RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10819
(173 letters)
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 102 bits (257), Expect = 2e-27
Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 26/160 (16%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++ EE Y+ +Q++ F +P + + ++V IF+N + ++ + LK L
Sbjct: 90 LIVTEENYVNDLQLVTEIFQKPLT-----ESELLTEKEVAMIFVNWKELIMCNIKLLKAL 144
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
R + V IG D+ LP + Y +
Sbjct: 145 RVRKKMSG-----------------EKMPVKMIG---DILSAQLPHMQPYIRFCSCQLNG 184
Query: 121 LQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
++ + + P+F + +KRL M P C+G L F+ PM
Sbjct: 185 AALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPM 224
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 100 bits (251), Expect = 5e-26
Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 28/159 (17%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
+ + EE+ +E +++ + P K + +++N IF ++++ LH+ L L
Sbjct: 27 LSQGEEDLIEDLKLAKKAYHDPML-----KLSIMTEQELNQIFGTLDSLIPLHEELLSQL 81
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
+ + +G + LP L Y Y N +
Sbjct: 82 RDVRKPDGS-----------------------TEHVGPILVGWLPCLSSYDSYCSNQVAA 118
Query: 121 LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
+L KQ L+R P + L FL P
Sbjct: 119 KALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPR 157
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 99.9 bits (248), Expect = 4e-25
Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 29/166 (17%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
+ +Y+ ++ +++ F PF S S DV +IF + L L +
Sbjct: 208 FMAEIRQYIRELNLIIKVFREPFV----SNSKLFSANDVENIFSRIVDIHELSVKLLGHI 263
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLG--IYQEYVRNHH 118
+E S L+G F+ L L Y+ Y R+
Sbjct: 264 EDTVEMTDE--------------------GSPHPLVGSCFEDLAEELAFDPYESYARDIL 303
Query: 119 YSL---QVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
+ L++ + + L E L L P++
Sbjct: 304 RPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYH 349
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 97.0 bits (241), Expect = 2e-24
Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 28/165 (16%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRP----FKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIF 56
++ +E+ Y+E +Q L F R + E++ + LHQ
Sbjct: 30 LLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIHDLHQGI 89
Query: 57 LKGLTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRN 116
L+ L R+ +W + V D+F + ++
Sbjct: 90 LEELEERLSNWESQQKV-----------------------ADVFLAREQGFDHHATHILQ 126
Query: 117 HHYSLQVLTE-CKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMH 160
L +L+E C P ++ E ++ + L +
Sbjct: 127 FDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKHRLLRVVQ 171
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 88.2 bits (218), Expect = 4e-21
Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 5 EEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRM 64
EE YM +Q++V F + + + ++ IF+N + ++ + LK L R
Sbjct: 39 EERYMADLQLVVEVFQKRMA-----ESGFLTEGEMALIFVNWKELIMSNTKLLKALRVRK 93
Query: 65 ESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVL 124
++ + V ++GD+ L + Y + +L
Sbjct: 94 KTGGEKMPVQ--------------------MIGDILAAELSHMQAYIRFCSCQLNGAALL 133
Query: 125 TECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMH 160
+ + +F + LK+L P C+G L FL PM
Sbjct: 134 QQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQ 170
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 86.2 bits (213), Expect = 2e-20
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 26/160 (16%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++ E +Y++ ++ + ++R + + S E + +IF N E + + F+K L
Sbjct: 126 ILSTERDYIKHLRDICEGYVRQCR----KRADMFSEEQLRTIFGNIEDIYRCQKAFVKAL 181
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
R + LG F IY EY NH +
Sbjct: 182 EQRFNRER----------------------PHLSELGACFLEHQADFQIYSEYCNNHPNA 219
Query: 121 LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMH 160
L+ + ++V + + SL+ FL P+
Sbjct: 220 CVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQ 259
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 81.8 bits (202), Expect = 5e-19
Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 23/156 (14%)
Query: 5 EEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRM 64
E ++ ++VL F + K K E++ +F N ++ +H + + +
Sbjct: 33 EASHLRTLRVLDLIFYQRMK-----KENLMPREELARLFPNLPELIEIHNSWCEAMKKLR 87
Query: 65 ESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVL 124
E P + + S++ L + + ++ +L+++
Sbjct: 88 EEGPIIKEI-----------------SDLMLARFDGPAREELQQVAAQFCSYQSIALELI 130
Query: 125 TECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
+++ F ++ E P C+ L + M
Sbjct: 131 KTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEM 166
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 81.8 bits (202), Expect = 5e-19
Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 26/160 (16%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++ E Y++ ++ + +L+ + +R S E + IF N E + F++ L
Sbjct: 49 IMSTERHYIKHLKDICEGYLKQCR----KRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDL 104
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
+ + + +G F IY EY NH +
Sbjct: 105 EKQYNNDD----------------------PHLSEIGPCFLEHQDGFWIYSEYCNNHLDA 142
Query: 121 LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMH 160
L++ + + + + +++ FL P+
Sbjct: 143 CMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQ 182
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 81.2 bits (200), Expect = 7e-19
Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 16/159 (10%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++E E Y++ + L+ +L+P + K + ++++ +F N ++ FLK L
Sbjct: 19 LLETERTYVKDLNCLMERYLKPLQ-----KETFLTQDELDVLFGNLTEMVEFQVEFLKTL 73
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
+ P L ++ + + LG F +Y + +H
Sbjct: 74 EDGVRLVPDLEKLEKVDQFK----------KVLFSLGGSFLYYADRFKLYSAFCASHTKV 123
Query: 121 LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
+VL + K F L + +LE +L P+
Sbjct: 124 PKVLVKAKTDTAFKAFLDAQNPRQ-QHSSTLESYLIKPI 161
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 80.3 bits (198), Expect = 2e-18
Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 23/156 (14%)
Query: 5 EEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRM 64
E ++ ++VL F + K K E++ +F N ++ +H + + +
Sbjct: 75 EASHLRTLRVLDLIFYQRMK-----KENLMPREELARLFPNLPELIEIHNSWCEAMKKLR 129
Query: 65 ESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVL 124
E P + + S++ L + + ++ +L+++
Sbjct: 130 EEGPIIKEI-----------------SDLMLARFDGPAREELQQVAAQFCSYQSIALELI 172
Query: 125 TECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
+++ F ++ E P C+ L + M
Sbjct: 173 KTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEM 208
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 76.2 bits (187), Expect = 6e-17
Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 32/160 (20%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
+ + EE+Y + + + FL+P + +D+ IF+N E +L +H FLK +
Sbjct: 205 IQQTEEKYTDTLGSIQQHFLKPL-------QRFLKPQDIEIIFINIEDLLRVHTHFLKEM 257
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
+ + L +F +Y Y +
Sbjct: 258 KEALGTP------------------------GAANLYQVFIKYKERFLVYGRYCSQVESA 293
Query: 121 LQVLTEC-KQQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
+ L + + L+ + +L L PM
Sbjct: 294 SKHLDRVAAAREDVQMKLEECSQRANNGRFTLRDLLMVPM 333
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 75.3 bits (185), Expect = 1e-16
Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 21/156 (13%)
Query: 5 EEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSRM 64
E ++ ++VL F + + S ++ IF N E +L LH + + +
Sbjct: 36 ERAHVRTLKVLDQVFYQRVS-----REGILSPSELRKIFSNLEDILQLHIGLNEQMKAVR 90
Query: 65 ESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVL 124
+ T V+ + E L + + N ++L+++
Sbjct: 91 KRNETSVIDQ---------------IGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMI 135
Query: 125 TECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
+++ F ++ E P C+ L+ + M
Sbjct: 136 KSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQM 171
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 75.1 bits (184), Expect = 2e-16
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 30/160 (18%)
Query: 5 EEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSR- 63
E ++ ++VL F +P + E++ +IF + + ++ +H +FL L R
Sbjct: 192 EAAHVRMLRVLHDLFFQPMA-----ECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRR 246
Query: 64 MESWPTLVLVDFSIPYSYEQCVNAYLVSEIG--LLGDLFDMLL-PMLGIYQEYVRNHHYS 120
ES L+ EIG LL I + ++
Sbjct: 247 QESGY--------------------LIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFA 286
Query: 121 LQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
L+ L +++ P F ++ E +P C+ L+ + M
Sbjct: 287 LEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEM 326
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 73.8 bits (181), Expect = 3e-16
Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 36/163 (22%)
Query: 5 EEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSR- 63
E ++ ++VL F +P + E++ +IF + + ++ +H +FL L R
Sbjct: 39 EAAHVRMLRVLHDLFFQPMA-----ECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRR 93
Query: 64 MESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLF------DMLLPMLGIYQEYVRNH 117
ES I +GD+ I +
Sbjct: 94 QESGYL-----------------------IEEIGDVLLARFDGAEGSWFQKISSRFCSRQ 130
Query: 118 HYSLQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
++L+ L +++ P F ++ E +P C+ L+ + M
Sbjct: 131 SFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEM 173
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 72.9 bits (179), Expect = 7e-16
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 32/160 (20%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
+ + EE+Y + + + F++P + +D+ +IF+N E + +H FLK L
Sbjct: 33 IQQTEEKYTDTLGSIQQHFMKPL-------QRFLKPQDMETIFVNIEELFSVHTHFLKEL 85
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
+ L +F +Y Y +
Sbjct: 86 KDALAGP------------------------GATTLYQVFIKYKERFLVYGRYCSQVESA 121
Query: 121 LQVLTEC-KQQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
+ L + + + L+ + +L L PM
Sbjct: 122 SKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPM 161
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR
{Homo sapiens} SCOP: a.87.1.1
Length = 209
Score = 66.5 bits (163), Expect = 3e-14
Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 32/160 (20%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++E E EY +++Q ++S +LRP + S +++ + N E + Q+ ++ L
Sbjct: 21 ILETENEYSKELQTVLSTYLRPLQ-----TSEKLSSANISYLMGNLEEICSFQQMLVQSL 75
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLF-DMLLPMLGIYQEYVRNHHY 119
+ +Q V G F +++ M +Y Y NH
Sbjct: 76 EECTKLPEA------------QQRV-----------GGCFLNLMPQMKTLYLTYCANHPS 112
Query: 120 SLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
++ VLTE E + ++ + L L+ P
Sbjct: 113 AVNVLTEHS--EELGEFMETK-GASSPGILVLTTGLSKPF 149
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 61.1 bits (148), Expect = 9e-12
Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 29/165 (17%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
+ +Y+ ++ +++ F PF S S DV +IF + L L +
Sbjct: 11 FMAEIRQYIRELNLIIKVFREPFV----SNSKLFSANDVENIFSRIVDIHELSVKLLGHI 66
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLG--IYQEYVRNHH 118
+E S V G F+ L L Y+ Y R+
Sbjct: 67 EDTVEMTDE---------GSPHPLV-----------GSCFEDLAEELAFDPYESYARDIL 106
Query: 119 YS---LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMH 160
+ L++ + + L E L L P++
Sbjct: 107 RPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVY 151
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 58.8 bits (142), Expect = 5e-11
Identities = 32/166 (19%), Positives = 62/166 (37%), Gaps = 33/166 (19%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKR-PPCSHEDVNSIFLN-SETVLFLHQIFLK 58
+++ E Y+E++ ++ + + N +F N E F ++IFL+
Sbjct: 19 LLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLR 78
Query: 59 GLTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHH 118
L S ++ L+G F + IY++Y +N
Sbjct: 79 ELESCIDCPE--------------------------LVGRCFLERMEEFQIYEKYCQNKP 112
Query: 119 YSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQNAK 164
S + +C P F + K+L+ K SL+ +L P+ + K
Sbjct: 113 RSESLWRQCSDCPFFQECQKKLDHKL-----SLDSYLLKPVQRITK 153
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 55.3 bits (133), Expect = 9e-10
Identities = 25/160 (15%), Positives = 46/160 (28%), Gaps = 36/160 (22%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLH-QIFLKG 59
+VE E+ Y++ + +V ++ + P +F N + + H FL+
Sbjct: 20 LVETEKMYVDDLGQIVEGYMATMA---AQGVPESLRGRDRIVFGNIQQIYEWHRDYFLQE 76
Query: 60 LTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHY 119
L ++ L LF L +Y Y +N
Sbjct: 77 LQRCLKDPDWL--------------------------AQLFIKHERRLHMYVVYCQNKPK 110
Query: 120 SLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
S V++E + L L P+
Sbjct: 111 SEHVVSEFGDS------YFEELRQQLGHRLQLNDLLIKPV 144
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 52.9 bits (127), Expect = 5e-09
Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 34/160 (21%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQ-IFLKG 59
+++ E+ Y+ ++ + +L PP IF N + + H IFLK
Sbjct: 17 LIQTEKAYVRDLRECMDTYLWEMTSGVEEI-PPGIVNKELIIFGNMQEIYEFHNNIFLKE 75
Query: 60 LTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHY 119
L + + G F +Y Y +N
Sbjct: 76 LEKYEQLPEDV--------------------------GHCFVTWADKFQMYVTYCKNKPD 109
Query: 120 SLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPM 159
S Q++ E ++ + S+ +L P+
Sbjct: 110 STQLILEH-----AGSYFDEIQQRHGL-ANSISSYLIKPV 143
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.23
Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 75/183 (40%)
Query: 4 AEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTSR 63
+ + M V+ K + K+P E+ + + I+L+ L +
Sbjct: 397 FDVIKSDVMVVVNKLH----KYSLVEKQPK-------------ESTISIPSIYLE-LKVK 438
Query: 64 MESWPTL--VLVD-FSIPYSYEQ------CVNAYLVSEIG------LLGDLFDM------ 102
+E+ L +VD ++IP +++ ++ Y S IG + +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 103 ------------------------LLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLK 138
L L Y+ Y+ ++ P++ +L+
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND------------PKYERLVN 546
Query: 139 RLE 141
+
Sbjct: 547 AIL 549
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.27
Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 63/148 (42%)
Query: 6 EEYMEQMQVLVS---CFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGLTS 62
++Y E+++ L + ++ +++ ++F +GL
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA-----------EKVFTQGL-- 213
Query: 63 RMESW-------PTLVLVDF--SIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQ-- 111
+ W P D+ SIP S P++G+ Q
Sbjct: 214 NILEWLENPSNTPD---KDYLLSIPIS-----------------------CPLIGVIQLA 247
Query: 112 EYV---RNHHYS-------LQVLTECKQ 129
YV + ++ L+ T Q
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Score = 30.0 bits (67), Expect = 0.41
Identities = 28/121 (23%), Positives = 37/121 (30%), Gaps = 39/121 (32%)
Query: 25 MAASSKRP-PCSHEDVNSIFLNSETVLF----LHQIFLKGLTSRMESWPTLVLVDFSIPY 79
M A S RP SH + + L F L + F K L PT P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPE-----PTEGFAADDEP- 54
Query: 80 SYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYSLQVLTECKQQPEFVQLLKR 139
+ L+G F LG YV + L E + +F Q+L
Sbjct: 55 ----------TTPAELVGK-F------LG----YVSS-------LVEPSKVGQFDQVLNL 86
Query: 140 L 140
Sbjct: 87 C 87
Score = 26.9 bits (59), Expect = 4.1
Identities = 31/161 (19%), Positives = 44/161 (27%), Gaps = 67/161 (41%)
Query: 43 FLNSETVLFLHQIFLKGLTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDM 102
F S + +F G+ E++P L P E + G+
Sbjct: 292 FFVS-VRKAITVLFFIGVRCY-EAYPNTSLP----PSILEDSLEN----NEGVPS----- 336
Query: 103 LLPMLGI-------YQEYVR--NHHY--------SLQ------VLTECKQQPE----FVQ 135
PML I Q+YV N H SL V++ P+
Sbjct: 337 --PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---GPPQSLYGLNL 391
Query: 136 LLKRL--------------EMKPACQGRSLEMFL--TFPMH 160
L++ E K R FL P H
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNR----FLPVASPFH 428
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.7
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 15/27 (55%)
Query: 128 KQQPEFVQLLKRLE--MK-------PA 145
KQ LK+L+ +K PA
Sbjct: 19 KQA------LKKLQASLKLYADDSAPA 39
Score = 27.2 bits (59), Expect = 1.9
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 5/21 (23%)
Query: 57 LKGLTSRM-----ESWPTLVL 72
LK L + + +S P L +
Sbjct: 22 LKKLQASLKLYADDSAPALAI 42
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase,
farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A
{Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A*
2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A*
2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A*
2z52_A* 2z78_A* 2z7h_A* ...
Length = 340
Score = 26.6 bits (59), Expect = 4.6
Identities = 6/43 (13%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 14 VLVSCFL--RPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQ 54
+ + ++ R ++ + + ++ +IF +E ++ LH+
Sbjct: 105 INTANYMYFRAMQLVSQLTTKEPLYHNLITIF--NEELINLHR 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.409
Gapped
Lambda K H
0.267 0.0464 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,522,520
Number of extensions: 131579
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 30
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.2 bits)