Query psy10821
Match_columns 200
No_of_seqs 230 out of 1913
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 19:23:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.6 1.9E-15 6.4E-20 130.1 6.1 132 44-175 328-476 (491)
2 3o7q_A L-fucose-proton symport 99.0 2.3E-10 7.8E-15 96.6 6.0 124 44-167 77-236 (438)
3 2gfp_A EMRD, multidrug resista 98.9 1.1E-10 3.8E-15 96.9 -0.1 124 44-167 51-180 (375)
4 4gc0_A D-xylose-proton symport 98.8 2.2E-09 7.7E-14 92.0 5.1 123 44-166 71-224 (491)
5 1pw4_A Glycerol-3-phosphate tr 98.8 2.7E-09 9.3E-14 90.1 3.6 123 45-167 79-212 (451)
6 2cfq_A Lactose permease; trans 98.7 3.2E-09 1.1E-13 90.0 2.5 126 46-171 277-409 (417)
7 4aps_A DI-OR tripeptide H+ sym 98.7 2.5E-08 8.4E-13 85.6 7.1 118 44-161 70-195 (491)
8 1pw4_A Glycerol-3-phosphate tr 98.5 4.7E-08 1.6E-12 82.5 4.0 118 46-163 306-434 (451)
9 2xut_A Proton/peptide symporte 98.5 1.7E-07 5.8E-12 81.0 7.2 118 44-161 70-197 (524)
10 4aps_A DI-OR tripeptide H+ sym 98.3 1E-06 3.5E-11 75.4 7.2 92 77-168 385-478 (491)
11 3o7q_A L-fucose-proton symport 98.2 2.1E-06 7.3E-11 72.0 6.2 115 45-162 312-432 (438)
12 2xut_A Proton/peptide symporte 97.7 8.8E-05 3E-09 63.9 7.4 97 77-173 404-514 (524)
13 2cfq_A Lactose permease; trans 96.0 4E-05 1.4E-09 64.6 -8.8 122 44-165 59-191 (417)
14 2gfp_A EMRD, multidrug resista 96.0 0.0029 9.8E-08 51.8 2.6 52 82-134 295-346 (375)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.57 E-value=1.9e-15 Score=130.10 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=90.2
Q ss_pred CeeeEEEEEecccchhHHHHHhHhhhhh------hccccchHH--HHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHH
Q psy10821 44 GKFESCRMFDAFTNKTMTCHSWVYDKTY------YKTSRTMEY--ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTG 115 (200)
Q Consensus 44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg 115 (200)
+.++++.++||+|||+.+..+....... ........+ .+...+....+..+..++.+.+.+|+||+++|+++
T Consensus 328 ~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~ 407 (491)
T 4gc0_A 328 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA 407 (491)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHH
T ss_pred HHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHH
Confidence 4456678899999997665332211111 011111222 22233333444556667889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-H-------hhcCchHHHHHHHHHHHHHHHHH-hhcccCCCCCchHHHH
Q psy10821 116 LGVGSMCARLSAALTPLIGL-M-------DSFDKRIPTTIFATITLMSGILS-TFLPETWNMVCDRRWM 175 (200)
Q Consensus 116 ~~l~~~~~~i~~~~~p~i~~-~-------~~~~~~~~~~~~~~~~~~~~i~~-~~lpet~~~~l~~~~~ 175 (200)
.|++..++++++.+.+++.. + ...+....+++++++++++.+.. +++||||||++||.++
T Consensus 408 ~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 408 LAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHH
Confidence 99999999999998888762 2 23455667788888888877665 5579999999998654
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.03 E-value=2.3e-10 Score=96.59 Aligned_cols=124 Identities=11% Similarity=0.125 Sum_probs=90.1
Q ss_pred CeeeEEEEEecccchhHHHHHhHhhh---hhh---ccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821 44 GKFESCRMFDAFTNKTMTCHSWVYDK---TYY---KTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG 117 (200)
Q Consensus 44 G~~~~~~l~Dr~GRr~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~ 117 (200)
+.+..+.+.||+|||+.+..+..... ... ....+.+.+....++.+++.+...+....+++|.+|.+.|++..+
T Consensus 77 ~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 156 (438)
T 3o7q_A 77 IPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLN 156 (438)
T ss_dssp THHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHH
T ss_pred HHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHH
Confidence 55667889999999987664433222 222 234556667777888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-H-H-hhcC-------------------------chHHHHHHHHHHHHHHHHHhh--cccCCC
Q psy10821 118 VGSMCARLSAALTPLIG-L-M-DSFD-------------------------KRIPTTIFATITLMSGILSTF--LPETWN 167 (200)
Q Consensus 118 l~~~~~~i~~~~~p~i~-~-~-~~~~-------------------------~~~~~~~~~~~~~~~~i~~~~--lpet~~ 167 (200)
+......++..++|.+. . . ...+ |+.++++.++..++..+..++ .||++.
T Consensus 157 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 157 LAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 99999999999999988 3 3 3333 566776666666655544443 466544
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.92 E-value=1.1e-10 Score=96.92 Aligned_cols=124 Identities=12% Similarity=0.089 Sum_probs=90.7
Q ss_pred CeeeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHH
Q psy10821 44 GKFESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGS 120 (200)
Q Consensus 44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~ 120 (200)
+.+..+.+.||+|||+.+..+...... ......+.+......++.+++.+...+....+.+|.+|.+.|++..++..
T Consensus 51 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (375)
T 2gfp_A 51 SQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLN 130 (375)
T ss_dssp HHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHH
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHH
Confidence 445668899999999766543322211 11123345556666777778888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-H-HhhcCchHHHHHHHHHHHHHHH-HHhhcccCCC
Q psy10821 121 MCARLSAALTPLIG-L-MDSFDKRIPTTIFATITLMSGI-LSTFLPETWN 167 (200)
Q Consensus 121 ~~~~i~~~~~p~i~-~-~~~~~~~~~~~~~~~~~~~~~i-~~~~lpet~~ 167 (200)
....++..++|.+. . .+..+|+..+.+.++..++..+ ....+||++.
T Consensus 131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 98889999999998 3 4456788888888777777666 3445677643
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.84 E-value=2.2e-09 Score=91.97 Aligned_cols=123 Identities=13% Similarity=0.008 Sum_probs=86.2
Q ss_pred CeeeEEEEEecccchhHHHHHhHhhhhh---h------------------ccccchHHHHHHHHHHHHHHhhhhhhHHHh
Q psy10821 44 GKFESCRMFDAFTNKTMTCHSWVYDKTY---Y------------------KTSRTMEYILYIVFFGKFCIAGSFAVIYNY 102 (200)
Q Consensus 44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (200)
|.++.+.+.||+|||+.+..+....... . ....+...+++.+++.+++.++..+..+.+
T Consensus 71 G~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~ 150 (491)
T 4gc0_A 71 GGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMY 150 (491)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788999999997765432211111 0 023456677888999999999999999999
Q ss_pred hccccchhHHhHHHHHHHHHHHHHHHHHHHHHH-H-h--------hcCchHHHHHHHHHHHHHHHHHhhcccCC
Q psy10821 103 SAELFPTVLRNTGLGVGSMCARLSAALTPLIGL-M-D--------SFDKRIPTTIFATITLMSGILSTFLPETW 166 (200)
Q Consensus 103 ~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~~-~-~--------~~~~~~~~~~~~~~~~~~~i~~~~lpet~ 166 (200)
++|..|++.|++..++......++...++.+.. . . ...|+..+....+..++..+..++.||+.
T Consensus 151 i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp 224 (491)
T 4gc0_A 151 IAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESP 224 (491)
T ss_dssp HHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCH
T ss_pred HHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCCh
Confidence 999999999999999988777777776666652 1 1 11234445555555566666667789874
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.78 E-value=2.7e-09 Score=90.15 Aligned_cols=123 Identities=10% Similarity=0.120 Sum_probs=92.5
Q ss_pred eeeEEEEEecccchhHHHHHhHhh---hhhhcc----ccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821 45 KFESCRMFDAFTNKTMTCHSWVYD---KTYYKT----SRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG 117 (200)
Q Consensus 45 ~~~~~~l~Dr~GRr~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~ 117 (200)
.+..+.+.||+|||+.+..+.... ...... ..+.+.+....++.+++.+...+....+++|.+|.+.|+++.+
T Consensus 79 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 158 (451)
T 1pw4_A 79 KFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS 158 (451)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHH
Confidence 345678899999997765433322 112222 3455566777888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH--HHhhcC-chHHHHHHHHHHHHHHHHH-hhcccCCC
Q psy10821 118 VGSMCARLSAALTPLIG--LMDSFD-KRIPTTIFATITLMSGILS-TFLPETWN 167 (200)
Q Consensus 118 l~~~~~~i~~~~~p~i~--~~~~~~-~~~~~~~~~~~~~~~~i~~-~~lpet~~ 167 (200)
+......++..++|.+. +....+ |+..+++.++++++..+.. +++||++.
T Consensus 159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 99988889999999988 366677 8998988888877765544 45676543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.73 E-value=3.2e-09 Score=90.03 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=80.9
Q ss_pred eeEEEEEecccchhHHHHHhHhhhh---hhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHH-
Q psy10821 46 FESCRMFDAFTNKTMTCHSWVYDKT---YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSM- 121 (200)
Q Consensus 46 ~~~~~l~Dr~GRr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~- 121 (200)
+..+.+.||+|||+.+..+...... ......+........++..+.........+.+.+|.+|++.|+++.++.++
T Consensus 277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 356 (417)
T 2cfq_A 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF 356 (417)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 3456778999999766543322221 111122333333333333344444455668899999999999999999754
Q ss_pred HHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh-cccCCCCCch
Q psy10821 122 CARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF-LPETWNMVCD 171 (200)
Q Consensus 122 ~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-lpet~~~~l~ 171 (200)
...+++.++|.+. +.+..+....+.+.+++++++.+..+. .||++..++-
T Consensus 357 ~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~ 409 (417)
T 2cfq_A 357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp THHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCSS
T ss_pred HHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHHH
Confidence 4458999999988 355556666777777777777666544 5887766654
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.69 E-value=2.5e-08 Score=85.56 Aligned_cols=118 Identities=10% Similarity=0.016 Sum_probs=87.6
Q ss_pred CeeeEEEEEec-ccchhHHHHHhHhhh---hhhccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhH--HhHHHH
Q psy10821 44 GKFESCRMFDA-FTNKTMTCHSWVYDK---TYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVL--RNTGLG 117 (200)
Q Consensus 44 G~~~~~~l~Dr-~GRr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~v--R~tg~~ 117 (200)
+.+..+.+.|| +|||+.+..+..... .......+.+.+....++.+++.+...+....+++|.+|.+. |+++.+
T Consensus 70 ~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 149 (491)
T 4aps_A 70 SGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFS 149 (491)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeeh
Confidence 44667889999 899987764433222 222234556667777778888888889999999999999988 666777
Q ss_pred HHHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh
Q psy10821 118 VGSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF 161 (200)
Q Consensus 118 l~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (200)
+.+....++..++|.+. +.+..+|+..+++.++..+++.+..++
T Consensus 150 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 150 IFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77788889999999988 356688888888877777666655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.52 E-value=4.7e-08 Score=82.50 Aligned_cols=118 Identities=17% Similarity=0.102 Sum_probs=84.0
Q ss_pred eeEEEEEecc--cchhHHHHHhHh----hhhhhccc--cchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHH
Q psy10821 46 FESCRMFDAF--TNKTMTCHSWVY----DKTYYKTS--RTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLG 117 (200)
Q Consensus 46 ~~~~~l~Dr~--GRr~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~ 117 (200)
++.+.+.||+ |||.....+... ........ .+........++.+++....++....+..|.+|++.|+++.|
T Consensus 306 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 385 (451)
T 1pw4_A 306 LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 385 (451)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHH
Confidence 3446788999 998665432221 11111112 233344445555566667777788899999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhhcc
Q psy10821 118 VGSMCARL-SAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTFLP 163 (200)
Q Consensus 118 l~~~~~~i-~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~lp 163 (200)
+......+ ++.++|.+. +.+..++...+++.+++.+++.++.++.+
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 999999998 45667888888888888888777666553
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.51 E-value=1.7e-07 Score=81.04 Aligned_cols=118 Identities=8% Similarity=0.059 Sum_probs=85.4
Q ss_pred CeeeEEEEEecc-cchhHHHHHhHhhh---hhhcccc-chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHH
Q psy10821 44 GKFESCRMFDAF-TNKTMTCHSWVYDK---TYYKTSR-TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGV 118 (200)
Q Consensus 44 G~~~~~~l~Dr~-GRr~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l 118 (200)
+.+..+.+.||+ |||+.+..+..... ....... +.+.+....++.+++.+...+....+.+|.+|.+.|++..+.
T Consensus 70 ~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 149 (524)
T 2xut_A 70 FPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA 149 (524)
T ss_dssp THHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence 556678899999 99977654333222 1112233 555666667777788888889999999999999999776665
Q ss_pred ---HHHHHHHHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHhh
Q psy10821 119 ---GSMCARLSAALTPLIG--LMDSFDKRIPTTIFATITLMSGILSTF 161 (200)
Q Consensus 119 ---~~~~~~i~~~~~p~i~--~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (200)
.+....++..++|.+. +.+..+|...+.+.++..+++.+..++
T Consensus 150 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 150 FDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778999999887 355678888888877777666655544
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.31 E-value=1e-06 Score=75.40 Aligned_cols=92 Identities=12% Similarity=0.089 Sum_probs=66.4
Q ss_pred chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHHH
Q psy10821 77 TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG-LMDSFDKRIPTTIFATITLMS 155 (200)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~ 155 (200)
+..+.....++.+++.....+..+.+..|.+|++.|+++.|+......+++.++|.+. ...+.+....+..++++++++
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVL 464 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3444555555666666777788899999999999999999999999999999999998 455666667777777777776
Q ss_pred HHHHhhc-ccCCCC
Q psy10821 156 GILSTFL-PETWNM 168 (200)
Q Consensus 156 ~i~~~~l-pet~~~ 168 (200)
.+..++. |+.+++
T Consensus 465 ~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 465 GIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHC-------
T ss_pred HHHHHHHHHHHHHH
Confidence 6655554 665544
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.18 E-value=2.1e-06 Score=72.02 Aligned_cols=115 Identities=9% Similarity=0.039 Sum_probs=74.6
Q ss_pred eeeEEEEEecccchhHHHHHhHhhhhh---hccccchHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHH
Q psy10821 45 KFESCRMFDAFTNKTMTCHSWVYDKTY---YKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSM 121 (200)
Q Consensus 45 ~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~ 121 (200)
.++.+.+.||+|||+.+..+....... .....+. +.....++.+++.+..++..+.+..|.+|++ |+++.++..
T Consensus 312 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 388 (438)
T 3o7q_A 312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV- 388 (438)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence 345577889999997765433322221 1112222 3333345556777778888999999999988 999988877
Q ss_pred HHHHHHHHHHHHH--HHhhcC-chHHHHHHHHHHHHHHHHHhhc
Q psy10821 122 CARLSAALTPLIG--LMDSFD-KRIPTTIFATITLMSGILSTFL 162 (200)
Q Consensus 122 ~~~i~~~~~p~i~--~~~~~~-~~~~~~~~~~~~~~~~i~~~~l 162 (200)
.+.+++.++|.+. +.+..+ ....+.+.++..++..+..+..
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999998 456666 6666666555444444433333
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.67 E-value=8.8e-05 Score=63.87 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH-HHhh-----------cCc-hH
Q psy10821 77 TMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG-LMDS-----------FDK-RI 143 (200)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~-~~~~-----------~~~-~~ 143 (200)
+..+.+...++.+++.....+....+..|..|++.|+++.|+......+++.++|.+. ...+ .+. ..
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 483 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAF 483 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence 3444555566667777778888899999999999999999999999999999999998 3222 111 22
Q ss_pred HHHHHHHHHHHHHHHHhh-cccCCCCCchHH
Q psy10821 144 PTTIFATITLMSGILSTF-LPETWNMVCDRR 173 (200)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~-lpet~~~~l~~~ 173 (200)
.+.+.+++++++.+..++ .+++++++.++.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (524)
T 2xut_A 484 QMFFFAGFAILAAIVFALYARSYQMQDHYRQ 514 (524)
T ss_dssp HHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 255566666666555444 477666554433
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.04 E-value=4e-05 Score=64.58 Aligned_cols=122 Identities=12% Similarity=-0.022 Sum_probs=58.0
Q ss_pred CeeeEEEEEecccchhHHHHHhHhhhhh---hccccchHH----HHHHHHHHHHHHhhhhhhHHHhhccccch--hHHhH
Q psy10821 44 GKFESCRMFDAFTNKTMTCHSWVYDKTY---YKTSRTMEY----ILYIVFFGKFCIAGSFAVIYNYSAELFPT--VLRNT 114 (200)
Q Consensus 44 G~~~~~~l~Dr~GRr~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~sElfPt--~vR~t 114 (200)
+.+..+.+.||+|||+.+..+....... ......... ......+.....+..++.......+..+. +.|+.
T Consensus 59 ~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 138 (417)
T 2cfq_A 59 FQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNF 138 (417)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhccc
Confidence 4466789999999998766433322110 000000000 01111111111112222222333333333 33455
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHhhc-ccC
Q psy10821 115 GLGVGSMCARLSAALTPLIG-LMDSFDKRIPTTIFATITLMSGILSTFL-PET 165 (200)
Q Consensus 115 g~~l~~~~~~i~~~~~p~i~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l-pet 165 (200)
..+.....+.++..++|.+. ...+.+++..+++.++..++..+..++. ||+
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 55666556668888888887 3444577777766555544444444444 443
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.04 E-value=0.0029 Score=51.80 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhccccchhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy10821 82 LYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG 134 (200)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~sElfPt~vR~tg~~l~~~~~~i~~~~~p~i~ 134 (200)
....++.+++.+..++....+..|.+| +.|+++.++......+++.++|.+.
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~ 346 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLS 346 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677778888999999999 8999999999999989998888877
Done!