RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10822
         (257 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.3 bits (78), Expect = 0.047
 Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 72/209 (34%)

Query: 56  DYLWENLR--YHNWWAYRYYLCEFLSLINVIGQMFLMNRFFDGAFFTFGIDVITFMENDQ 113
           DY  E LR  Y     Y   + + +          +         FT G++++ ++EN  
Sbjct: 168 DYFEE-LRDLYQ---TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP- 222

Query: 114 EDRID-----------PMIF--------IFPRMTKCT---FFKY--GVSGEVERHD---A 146
            +  D           P+I         +  ++   T      Y  G +G  +      A
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ--GLVTA 280

Query: 147 VCI--------LPLNVVNEKIYVFLWFWFLALGL--------LTLFNVIYRIVI-----I 185
           V I          ++V   K    L F+   +G+         +L   I    +     +
Sbjct: 281 VAIAETDSWESFFVSVR--KAITVL-FF---IGVRCYEAYPNTSLPPSILEDSLENNEGV 334

Query: 186 MSPRM-RVYLLRMRFRLIRREAVETLVRR 213
            SP M  +         + +E V+  V +
Sbjct: 335 PSP-MLSI-------SNLTQEQVQDYVNK 355



 Score = 31.6 bits (71), Expect = 0.28
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 18/85 (21%)

Query: 185  IMSPRMRVYLLRMRFRLIRREAVETLVRRSKMGDWFLFYMLGENIDSV---IFRDVMHDL 241
            +MS    V ++  R   ++       + RS  G      M+  N   V     ++ +  +
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG------MIAINPGRVAASFSQEALQYV 1829

Query: 242  AARLASHP---------NKSGLQIA 257
              R+             N    Q  
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYV 1854


>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics,
           structural genomics consortium, SGC, NU MUTT-like,
           hydrolase, magnesium binding; 2.70A {Homo sapiens}
          Length = 218

 Score = 29.1 bits (65), Expect = 1.2
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 141 VERHDAVCILPLNVVNEKI 159
           ++ HD+V +L  N     +
Sbjct: 33  MKTHDSVTVLLFNSSRRSL 51


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 2.0
 Identities = 32/255 (12%), Positives = 62/255 (24%), Gaps = 83/255 (32%)

Query: 59  WENLRYHNWWAYRYYLCEFLSL-INVIGQMFLMNRFFDGAFFTFGIDVITFMEN------ 111
           W+N ++ N       L   +   +NV+        F         +    F  +      
Sbjct: 344 WDNWKHVNCDK----LTTIIESSLNVLEPAEYRKMFDR-----LSV----FPPSAHIPTI 390

Query: 112 ------DQEDRIDPMIFIFPRMTKCTFFKYGVSGEVERHDAVCILPLNVVNE-----KI- 159
                     + D M+ +          K      +        L + + NE      I 
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 160 --YVFL----------------WFWFLA--------LGLLTLFNVIYRIVIIMSPRMRVY 193
             Y                   ++  +            +TLF +++             
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF------------- 497

Query: 194 LLRMRF--RLIRREAVETLVRRSKMGDW--FLFY----MLGENIDSVIFRDVMHDL---A 242
            L  RF  + IR ++       S +       FY       +     +   ++  L    
Sbjct: 498 -LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Query: 243 ARLASHPNKSGLQIA 257
             L        L+IA
Sbjct: 557 ENLICSKYTDLLRIA 571


>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix
           fold, hydrolase; 1.90A {Escherichia coli} SCOP:
           d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
          Length = 209

 Score = 26.9 bits (60), Expect = 6.3
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 141 VERHDAVCILPLNVVNEKIY 160
            ER  A  +LP + V +++ 
Sbjct: 54  FERGHAAVLLPFDPVRDEVV 73


>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator,
           chaperone, periplasmic inner membrane, transmembrane;
           2.50A {Escherichia coli K12}
          Length = 330

 Score = 27.1 bits (60), Expect = 6.3
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 164 WFWFLALGLLTLFNVIYRIV 183
           W WF++  LL     +    
Sbjct: 308 WLWFISQPLLVPRGSLEHHH 327


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.333    0.145    0.483 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,312,871
Number of extensions: 260102
Number of successful extensions: 877
Number of sequences better than 10.0: 1
Number of HSP's gapped: 871
Number of HSP's successfully gapped: 19
Length of query: 257
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,133,061
Effective search space: 681955065
Effective search space used: 681955065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 56 (25.6 bits)