BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10821
         (200 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
          Length = 853

 Score = 28.5 bits (62), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 62  CHSWVYDKTYYKTSR 76
           C+SWVY+  +YKT R
Sbjct: 141 CNSWVYNSKHYKTDR 155


>pdb|2Y7T|A Chain A, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|B Chain B, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|C Chain C, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|D Chain D, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|E Chain E, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|F Chain F, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|G Chain G, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|H Chain H, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|I Chain I, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|J Chain J, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|K Chain K, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|L Chain L, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|M Chain M, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|N Chain N, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|O Chain O, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|P Chain P, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|Q Chain Q, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|R Chain R, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|S Chain S, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7T|T Chain T, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|A Chain A, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|B Chain B, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|C Chain C, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|D Chain D, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|E Chain E, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|F Chain F, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|G Chain G, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|H Chain H, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|I Chain I, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|J Chain J, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|K Chain K, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|L Chain L, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|M Chain M, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|N Chain N, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|O Chain O, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|P Chain P, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|Q Chain Q, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|R Chain R, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|S Chain S, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7U|T Chain T, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|A Chain A, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|B Chain B, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|C Chain C, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|D Chain D, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|E Chain E, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|F Chain F, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|G Chain G, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|H Chain H, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|I Chain I, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|J Chain J, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|K Chain K, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|L Chain L, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|M Chain M, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|N Chain N, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|O Chain O, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|P Chain P, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|Q Chain Q, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|R Chain R, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|S Chain S, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2Y7V|T Chain T, X-Ray Structure Of The Grapevine Fanleaf Virus
 pdb|2YI2|A Chain A, Grapevine Fanleaf Virus
 pdb|2YI2|B Chain B, Grapevine Fanleaf Virus
 pdb|2YI2|C Chain C, Grapevine Fanleaf Virus
 pdb|2YI2|D Chain D, Grapevine Fanleaf Virus
 pdb|2YI2|E Chain E, Grapevine Fanleaf Virus
 pdb|2YI2|F Chain F, Grapevine Fanleaf Virus
 pdb|2YI2|G Chain G, Grapevine Fanleaf Virus
 pdb|2YI2|H Chain H, Grapevine Fanleaf Virus
 pdb|2YI2|I Chain I, Grapevine Fanleaf Virus
 pdb|2YI2|J Chain J, Grapevine Fanleaf Virus
 pdb|2YI2|K Chain K, Grapevine Fanleaf Virus
 pdb|2YI2|L Chain L, Grapevine Fanleaf Virus
 pdb|2YI2|M Chain M, Grapevine Fanleaf Virus
 pdb|2YI2|N Chain N, Grapevine Fanleaf Virus
 pdb|2YI2|O Chain O, Grapevine Fanleaf Virus
 pdb|2YI2|P Chain P, Grapevine Fanleaf Virus
 pdb|2YI2|Q Chain Q, Grapevine Fanleaf Virus
 pdb|2YI2|R Chain R, Grapevine Fanleaf Virus
 pdb|2YI2|S Chain S, Grapevine Fanleaf Virus
 pdb|2YI2|T Chain T, Grapevine Fanleaf Virus
 pdb|2YI3|A Chain A, Grapevine Fanleaf Virus
 pdb|2YI3|B Chain B, Grapevine Fanleaf Virus
 pdb|2YI3|C Chain C, Grapevine Fanleaf Virus
 pdb|2YI3|D Chain D, Grapevine Fanleaf Virus
 pdb|2YI3|E Chain E, Grapevine Fanleaf Virus
 pdb|2YI3|F Chain F, Grapevine Fanleaf Virus
 pdb|2YI3|G Chain G, Grapevine Fanleaf Virus
 pdb|2YI3|H Chain H, Grapevine Fanleaf Virus
 pdb|2YI3|I Chain I, Grapevine Fanleaf Virus
 pdb|2YI3|J Chain J, Grapevine Fanleaf Virus
 pdb|2YI3|K Chain K, Grapevine Fanleaf Virus
 pdb|2YI3|L Chain L, Grapevine Fanleaf Virus
 pdb|2YI3|M Chain M, Grapevine Fanleaf Virus
 pdb|2YI3|N Chain N, Grapevine Fanleaf Virus
 pdb|2YI3|O Chain O, Grapevine Fanleaf Virus
 pdb|2YI3|P Chain P, Grapevine Fanleaf Virus
 pdb|2YI3|Q Chain Q, Grapevine Fanleaf Virus
 pdb|2YI3|R Chain R, Grapevine Fanleaf Virus
 pdb|2YI3|S Chain S, Grapevine Fanleaf Virus
 pdb|2YI3|T Chain T, Grapevine Fanleaf Virus
 pdb|2YI4|A Chain A, Grapevine Fanleaf Virus
 pdb|2YI4|B Chain B, Grapevine Fanleaf Virus
 pdb|2YI4|C Chain C, Grapevine Fanleaf Virus
 pdb|2YI4|D Chain D, Grapevine Fanleaf Virus
 pdb|2YI4|E Chain E, Grapevine Fanleaf Virus
 pdb|2YI4|F Chain F, Grapevine Fanleaf Virus
 pdb|2YI4|G Chain G, Grapevine Fanleaf Virus
 pdb|2YI4|H Chain H, Grapevine Fanleaf Virus
 pdb|2YI4|I Chain I, Grapevine Fanleaf Virus
 pdb|2YI4|J Chain J, Grapevine Fanleaf Virus
 pdb|2YI4|K Chain K, Grapevine Fanleaf Virus
 pdb|2YI4|L Chain L, Grapevine Fanleaf Virus
 pdb|2YI4|M Chain M, Grapevine Fanleaf Virus
 pdb|2YI4|N Chain N, Grapevine Fanleaf Virus
 pdb|2YI4|O Chain O, Grapevine Fanleaf Virus
 pdb|2YI4|P Chain P, Grapevine Fanleaf Virus
 pdb|2YI4|Q Chain Q, Grapevine Fanleaf Virus
 pdb|2YI4|R Chain R, Grapevine Fanleaf Virus
 pdb|2YI4|S Chain S, Grapevine Fanleaf Virus
 pdb|2YI4|T Chain T, Grapevine Fanleaf Virus
          Length = 504

 Score = 28.1 bits (61), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 21  EINGTVLDWNSTEVLTWIHKKDDGKFE 47
           E NGT +DWN       ++ ++DG FE
Sbjct: 254 EWNGTTMDWNELFKYPGVYVEEDGSFE 280


>pdb|2Y26|A Chain A, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|B Chain B, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|C Chain C, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|D Chain D, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|E Chain E, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|F Chain F, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|G Chain G, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|H Chain H, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|I Chain I, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|J Chain J, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|K Chain K, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|L Chain L, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|M Chain M, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|N Chain N, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|O Chain O, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|P Chain P, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|Q Chain Q, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|R Chain R, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|S Chain S, Transmission Defective Mutant Of Grapevine Fanleaf Virus
 pdb|2Y26|T Chain T, Transmission Defective Mutant Of Grapevine Fanleaf Virus
          Length = 504

 Score = 28.1 bits (61), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 21  EINGTVLDWNSTEVLTWIHKKDDGKFE 47
           E NGT +DWN       ++ ++DG FE
Sbjct: 254 EWNGTTMDWNELFKYPGVYVEEDGSFE 280


>pdb|4GOS|A Chain A, Crystal Structure Of Human B7-H4 Igv-Like Domain
          Length = 125

 Score = 27.7 bits (60), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 18 PDVEINGTVLDWNSTEVLTWIHKKDDGKFESCRMFDAFTNKT 59
          PD++++  V+ W    VL  +H+  +GK E     + F  +T
Sbjct: 31 PDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRT 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.137    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,122,761
Number of Sequences: 62578
Number of extensions: 246913
Number of successful extensions: 513
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 4
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)