RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10822
(257 letters)
>gnl|CDD|216168 pfam00876, Innexin, Innexin. This family includes the drosophila
proteins Ogre and shaking-B, and the C. elegans proteins
Unc-7 and Unc-9. Members of this family are integral
membrane proteins which are involved in the formation of
gap junctions. This family has been named the Innexins.
Length = 341
Score = 244 bits (626), Expect = 2e-80
Identities = 94/247 (38%), Positives = 151/247 (61%), Gaps = 18/247 (7%)
Query: 12 AILFYTPRWLWK---HWEGGKIHALMMDLDVGICSEIEKRQKK-KLLLDYLWENLRYHN- 66
A+LFY P ++WK WEGG++ AL+ +L+ I SE ++R+K+ K L YL +NL HN
Sbjct: 97 ALLFYIPHYIWKLLSSWEGGRLKALVDELNSAILSEPDERKKRIKPLARYLDDNLHSHNR 156
Query: 67 ----WWAYRYYLCEFLSLINVIGQMFLMNRFFDGAFFTFGIDVITFMENDQEDRIDPMIF 122
+ AY Y+ C+ L+LINVIGQ+FL+NRF G F +GIDV+ + + ED D +F
Sbjct: 157 YYGNYLAYLYFFCKLLNLINVIGQIFLLNRFLGGDFHFYGIDVLADL-LNGEDWTDSGVF 215
Query: 123 IFPRMTKCTFFKYGVSGEVERHDAVCILPLNVVNEKIYVFLWFWFLALGLLTLFNVIYRI 182
PR+TKC F + G V+ + C+LP+N+ NEKI++FLWFWF+ L ++++ +++Y I
Sbjct: 216 --PRVTKCDFEIRKLGGSVQNYTVQCVLPINIFNEKIFIFLWFWFVFLAIISVLSLLYWI 273
Query: 183 VIIMSPR----MRVYLLRMRFRLIRREAVETLVRRSKMGDWFLFYMLGENIDSVIFRDVM 238
++SP R LLR +L + ++ WFL ML +N+ +++++++
Sbjct: 274 ATLLSPSRRVSFRKKLLRASSKLNPLDKFV--RDYLRIDGWFLLRMLAKNLGDLVYKELI 331
Query: 239 HDLAARL 245
+L R
Sbjct: 332 EELWQRF 338
>gnl|CDD|165115 PHA02748, PHA02748, viral inexin-like protein; Provisional.
Length = 360
Score = 234 bits (599), Expect = 4e-76
Identities = 98/243 (40%), Positives = 151/243 (62%), Gaps = 4/243 (1%)
Query: 12 AILFYTPRWLWKHWEGGKIHALMMDLDVGICSEIEKRQKKKLLLDYLWENLRYHNWWAYR 71
A+ FY P ++WK WEGGK+ L ++L + S+ + + L+DY + NL HN +AY+
Sbjct: 119 AVFFYIPHYIWKAWEGGKMKMLAVELASPVLSKDCIEKNTQPLVDYFFMNLHSHNAYAYK 178
Query: 72 YYLCEFLSLINVIGQMFLMNRFFDGAFFTFGIDVITFMENDQEDRIDPMIFIFPRMTKCT 131
Y+ CE L+LIN++GQ+ MN F F +GI VI F + + +PM +FP +TKCT
Sbjct: 179 YFTCELLNLINIVGQIQFMNIFIGEDFQLYGIYVIFFNQEAGKSMTNPMERLFPTVTKCT 238
Query: 132 FFKYGVSGEVERHDAVCILPLNVVNEKIYVFLWFWFLALGLLTLFNVIYRIVIIMSPRMR 191
+ KYG SG E + +C+L N +NEKIYVFLWFWF L +++ F VIYRI ++S +R
Sbjct: 239 YEKYGPSGTPENIEGICLLTQNSLNEKIYVFLWFWFHILAVISAFVVIYRIATLLSSSLR 298
Query: 192 VYLLRMRFRLIRREAVETLVRRSKMGDWFLFYMLGENIDSVIFRDVMHDLAARLASHPNK 251
+Y+ R L R + + + + ++GDWFL +ML +NI+ + ++ +L +RLA H +
Sbjct: 299 LYMFRSSSSLNRADDIAVVYNKLQIGDWFLLHMLRKNINPLAYK----ELISRLAQHFDV 354
Query: 252 SGL 254
S
Sbjct: 355 SVC 357
>gnl|CDD|233013 TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein.
Members of this protein family are uncharacterized
tetratricopeptide repeat (TPR) proteins invariably found
in heme biosynthesis gene clusters. The absence of any
invariant residues other than Ala argues against this
protein serving as an enzyme per se. The gene symbol
hemY assigned in E. coli is unfortunate in that an
unrelated protein, protoporphyrinogen oxidase (HemG in
E. coli) is designated HemY in Bacillus subtilis
[Unknown function, General].
Length = 367
Score = 28.4 bits (64), Expect = 3.9
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 165 FWFLALGLLTLFNVIY------RIVIIMSPRMRVYLLRMRFRLIRREAVETLV 211
F L L+ LF V+Y R V + R+R + R + R ++ E L+
Sbjct: 22 LNFFVLLLVLLFVVLYILLRLIRRVFRLPRRVRAWRSRRKQRRAQQATREGLI 74
>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl
glycosylphosphotransferase. Members of this family are
generally found near other genes involved in the
biosynthesis of a variety of exopolysaccharides. These
proteins consist of two fused domains, an N-terminal
hydrophobic domain of generally low conservation and a
highly conserved C-terminal sugar transferase domain
(pfam02397). Characterized and partially characterized
members of this subfamily include Salmonella WbaP
(originally RfbP) , E. coli WcaJ , Methylobacillus EpsB,
Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B
Streptococcus CpsE (originally CpsD), and Streptococcus
suis Cps2E. Each of these is believed to act in
transferring the sugar from, for instance, UDP-glucose
or UDP-galactose, to a lipid carrier such as
undecaprenyl phosphate as the first (priming) step in
the synthesis of an oligosaccharide "block". This
function is encoded in the C-terminal domain. The
liposaccharide is believed to be subsequently
transferred through a "flippase" function from the
cytoplasmic to the periplasmic face of the inner
membrane by the N-terminal domain. Certain closely
related transferase enzymes such as Sinorhizobium ExoY
and Lactococcus EpsD lack the N-terminal domain and are
not found by this model.
Length = 445
Score = 27.5 bits (62), Expect = 7.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 160 YVFLWFWFLALGLLTLFNVIYRIVIIMSPRMRVYLLR 196
V L ++ LAL LL L+ ++ R ++ + L R
Sbjct: 91 LVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGKNLRR 127
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 27.7 bits (62), Expect = 7.7
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 189 RMRVYLLRMRFRLIRREAVETLVRRSKMGDWFLFYMLGENIDS--VIFR 235
R V LR+R +R +E L R + +L Y LGE D I
Sbjct: 358 RAAVRELRIRQEAAKRAEIERLKDRGPITPAYLSYCLGEVADEYDAIVT 406
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.333 0.145 0.483
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,936,074
Number of extensions: 1390086
Number of successful extensions: 2390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2376
Number of HSP's successfully gapped: 48
Length of query: 257
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 162
Effective length of database: 6,723,972
Effective search space: 1089283464
Effective search space used: 1089283464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 58 (26.0 bits)