Query psy10822
Match_columns 257
No_of_seqs 113 out of 418
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 19:24:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10822.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10822hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gxqa_ a.4.6.1 (A:) PhoB {Esc 10.1 33 0.0024 23.2 0.4 25 219-243 36-61 (105)
2 d1ys7a1 a.4.6.1 (A:128-233) Tr 8.1 58 0.0042 21.8 1.0 26 218-243 37-63 (106)
3 d2fj6a1 a.60.15.1 (A:1-74) Hyp 7.7 82 0.0059 20.5 1.6 28 220-247 42-69 (74)
4 d1opca_ a.4.6.1 (A:) OmpR {Esc 7.6 41 0.003 22.2 0.0 25 219-243 30-55 (99)
5 d2o6ka1 a.60.15.1 (A:4-73) Unc 7.1 69 0.005 20.6 0.9 28 220-247 39-66 (70)
6 d1xmec1 f.23.9.1 (C:2-34) Bact 7.0 2E+02 0.014 15.3 2.8 15 169-183 10-24 (33)
7 d1d4ta_ d.93.1.1 (A:) The Xlp 6.5 61 0.0045 21.3 0.5 21 204-224 13-33 (104)
8 d1unld_ a.74.1.1 (D:) CDK5 act 5.6 1.5E+02 0.011 21.5 2.2 20 222-241 126-145 (150)
9 d1p2fa1 a.4.6.1 (A:121-217) Re 5.5 64 0.0047 21.0 0.1 25 219-243 31-56 (97)
10 d1jyra_ d.93.1.1 (A:) Growth f 5.3 1E+02 0.0075 20.2 1.1 22 203-224 11-32 (96)
No 1
>d1gxqa_ a.4.6.1 (A:) PhoB {Escherichia coli [TaxId: 562]}
Probab=10.14 E-value=33 Score=23.16 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=20.8
Q ss_pred chhhHhHhhccChHHHHH-HHHHHHH
Q psy10822 219 WFLFYMLGENIDSVIFRD-VMHDLAA 243 (257)
Q Consensus 219 ~flLr~i~~N~~~~~~~e-lv~~L~~ 243 (257)
.-+|.++..|.|.++.+| +++.+|.
T Consensus 36 ~~lL~~L~~~~g~vvsr~~L~~~vw~ 61 (105)
T d1gxqa_ 36 FKLLHFFMTHPERVYSREQLLNHVWG 61 (105)
T ss_dssp HHHHHHHHHSCSSEECHHHHHHHHTC
T ss_pred HHHHHHHHhCccccccHHHHhccccC
Confidence 578999999999999854 7778885
No 2
>d1ys7a1 a.4.6.1 (A:128-233) Transcriptional regulatory protein PrrA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.08 E-value=58 Score=21.85 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=20.8
Q ss_pred cchhhHhHhhccChHHHHH-HHHHHHH
Q psy10822 218 DWFLFYMLGENIDSVIFRD-VMHDLAA 243 (257)
Q Consensus 218 g~flLr~i~~N~~~~~~~e-lv~~L~~ 243 (257)
.+-+|+++..|.|.++.+| +++.+|.
T Consensus 37 E~~lL~~L~~~~g~~vsr~~L~~~vw~ 63 (106)
T d1ys7a1 37 EFDLLAVLAEHKTAVLSRAQLLELVWG 63 (106)
T ss_dssp HHHHHHHHHHTTTCCBCHHHHHHHHHC
T ss_pred HhHHHHHHhhhhhhhhhHHHHHhhhcC
Confidence 3578899999999988755 7788884
No 3
>d2fj6a1 a.60.15.1 (A:1-74) Hypothetical protein YozE {Bacillus subtilis [TaxId: 1423]}
Probab=7.71 E-value=82 Score=20.49 Aligned_cols=28 Identities=14% Similarity=-0.011 Sum_probs=25.0
Q ss_pred hhhHhHhhccChHHHHHHHHHHHHHhcC
Q psy10822 220 FLFYMLGENIDSVIFRDVMHDLAARLAS 247 (257)
Q Consensus 220 flLr~i~~N~~~~~~~elv~~L~~~~~~ 247 (257)
=|.+.|..|++-+..-++.++.|+.|..
T Consensus 42 eiS~YLE~n~~~l~sm~~FD~aW~~Y~~ 69 (74)
T d2fj6a1 42 EISSYLELNADYLHTMATFDEAWDQYES 69 (74)
T ss_dssp HHHHHHHTSHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccchHHHHHHHHHHHHH
Confidence 5679999999999999999999999964
No 4
>d1opca_ a.4.6.1 (A:) OmpR {Escherichia coli [TaxId: 562]}
Probab=7.61 E-value=41 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=19.9
Q ss_pred chhhHhHhhccChHHHHH-HHHHHHH
Q psy10822 219 WFLFYMLGENIDSVIFRD-VMHDLAA 243 (257)
Q Consensus 219 ~flLr~i~~N~~~~~~~e-lv~~L~~ 243 (257)
.-+|+++..|.|.++++| +++.+|.
T Consensus 30 ~~lL~~L~~~~g~~vsr~~L~~~vwg 55 (99)
T d1opca_ 30 FAVLKALVSHPREPLSRDKLMNLARG 55 (99)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHCC
T ss_pred HHHHHHHHhccceeccHHHHHHHhcC
Confidence 468889999999998854 7778884
No 5
>d2o6ka1 a.60.15.1 (A:4-73) Uncharacterized protein MW1311 {Staphylococcus aureus [TaxId: 1280]}
Probab=7.05 E-value=69 Score=20.65 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=25.0
Q ss_pred hhhHhHhhccChHHHHHHHHHHHHHhcC
Q psy10822 220 FLFYMLGENIDSVIFRDVMHDLAARLAS 247 (257)
Q Consensus 220 flLr~i~~N~~~~~~~elv~~L~~~~~~ 247 (257)
-|.+.|..|++-+..-++.++.|+.|.+
T Consensus 39 eiS~YLE~n~~~~~sm~~FD~aW~~Yle 66 (70)
T d2o6ka1 39 ILSDYIETHGDFTLPMSVFDDLYEEYTE 66 (70)
T ss_dssp HHHHHHHHHCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccchHHHHHHHHHHHHH
Confidence 6789999999999999999999999854
No 6
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=6.96 E-value=2e+02 Score=15.26 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy10822 169 ALGLLTLFNVIYRIV 183 (257)
Q Consensus 169 ~l~vit~~~~i~~~~ 183 (257)
.++++++..+++|+-
T Consensus 10 vi~il~l~ilvfw~g 24 (33)
T d1xmec1 10 VILVLTLTILVFWLG 24 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455556666666654
No 7
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.48 E-value=61 Score=21.31 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=11.2
Q ss_pred hHHHHHHHhccCCCcchhhHh
Q psy10822 204 REAVETLVRRSKMGDWFLFYM 224 (257)
Q Consensus 204 ~~~~~~~~~~~~~~g~flLr~ 224 (257)
+++.+..+++.+.+|-||+|-
T Consensus 13 R~eAe~lL~~~~~~G~FLVR~ 33 (104)
T d1d4ta_ 13 RETGEKLLLATGLDGSYLLRD 33 (104)
T ss_dssp HHHHHHHHHHHCCTTEEEEEE
T ss_pred HHHHHHHHhhCCCCCeEEEEe
Confidence 445555555444445666653
No 8
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.58 E-value=1.5e+02 Score=21.54 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=17.7
Q ss_pred hHhHhhccChHHHHHHHHHH
Q psy10822 222 FYMLGENIDSVIFRDVMHDL 241 (257)
Q Consensus 222 Lr~i~~N~~~~~~~elv~~L 241 (257)
-+|+..|+++-.++|+..+|
T Consensus 126 ~kML~iN~dp~fFtevf~dL 145 (150)
T d1unld_ 126 SKMLQINADPHYFTQVFSDL 145 (150)
T ss_dssp HHHHHHHHCHHHHHHHHHHH
T ss_pred HHHhhhcCCcchHHHHHHHH
Confidence 47899999999999998876
No 9
>d1p2fa1 a.4.6.1 (A:121-217) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=5.51 E-value=64 Score=21.04 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=18.6
Q ss_pred chhhHhHhhccChHHH-HHHHHHHHH
Q psy10822 219 WFLFYMLGENIDSVIF-RDVMHDLAA 243 (257)
Q Consensus 219 ~flLr~i~~N~~~~~~-~elv~~L~~ 243 (257)
.-+|.++..|.|.++. .++.+.+|.
T Consensus 31 ~~lL~~L~~~~g~vvsr~~l~~~vw~ 56 (97)
T d1p2fa1 31 FEILLFLAENAGKVVTREKLLETFWE 56 (97)
T ss_dssp HHHHHHHHHTTTSCEEHHHHHHHHCS
T ss_pred HHHHHHHhhhhhhhhhhhhhheeeee
Confidence 5688888888886655 667777774
No 10
>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.30 E-value=1e+02 Score=20.18 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=11.6
Q ss_pred ChHHHHHHHhccCCCcchhhHh
Q psy10822 203 RREAVETLVRRSKMGDWFLFYM 224 (257)
Q Consensus 203 ~~~~~~~~~~~~~~~g~flLr~ 224 (257)
++.+.+..+.+.+-+|.||+|-
T Consensus 11 sR~~Ae~lL~~~~~~G~FLvR~ 32 (96)
T d1jyra_ 11 PRAKAEEMLSKQRHDGAFLIRE 32 (96)
T ss_dssp CHHHHHHHHHTCCSTTBEEEEE
T ss_pred CHHHHHHHHhhCCCCCeEEEEe
Confidence 3455555554443446666654
Done!