Query psy10822
Match_columns 257
No_of_seqs 113 out of 418
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:23:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02748 viral inexin-like pro 100.0 2.1E-76 4.5E-81 551.8 28.0 249 2-250 106-357 (360)
2 PF00876 Innexin: Innexin; In 100.0 3.1E-67 6.7E-72 489.6 25.3 243 2-248 84-348 (348)
3 cd00929 Cyt_c_Oxidase_VIIc Cyt 49.2 26 0.00057 23.4 3.2 29 150-178 11-39 (46)
4 PF05402 PqqD: Coenzyme PQQ sy 35.0 95 0.0021 21.3 4.6 23 18-40 19-42 (68)
5 KOG4684|consensus 24.4 40 0.00088 30.0 1.3 34 115-149 69-104 (275)
6 PF12273 RCR: Chitin synthesis 22.3 64 0.0014 25.7 2.0 11 166-176 2-12 (130)
7 PF06643 DUF1158: Protein of u 18.8 1.4E+02 0.0031 22.0 3.0 21 6-26 58-78 (82)
8 PF15202 Adipogenin: Adipogeni 17.3 3.5E+02 0.0075 19.8 4.6 33 153-185 7-39 (81)
9 PF04818 CTD_bind: RNA polymer 16.9 97 0.0021 21.3 1.7 13 76-88 3-15 (64)
10 MTH00171 ATP8 ATP synthase F0 16.8 1.7E+02 0.0036 19.4 2.9 15 159-173 10-24 (54)
No 1
>PHA02748 viral inexin-like protein; Provisional
Probab=100.00 E-value=2.1e-76 Score=551.78 Aligned_cols=249 Identities=38% Similarity=0.782 Sum_probs=232.9
Q ss_pred cchhh---HHHHHHHHHHhHHHHHHHhccCcHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy10822 2 SCRQY---ECSTAAILFYTPRWLWKHWEGGKIHALMMDLDVGICSEIEKRQKKKLLLDYLWENLRYHNWWAYRYYLCEFL 78 (257)
Q Consensus 2 ~~~~~---vl~~QA~lFy~P~~iWk~~~gg~i~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~Y~~~K~L 78 (257)
+|||| ||++||++||+|+++||.+|||++++++.+++.+..+++++++.++.+++|+.++++.|+.|+..|++||+|
T Consensus 106 ~YYQWVpfvL~lQA~lFYiP~~iWk~~egg~i~~l~~~~~~~~~~~~~~~~~i~~l~~y~~~~l~~h~~y~~~Y~~~klL 185 (360)
T PHA02748 106 GYYQWVFITLFLQAVFFYIPHYIWKAWEGGKMKMLAVELASPVLSKDCIEKNTQPLVDYFFMNLHSHNAYAYKYFTCELL 185 (360)
T ss_pred ceeeHHHHHHHHHHHHHHchHHHHHHhccCcHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 68988 568999999999999999999999999988777777778888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcccchHHHHhhhcCCCccccCcccccCCceeeeeeeEecccCccceeeeEEeeccchhhhH
Q psy10822 79 SLINVIGQMFLMNRFFDGAFFTFGIDVITFMENDQEDRIDPMIFIFPRMTKCTFFKYGVSGEVERHDAVCILPLNVVNEK 158 (257)
Q Consensus 79 ~l~Nvv~Q~~ll~~FLg~~~~~~G~~vl~~~~~~~~~~~~~~~~~FPRVT~Cdf~~~r~~Gnv~~~tvqCVLpiN~~NEK 158 (257)
|++|+++|+++||+|||++++.||++++.+...+++++++|++++|||||+|||+++|++||+|+||+|||||+||+|||
T Consensus 186 ~l~Nvi~Qi~lmn~FLg~~f~~yG~~vl~~~~~~~~~~~~~~s~~FPrvT~C~f~~~~~~G~~~~~~~qCVLpiN~~NEK 265 (360)
T PHA02748 186 NLINIVGQIQFMNIFIGEDFQLYGIYVIFFNQEAGKSMTNPMERLFPTVTKCTYEKYGPSGTPENIEGICLLTQNSLNEK 265 (360)
T ss_pred HHHHHHHHHHHHHHHhCCCchhccHHHHhhhhhccccccCcccCccCcceeeeeeeecCCCCcceeeeEEEechhhHHHH
Confidence 99999999999999999999999999998876666777889999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhhccChHHHHHHHhccCCCcchhhHhHhhccChHHHHHHH
Q psy10822 159 IYVFLWFWFLALGLLTLFNVIYRIVIIMSPRMRVYLLRMRFRLIRREAVETLVRRSKMGDWFLFYMLGENIDSVIFRDVM 238 (257)
Q Consensus 159 IfifLWFW~v~l~vit~~~~i~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~g~flLr~i~~N~~~~~~~elv 238 (257)
||+|||||+++|+++|+++++||++++++|+.|..+++...+..+++.++.+.++.+.||||+||||++|+|+++++|++
T Consensus 266 IfiFLWFW~~~lav~t~~~~~~~i~~~~~~~~R~~~ir~~~~~~~~~~~~~v~~~l~~ddwFlL~~l~~N~~~~~~~eli 345 (360)
T PHA02748 266 IYVFLWFWFHILAVISAFVVIYRIATLLSSSLRLYMFRSSSSLNRADDIAVVYNKLQIGDWFLLHMLRKNINPLAYKELI 345 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHhhccCCHHHHHHHHHhCCcCCEEEhhHhhhhCChHHHHHHH
Confidence 99999999999999999999999999999999999999988777777888777889999999999999999999999999
Q ss_pred HHHHHHhcCCCC
Q psy10822 239 HDLAARLASHPN 250 (257)
Q Consensus 239 ~~L~~~~~~~~~ 250 (257)
++||++|+++..
T Consensus 346 ~~L~~~~~~~~~ 357 (360)
T PHA02748 346 SRLAQHFDVSVC 357 (360)
T ss_pred HHHHHHcccccc
Confidence 999999976543
No 2
>PF00876 Innexin: Innexin; InterPro: IPR000990 The pannexin family combines invertebrate gap junction proteins and their vertebrate homologs. These proteins have been named innexins []. Gap junctions are composed of membrane proteins, which form a channel permeable for ions and small molecules connecting cytoplasm of adjacent cells. Although gap junctions provide similar functions in all multicellular organisms, until recently it was believed that vertebrates and invertebrates use unrelated proteins for this purpose. While the connexins family of gap junction proteins is well- characterised in vertebrates, no homologs have been found in invertebrates. In turn, gap junction molecules with no sequence homology to connexins have been identified in insects and nematodes. It has been suggested that these proteins are specific invertebrate gap junctions, and they were thus named innexins (invertebrate analog of connexins) []. As innexin homologs were recently identified in other taxonomic groups including vertebrates, indicating their ubiquitous distribution in the animal kingdom, they were called pannexins (from the Latin pan-all, throughout, and nexus-connection, bond) [, , ]. Genomes of vertebrates carry probably a conserved set of 3 pannexin paralogs (PANX1, PANX2 and PANX3). Invertebrate genomes may contain more than a dozen pannexin (innexin) genes. Vinnexins, viral homologs of pannexins/innexins, were identified in Polydnaviruses that occur in obligate symbiotic associations with parasitoid wasps. It was suggested that virally encoded vinnexin proteins may function to alter gap junction proteins in infected host cells, possibly modifying cell-cell communication during encapsulation responses in parasitized insects [, ]. Structurally pannexins are simillar to connexins. Both types of protein consist of a cytoplasmic N-terminal domain, followed by four transmembrane segments that delimit two extracellular and one cytoplasmic loops; the C- terminal domain is cytoplasmic.; GO: 0005921 gap junction
Probab=100.00 E-value=3.1e-67 Score=489.60 Aligned_cols=243 Identities=33% Similarity=0.681 Sum_probs=213.8
Q ss_pred cchhh---HHHHHHHHHHhHHHHHH---HhccCcHHHHHhhhhcCCCcH-HHHHHHHHHHHHHHHHhhhhhhH-------
Q psy10822 2 SCRQY---ECSTAAILFYTPRWLWK---HWEGGKIHALMMDLDVGICSE-IEKRQKKKLLLDYLWENLRYHNW------- 67 (257)
Q Consensus 2 ~~~~~---vl~~QA~lFy~P~~iWk---~~~gg~i~~l~~~~~~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~------- 67 (257)
+|||| +|++||++||+|+++|| ..+|++++++++.++.+...+ +++++..+.+|+|+++.++.++.
T Consensus 84 ~YYQWVPfiL~lQA~lfylP~~iW~~~~~~~g~~l~~i~~~~~~~~~~~~~~r~~~~~~l~~~l~~~l~~~~~~~~~~g~ 163 (348)
T PF00876_consen 84 SYYQWVPFILLLQAILFYLPHLIWRLLNKWSGIDLKSIVEEADKAQNSDPEERKKKIEKLARYLERYLKQHRRYKKRSGN 163 (348)
T ss_pred eeehhhHHHHHHHHHHHHhHHHHHHHhhhccCccHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHhhhhhccccch
Confidence 57766 67999999999999999 667899999998776554443 66777779999999998877654
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHhhhcCCCccccCcccccCCceeeeeeeEecccCccceeee
Q psy10822 68 -WAYRYYLCEFLSLINVIGQMFLMNRFFDGAFFTFGIDVITFMENDQEDRIDPMIFIFPRMTKCTFFKYGVSGEVERHDA 146 (257)
Q Consensus 68 -~~~~Y~~~K~L~l~Nvv~Q~~ll~~FLg~~~~~~G~~vl~~~~~~~~~~~~~~~~~FPRVT~Cdf~~~r~~Gnv~~~tv 146 (257)
++..|++||+||++|+++|+++|++|||+++..||.+++.++..+.+|.+ +++|||||+|||+ +|.+||+|+||+
T Consensus 164 ~l~~~Yl~~K~L~l~n~i~Q~~ll~~fLg~~~~~~G~~~~~~~~~g~~w~~---s~~FPrvt~Cdf~-vr~lg~~~~~tv 239 (348)
T PF00876_consen 164 YLTFLYLFCKLLYLINVIGQIFLLNAFLGGDFYFWGFEVLSDLLNGRDWQE---SGVFPRVTFCDFE-VRQLGNVQRHTV 239 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHHHHHHhhhhhhhhcc---CCCCCCcceechh-hhhcCCccceeE
Confidence 59999999999999999999999999999999999999999854433333 4699999999999 899999999999
Q ss_pred EEeeccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhhccC------hHHHHHHHhc-cCCCcc
Q psy10822 147 VCILPLNVVNEKIYVFLWFWFLALGLLTLFNVIYRIVIIMSPRMRVYLLRMRFRLIR------REAVETLVRR-SKMGDW 219 (257)
Q Consensus 147 qCVLpiN~~NEKIfifLWFW~v~l~vit~~~~i~~~~~~~~~~~r~~~~~~~l~~~~------~~~~~~~~~~-~~~~g~ 219 (257)
|||||+||||||||+|||||+++|+++|++|+++|+.+++.++.|..++++.++..+ ++..++++++ .+.|||
T Consensus 240 qCvL~iN~~NEKIfifLWfW~v~l~vit~~~~i~w~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~fv~~~L~~Dg~ 319 (348)
T PF00876_consen 240 QCVLPINMFNEKIFIFLWFWFVFLAVITVLSLIYWIFRLFSPSSRRSFIKQLLRLADSFSPKDKRLLDRFVNDYLRPDGV 319 (348)
T ss_pred EEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHhCCCccccchHHHHHHHHhccCCCCE
Confidence 999999999999999999999999999999999999999999999999888887542 2356777744 788899
Q ss_pred hhhHhHhhccChHHHHHHHHHHHHHhcCC
Q psy10822 220 FLFYMLGENIDSVIFRDVMHDLAARLASH 248 (257)
Q Consensus 220 flLr~i~~N~~~~~~~elv~~L~~~~~~~ 248 (257)
|+||||++|+|+++++|++++||++|+++
T Consensus 320 flL~~i~~n~g~~v~~el~~~L~~~~~~~ 348 (348)
T PF00876_consen 320 FLLRLIAKNAGDIVARELVEELWERYKEK 348 (348)
T ss_pred eHHHHHHHhCChHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999874
No 3
>cd00929 Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VIIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits.
Probab=49.18 E-value=26 Score=23.42 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=21.6
Q ss_pred eccchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy10822 150 LPLNVVNEKIYVFLWFWFLALGLLTLFNV 178 (257)
Q Consensus 150 LpiN~~NEKIfifLWFW~v~l~vit~~~~ 178 (257)
||-|+=|.+++...|+|+..++...=+-.
T Consensus 11 LPF~~~nk~~~~~~~~~ffg~GF~~PF~i 39 (46)
T cd00929 11 LPFSVTNKWRLTALFHLFFGSGFSAPFIV 39 (46)
T ss_pred CCcccCccchHHHHHHHHHHHHHhhhHHH
Confidence 89999999998888888666655544333
No 4
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=35.03 E-value=95 Score=21.31 Aligned_cols=23 Identities=13% Similarity=0.469 Sum_probs=14.2
Q ss_pred HHHHHHHhccC-cHHHHHhhhhcC
Q psy10822 18 PRWLWKHWEGG-KIHALMMDLDVG 40 (257)
Q Consensus 18 P~~iWk~~~gg-~i~~l~~~~~~~ 40 (257)
-..||+.+.|+ ++.+++..+...
T Consensus 19 a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 19 AAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp HHHHHHH--SSS-HHHHHHHHHHH
T ss_pred HHHHHHHccCCCCHHHHHHHHHHH
Confidence 36799999886 577777665433
No 5
>KOG4684|consensus
Probab=24.40 E-value=40 Score=30.01 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=25.7
Q ss_pred cccCcccccCCceee--eeeeEecccCccceeeeEEe
Q psy10822 115 DRIDPMIFIFPRMTK--CTFFKYGVSGEVERHDAVCI 149 (257)
Q Consensus 115 ~~~~~~~~~FPRVT~--Cdf~~~r~~Gnv~~~tvqCV 149 (257)
...|||+|-||-||- |+.. +.--|..|.|.|-|-
T Consensus 69 ~lts~~~g~~PmvtCRVCq~~-i~~egk~~QHVVKC~ 104 (275)
T KOG4684|consen 69 ALTSAMLGQFPMVTCRVCQVA-ISLEGKNQQHVVKCH 104 (275)
T ss_pred hccccccCCCceEeehhhhHH-hccccccceeeEeec
Confidence 457888999997663 5554 566688899999885
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.32 E-value=64 Score=25.73 Aligned_cols=11 Identities=18% Similarity=0.477 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q psy10822 166 WFLALGLLTLF 176 (257)
Q Consensus 166 W~v~l~vit~~ 176 (257)
|.+++++|.++
T Consensus 2 W~l~~iii~~i 12 (130)
T PF12273_consen 2 WVLFAIIIVAI 12 (130)
T ss_pred eeeHHHHHHHH
Confidence 44554444443
No 7
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=18.80 E-value=1.4e+02 Score=21.98 Aligned_cols=21 Identities=24% Similarity=0.729 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhHHHHHHHhc
Q psy10822 6 YECSTAAILFYTPRWLWKHWE 26 (257)
Q Consensus 6 ~vl~~QA~lFy~P~~iWk~~~ 26 (257)
|.+++-|+=|++-+++||-|-
T Consensus 58 WFLlLGaiEy~viRfiwrRwf 78 (82)
T PF06643_consen 58 WFLLLGAIEYFVIRFIWRRWF 78 (82)
T ss_pred HHHHHhHHHHHHHHHHHHHHh
Confidence 577899999999999999764
No 8
>PF15202 Adipogenin: Adipogenin
Probab=17.30 E-value=3.5e+02 Score=19.78 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=24.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10822 153 NVVNEKIYVFLWFWFLALGLLTLFNVIYRIVII 185 (257)
Q Consensus 153 N~~NEKIfifLWFW~v~l~vit~~~~i~~~~~~ 185 (257)
-+.|+--|-||=||+..=..+-++-+|.|+.-+
T Consensus 7 plvndltfsflvfwlclpv~lllfl~ivwlrfl 39 (81)
T PF15202_consen 7 PLVNDLTFSFLVFWLCLPVGLLLFLLIVWLRFL 39 (81)
T ss_pred chhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999877766666677776533
No 9
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=16.87 E-value=97 Score=21.27 Aligned_cols=13 Identities=38% Similarity=0.143 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q psy10822 76 EFLSLINVIGQMF 88 (257)
Q Consensus 76 K~L~l~Nvv~Q~~ 88 (257)
-+||++|.|+|=-
T Consensus 3 ~~lYl~ndI~q~s 15 (64)
T PF04818_consen 3 ALLYLANDILQNS 15 (64)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHh
Confidence 3688999999854
No 10
>MTH00171 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=16.83 E-value=1.7e+02 Score=19.45 Aligned_cols=15 Identities=40% Similarity=1.079 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy10822 159 IYVFLWFWFLALGLL 173 (257)
Q Consensus 159 IfifLWFW~v~l~vi 173 (257)
.++++++|+++++++
T Consensus 10 f~~~~~~W~~l~~~~ 24 (54)
T MTH00171 10 FFIFLFSWLIFLTLL 24 (54)
T ss_pred HHHHHHHHHHHHHHH
Confidence 367888888888664
Done!