RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10819
(173 letters)
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 67.1 bits (163), Expect = 7e-15
Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 26/162 (16%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++ EE Y+ +Q++ F +P + + ++V IF+N + ++ + LK L
Sbjct: 17 LIVTEENYVNDLQLVTEIFQKPLM-----ESELLTEKEVAMIFVNWKELIMCNIKLLKAL 71
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
R + + ++GD+ LP + Y +
Sbjct: 72 RVRKKMS--------------------GEKMPVKMIGDILSAQLPHMQPYIRFCSRQLNG 111
Query: 121 LQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
++ + + P+F + +KRLEM P C+G L F+ PM +
Sbjct: 112 AALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQR 153
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 206
Score = 64.8 bits (157), Expect = 5e-14
Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 16/161 (9%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++E E Y++ + L+ +L+P + K + ++++ +F N ++ FLK L
Sbjct: 15 LLETERTYVKDLNCLMERYLKPLQ-----KETFLTQDELDVLFGNLTEMVEFQVEFLKTL 69
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
+ P L + + LG F +Y + +H
Sbjct: 70 EDGVRLVPDL----------EKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKV 119
Query: 121 LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
+VL + K F L +LE +L P+ +
Sbjct: 120 PKVLVKAKTDTAFKAFLDAQN-PRQQHSSTLESYLIKPIQR 159
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 57.8 bits (139), Expect = 2e-11
Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 32/162 (19%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
+ + EE+Y + + + F++P + +D+ +IF+N E + +H FLK L
Sbjct: 35 IQQTEEKYTDTLGSIQQHFMKPL-------QRFLKPQDMETIFVNIEELFSVHTHFLKEL 87
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
+ L +F +Y Y +
Sbjct: 88 KDALAGPGATT------------------------LYQVFIKYKERFLVYGRYCSQVESA 123
Query: 121 LQVLTECKQQPEFVQLL-KRLEMKPACQGRSLEMFLTFPMHQ 161
+ L + E VQ+ + + +L L PM +
Sbjct: 124 SKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQR 165
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 57.9 bits (139), Expect = 3e-11
Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 21/162 (12%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
+ E ++ ++VL F + + S ++ IF N E +L LH + +
Sbjct: 30 LFYTERAHVRTLKVLDQVFYQRVS-----REGILSPSELRKIFSNLEDILQLHIGLNEQM 84
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
+ + T V+ + E L + + N ++
Sbjct: 85 KAVRKRNETSVIDQ---------------IGEDLLTWFSGPGEEKLKHAAATFCSNQPFA 129
Query: 121 LQVLTECKQQ-PEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
L+++ +++ F ++ E P C+ L+ + M +
Sbjct: 130 LEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQR 171
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 203
Score = 56.7 bits (136), Expect = 5e-11
Identities = 24/161 (14%), Positives = 55/161 (34%), Gaps = 26/161 (16%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++ E Y++ ++ + +L+ + +R S E + IF N E + F++ L
Sbjct: 22 IMSTERHYIKHLKDICEGYLKQCR----KRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDL 77
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
+ + + +G F IY EY NH +
Sbjct: 78 EKQYNNDD----------------------PHLSEIGPCFLEHQDGFWIYSEYCNNHLDA 115
Query: 121 LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
L++ + + + + +++ FL P+ +
Sbjct: 116 CMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQK 156
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 56.3 bits (135), Expect = 6e-11
Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 33/163 (20%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSK-RPPCSHEDVNSIFLNSETVLFLH-QIFLK 58
+++ E Y+E++ ++ + + N +F N E + H +IFL+
Sbjct: 17 LLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLR 76
Query: 59 GLTSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHH 118
L S ++ L+G F + IY++Y +N
Sbjct: 77 ELESCIDCPE--------------------------LVGRCFLERMEEFQIYEKYCQNKP 110
Query: 119 YSLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
S + +C P F + K+L SL+ +L P+ +
Sbjct: 111 RSESLWRQCSDCPFFQECQKKL-----DHKLSLDSYLLKPVQR 148
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 56.6 bits (136), Expect = 6e-11
Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 32/162 (19%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
++E E EY +++Q ++S +LRP + S +++ + N E + Q+ ++ L
Sbjct: 21 ILETENEYSKELQTVLSTYLRPLQ-----TSEKLSSANISYLMGNLEEICSFQQMLVQSL 75
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLP-MLGIYQEYVRNHHY 119
+ +G F L+P M +Y Y NH
Sbjct: 76 EECTKLPE-----------------------AQQRVGGCFLNLMPQMKTLYLTYCANHPS 112
Query: 120 SLQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
++ VLTE ++ + + + L L+ P +
Sbjct: 113 AVNVLTEHSEE---LGEFMETKGASSPGILVLTTGLSKPFMR 151
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 55.9 bits (134), Expect = 8e-11
Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 29/166 (17%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
+ +Y+ ++ +++ F PF S S DV +IF + L L +
Sbjct: 11 FMAEIRQYIRELNLIIKVFREPFV----SNSKLFSANDVENIFSRIVDIHELSVKLLGHI 66
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLG--IYQEYVRNHH 118
+E S L+G F+ L L Y+ Y R+
Sbjct: 67 EDTVEMTDEG--------------------SPHPLVGSCFEDLAEELAFDPYESYARDIL 106
Query: 119 YS---LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
+ L++ + + L E L L P++
Sbjct: 107 RPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYH 152
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 46.6 bits (110), Expect = 1e-07
Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 32/161 (19%)
Query: 1 MVEAEEEYMEQMQVLVSCFLRPFKMAASSKRPPCSHEDVNSIFLNSETVLFLHQIFLKGL 60
+++ E+ Y+ ++ + +L PP IF N + + H
Sbjct: 11 LIQTEKAYVRDLRECMDTYLWEMTSGVEEI-PPGIVNKELIIFGNMQEIYEFHNNIFLKE 69
Query: 61 TSRMESWPTLVLVDFSIPYSYEQCVNAYLVSEIGLLGDLFDMLLPMLGIYQEYVRNHHYS 120
+ E P V G F +Y Y +N S
Sbjct: 70 LEKYEQLPEDV-------------------------GHCFVTWADKFQMYVTYCKNKPDS 104
Query: 121 LQVLTECKQQPEFVQLLKRLEMKPACQGRSLEMFLTFPMHQ 161
Q++ E ++ + S+ +L P+ +
Sbjct: 105 TQLILEHAGSY-----FDEIQQRHGLA-NSISSYLIKPVQR 139
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.137 0.409
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,305
Number of extensions: 25854
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 9
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.6 bits)