss_dssp GGGG-----HHHHHHHHHHHHHHTTGGGGHHHHHHHTTTHHHHHTTTTTCHHHHHHHHHHCTTC-CGGGSHHHHTTHHHH
T ss_pred hhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHhhcc-ccCcCHHHHhccchh
Confidence 0000 0012369999999999999999999999999999998888999999999997765 779999999999999
Q ss_pred hccchhhhhccc
Q psy10819 161 QNAKKNFKKESY 172 (173)
Q Consensus 161 Ri~rY~LLLe~~ 172 (173)
||+||+|||+++
T Consensus 163 Ri~rY~LLL~~l 174 (377)
T 1foe_A 163 RVLKYPLLLREL 174 (377)
T ss_dssp HHTTHHHHHHHH
T ss_pred hhccHHHHHHHH
Confidence 999999999864
No 8
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=100.00 E-value=2.8e-33 Score=227.25 Aligned_cols=141 Identities=18% Similarity=0.290 Sum_probs=131.0
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.+.|+.||.. .++.++++.||+|+++|+.+|+.|+.+|+++...|..
T Consensus 33 Li~TE~~Yv~~L~~l~~~f~~~l~~-------~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~----------- 94 (406)
T 2vrw_B 33 IQQTEEKYTDTLGSIQQHFMKPLQR-------FLKPQDMETIFVNIEELFSVHTHFLKELKDALAGPGA----------- 94 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTT-------TSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSGGG-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCCc-----------
Confidence 5899999999999999999999862 5788999999999999999999999999999987643
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHhcCccccCCChhHhhhhhh
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~-~~~~f~~~l~~~~~~~~~~~l~l~~~L~~Pv 159 (173)
..||++|.++.+.|++|..||.||+.|...+++++ .++.|++|+++++..+.+++++|.+||++||
T Consensus 95 -------------~~ig~~f~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~~~Li~Pv 161 (406)
T 2vrw_B 95 -------------TTLYQVFIKYKERFLVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPM 161 (406)
T ss_dssp -------------TTHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSCCHHHHTTHHH
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhhccccCCcchHHHhhhHH
Confidence 26999999999999999999999999999999876 5999999999999988899999999999999
Q ss_pred hhccchhhhhccc
Q psy10819 160 HQNAKKNFKKESY 172 (173)
Q Consensus 160 QRi~rY~LLLe~~ 172 (173)
|||+||+|||+++
T Consensus 162 QRi~rY~LLL~~l 174 (406)
T 2vrw_B 162 QRVLKYHLLLQEL 174 (406)
T ss_dssp HHHTTHHHHHHHH
T ss_pred HHHhhHHHHHHHH
Confidence 9999999999864
No 9
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=229.76 Aligned_cols=149 Identities=17% Similarity=0.191 Sum_probs=129.8
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhh----cCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCC
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAA----SSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFS 76 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~----~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~ 76 (173)
|++||++||++|+.+.++|+.||.... ..+.+.++..++..||+|+++|+.+|+.|+.+|+++...|....
T Consensus 30 Ll~TE~~Yv~~L~~l~~~f~~pl~~~l~~~~~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~~~~~~----- 104 (434)
T 3mpx_A 30 LLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIHDLHQGILEELEERLSNWESQQ----- 104 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhccCcc-----
Confidence 589999999999999999999997642 23456788899999999999999999999999999999987632
Q ss_pred CCcchhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHH-hcChhHHHHHHHHhcCccccCCChhHhh
Q psy10819 77 IPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTEC-KQQPEFVQLLKRLEMKPACQGRSLEMFL 155 (173)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~-~~~~~f~~~l~~~~~~~~~~~l~l~~~L 155 (173)
.||++|.++.+.|++|..||.||+.|...++++ ++++.|++|+++++..+.+++++|.+||
T Consensus 105 ------------------~ig~ifl~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~L 166 (434)
T 3mpx_A 105 ------------------KVADVFLAREQGFDHHATHILQFDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKHRL 166 (434)
T ss_dssp ------------------CCTHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------CHHHHH
T ss_pred ------------------cHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHcCcccCCCCHHHHH
Confidence 799999999999999999999999999999974 5799999999999999999999999999
Q ss_pred hhhhhhccchhhhhccc
Q psy10819 156 TFPMHQNAKKNFKKESY 172 (173)
Q Consensus 156 ~~PvQRi~rY~LLLe~~ 172 (173)
++|||||+||+|||+++
T Consensus 167 i~PvQRi~rY~LLL~~l 183 (434)
T 3mpx_A 167 LRVVQRLFQYQVLLTDY 183 (434)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHHHH
Confidence 99999999999999864
No 10
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=224.01 Aligned_cols=144 Identities=16% Similarity=0.266 Sum_probs=132.4
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||+.||++|+.+.++|+.|+... ++++..++..||+|+++|+.+|+.|+.+|+++...|....
T Consensus 71 Li~TE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~--------- 136 (418)
T 3t06_A 71 LFVTEASHLRTLRVLDLIFYQRMKKE-----NLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGPIIK--------- 136 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHGGGCSSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhcCCCcC---------
Confidence 58999999999999999999999864 4788999999999999999999999999999988877632
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCch------hhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHhcCccccCCChhH
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLPM------LGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEM 153 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~~------~~~Y~~Y~~~~~~a~~~l~~~~-~~~~f~~~l~~~~~~~~~~~l~l~~ 153 (173)
.||++|.++.+. +++|..||.||+.|...++++. +++.|+.|+++++.++.|++++|.+
T Consensus 137 --------------~ig~ifl~~~~~~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~s 202 (418)
T 3t06_A 137 --------------EISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRD 202 (418)
T ss_dssp --------------CCHHHHHHHHSTHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHH
T ss_pred --------------cHHHHHHHhcchhhhHHHhhhhHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHhCcccccCCHHH
Confidence 699999998764 4899999999999999999775 6999999999999999999999999
Q ss_pred hhhhhhhhccchhhhhccc
Q psy10819 154 FLTFPMHQNAKKNFKKESY 172 (173)
Q Consensus 154 ~L~~PvQRi~rY~LLLe~~ 172 (173)
||++|||||+||+|||+++
T Consensus 203 ~Li~PvQRi~rY~LLL~~l 221 (418)
T 3t06_A 203 LIISEMQRLTKYPLLLESI 221 (418)
T ss_dssp HTTHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999864
No 11
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=99.98 E-value=2e-32 Score=220.89 Aligned_cols=146 Identities=18% Similarity=0.270 Sum_probs=129.2
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.++|+.||... ++++..++..||+|+++|+.+| .||.+|++++..|....
T Consensus 32 Li~TE~~Yv~~L~~l~~~f~~~l~~~-----~~l~~~~~~~iF~ni~~I~~~h-~fL~~l~~~~~~~~~~~--------- 96 (385)
T 1txd_A 32 LFYTERAHVRTLKVLDQVFYQRVSRE-----GILSPSELRKIFSNLEDILQLH-IGLNEQMKAVRKRNETS--------- 96 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHH-----TCSCHHHHHHHHTTHHHHHHHH-HHHHHHHHHHHTTCTTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHHHHhhcCC---------
Confidence 58999999999999999999999874 3788999999999999999999 99999999876543210
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCc------hhhhHHHHHhcHHHHHHHHHHH-hcChhHHHHHHHHhcCccccCCChhH
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLP------MLGIYQEYVRNHHYSLQVLTEC-KQQPEFVQLLKRLEMKPACQGRSLEM 153 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~------~~~~Y~~Y~~~~~~a~~~l~~~-~~~~~f~~~l~~~~~~~~~~~l~l~~ 153 (173)
....||++|.++.+ ++++|..||.||+.|...++.+ ++|+.|++|+++|+.++.|++++|.+
T Consensus 97 -----------~~~~ig~~fl~~~~~~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~~ 165 (385)
T 1txd_A 97 -----------VIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKD 165 (385)
T ss_dssp -----------CCCCCHHHHHHHHSTHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHHSGGGTTCCHHH
T ss_pred -----------CcccHHHHHHHHccchhHHHHHHHHHHHHHchHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCChHH
Confidence 01369999999864 3489999999999999999976 56999999999999999999999999
Q ss_pred hhhhhhhhccchhhhhccc
Q psy10819 154 FLTFPMHQNAKKNFKKESY 172 (173)
Q Consensus 154 ~L~~PvQRi~rY~LLLe~~ 172 (173)
||++|||||+||+|||+++
T Consensus 166 ~Li~PvQRi~rY~LLL~~l 184 (385)
T 1txd_A 166 IIPTQMQRLTKYPLLLDNI 184 (385)
T ss_dssp HTTHHHHHHHHHHHHHHHH
T ss_pred HhhhHHhHhhhHHHHHHHH
Confidence 9999999999999999864
No 12
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=99.98 E-value=1e-32 Score=227.53 Aligned_cols=146 Identities=21% Similarity=0.322 Sum_probs=133.0
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.++|+.|+... .++++..++..||+|+++|+.+|+.|+.+|+++...|.+..
T Consensus 126 Ll~TE~~Yv~~L~~l~~~y~~~l~~~----~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~~~~~~--------- 192 (466)
T 2pz1_A 126 ILSTERDYIKHLRDICEGYVRQCRKR----ADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHL--------- 192 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHC----TTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSSCGGG---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC----cCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHccCCCcc---------
Confidence 58999999999999999999998743 24788999999999999999999999999999987665421
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHhcCccccCCChhHhhhhhhh
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMH 160 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~l~l~~~L~~PvQ 160 (173)
..||++|.++.+.|++|..||.||+.|...++++.+++.|..|++.|+..+.+.+++|.+||++|||
T Consensus 193 -------------~~ig~~fl~~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~f~~f~~~~~~~~~~~~l~L~~~Li~PvQ 259 (466)
T 2pz1_A 193 -------------SELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQ 259 (466)
T ss_dssp -------------CCCHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCSCCHHHHHHHHHH
T ss_pred -------------chHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhccHHHHHHHHHHHhhhhccCCHHHHhhhHHH
Confidence 3699999999999999999999999999999998888999999999988888889999999999999
Q ss_pred hccchhhhhccc
Q psy10819 161 QNAKKNFKKESY 172 (173)
Q Consensus 161 Ri~rY~LLLe~~ 172 (173)
||+||+|||+++
T Consensus 260 Ri~rY~LLL~~l 271 (466)
T 2pz1_A 260 KICKYPLQLAEL 271 (466)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhhhHHHHHHHH
Confidence 999999999864
No 13
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=99.97 E-value=7.1e-33 Score=221.17 Aligned_cols=148 Identities=18% Similarity=0.202 Sum_probs=129.6
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.++|+.||.... ++++..+++.||+|+++|+.+|+.|+.+|+++...|.... |
T Consensus 11 li~TE~~Yv~~L~~l~~~y~~~l~~~~----~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~------~-- 78 (354)
T 1dbh_A 11 FMAEIRQYIRELNLIIKVFREPFVSNS----KLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGS------P-- 78 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHCT----TTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCTTS------S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc----CCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhccccCC------c--
Confidence 589999999999999999999998643 3689999999999999999999999999999987764321 0
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCc--hhhhHHHHHhcH--HHHHHHHHHHhcChhHHHHHHHH-hcCccccCCChhHhh
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLP--MLGIYQEYVRNH--HYSLQVLTECKQQPEFVQLLKRL-EMKPACQGRSLEMFL 155 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~--~~~~Y~~Y~~~~--~~a~~~l~~~~~~~~f~~~l~~~-~~~~~~~~l~l~~~L 155 (173)
...||++|.++.+ .|++|..||.|| +.|...+.+++++|.|..|++.+ +..+.+++++|.+||
T Consensus 79 ------------~~~ig~~f~~~~~~~~f~~Y~~Y~~n~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~~~~L~~~L 146 (354)
T 1dbh_A 79 ------------HPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLL 146 (354)
T ss_dssp ------------SCCCHHHHHHHHHTTTTHHHHHHHHHHTSTTHHHHHHHHHHSTTHHHHHHHHCTTHHHHHHHTHHHHT
T ss_pred ------------cchHHHHHHHHhHHhhhhHHHHHHHhccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 0269999999998 899999999999 66679999888899999999884 555668899999999
Q ss_pred hhhhhhccchhhhhccc
Q psy10819 156 TFPMHQNAKKNFKKESY 172 (173)
Q Consensus 156 ~~PvQRi~rY~LLLe~~ 172 (173)
++|||||+||+|||+..
T Consensus 147 i~PvQRi~rY~LLL~~l 163 (354)
T 1dbh_A 147 LAPVYHCLHYFELLKQL 163 (354)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchHHHHHHHH
Confidence 99999999999999863
No 14
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=99.97 E-value=5.8e-32 Score=226.24 Aligned_cols=145 Identities=19% Similarity=0.366 Sum_probs=130.2
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||+.||++|+.+.++|+.|+... +.++..++..||+|+++|+.+|+.|+.+|+++...|....
T Consensus 188 Li~TE~~YV~~L~~l~~~y~~pl~~~-----~~l~~~~~~~IF~nie~I~~~h~~fL~~L~~~~~~~~~~~--------- 253 (536)
T 3odw_A 188 LLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLI--------- 253 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTC---C---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCccc---------
Confidence 58999999999999999999999864 4789999999999999999999999999999887754421
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCc------hhhhHHHHHhcHHHHHHHHHHH-hcChhHHHHHHHHhcCccccCCChhH
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLP------MLGIYQEYVRNHHYSLQVLTEC-KQQPEFVQLLKRLEMKPACQGRSLEM 153 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~------~~~~Y~~Y~~~~~~a~~~l~~~-~~~~~f~~~l~~~~~~~~~~~l~l~~ 153 (173)
..||++|.++.+ ++++|..||.||+.|...+.++ ++|+.|+.|+++|+..+.|++++|.+
T Consensus 254 -------------~~Igdifl~~~~~~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~s 320 (536)
T 3odw_A 254 -------------EEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKD 320 (536)
T ss_dssp -------------CCCHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHH
T ss_pred -------------ccHHHHHHHHcchhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhCHHHHHHHHHHhhCcccccCCHHH
Confidence 269999999876 3479999999999999999976 47999999999999999999999999
Q ss_pred hhhhhhhhccchhhhhccc
Q psy10819 154 FLTFPMHQNAKKNFKKESY 172 (173)
Q Consensus 154 ~L~~PvQRi~rY~LLLe~~ 172 (173)
||++|||||+||+|||+++
T Consensus 321 ~Li~PvQRi~rY~LLL~~L 339 (536)
T 3odw_A 321 MIPTEMQRLTKYPLLLQSI 339 (536)
T ss_dssp HTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864
No 15
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.97 E-value=1.7e-31 Score=225.71 Aligned_cols=141 Identities=19% Similarity=0.285 Sum_probs=131.3
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.++|+.||.. .++..++..||+|+++|+.+|+.|+.+|+.+...|...
T Consensus 205 Li~TE~~Yv~~L~~l~~~y~~~L~~-------~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~~~~~---------- 267 (587)
T 3ky9_A 205 IQQTEEKYTDTLGSIQQHFLKPLQR-------FLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGTPGAA---------- 267 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHT-------TSCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhccCcc----------
Confidence 5899999999999999999999873 56778999999999999999999999999999888542
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHhcCccccCCChhHhhhhhh
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~-~~~~f~~~l~~~~~~~~~~~l~l~~~L~~Pv 159 (173)
.||++|.++.+.|++|..||.||+.|...++++. +++.|+.|+++++..+.+++++|.+||++||
T Consensus 268 --------------~ig~if~~~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~Pv 333 (587)
T 3ky9_A 268 --------------NLYQVFIKYKERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRANNGRFTLRDLLMVPM 333 (587)
T ss_dssp --------------SHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHTCHHHHTTTTHHHHHHHSSSCCHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHhcchHHHHHhChHHHHHHHHHHHhcCHHHHHHHHHHHhccccCCCCHHHHHhHHH
Confidence 6999999999999999999999999999999775 6999999999999999999999999999999
Q ss_pred hhccchhhhhccc
Q psy10819 160 HQNAKKNFKKESY 172 (173)
Q Consensus 160 QRi~rY~LLLe~~ 172 (173)
|||+||+|||+++
T Consensus 334 QRi~rY~LLL~~L 346 (587)
T 3ky9_A 334 QRVLKYHLLLQEL 346 (587)
T ss_dssp HHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 16
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=99.96 E-value=1.4e-30 Score=208.05 Aligned_cols=139 Identities=21% Similarity=0.348 Sum_probs=117.3
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCH---HhHhhhccChHHHHHHHH-HHHHHHHHHHhcCCCcccccCC
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSH---EDVNSIFLNSETVLFLHQ-IFLKGLTSRMESWPTLVLVDFS 76 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~---~~~~~iF~n~~~i~~~h~-~fl~~L~~~~~~~~~~~~~~~~ 76 (173)
|++||++||++|+.+.+.|+.|+...... +.++. +++..||+|+++|+.+|+ .|+.+|+++...+
T Consensus 19 Ll~TE~~Yv~~L~~l~~~y~~pl~~~~~~--~~~p~~~~~~~~~iF~ni~~I~~~h~~~fl~~Le~~~~~~--------- 87 (353)
T 1kz7_A 19 LLDTERAYVEELLCVLEGYAAEMDNPLMA--HLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCIDCP--------- 87 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGGCTTTT--TTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHHTTTTCG---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc--cCCChhhhhhHHHHHhCHHHHHHHHHHHHHHHHHHHhcCH---------
Confidence 58999999999999999999998765321 23443 579999999999999997 7999999876432
Q ss_pred CCcchhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHhcCccccCCChhHhhh
Q psy10819 77 IPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLT 156 (173)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~l~l~~~L~ 156 (173)
..||++|.++.+.|++|..||.||+.|...+++++.+ .|+++|.... +++++|.+||+
T Consensus 88 -----------------~~ig~~fl~~~~~f~~Y~~Y~~n~~~a~~~l~~~~~~----~f~~~~~~~~-~~~l~L~~~Li 145 (353)
T 1kz7_A 88 -----------------ELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCSDC----PFFQECQKKL-DHKLSLDSYLL 145 (353)
T ss_dssp -----------------GGHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHH-TCSSCHHHHHT
T ss_pred -----------------HHHHHHHHHhhHHHHHHHHHHhChHHHHHHHHHhhcc----hHHHHHHHhc-CCCCCHHHHHH
Confidence 1599999999999999999999999999999988776 4455554433 67899999999
Q ss_pred hhhhhccchhhhhccc
Q psy10819 157 FPMHQNAKKNFKKESY 172 (173)
Q Consensus 157 ~PvQRi~rY~LLLe~~ 172 (173)
+|||||+||+|||+++
T Consensus 146 ~PvQRi~rY~LLL~~l 161 (353)
T 1kz7_A 146 KPVQRITKYQLLLKEM 161 (353)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999864
No 17
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.96 E-value=1.5e-31 Score=222.36 Aligned_cols=147 Identities=22% Similarity=0.417 Sum_probs=0.0
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.++|+.|+... +.++..++..||+|+++|+.+|+.|+.+|+.+...|....
T Consensus 35 Li~TE~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~~~--------- 100 (510)
T 3jzy_A 35 LIQTEERYMADLQLVVEVFQKRMAES-----GFLTEGEMALIFVNWKELIMSNTKLLKALRVRKKTGGEKM--------- 100 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHhccCCCC---------
Confidence 68999999999999999999998764 3678899999999999999999999999999887654311
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHh-cChhHHHHHHHHhcCccccCCChhHhhhhhh
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECK-QQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~-~~~~f~~~l~~~~~~~~~~~l~l~~~L~~Pv 159 (173)
....||++|.++.+.|++|..||.||+.|...++++. +++.|+.|+++++..+.|++++|.+||++||
T Consensus 101 -----------~~~~ig~~f~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~~~~~~~~~~~~~l~L~~~L~~Pv 169 (510)
T 3jzy_A 101 -----------PVQMIGDILAAELSHMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPM 169 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------chhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCCHHHHhChhh
Confidence 0136999999999999999999999999999999664 6999999999999999999999999999999
Q ss_pred hhccchhhhhccc
Q psy10819 160 HQNAKKNFKKESY 172 (173)
Q Consensus 160 QRi~rY~LLLe~~ 172 (173)
|||+||+|||+++
T Consensus 170 QRi~rY~LLL~~l 182 (510)
T 3jzy_A 170 QRITRYPLLIRSI 182 (510)
T ss_dssp -------------
T ss_pred hhhcCcHHHHHHH
Confidence 9999999999875
No 18
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=99.96 E-value=1.2e-29 Score=199.33 Aligned_cols=139 Identities=18% Similarity=0.285 Sum_probs=113.3
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHH-HHHHHHHHHhcCCCcccccCCCCc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQI-FLKGLTSRMESWPTLVLVDFSIPY 79 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~-fl~~L~~~~~~~~~~~~~~~~~~~ 79 (173)
|++||++||++|+.+.+.|+.|+...... .|....++++.||+|+++|+.+|+. |+.+|+++...+
T Consensus 17 l~~TE~~Yv~~L~~l~~~y~~~l~~~~~~-l~~~~~~~~~~iF~ni~~i~~~h~~~fl~~L~~~~~~~------------ 83 (311)
T 1nty_A 17 LIQTEKAYVRDLRECMDTYLWEMTSGVEE-IPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQLP------------ 83 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSC-CCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTTTCG------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC-CChhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHCCH------------
Confidence 58999999999999999999999864311 1222235789999999999999996 999999875321
Q ss_pred chhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHhcCccccCCChhHhhhhhh
Q psy10819 80 SYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~l~l~~~L~~Pv 159 (173)
..||++|.++.+.|++|..||.||+.|...+.+.. + .|++.+...+. .+++|.+||++||
T Consensus 84 --------------~~ig~~f~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~-~----~f~~~~~~~~~-~~l~L~~~Li~Pv 143 (311)
T 1nty_A 84 --------------EDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHA-G----SYFDEIQQRHG-LANSISSYLIKPV 143 (311)
T ss_dssp --------------GGTHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHT-T----THHHHHHHHHT-CSSCHHHHHTHHH
T ss_pred --------------HHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH-H----HHHHHHHHhcc-CCCCHHHHhhhhH
Confidence 15999999999999999999999999999997532 2 44455554443 4799999999999
Q ss_pred hhccchhhhhccc
Q psy10819 160 HQNAKKNFKKESY 172 (173)
Q Consensus 160 QRi~rY~LLLe~~ 172 (173)
|||+||+|||+++
T Consensus 144 QRi~rY~LLL~~l 156 (311)
T 1nty_A 144 QRITKYQLLLKEL 156 (311)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 19
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=201.39 Aligned_cols=137 Identities=20% Similarity=0.283 Sum_probs=115.3
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHH-HHHHHHHHHhcCCCcccccCCCCc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQI-FLKGLTSRMESWPTLVLVDFSIPY 79 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~-fl~~L~~~~~~~~~~~~~~~~~~~ 79 (173)
|++||++||++|+.+.++|+.|+.... .|.....++..||+|+++|+.+|+. |+.+|+.+...|.
T Consensus 20 Li~TE~~Yv~~L~~l~~~y~~~l~~~~---~p~~l~~~~~~iF~ni~~I~~~h~~~fl~~L~~~~~~~~----------- 85 (354)
T 2rgn_B 20 LVETEKMYVDDLGQIVEGYMATMAAQG---VPESLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKDPD----------- 85 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHC---CCSSSGGGHHHHHTTHHHHHHHHHHTHHHHHHHHHSCGG-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHcCHH-----------
Confidence 589999999999999999999998753 2332235689999999999999999 9999999875431
Q ss_pred chhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHhcCccccCCChhHhhhhhh
Q psy10819 80 SYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~l~l~~~L~~Pv 159 (173)
.||++|.++.+.|++|..||.||+.|...++++.+ +.|+++.+ +.+++++|.+||++||
T Consensus 86 ---------------~ig~~fl~~~~~f~~Y~~Y~~n~~~a~~~l~~~~~-~~f~~~~~-----~~~~~l~L~s~Li~Pv 144 (354)
T 2rgn_B 86 ---------------WLAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFGD-SYFEELRQ-----QLGHRLQLNDLLIKPV 144 (354)
T ss_dssp ---------------GHHHHHHHTTTTTHHHHHHHHTSHHHHHHHTTTSH-HHHHHHHH-----HHCCSSCHHHHTTHHH
T ss_pred ---------------HHHHHHHHhHHHHHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHH-----hcCCCCCHHHHhhhHH
Confidence 59999999999999999999999999999986642 34444433 3467899999999999
Q ss_pred hhccchhhhhccc
Q psy10819 160 HQNAKKNFKKESY 172 (173)
Q Consensus 160 QRi~rY~LLLe~~ 172 (173)
|||+||+|||+++
T Consensus 145 QRi~rY~LLL~~l 157 (354)
T 2rgn_B 145 QRIMKYQLLLKDF 157 (354)
T ss_dssp HHHTSHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 9999999999864
No 20
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.95 E-value=1.8e-29 Score=224.46 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=130.8
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++||++||++|+.+.++|+.|+.... ++++..+++.||+|+++|+.+|+.|+.+|+.+...|.... +
T Consensus 208 Li~TE~~YV~~L~~l~~~y~~pL~~~~----~~l~~~~~~~IF~Ni~~I~~~h~~fL~~Le~~~~~~~~~~------~-- 275 (1049)
T 3ksy_A 208 FMAEIRQYIRELNLIIKVFREPFVSNS----KLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGS------P-- 275 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHCT----TTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHCCSSS------S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc----cCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccccCC------c--
Confidence 589999999999999999999998642 3689999999999999999999999999999998765421 0
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCc--hhhhHHHHHhcH--HHHHHHHHHHhcChhHHHHHHH-HhcCccccCCChhHhh
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLP--MLGIYQEYVRNH--HYSLQVLTECKQQPEFVQLLKR-LEMKPACQGRSLEMFL 155 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~--~~~~Y~~Y~~~~--~~a~~~l~~~~~~~~f~~~l~~-~~~~~~~~~l~l~~~L 155 (173)
...||++|.++.+ .|++|..||.|| +.|...++++.+++.|+.|+++ ++..+.|++++|.+||
T Consensus 276 ------------~~~IgdiFl~~~~~~~F~~Y~~Yc~ny~~~~a~~~l~~l~~~~~f~~fl~~~~~~~~~~~~l~L~s~L 343 (1049)
T 3ksy_A 276 ------------HPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLL 343 (1049)
T ss_dssp ------------SCCCHHHHHHHHHTTTTSHHHHHHHHHHCTTHHHHHHTTSSSTTHHHHHHHHCTTHHHHHHHTHHHHT
T ss_pred ------------hhhHHHHHHHHHHHhhhhHHHHHHHhhccHHHHHHHHHHhcChHHHHHHHHHHhhhhhhhcCChHHHH
Confidence 1269999999965 778999999996 8999999988899999999998 5666778899999999
Q ss_pred hhhhhhccchhhhhccc
Q psy10819 156 TFPMHQNAKKNFKKESY 172 (173)
Q Consensus 156 ~~PvQRi~rY~LLLe~~ 172 (173)
++|||||+||+|||+.+
T Consensus 344 ikPvQRI~rY~LLL~~L 360 (1049)
T 3ksy_A 344 LAPVYHCLHYFELLKQL 360 (1049)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 99999999999999864
No 21
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=97.48 E-value=0.00095 Score=50.62 Aligned_cols=135 Identities=16% Similarity=0.247 Sum_probs=99.6
Q ss_pred CchHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcc
Q psy10819 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYS 80 (173)
Q Consensus 1 Ll~TE~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~ 80 (173)
|++.|-+||.-|.-+.+ |-.-+... .++.++..+.+|.+++.+++.|+.|...|.++-..
T Consensus 195 liqdecnyvgvltslse-fseimtkk-----qilgpdvlkelfdhipvliqhhqkfisslqeakad-------------- 254 (518)
T 4gou_A 195 LIQDECNYVGVLTSLSE-FSEIMTKK-----QILGPDVLKELFDHIPVLIQHHQKFISSLQEAKAD-------------- 254 (518)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHT-----TCSCHHHHHHHHTTHHHHHHHHHHHHHHHTSTTGG--------------
T ss_pred HHHhhccceeehhhHHH-HHHHHHhh-----hccChHHHHHHHhhchHHHHHHHHHHHHHHHhhhh--------------
Confidence 35678889988877776 53333222 37889999999999999999999999998865321
Q ss_pred hhhhhhhhhhhccccHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHh-cC-----------hhHHHHHHHHhcCccccC
Q psy10819 81 YEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECK-QQ-----------PEFVQLLKRLEMKPACQG 148 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~-~~-----------~~f~~~l~~~~~~~~~~~ 148 (173)
..+|.-+..-..++-.|.-|+.+-+.....+.... .+ |...+|-++ +...++
T Consensus 255 -------------ekvgeklnsglhflvlyryylrhvpkniaklcsigmtdeievgrelyplpvieefdkq---qkmtkk 318 (518)
T 4gou_A 255 -------------EKVGEKLNSGLHFLVLYRYYLRHVPKNIAKLCSIGMTDEIEVGRELYPLPVIEEFDKQ---QKMTKK 318 (518)
T ss_dssp -------------GSHHHHHHHHTGGGGGGHHHHTTTTHHHHHHHHHHTSCGGGTTTTTCSHHHHHHHHHH---HHHHTS
T ss_pred -------------HHHHHhhccCceehHHHHHHHHhccHHHHHHccCCCcchhhccccccCcchHHHHHHH---HHHHHH
Confidence 25888888888888899999998888776666432 11 344455444 334567
Q ss_pred CChhHhhhhhhhhccchhhhhcc
Q psy10819 149 RSLEMFLTFPMHQNAKKNFKKES 171 (173)
Q Consensus 149 l~l~~~L~~PvQRi~rY~LLLe~ 171 (173)
++.-..|+-|--|+..|.--.++
T Consensus 319 msvlqmlvypyfrvrtyqayvdd 341 (518)
T 4gou_A 319 MSVLQMLVYPYFRVRTYQAYVDD 341 (518)
T ss_dssp CCHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHHHhhhhheehhHHHHHHH
Confidence 89999999999999988765543
No 22
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=90.19 E-value=0.69 Score=29.12 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=44.9
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhcCCCCCCCHHhHhhhccChHHHHHHHHHHHHHHHHH
Q psy10819 6 EEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSR 63 (173)
Q Consensus 6 ~~Yv~~L~~l~~~f~~pl~~~~~~~~~~l~~~~~~~iF~n~~~i~~~h~~fl~~L~~~ 63 (173)
..|++.|+.=+++|...++.....++++-++..+.++|-++..+ |..+++-++..
T Consensus 3 ~ef~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~M---H~~Ll~~i~~~ 57 (98)
T 3f1i_H 3 EQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGM---HPQLLELLNQL 57 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 46899999999999999998887799999999999999877655 66666655543
No 23
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=72.40 E-value=5.5 Score=18.88 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10819 47 ETVLFLHQIFLKGLTSRM 64 (173)
Q Consensus 47 ~~i~~~h~~fl~~L~~~~ 64 (173)
-+|+.+|..|++.+++-.
T Consensus 4 geiwklheeflkkfeell 21 (32)
T 1m3w_A 4 GEIWKLHEEFLKKFEELL 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 368899999999888755
No 24
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=33.04 E-value=44 Score=20.85 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=37.4
Q ss_pred cHHHHHHHhCchhhhHHHHHhcHHHHHHHHHHHhcChhHHHHHHHHhcCccccCCChhHhhhhhhhhc
Q psy10819 95 LLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQN 162 (173)
Q Consensus 95 ~ig~if~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~l~l~~~L~~PvQRi 162 (173)
+|..+|....++-..-..+...+..|+ ++|+|+..++-.-.+. |..-+-..+..+++.|+
T Consensus 6 ri~~lfie~LDFs~~~~af~~SW~~Al-------~~~eF~aIlrL~F~hi-~~~~~~~~f~~~~i~~l 65 (94)
T 3b4s_A 6 RIFKMFIEHLEFEKGLDAFSQSWIKAL-------EDSEFLAILRLLFHHI-VTSESAHEFAANGIDRL 65 (94)
T ss_dssp HHHHHHHTTSCCSSCHHHHHHHHHHHT-------TSHHHHHHHHHHHHHH-HHSCCHHHHHTCHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHH-------hCHHHHHHHHHHHHHH-HccCCccHHHHhHHHHH
Confidence 688888888865434444444443333 6888998888765432 33445566666666665
No 25
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=28.37 E-value=83 Score=22.41 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCCC
Q psy10819 45 NSETVLFLHQIFLKGLTSRMESWPT 69 (173)
Q Consensus 45 n~~~i~~~h~~fl~~L~~~~~~~~~ 69 (173)
++.+++++|+.+-+.+-+...+..+
T Consensus 180 y~~d~~~lHe~~s~~~ikkY~n~iP 204 (242)
T 3kae_A 180 YVSDSIEFHESLSPSLVKKYMEHVP 204 (242)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSTT
T ss_pred hhhhHHHHHHhccHHHHHHHHHhCC
Confidence 3456777777666555555444443
Done!