RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10821
         (200 letters)



>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine
           max), isozyme L1 [TaxId: 3847]}
          Length = 143

 Score = 29.4 bits (66), Expect = 0.18
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 8/27 (29%)

Query: 61  TCHSWVYDKTYYKTSRTMEYILYIVFF 87
            C+SWVY+   YK+ R        +FF
Sbjct: 120 VCNSWVYNTKLYKSVR--------IFF 138


>d2h85a1 c.66.1.48 (A:1-190) Nsp15 {SARS coronavirus [TaxId:
           227859]}
          Length = 190

 Score = 28.3 bits (63), Expect = 0.54
 Identities = 8/28 (28%), Positives = 11/28 (39%)

Query: 21  EINGTVLDWNSTEVLTWIHKKDDGKFES 48
            +NG  L   S +      KK DG  + 
Sbjct: 161 SVNGVTLIGESVKTQFNYFKKVDGIIQQ 188


>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 127

 Score = 25.3 bits (54), Expect = 4.1
 Identities = 11/71 (15%), Positives = 19/71 (26%)

Query: 8  APTPEHRCAIPDVEINGTVLDWNSTEVLTWIHKKDDGKFESCRMFDAFTNKTMTCHSWVY 67
           PTP     +P+   +  + D     V       DD      +    + +       W +
Sbjct: 7  GPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHH 66

Query: 68 DKTYYKTSRTM 78
                T  T 
Sbjct: 67 QTEVSGTQTTA 77


>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 24.5 bits (52), Expect = 5.4
 Identities = 5/57 (8%), Positives = 18/57 (31%)

Query: 23 NGTVLDWNSTEVLTWIHKKDDGKFESCRMFDAFTNKTMTCHSWVYDKTYYKTSRTME 79
          N T+  +N   ++ W ++              +  K         + +++  + +  
Sbjct: 6  NVTIESYNMNPIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDH 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.137    0.438 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 780,459
Number of extensions: 34574
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 7
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.6 bits)