RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10819
         (173 letters)



>gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain.  Guanine nucleotide exchange
           factor for Rho/Rac/Cdc42-like GTPases Also called
           Dbl-homologous (DH) domain. It appears that pfam00169
           domains invariably occur C-terminal to RhoGEF/DH
           domains.
          Length = 179

 Score = 88.0 bits (219), Expect = 2e-22
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 29/160 (18%)

Query: 1   MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
           +++ E  Y+  +++LV  FL+P +     + P  S E++ +IF N E +L LHQ FL+ L
Sbjct: 5   LLQTERSYVRDLKILVEVFLKPLR-----ESPILSEEEIKTIFSNIEEILELHQEFLEEL 59

Query: 61  TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
             R+E WP +  +                       GD+F    P   +Y  Y  N+  +
Sbjct: 60  EERLEEWPDIQRI-----------------------GDIFLKFAPFFKVYSTYCSNYPRA 96

Query: 121 LQVLTECKQQPE-FVQLLKRLEMKPACQGRSLEMFLTFPM 159
           L++L + +++   F + LK  E  P C+G  L  FL  P+
Sbjct: 97  LELLKKLRKKNPRFAKFLKECEASPLCRGLDLNSFLIKPV 136


>gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for
           Rho/Rac/Cdc42-like GTPases.  Guanine nucleotide exchange
           factor for Rho/Rac/Cdc42-like GTPases Also called
           Dbl-homologous (DH) domain. It appears that PH domains
           invariably occur C-terminal to RhoGEF/DH domains.
           Improved coverage.
          Length = 180

 Score = 87.7 bits (218), Expect = 2e-22
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 26/159 (16%)

Query: 1   MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
           +++ E  Y+  +++LV  FL+P K          S  ++ ++F N E +   H+ FL  L
Sbjct: 5   LLQTERNYVRDLKLLVEVFLKPLKKELK----LLSPNELETLFGNIEEIYEFHRDFLDEL 60

Query: 61  TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
             R+E W   V                        +GD+F  L     IY EY  NH  +
Sbjct: 61  EERIEEWDDSVE----------------------RIGDVFLKLEEFFKIYSEYCSNHPDA 98

Query: 121 LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
           L++L + K+ P F + LK +E  P C+  +LE  L  P+
Sbjct: 99  LELLKKLKKNPRFQKFLKEIESSPQCRRLTLESLLLKPV 137


>gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for
           Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
           (DH) domain. It appears that PH domains invariably occur
           C-terminal to RhoGEF/DH domains.
          Length = 181

 Score = 68.9 bits (169), Expect = 4e-15
 Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 29/160 (18%)

Query: 1   MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
           +++ E  Y+  +++LV  FL+P          P S E+V  +F N E +   H+IFLK L
Sbjct: 8   LLQTERNYVRDLKLLVEVFLKPLDKELL----PLSPEEVELLFGNIEEIYEFHRIFLKSL 63

Query: 61  TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
             R+E W                            +GD+F  L P   IY EY  NH  +
Sbjct: 64  EERVEEWDKSGP----------------------RIGDVFLKLAPFFKIYSEYCSNHPDA 101

Query: 121 LQVLTECKQ-QPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
           L++L + K+    F + L++ E    C    LE  L  P+
Sbjct: 102 LELLKKLKKFNKFFQEFLEKAE--SECGRLKLESLLLKPV 139


>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
          Length = 333

 Score = 27.9 bits (63), Expect = 2.7
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 104 LPMLGIYQEYVR--NHHYSLQVLTECK 128
           LPM+   +E VR  N  Y   VL E +
Sbjct: 153 LPMIEQTREIVRRFNSLYGTDVLVEPE 179


>gnl|CDD|184713 PRK14502, PRK14502, bifunctional mannosyl-3-phosphoglycerate
           synthase/mannosyl-3 phosphoglycerate phosphatase;
           Provisional.
          Length = 694

 Score = 27.6 bits (61), Expect = 3.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 75  FSIPYSYEQCVNAYLVSEIGL 95
           F +P++Y++    YLV E+G+
Sbjct: 491 FRLPFAYDRVAGNYLVIELGM 511


>gnl|CDD|182178 PRK09977, PRK09977, putative Mg(2+) transport ATPase; Provisional.
          Length = 215

 Score = 26.2 bits (58), Expect = 9.1
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 20/107 (18%)

Query: 43  FLNSETVLFLHQIFLKGLTSRMESWPT--LVLVDFSIPYSYEQCVNAYLVSEIGLLGDLF 100
           F+ +  +L  +Q  +KGLT+  + W T  + +V  S  Y            E+G+ G + 
Sbjct: 79  FIGAGNILVRNQN-IKGLTTAADIWVTAAIGMVIGSGMY------------ELGIYGSV- 124

Query: 101 DMLLPMLGIYQE---YVRNHHYSLQVLTECKQQPEFVQLLKRLEMKP 144
            M L +L ++ +    + N HY LQ+          +   K+ ++K 
Sbjct: 125 -MTLLVLEVFHQLTFRLMNKHYHLQLTLVNGNVVSMLDWFKQQKIKT 170


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,491,614
Number of extensions: 749854
Number of successful extensions: 686
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 13
Length of query: 173
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 83
Effective length of database: 6,945,742
Effective search space: 576496586
Effective search space used: 576496586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)