Query psy10822
Match_columns 257
No_of_seqs 113 out of 418
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:24:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqm_A Ribosome-associated fac 10.9 1.9E+02 0.0064 20.5 3.0 30 121-153 28-57 (96)
2 3v2c_Y Ribosome-associated inh 8.2 3.2E+02 0.011 20.4 3.5 30 121-153 28-57 (119)
3 3j0g_M E3 protein; alphavirus, 7.9 1.9E+02 0.0065 19.4 1.8 21 221-241 30-50 (59)
4 2fj6_A Hypothetical UPF0346 pr 7.4 1.8E+02 0.0062 20.8 1.6 28 220-247 42-69 (82)
5 2o6k_A UPF0346 protein MW1311; 7.0 1.8E+02 0.0062 20.8 1.4 28 220-247 42-69 (81)
6 3rjp_A COVR; winged helix-turn 6.3 1.3E+02 0.0045 20.9 0.4 25 219-243 28-53 (96)
7 1imu_A Hypothetical protein HI 6.3 2.5E+02 0.0084 20.4 1.9 28 122-152 29-56 (107)
8 2km4_A Regulator of TY1 transp 6.0 2.3E+02 0.008 21.6 1.7 12 77-88 60-71 (142)
9 3pc7_A DNA ligase 3; DNA repai 5.9 1.6E+02 0.0056 21.1 0.7 14 17-30 71-84 (88)
10 2z9m_A Response regulator YYCF 5.8 1.7E+02 0.0057 21.4 0.8 25 219-243 42-67 (120)
No 1
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=10.88 E-value=1.9e+02 Score=20.50 Aligned_cols=30 Identities=3% Similarity=-0.024 Sum_probs=21.4
Q ss_pred cccCCceeeeeeeEecccCccceeeeEEeeccc
Q psy10822 121 IFIFPRMTKCTFFKYGVSGEVERHDAVCILPLN 153 (257)
Q Consensus 121 ~~~FPRVT~Cdf~~~r~~Gnv~~~tvqCVLpiN 153 (257)
...||+++-|++. +..-++ .+.+.+.++++
T Consensus 28 ~k~~~~i~~~~V~-l~~e~~--~~~~ei~i~~~ 57 (96)
T 3tqm_A 28 QPCRDEISNIHII-FHINKL--KKIVDANVKLP 57 (96)
T ss_dssp CSSGGGCCEEEEE-EEEETT--EEEEEEEEEET
T ss_pred HHhcCCCeEEEEE-EEEeCC--ceEEEEEEEeC
Confidence 4589999999998 444443 56777777654
No 2
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB: 3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=8.18 E-value=3.2e+02 Score=20.36 Aligned_cols=30 Identities=3% Similarity=-0.153 Sum_probs=21.3
Q ss_pred cccCCceeeeeeeEecccCccceeeeEEeeccc
Q psy10822 121 IFIFPRMTKCTFFKYGVSGEVERHDAVCILPLN 153 (257)
Q Consensus 121 ~~~FPRVT~Cdf~~~r~~Gnv~~~tvqCVLpiN 153 (257)
...||+++-|++. +..-++ .+.+.+.++++
T Consensus 28 ~k~~d~i~~~~V~-ls~e~~--~~~veiti~~~ 57 (119)
T 3v2c_Y 28 EKWQTHLINPHII-LSKEPQ--GFVADATINTP 57 (119)
T ss_dssp GGGCCCCEEEEEE-EECCSS--CEEEEEEEEET
T ss_pred HHhcCCCeEEEEE-EEEeCC--CEEEEEEEEcC
Confidence 4589999999998 554453 56677776653
No 3
>3j0g_M E3 protein; alphavirus, bioweapon, VEEV; 4.80A {Venezuelan equine encephalitis virus}
Probab=7.93 E-value=1.9e+02 Score=19.39 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=17.6
Q ss_pred hhHhHhhccChHHHHHHHHHH
Q psy10822 221 LFYMLGENIDSVIFRDVMHDL 241 (257)
Q Consensus 221 lLr~i~~N~~~~~~~elv~~L 241 (257)
-|+|++.|++.=-+.|+++..
T Consensus 30 tL~mLe~Nvd~pgY~~LL~a~ 50 (59)
T 3j0g_M 30 TLAMLSVNVDNPGYDELLEAA 50 (59)
T ss_dssp HHHHHHHTSSSTTHHHHHHHH
T ss_pred HHHHHHHhCCCccHHHHHHHH
Confidence 478999999998888888764
No 4
>2fj6_A Hypothetical UPF0346 protein YOZE; SR391, structure, autostructure, northeast structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.60.15.1
Probab=7.39 E-value=1.8e+02 Score=20.80 Aligned_cols=28 Identities=14% Similarity=-0.011 Sum_probs=25.3
Q ss_pred hhhHhHhhccChHHHHHHHHHHHHHhcC
Q psy10822 220 FLFYMLGENIDSVIFRDVMHDLAARLAS 247 (257)
Q Consensus 220 flLr~i~~N~~~~~~~elv~~L~~~~~~ 247 (257)
=|.+.+..|++-...-++.+++|+.|..
T Consensus 42 eIs~Yle~n~~y~~sm~iFD~~We~Y~~ 69 (82)
T 2fj6_A 42 EISSYLELNADYLHTMATFDEAWDQYES 69 (82)
T ss_dssp HHHHHHHTSHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccchHHHHHHHHHHHHH
Confidence 5788999999999999999999999954
No 5
>2o6k_A UPF0346 protein MW1311; ZR218, NESG, structural genomics, PSI-2, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: a.60.15.1
Probab=6.98 E-value=1.8e+02 Score=20.77 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=25.3
Q ss_pred hhhHhHhhccChHHHHHHHHHHHHHhcC
Q psy10822 220 FLFYMLGENIDSVIFRDVMHDLAARLAS 247 (257)
Q Consensus 220 flLr~i~~N~~~~~~~elv~~L~~~~~~ 247 (257)
-|.+.+..|++-...-++.+++|+.|..
T Consensus 42 eIs~Yle~n~~y~~sm~iFD~~We~Y~~ 69 (81)
T 2o6k_A 42 ILSDYIETHGDFTLPMSVFDDLYEEYTE 69 (81)
T ss_dssp HHHHHHHHHCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccchHHHHHHHHHHHHH
Confidence 5788999999999999999999999964
No 6
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=6.28 E-value=1.3e+02 Score=20.87 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=18.9
Q ss_pred chhhHhHhhccChHHH-HHHHHHHHH
Q psy10822 219 WFLFYMLGENIDSVIF-RDVMHDLAA 243 (257)
Q Consensus 219 ~flLr~i~~N~~~~~~-~elv~~L~~ 243 (257)
.-+|.++..|.|.++. .++++.+|.
T Consensus 28 ~~lL~~L~~~~g~~vsr~~L~~~vw~ 53 (96)
T 3rjp_A 28 YDLLNILMTNMNRVMTREELLSNVWK 53 (96)
T ss_dssp HHHHHHHHHTTTSCBCHHHHHHHHSS
T ss_pred HHHHHHHHhCCCeeEcHHHHHHHHcC
Confidence 4678888889997665 567778884
No 7
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=6.26 E-value=2.5e+02 Score=20.35 Aligned_cols=28 Identities=4% Similarity=-0.079 Sum_probs=19.4
Q ss_pred ccCCceeeeeeeEecccCccceeeeEEeecc
Q psy10822 122 FIFPRMTKCTFFKYGVSGEVERHDAVCILPL 152 (257)
Q Consensus 122 ~~FPRVT~Cdf~~~r~~Gnv~~~tvqCVLpi 152 (257)
.+||+++-|++. +..-+ +.+.+.+.+++
T Consensus 29 r~~~~i~~~~V~-l~~e~--~~~~~ei~i~~ 56 (107)
T 1imu_A 29 KWQTQLISPHFV-LNKVP--NGFSVEASIGT 56 (107)
T ss_dssp TSSCCCSSCEEE-EEEET--TEEEEEEEECC
T ss_pred HhcCCCcEEEEE-EEEcC--CceEEEEEEEc
Confidence 479999999987 44444 45666666655
No 8
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=5.95 E-value=2.3e+02 Score=21.63 Aligned_cols=12 Identities=33% Similarity=0.124 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q psy10822 77 FLSLINVIGQMF 88 (257)
Q Consensus 77 ~L~l~Nvv~Q~~ 88 (257)
+||++|-|+|=-
T Consensus 60 ~lYL~NDVlqns 71 (142)
T 2km4_A 60 GLYLMNHVVQQA 71 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 467888888843
No 9
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=5.85 E-value=1.6e+02 Score=21.09 Aligned_cols=14 Identities=21% Similarity=0.976 Sum_probs=11.1
Q ss_pred hHHHHHHHhccCcH
Q psy10822 17 TPRWLWKHWEGGKI 30 (257)
Q Consensus 17 ~P~~iWk~~~gg~i 30 (257)
-|.|||.+.+.|++
T Consensus 71 ~p~WI~dcI~k~~L 84 (88)
T 3pc7_A 71 SPEWIWACIRKRRL 84 (88)
T ss_dssp CHHHHHHHHHHTSC
T ss_pred chHHHHHHHhCCcc
Confidence 48999999887753
No 10
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=5.85 E-value=1.7e+02 Score=21.39 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=20.2
Q ss_pred chhhHhHhhccChHHH-HHHHHHHHH
Q psy10822 219 WFLFYMLGENIDSVIF-RDVMHDLAA 243 (257)
Q Consensus 219 ~flLr~i~~N~~~~~~-~elv~~L~~ 243 (257)
.-+|.++..|.|.++. .++++.+|.
T Consensus 42 ~~lL~~L~~~~g~vvsr~~L~~~vW~ 67 (120)
T 2z9m_A 42 FELFHYLSKHMGQVMTREHLLQTVWG 67 (120)
T ss_dssp HHHHHHHHTTTTCCEEHHHHHHHHHC
T ss_pred HHHHHHHHHCCCceEcHHHHHHHHhC
Confidence 4788888899998877 568888885
Done!