RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10821
(200 letters)
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 85.1 bits (211), Expect = 2e-19
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 85 VFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMDSFDKRIP 144
GKF I +F ++Y Y+AEL+PTV+RN G+GV S AR+ + ++P + + +P
Sbjct: 417 AVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLP 476
Query: 145 TTIFATITLMSGILSTFLPET 165
+F + L++GIL+ FLPET
Sbjct: 477 LVLFGGLALLAGILTLFLPET 497
Score = 40.8 bits (96), Expect = 2e-04
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 166 WNMVCDRRWMLAVAQMTYMFGVFTGAVTLGSLADK 200
W++VC+ W + + Q + GV G+ G L+D+
Sbjct: 119 WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR 153
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 43.8 bits (104), Expect = 2e-05
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 81 ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMDS 138
+L + F + +F + ++EL P R T G+ + L AL PL+ L+D+
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327
Query: 139 FDKRIPTTIFATITLMSGILSTFLP 163
I A + L++ +L LP
Sbjct: 328 GGYGGVFLILAALALLAALLLLLLP 352
Score = 34.2 bits (79), Expect = 0.035
Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 10/121 (8%)
Query: 80 YILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMD 137
++ G + AE FP R LG+ S L A L PL+G L +
Sbjct: 90 LLVGRFLLG-LGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148
Query: 138 SFDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLAVAQMTYMFGVFTGAVTLGSL 197
S R I A + L+ +L FL +LA+A FG + L
Sbjct: 149 SLGWRWLFLILAILGLLLALLLLFLLRLL-------LLLALAFFLLSFGYYGLLTYLPLY 201
Query: 198 A 198
Sbjct: 202 L 202
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 41.6 bits (98), Expect = 1e-04
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 81 ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG 134
+L + F + G + +Y A +PT +R TG+G RL A + P++
Sbjct: 341 LLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 34.2 bits (78), Expect = 0.038
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 71 YYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALT 130
+ S + I + FG IA ++ + + EL+P+ R T G + + +A L
Sbjct: 643 SFGNSESA-MIALLCLFGGLSIA-AWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLG 700
Query: 131 PLI-GLMDSFDKRIPTTIFATITLMSGILSTFLPETWNMV 169
LI G K P + G+L+ LP+T V
Sbjct: 701 ILIFGSFVGITKAAPILFASAALACGGLLALKLPDTRGQV 740
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 33.9 bits (78), Expect = 0.041
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 81 ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMDS 138
++ V G F A+ FP R LG+ S L AAL PL+G L
Sbjct: 89 LVLRVLQG-LGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASL 147
Query: 139 FDKRIPTTIFATITLMSGILSTFL 162
F R I A + L++ +L+ L
Sbjct: 148 FGWRAAFLILAILALLAAVLAALL 171
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 32.9 bits (75), Expect = 0.086
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 86 FFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG 134
FF + + G + ++ + E FPT R GLG L AL P+IG
Sbjct: 336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIG 384
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 31.9 bits (73), Expect = 0.22
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 86 FFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLI 133
F + G +V+Y + +PT +R TG+G RL + PL+
Sbjct: 316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLL 363
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 31.2 bits (71), Expect = 0.37
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 86 FFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSA-----ALTPLIGLMDSFD 140
FF F G A + E+FPT R+T G+ + + A L D
Sbjct: 403 FFANF---GPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDP-T 458
Query: 141 KRIPTT--------IFATITLMSGILSTFL-PET 165
K PT IFA + GIL T L PET
Sbjct: 459 KGYPTGIWMGHVLEIFALFMFL-GILFTLLIPET 491
>gnl|CDD|181465 PRK08557, PRK08557, hypothetical protein; Provisional.
Length = 417
Score = 30.9 bits (70), Expect = 0.38
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 26 VLDWNSTEVLTWIHKKD 42
+LDWNS ++ ++I+ D
Sbjct: 319 ILDWNSLDIWSYIYLND 335
>gnl|CDD|172687 PRK14199, PRK14199, camphor resistance protein CrcB; Provisional.
Length = 128
Score = 28.6 bits (64), Expect = 1.4
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 12/127 (9%)
Query: 78 MEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIGLMD 137
ME ++ + G + G Y +F + N G++ + AL LIG +
Sbjct: 1 MEKLILAIIVG---LGGFIGASLRYLISIFAAKMFNGNFPYGTLIVNIVGAL--LIGFIM 55
Query: 138 SFDKRIP-----TTIFATITLMSGI--LSTFLPETWNMVCDRRWMLAVAQMTYMFGVFTG 190
F +F T +M G+ STF ET N++ + +L + + G+
Sbjct: 56 EFSMDTALISSNMKLFLTTGIMGGLTTFSTFSYETINLITNGNILLGIENIILNLGLSLL 115
Query: 191 AVTLGSL 197
V +G
Sbjct: 116 GVVIGQK 122
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 28.0 bits (63), Expect = 2.1
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 86 FFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLIG--LMDSFDKRI 143
F F + A+I A+++P R LG+ S L L P +G L R
Sbjct: 63 FGAAFALVAGAALI----ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118
Query: 144 PTTIFATITLMSGILSTF-LPET 165
P A + L + IL F LPET
Sbjct: 119 PFLFLAILALAAFILLAFLLPET 141
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 28.1 bits (63), Expect = 3.4
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 81 ILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLS----AALTPLIGLM 136
+L+I FF VI +E+FP LR G+ + L+ L P + +
Sbjct: 390 LLFIAFF-AMGWGPVPWVI---VSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM--L 443
Query: 137 DSFDKRIPTTIFATITLMSGILSTF-LPET 165
+S F + ++ I F LPET
Sbjct: 444 ESIGVGGVFIFFGGLNVLGLIFVYFFLPET 473
>gnl|CDD|214555 smart00202, SR, Scavenger receptor Cys-rich. The sea ucrhin egg
peptide speract contains 4 repeats of SR domains that
contain 6 conserved cysteines. May bind bacterial
antigens in the protein MARCO.
Length = 101
Score = 26.2 bits (58), Expect = 5.3
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 152 TLMSGILSTFLPETWNMVCDRRWMLAVAQ 180
+ G + + W VCD W L A
Sbjct: 8 SPCEGRVEVYHNGQWGTVCDDGWDLRDAN 36
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 27.5 bits (62), Expect = 5.3
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 125 LSAALTPLIG--LMDSFDKRIPTTIFATITLMSGIL 158
LS AL PL+G L++ F + IFAT+ ++ +L
Sbjct: 141 LSPALAPLLGAWLLNHFGWQA---IFATLFAITLLL 173
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 27.6 bits (62), Expect = 5.3
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 18/117 (15%)
Query: 81 ILYIVFFGKFCIAGS---FAVIYNYS-AELFPTVLRNTGLGVGSMCARLSAALTPLIGLM 136
++ ++ F F I GS + V Y ELF +L G G + L P L+
Sbjct: 243 LMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLL-LLASGAGLLI---GLILWP--RLV 296
Query: 137 DSFDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLAVAQMTYMFGVFTGAVT 193
F K+ I + + +L F P ++ ++ VA + GV TG
Sbjct: 297 KKFGKKKLFLIGLLLLAVGYLLLYFTP-AGSV-----VLIVVA--LIIAGVGTGIAN 345
>gnl|CDD|222905 PHA02603, nrdC.11, hypothetical protein; Provisional.
Length = 330
Score = 27.0 bits (60), Expect = 6.9
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 163 PETWNMVCDRRWMLAVAQMTYMFG 186
P+ W + D R M G
Sbjct: 97 PDVWQYIQDNRSRFYTTNMKAYLG 120
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 27.3 bits (61), Expect = 7.1
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 80 YILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALTPLI 133
+L+I FF VI +ELFP +R + + + L+ L +
Sbjct: 354 ILLFIAFFA-LGWGPVPWVI---VSELFPLGVRPKAMAIATAANWLANFLIGFL 403
>gnl|CDD|188885 cd08757, SAM_PNT_ESE, Sterile alpha motif (SAM)/Pointed domain of
ESE-like ETS transcriptional regulators. SAM Pointed
domain of ESE-like (Epithelium-Specific ETS) subfamily
of ETS transcriptional regulators is a putative
protein-protein interaction domain. It can act as a
major transactivator by providing a potential docking
site for co-activators. ETS factors are important for
cell differentiation. They can be involved in
regulation of gene expression in different types of
epithelial cells. They are expressed in salivary gland,
intestine, stomach, pancreas, lungs, kidneys, colon,
mammary gland, and prostate. Members of this group are
proto-oncogenes. Expression profiles of these factors
are altered in epithelial cancers, which makes them
potential targets for cancer therapy.
Length = 69
Score = 25.4 bits (56), Expect = 7.8
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 28 DWNSTEVLTWI-----HKKDDGKFESCRMFDAFTNKTM 60
W +VL W+ K D + + + FD +T+
Sbjct: 4 HWTKNDVLDWLLFVAEQNKIDAEEINFQKFDNIDGQTL 41
>gnl|CDD|147328 pfam05095, DUF687, Protein of unknown function (DUF687). This
family contains several uncharacterized Chlamydia
proteins.
Length = 542
Score = 27.0 bits (60), Expect = 8.6
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 16/71 (22%)
Query: 121 MCARLSAALTPLIGLMD--------SFDKRIPTTIFATITLMSG------ILSTFLPETW 166
+ A +L L+ L+D S I IF + +SG IL LP
Sbjct: 348 LLALGLRSLALLVTLLDLVNIIRRLSRPPPILRAIFFVASTLSGTVVFLDILEWCLPRLR 407
Query: 167 NMVCDR--RWM 175
+ V R +
Sbjct: 408 DRVQRLGLRRL 418
>gnl|CDD|217374 pfam03116, NQR2_RnfD_RnfE, NQR2, RnfD, RnfE family. This family of
bacterial proteins includes a sodium-translocating
NADH-ubiquinone oxidoreductase (i.e. a respiration
linked sodium pump). In Vibrio cholerae, it negatively
regulates the expression of virulence factors through
inhibiting (by an unknown mechanism) the transcription
of the transcriptional activator ToxT. The family also
includes proteins involved in nitrogen fixation, RnfD
and RnfE. The similarity of these proteins to
NADH-ubiquinone oxidoreductases was previously noted.
Length = 319
Score = 26.7 bits (60), Expect = 9.3
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 14/54 (25%)
Query: 142 RIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLAVAQMTYMFGVFTGAVTLG 195
RIP ++ + ++S + + P + +F + +G + LG
Sbjct: 212 RIPVSVLGGVAVLSLLFNLIGPMFY--------------APPLFHLLSGGLMLG 251
>gnl|CDD|238849 cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipoxygenase related
proteins. Lipoxygenases are nonheme, nonsulfur iron
dioxygenases that act on lipid substrates containing one
or more (Z,Z)-1,4-pentadiene moieties. In plants, the
immediate products are involved in defense mechanisms
against pathogens and may be precursors of metabolic
regulators. The generally proposed function of PLAT/LH2
domains is to mediate interaction with lipids or
membrane bound proteins.
Length = 137
Score = 26.1 bits (58), Expect = 9.7
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 59 TMTCHSWVYDKTYYKTSRTMEYILYIVFF 87
T C+SWVY K Y R +FF
Sbjct: 115 TFVCNSWVYPKKDYPDKR--------IFF 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.137 0.438
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,217,627
Number of extensions: 935755
Number of successful extensions: 1037
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1032
Number of HSP's successfully gapped: 45
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.4 bits)