RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10821
         (200 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.1 bits (75), Expect = 0.068
 Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 36/129 (27%)

Query: 63  HSWVYDKTYYKTSRTMEYILYIVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMC 122
             W+ + +    +   +Y+L I          S  +I       +    +  G   G + 
Sbjct: 216 LEWLENPS---NTPDKDYLLSIPI--------SCPLIGVIQLAHYVVTAKLLGFTPGELR 264

Query: 123 ARLSAALTPLIGLMDSFDKRIPTTIFATITLMSGILSTFLPETWNMVCDRRWMLAVAQMT 182
           + L  A     GL           + A     +         +W    +  ++     +T
Sbjct: 265 SYLKGATGHSQGL-----------VTAVAIAETD--------SW----ESFFVSVRKAIT 301

Query: 183 YMFGVFTGA 191
            +F  F G 
Sbjct: 302 VLF--FIGV 308


>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
           symport, sugar transport, transmembrane, formylation;
           2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
           1pv6_A 2cfp_A 2v8n_A 2y5y_A*
          Length = 417

 Score = 29.5 bits (66), Expect = 0.63
 Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 90  FCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCAR-LSAALTPLIG--LMDSFDKRIPTT 146
           F +       + Y    F      T   V     + L+     ++   + +S   +    
Sbjct: 324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383

Query: 147 IFATITLMSGILSTFL 162
           +   + L   ++S F 
Sbjct: 384 VLGLVALGFTLISVFT 399


>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein
          synthesis, protein regulation, structural genomics,
          NPPSFA; NMR {Homo sapiens}
          Length = 103

 Score = 26.7 bits (59), Expect = 2.3
 Identities = 4/35 (11%), Positives = 14/35 (40%)

Query: 18 PDVEINGTVLDWNSTEVLTWIHKKDDGKFESCRMF 52
          P +E++     W   +V +++ +    +    +  
Sbjct: 19 PGLELHPDYKTWGPEQVCSFLRRGGFEEPVLLKNI 53


>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
           RAB gtpases, APPL1, endocytic PATH golgi complex,
           hydrolase-protein binding complex; 2.30A {Homo sapiens}
           PDB: 2qv2_A
          Length = 366

 Score = 27.6 bits (61), Expect = 2.7
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 124 RLSAALTPLIGLMDSFDKRIPTTIFATITLMSGILSTFL 162
           +       L  ++D  D  IP TI  +   ++  L  FL
Sbjct: 222 QTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFL 260


>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids,
           oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1
           b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A
           1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A*
           1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ...
          Length = 839

 Score = 27.9 bits (61), Expect = 2.7
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 8/27 (29%)

Query: 61  TCHSWVYDKTYYKTSRTMEYILYIVFF 87
            C+SWVY+   YK+ R        +FF
Sbjct: 126 VCNSWVYNTKLYKSVR--------IFF 144


>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
           major facilitator superfamily, secondary active membrane
           transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
          Length = 451

 Score = 26.2 bits (58), Expect = 8.5
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 84  IVFFGKFCIAGSFAVIYNYSAELFPTVLRNTGLGVGSMCARLSAALT--PLIG-LMDSFD 140
            +    F I G   +I  ++ EL P     T  G   +   L  ++    ++G  +D F 
Sbjct: 352 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411

Query: 141 KRIPTTIFATITLMSGILSTFL 162
                 +    ++++ IL   +
Sbjct: 412 WDGGFMVMIGGSILAVILLIVV 433


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.137    0.438 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,147,334
Number of extensions: 177164
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 11
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.3 bits)