BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10824
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 72 YQSNTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTL 131
+ + LPE FD R+Q+ NC I ++ Q +CGSCWA A+SDR+CI T GR++ +
Sbjct: 1 FSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEV 60
Query: 132 SSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGS 174
S++ LLTCC GD C GG P AW + G+ +GG Y S
Sbjct: 61 SAEDLLTCCGI-QCGDGCNGGYPSGAWNFWTRKGLVSGGVYNS 102
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LPE FD R+Q+ NC I ++ Q +CGSCWA A+SDR+CI T GR++ +S++ LL
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGS 174
TCC GD C GG P AW + G+ +GG Y S
Sbjct: 61 TCCGI-QCGDGCNGGYPSGAWNFWTRKGLVSGGVYNS 96
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 72 YQSNTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTL 131
+ + LPE FD R+Q+ NC I ++ Q +CGS WA A+SDR+CI T GR++ +
Sbjct: 57 FSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEV 116
Query: 132 SSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGS 174
S++ LLTCC GD C GG P AW + G+ +GG Y S
Sbjct: 117 SAEDLLTCCGIQC-GDGCNGGYPSGAWNFWTRKGLVSGGVYNS 158
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 72 YQSNTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTL 131
+ + +LP FD R+Q+P C I ++ Q +CGSCWA A+SDR+CI T + +
Sbjct: 58 FTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEV 117
Query: 132 SSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGS 174
S++ LLTCC + GD C GG P AW + G+ +GG Y S
Sbjct: 118 SAEDLLTCCGSMC-GDGCNGGYPAEAWNFWTRKGLVSGGLYES 159
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 77 ELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHL 136
+LP FD R+Q+P C I ++ Q +CGSCWA A+SDR+CI T + +S++ L
Sbjct: 1 KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 60
Query: 137 LTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGS 174
LTCC + GD C GG P AW + G+ +GG Y S
Sbjct: 61 LTCCGSMC-GDGCNGGYPAEAWNFWTRKGLVSGGLYES 97
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 77 ELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHL 136
+LP FD R+Q+P C I ++ Q +CGSCWA A+SDR+CI T + +S++ L
Sbjct: 2 KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 61
Query: 137 LTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGS 174
LTCC + GD C GG P AW + G+ +GG Y S
Sbjct: 62 LTCCGSMC-GDGCNGGYPAEAWNFWTRKGLVSGGLYES 98
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP FD R+Q+P C I ++ Q +CGSCWA A+SDR+CI T + +S++ LL
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGS 174
TCC + GD C GG P AW + G+ +GG Y S
Sbjct: 61 TCCGSMC-GDGCNGGYPAEAWNFWTRKGLVSGGLYES 96
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 76 TELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDH 135
E+P FD RK++P C +I ++ QS CGSCWA A+SDR CI + G+ + LS+
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 136 LLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTG 169
LL+CC +C G CEGG AW Y ++ G+ TG
Sbjct: 61 LLSCCESCGLG--CEGGILGPAWDYWVKEGIVTG 92
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 72 YQSNTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTL 131
+ + +LP FD R+Q+P C I ++ Q +CGS WA A+SDR+CI T + +
Sbjct: 1 FTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEV 60
Query: 132 SSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGS 174
S++ LLTCC + GD C GG P AW + G+ +GG Y S
Sbjct: 61 SAEDLLTCCGSMC-GDGCNGGYPAEAWNFWTRKGLVSGGLYES 102
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 64 LGSEHFGDYQSNTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIAT 123
L F + ++ LP FD + +PNC I + QS CGSCWA+A +A+SDR C
Sbjct: 58 LPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFC-TM 116
Query: 124 QGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGSCQRFDRGNC 183
G D +S+ LL CC+ C GD C GG+P RAW Y G+ + DY CQ + +C
Sbjct: 117 GGVQDVHISAGDLLACCSDC--GDGCNGGDPDRAWAYFSSTGLVS--DY--CQPYPFPHC 170
Query: 184 N 184
+
Sbjct: 171 S 171
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 64 LGSEHFGDYQSNTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIAT 123
L F + ++ LP FD + +PNC I + QS CGSCWA+A +A+SDR C
Sbjct: 57 LPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFC-TM 115
Query: 124 QGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGSCQRFDRGNC 183
G D +S+ LL CC+ C GD C GG+P RAW Y G+ + DY CQ + +C
Sbjct: 116 GGVQDVHISAGDLLACCSDC--GDGCNGGDPDRAWAYFSSTGLVS--DY--CQPYPFPHC 169
Query: 184 N 184
+
Sbjct: 170 S 170
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 64 LGSEHFGDYQSNTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIAT 123
L F + ++ LP FD + +PNC I + QS CGSCWA+A +A+SDR C
Sbjct: 80 LPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFC-TM 138
Query: 124 QGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGSCQRFDRGNC 183
G D +S+ LL CC+ C GD C GG+P RAW Y G+ + DY CQ + +C
Sbjct: 139 GGVQDVHISAGDLLACCSDC--GDGCNGGDPDRAWAYFSSTGLVS--DY--CQPYPFPHC 192
Query: 184 N 184
+
Sbjct: 193 S 193
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LPE FD R+Q+PNC I ++ Q +CGSCWA A+SDR+CI + GR++ +S++ +L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGS 174
T C GD C GG P AW + + G+ +GG Y S
Sbjct: 61 T-CCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNS 96
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LPE FD R+Q+PNC I ++ Q +CGSCWA A+SDR+CI + GR++ +S++ +L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGS 174
T C GD C GG P AW + + G+ +GG Y S
Sbjct: 61 T-CCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNS 96
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 59.7 bits (143), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQG 125
LPE FD R+Q+PNC I ++ Q +CGSCWA A+SDR+CI + G
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNG 48
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 22/128 (17%)
Query: 71 DYQSNTELPEEFDLRKQYPNCTNIGHVQLQSN------CGSCWAIATTAALSDRMCIATQ 124
+Y S +LP+ +D R N + + + N CGSCWA A+T+A++DR+ I +
Sbjct: 29 EYLSPADLPKSWDWR----NVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRK 84
Query: 125 GRLDHT-LSSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVP--TGGDYGS----CQR 177
G T LS +++ C A + CEGGN + W Y ++G+P T +Y + C +
Sbjct: 85 GAWPSTLLSVQNVIDCGNAGS----CEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDK 140
Query: 178 FDR-GNCN 184
F++ G CN
Sbjct: 141 FNQCGTCN 148
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 54.7 bits (130), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIAT 123
LP FD R+Q+P C I ++ Q +CGSCWA A+SDR+CI T
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHT 46
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 22/121 (18%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSN------CGSCWAIATTAALSDRMCIATQGRLDHT- 130
LP+ +D R N + + + N CGSCWA A+T+A++DR+ I +G T
Sbjct: 1 LPKSWDWR----NVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTL 56
Query: 131 LSSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVP--TGGDYGS----CQRFDR-GNC 183
LS +++ C A + CEGGN + W Y ++G+P T +Y + C +F++ G C
Sbjct: 57 LSVQNVIDCGNAGS----CEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTC 112
Query: 184 N 184
N
Sbjct: 113 N 113
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 74 SNTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSS 133
++ P FD R Q + V+ Q +CGS WA ++T A+ +M IA D ++S
Sbjct: 112 ASVRYPASFDWRDQ----GMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSE 167
Query: 134 DHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGSCQRFDRGNCNC 185
L+ C G C GG A+ Y+ +NG G D ++ + NC
Sbjct: 168 QQLVDCVPNALG---CSGGWMNDAFTYVAQNG---GIDSEGAYPYEMADGNC 213
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D RK+ + V+ Q CGSCWA + T AL +M T G+L +LS +L+
Sbjct: 1 LPKSVDWRKK----GYVTPVKNQKQCGSCWAFSATGALEGQMFRKT-GKL-VSLSEQNLV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENG 165
C+ G C GG RA+ Y+ ENG
Sbjct: 55 D-CSRPQGNQGCNGGFMARAFQYVKENG 81
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R++ C + V+ Q +CG+CWA + AL ++ + T G+L TLS+ +L+
Sbjct: 1 LPDSVDWREK--GC--VTEVKYQGSCGACWAFSAVGALEAQLKLKT-GKL-VTLSAQNLV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
C G C GG A+ Y+++N G+ + Y
Sbjct: 55 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 90
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 75 NTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSD 134
N LP+ D R++ C + V+ Q +CG+CWA + AL ++ + T G+L +LS+
Sbjct: 1 NRILPDSVDWREK--GC--VTEVKYQGSCGACWAFSAVGALEAQLKLKT-GKL-VSLSAQ 54
Query: 135 HLLTCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
+L+ C G C GG A+ Y+++N G+ + Y
Sbjct: 55 NLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 93
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 76 TELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDH 135
+ELP D R + C + V+ Q +CGSCWA +TT AL C T G+L +LS
Sbjct: 5 SELPAGVDWRSR--GC--VTPVKDQRDCGSCWAFSTTGALEGAHCAKT-GKL-VSLSEQE 58
Query: 136 LLTCCAACTGGDVCEGGNPMRAWYYMLENG 165
L+ C A G C GG A+ Y+L++G
Sbjct: 59 LMDCSRA-EGNQSCSGGEMNDAFQYVLDSG 87
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R++ C + V+ Q +CG+CWA + AL ++ + T G+L +LS+ +L+
Sbjct: 1 LPDSVDWREK--GC--VTEVKYQGSCGACWAFSAVGALEAQLKLKT-GKLV-SLSAQNLV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
C G C GG A+ Y+++N G+ + Y
Sbjct: 55 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 90
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R++ C + V+ Q +CG+CWA + AL ++ + T G+L +LS+ +L+
Sbjct: 1 LPDSVDWREK--GC--VTEVKYQGSCGACWAFSAVGALEAQLKLKT-GKL-VSLSAQNLV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
C G C GG A+ Y+++N G+ + Y
Sbjct: 55 DCSTKKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 90
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R++ C + V+ Q +CG+CWA + AL ++ + T G+L +LS+ +L+
Sbjct: 2 LPDSVDWREK--GC--VTEVKYQGSCGACWAFSAVGALEAQLKLKT-GKL-VSLSAQNLV 55
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
C G C GG A+ Y+++N G+ + Y
Sbjct: 56 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 91
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R++ C + V+ Q +CG+CWA + AL ++ + T G+L +LS+ +L+
Sbjct: 1 LPDSVDWREK--GC--VTEVKYQGSCGACWAFSAVGALEAQLKLKT-GKL-VSLSAQNLV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
C G C GG A+ Y+++N G+ + Y
Sbjct: 55 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 90
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R++ C + V+ Q +CG+CWA + AL ++ + T G+L +LS+ +L+
Sbjct: 1 LPDSVDWREK--GC--VTEVKYQGSCGACWAFSAVGALEAQLKLKT-GKL-VSLSAQNLV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
C G C GG A+ Y+++N G+ + Y
Sbjct: 55 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 90
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R++ C + V+ Q +CG+CWA + AL ++ + T G+L +LS+ +L+
Sbjct: 2 LPDSVDWREK--GC--VTEVKYQGSCGACWAFSAVGALEAQLKLKT-GKL-VSLSAQNLV 55
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
C G C GG A+ Y+++N G+ + Y
Sbjct: 56 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 91
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D RK+ + V+ Q CGS WA + T AL +M T G+L +LS +L+
Sbjct: 1 LPKSVDWRKK----GYVTPVKNQKQCGSXWAFSATGALEGQMFRKT-GKL-VSLSEQNLV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENG 165
C+ G C GG RA+ Y+ ENG
Sbjct: 55 D-CSRPQGNQGCNGGFMARAFQYVKENG 81
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 75 NTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSD 134
N LP+ D R++ C + V+ Q +CG+ WA + AL ++ + T G+L +LS+
Sbjct: 96 NRILPDSVDWREK--GC--VTEVKYQGSCGAAWAFSAVGALEAQLKLKT-GKLV-SLSAQ 149
Query: 135 HLLTCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
+L+ C G C GG A+ Y+++N G+ + Y
Sbjct: 150 NLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 188
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
P D RK+ + V+ Q +CGSCW +TT AL + IAT L +L+ L+
Sbjct: 2 PPSMDWRKK---GNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKML--SLAEQQLVD 56
Query: 139 CCAACTGGDVCEGGNPMRAWYYMLENGVPTGGD 171
CA C+GG P +A+ Y+ N G D
Sbjct: 57 -CAQNFNNHGCQGGLPSQAFEYIRYNKGIMGED 88
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LPE+ D RK+ + V+ Q CGSCWA +T + + I T + +LS L+
Sbjct: 1 LPEQIDWRKK----GAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLI--SLSEQQLV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENG 165
C G C+GG + A+ Y+++NG
Sbjct: 55 DCNKKNHG---CKGGAFVYAYQYIIDNG 79
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LPE D RK+ + V+ Q +CGSCWA + A + I T G+L LS L+
Sbjct: 107 LPENVDWRKK----GAVTPVRHQGSCGSCWAFSAVATVEGINKIRT-GKLVE-LSEQELV 160
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGV------PTGGDYGSCQ 176
C G C+GG P A Y+ +NG+ P G+C+
Sbjct: 161 DCERRSHG---CKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCR 202
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R++ C + V+ Q +CG+ WA + AL ++ + T G+L +LS+ +L+
Sbjct: 1 LPDSVDWREK--GC--VTEVKYQGSCGASWAFSAVGALEAQLKLKT-GKL-VSLSAQNLV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
C G C GG A+ Y+++N G+ + Y
Sbjct: 55 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 90
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R++ C + V+ Q +CG+ WA + AL ++ + T G+L +LS+ +L+
Sbjct: 1 LPDSVDWREK--GC--VTEVKYQGSCGASWAFSAVGALEAQLKLKT-GKL-VSLSAQNLV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
C G C GG A+ Y+++N G+ + Y
Sbjct: 55 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 90
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R++ C + V+ Q +CG+ WA + AL ++ + T G+L +LS+ +L+
Sbjct: 2 LPDSVDWREK--GC--VTEVKYQGSCGASWAFSAVGALEAQLKLKT-GKL-VSLSAQNLV 55
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
C G C GG A+ Y+++N G+ + Y
Sbjct: 56 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 91
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R++ C + V+ Q +CG+ WA + AL ++ + T G+L +LS+ +L+
Sbjct: 3 LPDSVDWREK--GC--VTEVKYQGSCGASWAFSAVGALEAQLKLKT-GKL-VSLSAQNLV 56
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
C G C GG A+ Y+++N G+ + Y
Sbjct: 57 DCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY 92
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LPE D RK+ + V+ Q +CGSCWA + A + I T G+L LS L+
Sbjct: 1 LPENVDWRKK----GAVTPVRHQGSCGSCWAFSAVATVEGINKIRT-GKLVE-LSEQELV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGV 166
C G C+GG P A Y+ +NG+
Sbjct: 55 DCERRSHG---CKGGYPPYALEYVAKNGI 80
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LPE D RK+ + V+ Q +CGSCWA + A + I T G+L LS L+
Sbjct: 1 LPENVDWRKK----GAVTPVRHQGSCGSCWAFSAVATVEGINKIRT-GKLVE-LSEQELV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGV 166
C G C+GG P A Y+ +NG+
Sbjct: 55 DCERRSHG---CKGGYPPYALEYVAKNGI 80
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 77 ELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHL 136
E P D R++ + V+ Q CGSCWA + T AL +M T GRL +LS +L
Sbjct: 38 EAPRSVDWREK----GYVTPVKNQGQCGSCWAFSATGALEGQMFRKT-GRL-ISLSEQNL 91
Query: 137 LTCCAACTGGDVCEGGNPMRAWYYMLENG 165
+ C+ G + C GG A+ Y+ +NG
Sbjct: 92 VD-CSGPQGNEGCNGGLMDYAFQYVQDNG 119
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 77 ELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHL 136
E P D R++ + V+ Q CGSCWA + T AL +M T GRL +LS +L
Sbjct: 1 EAPRSVDWREK----GYVTPVKNQGQCGSCWAFSATGALEGQMFRKT-GRL-ISLSEQNL 54
Query: 137 LTCCAACTGGDVCEGGNPMRAWYYMLENG 165
+ C+ G + C GG A+ Y+ +NG
Sbjct: 55 VD-CSGPQGNEGCNGGLMDYAFQYVQDNG 82
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 15/108 (13%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
PE D R++ + V+ Q+ CGSCWA +T A + I T G+L +LS LL
Sbjct: 2 PESIDWREK----GAVTPVKNQNPCGSCWAFSTVATIEGINKIIT-GQLI-SLSEQELLD 55
Query: 139 CCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDY------GSCQRFDR 180
C G C+GG + Y+++NGV T +Y G C+ D+
Sbjct: 56 CERRSHG---CDGGYQTTSLQYVVDNGVHTEREYPYEKKQGRCRAKDK 100
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 97 VQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMR 156
V+ Q CGSCWA + T AL +M T GRL +LS +L+ C+ G + C GG
Sbjct: 16 VKNQGQCGSCWAFSATGALEGQMFRKT-GRL-ISLSEQNLVD-CSGPQGNEGCNGGLMDY 72
Query: 157 AWYYMLENG 165
A+ Y+ +NG
Sbjct: 73 AFQYVQDNG 81
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 97 VQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMR 156
V+ Q CGSCWA + T AL +M T GRL +LS +L+ C+ G + C GG
Sbjct: 16 VKNQGQCGSCWAFSATGALEGQMFRKT-GRL-ISLSEQNLVD-CSGPQGNEGCNGGLMDY 72
Query: 157 AWYYMLENG 165
A+ Y+ +NG
Sbjct: 73 AFQYVQDNG 81
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 97 VQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMR 156
V+ Q CGSCWA + T AL +M T GRL +LS +L+ C+ G + C GG
Sbjct: 16 VKNQGQCGSCWAFSATGALEGQMFRKT-GRL-ISLSEQNLVD-CSGPQGNEGCNGGLMDY 72
Query: 157 AWYYMLENG 165
A+ Y+ +NG
Sbjct: 73 AFQYVQDNG 81
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LPE+ D RK+ + V+ Q +CGSCWA +T + + I T + +LS L+
Sbjct: 1 LPEQIDWRKK----GAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLI--SLSEQELV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENG 165
C G C GG + A+ Y++ NG
Sbjct: 55 DCDKKNHG---CLGGAFVFAYQYIINNG 79
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 77 ELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHL 136
+LP+ D R+ + V+ Q CGSCWA +T AA+ I T + +LS L
Sbjct: 2 DLPDSIDWRENGA----VVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLI--SLSEQQL 55
Query: 137 LTCCAACTGGDVCEGGNPMRAWYYMLENG 165
+ C A G C GG A+ +++ NG
Sbjct: 56 VDCTTANHG---CRGGWMNPAFQFIVNNG 81
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 74 SNTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSS 133
++ +P E DLR + + +++Q CGSCWA + AA LD S
Sbjct: 7 NSVNVPSELDLR----SLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLD---LS 59
Query: 134 DHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGSCQRFDR 180
+ L CA+ G C G R Y+ +NGV Y R R
Sbjct: 60 EQELVDCASQHG---CHGDTIPRGIEYIQQNGVVEERSYPYVAREQR 103
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 77 ELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHL 136
E P D R++ + V+ Q CGS WA + T AL +M T GRL +LS +L
Sbjct: 1 EAPRSVDWREK----GYVTPVKNQGQCGSAWAFSATGALEGQMFRKT-GRL-ISLSEQNL 54
Query: 137 LTCCAACTGGDVCEGGNPMRAWYYMLENG 165
+ C+ G + C GG A+ Y+ +NG
Sbjct: 55 VD-CSGPQGNEGCNGGLMDYAFQYVQDNG 82
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 76 TELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDH 135
++LP D R++ + V+ Q CGSCWA +T ++ I T + +LS
Sbjct: 2 SDLPPSVDWRQK----GAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLV--SLSEQE 55
Query: 136 LLTCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDYGSCQRFDRGNCNC 185
L+ C A G C+GG A+ Y+ N G+ T Y R RG CN
Sbjct: 56 LIDCDTADNDG--CQGGLMDNAFEYIKNNGGLITEAAY--PYRAARGTCNV 102
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 77 ELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHL 136
E P D R++ + V+ Q CGS WA + T AL +M T GRL +LS +L
Sbjct: 92 EAPRSVDWREK----GYVTPVKNQGQCGSSWAFSATGALEGQMFRKT-GRLI-SLSEQNL 145
Query: 137 LTCCAACTGGDVCEGGNPMRAWYYMLENG 165
+ C+ G + C GG A+ Y+ +NG
Sbjct: 146 VD-CSGPEGNEGCNGGLMDYAFQYVQDNG 173
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LPE D R + + ++ Q CGSCWA +T + I T + +LS L+
Sbjct: 1 LPEHVDWRAK----GAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLI--SLSEQQLV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENG 165
C G C+GG RA+ Y++ NG
Sbjct: 55 DCSKKNHG---CKGGYFDRAYQYIIANG 79
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 77 ELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHL 136
E P D R++ + V+ Q CGS WA + T AL +M T GRL +LS +L
Sbjct: 96 EAPRSVDWREK----GYVTPVKNQGQCGSXWAFSATGALEGQMFRKT-GRLI-SLSEQNL 149
Query: 137 LTCCAACTGGDVCEGGNPMRAWYYMLENG 165
+ C+ G + C GG A+ Y+ +NG
Sbjct: 150 VD-CSGPQGNEGCNGGLMDYAFQYVQDNG 177
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP D R + + ++ Q CGSCWA + AA+ I T G+L +LS L+
Sbjct: 1 LPSFVDWRSK----GAVNSIKNQKQCGSCWAFSAVAAVESINKIRT-GQLI-SLSEQELV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENG 165
C A G C GG A+ Y++ NG
Sbjct: 55 DCDTASHG---CNGGWMNNAFQYIITNG 79
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 75 NTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSD 134
N P E DLR+ + +++Q CGSCWA + AA Q LD ++
Sbjct: 7 NGNAPAEIDLRQM----RTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLD---LAE 59
Query: 135 HLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGSCQR 177
L CA+ G C G R Y+ NGV Y R
Sbjct: 60 QELVDCASQHG---CHGDTIPRGIEYIQHNGVVQESYYRYVAR 99
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 94 IGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGN 153
+ V+ Q CGS W+ +TT A+ ++ + +GRL T S+ L C++ G C+GG
Sbjct: 127 VSEVKDQGQCGSSWSFSTTGAVEGQLAL-QRGRL--TSLSEQNLIDCSSSYGNAGCDGGW 183
Query: 154 PMRAWYYMLENGVPTGGDY-----GSCQRFD 179
A+ Y+ + G+ + Y G RFD
Sbjct: 184 MDSAFSYIHDYGIMSESAYPYEAQGDYCRFD 214
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 73 QSNTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLS 132
Q LPE +D R + V+ Q +CGSC++ A+ L R+ I T LS
Sbjct: 201 QQILSLPESWDWR-NVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILS 259
Query: 133 SDHLLTCCAACTGGDVCEGGNP 154
+++C G C+GG P
Sbjct: 260 PQEVVSCSPYAQG---CDGGFP 278
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP +D R + + V+ Q++CGSC++ A+ L R+ I T LS ++
Sbjct: 207 LPTSWDWRNVH-GINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVV 265
Query: 138 TCCAACTGGDVCEGGNP 154
+C G CEGG P
Sbjct: 266 SCSQYAQG---CEGGFP 279
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 97 VQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMR 156
V+ Q CGS WA + T AL +M T GRL +LS +L+ C+ G + C GG
Sbjct: 16 VKNQGQCGSAWAFSATGALEGQMFRKT-GRL-ISLSEQNLVD-CSGPQGNEGCNGGLMDY 72
Query: 157 AWYYMLENG 165
A+ Y+ +NG
Sbjct: 73 AFQYVQDNG 81
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
P+ D RK+ + V+ Q CGSCWA ++ AL ++ AT L+ L+ +L+
Sbjct: 2 PDSIDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLN--LAPQNLVD 55
Query: 139 CCAACTGGDVCEGGNPMRAWYYMLEN 164
C + D C GG A+ Y+ N
Sbjct: 56 CVSE---NDGCGGGYMTNAFQYVQRN 78
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 97 VQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMR 156
V+ Q CGS WA + T AL +M T GRL +LS +L+ C+ G + C GG
Sbjct: 16 VKNQGQCGSXWAFSATGALEGQMFRKT-GRL-ISLSEQNLVD-CSGPQGNEGCNGGLMDY 72
Query: 157 AWYYMLENG 165
A+ Y+ +NG
Sbjct: 73 AFQYVQDNG 81
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 97 VQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMR 156
V+ Q NCGSCWA ++ ++ + I + TLS L+ C G C GG
Sbjct: 33 VKDQKNCGSCWAFSSIGSVESQYAIRKNKLI--TLSEQELVDCSFKNYG---CNGGLINN 87
Query: 157 AWYYMLE-NGVPTGGDY 172
A+ M+E G+ GDY
Sbjct: 88 AFEDMIELGGICPDGDY 104
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
P+ D RK+ + V+ Q CGSCWA ++ AL ++ T L+ LS +L+
Sbjct: 4 PDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVD 57
Query: 139 CCAACTGGDVCEGGNPMRAWYYMLEN 164
C + D C GG A+ Y+ +N
Sbjct: 58 CVSE---NDGCGGGYMTNAFQYVQKN 80
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
P+ D RK+ + V+ Q CGSCWA ++ AL ++ T L+ LS +L+
Sbjct: 1 PDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVD 54
Query: 139 CCAACTGGDVCEGGNPMRAWYYMLEN 164
C + D C GG A+ Y+ +N
Sbjct: 55 CVSE---NDGCGGGYMTNAFQYVQKN 77
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 97 VQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMR 156
V+ Q CGS WA + T AL +M T GRL +LS +L+ C+ G + C GG
Sbjct: 16 VKNQGQCGSXWAFSATGALEGQMFRKT-GRL-ISLSEQNLVD-CSGPQGNEGCNGGLMDY 72
Query: 157 AWYYMLENG 165
A+ Y+ +NG
Sbjct: 73 AFQYVQDNG 81
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
P+ D RK+ + V+ Q CGSCWA ++ AL ++ T L+ LS +L+
Sbjct: 2 PDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVD 55
Query: 139 CCAACTGGDVCEGGNPMRAWYYMLEN 164
C + D C GG A+ Y+ +N
Sbjct: 56 CVSE---NDGCGGGYMTNAFQYVQKN 78
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 97 VQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMR 156
V+ Q CGS WA + T AL +M T GRL +LS +L+ C+ G + C GG
Sbjct: 16 VKNQGQCGSXWAFSATGALEGQMFRKT-GRL-ISLSEQNLVD-CSGPQGNEGCNGGLMDY 72
Query: 157 AWYYMLENG 165
A+ Y+ +NG
Sbjct: 73 AFQYVQDNG 81
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP +D R + + V+ Q++CGSC++ A+ L R+ I T LS ++
Sbjct: 1 LPTSWDWRNVH-GINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVV 59
Query: 138 TCCAACTGGDVCEGGNP 154
+C G CEGG P
Sbjct: 60 SCSQYAQG---CEGGFP 73
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
P+ D RK+ + V+ Q CGSCWA ++ AL ++ T L+ LS +L+
Sbjct: 2 PDSIDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVD 55
Query: 139 CCAACTGGDVCEGGNPMRAWYYMLEN 164
C + D C GG A+ Y+ N
Sbjct: 56 CVSE---NDGCGGGYMTNAFQYVQRN 78
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 74 SNTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSS 133
+N +P++ D R+ + V+ Q NCGS WA +TT + + + + S
Sbjct: 88 NNRAVPDKIDWRE----SGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISF---S 140
Query: 134 DHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDY 172
+ L C+ G + C GG A+ Y+ + G+ T Y
Sbjct: 141 EQQLVDCSRPWGNNGCGGGLMENAYQYLKQFGLETESSY 179
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
P+ D RK+ + V+ Q CGSCWA ++ AL ++ T L+ LS +L+
Sbjct: 101 PDSVDYRKK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVD 154
Query: 139 CCAACTGGDVCEGGNPMRAWYYMLEN 164
C + G C GG A+ Y+ +N
Sbjct: 155 CVSENDG---CGGGYMTNAFQYVQKN 177
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 75 NTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSD 134
N P E DLR+ + +++Q CGSCWA + AA LD ++
Sbjct: 7 NGNAPAEIDLRQM----RTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLD---LAE 59
Query: 135 HLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGSCQR 177
L CA+ G C G R Y+ NGV Y R
Sbjct: 60 QELVDCASQHG---CHGDTIPRGIEYIQHNGVVQESYYRYVAR 99
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 77 ELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHL 136
+ PE +D K+ I V+ Q CGS WA + T A+ IAT + +LS L
Sbjct: 1 DAPESWDWSKK----GVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLV--SLSEQEL 54
Query: 137 LTCCAACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDY 172
+ C G C G +++ +++++ G+ + DY
Sbjct: 55 IDCVDESEG---CYNGWHYQSFEWVVKHGGIASEADY 88
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 131 LSSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGS 174
+S++ LLTCC + G D C GG P AW + G+ +GG Y S
Sbjct: 5 VSAEDLLTCCGSMCG-DGCNGGYPAEAWNFWTRKGLVSGGLYES 47
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
P+ D R++ + V+ Q CGSCWA ++ AL ++ T L+ LS +L+
Sbjct: 2 PDSVDYREK----GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVD 55
Query: 139 CCAACTGGDVCEGGNPMRAWYYMLEN 164
C + D C GG A+ Y+ +N
Sbjct: 56 CVSE---NDGCGGGYMTNAFQYVQKN 78
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R + + ++ Q CGSCWA +T AA+ IAT D S+ L
Sbjct: 1 LPDYVDWR----SSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATG---DLISLSEQEL 53
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENG 165
C C+GG + +++ NG
Sbjct: 54 VDCGRTQNTRGCDGGFMTDGFQFIINNG 81
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 97 VQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMR 156
V+ Q CGSCWA ++ AL ++ T L+ LS +L+ C + D C GG
Sbjct: 14 VKNQGQCGSCWAFSSVGALEGQLKKKTGKLLN--LSPQNLVDCVSE---NDGCGGGYMTN 68
Query: 157 AWYYMLEN 164
A+ Y+ +N
Sbjct: 69 AFQYVQKN 76
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 75 NTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSD 134
N P E DLR+ + +++Q CGS WA + AA Q LD ++
Sbjct: 7 NGNAPAEIDLRQM----RTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLD---LAE 59
Query: 135 HLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGSCQR 177
L CA+ G C G R Y+ NGV Y R
Sbjct: 60 QELVDCASQHG---CHGDTIPRGIEYIQHNGVVQESYYRYVAR 99
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 97 VQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMR 156
V+ Q NCGS WA ++ ++ + I + TLS L+ C G C GG
Sbjct: 32 VKDQKNCGSAWAFSSIGSVESQYAIRKNKLI--TLSEQELVDCSFKNYG---CNGGLINN 86
Query: 157 AWYYMLE-NGVPTGGDY 172
A+ M+E G+ GDY
Sbjct: 87 AFEDMIELGGICPDGDY 103
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
+PE D R++ + V+ Q +CGSCWA + + + I T G L+ S LL
Sbjct: 1 IPEYVDWRQK----GAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRT-GNLNQ-YSEQELL 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGV 166
C G C GG P A + + G+
Sbjct: 55 DCDRRSYG---CNGGYPWSALQLVAQYGI 80
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
+PE D R++ + V+ Q +CGSCWA + + + I T G L+ S LL
Sbjct: 1 IPEYVDWRQK----GAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRT-GNLNE-YSEQELL 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGV 166
C G C GG P A + + G+
Sbjct: 55 DCDRRSYG---CNGGYPWSALQLVAQYGI 80
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
P+ D R + + V+ Q CGS WA +T A + I T L+ LS L+
Sbjct: 2 PQSIDWRAK----GAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLE--LSEQELVD 55
Query: 139 CCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDY 172
C G C+GG + Y+ NGV T Y
Sbjct: 56 CDKHSYG---CKGGYQTTSLQYVANNGVHTSKVY 86
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
PE D R++ + V+ Q +CGSCWA + + + I T G L+ S LL
Sbjct: 2 PEYVDWRQK----GAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRT-GNLNQ-YSEQELLD 55
Query: 139 CCAACTGGDVCEGGNPMRAWYYMLENGV 166
C G C GG P A + + G+
Sbjct: 56 CDRRSYG---CNGGYPWSALQLVAQYGI 80
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 75 NTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSD 134
N P E DLR+ + +++Q CGS WA + AA LD ++
Sbjct: 87 NGNAPAEIDLRQ----MRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLD---LAE 139
Query: 135 HLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGSCQR 177
L CA+ G C G R Y+ NGV Y R
Sbjct: 140 QELVDCASQHG---CHGDTIPRGIEYIQHNGVVQESYYRYVAR 179
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 97 VQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMR 156
V+ Q CG+ +A + T AL +M T GRL +LS +L+ C + G + C GG
Sbjct: 16 VKNQGQCGASYAFSATGALEGQMFRKT-GRLI-SLSEQNLVDC-SGPQGNEGCNGGLMDY 72
Query: 157 AWYYMLENG 165
A+ Y+ +NG
Sbjct: 73 AFQYVQDNG 81
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 75 NTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSD 134
+ +PE D R++ + V+ Q +CGS WA + + + + I T G L+ S
Sbjct: 149 DVNIPEYVDWRQK----GAVTPVKNQGSCGSAWAFSAVSTIESIIKIRT-GNLNE-YSEQ 202
Query: 135 HLLTCCAACTGGDVCEGGNPMRAWYYMLENGV 166
LL C G C GG P A + + G+
Sbjct: 203 ELLDCDRRSYG---CNGGYPWSALQLVAQYGI 231
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
+P D RK+ + V+ Q CGSCWA +T A+ I T + +LS L+
Sbjct: 2 VPASVDWRKKGA----VTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLV--SLSEQELV 55
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENG 165
C G C GG A+ ++ + G
Sbjct: 56 DCDTDQNQG--CNGGLMDYAFEFIKQRG 81
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
P D RK+ + V+ Q CG CWA T A+ I T GRL ++S ++
Sbjct: 2 PASIDWRKKGA----VTSVKDQGACGMCWAFGATGAIEGIDAI-TTGRL-ISVSEQQIVD 55
Query: 139 CCAACTGGDVCEGGNPMRAWYYMLENG 165
C T GG+ A+ +++ NG
Sbjct: 56 C---DTXXXXXXGGDADDAFRWVITNG 79
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP+ D R + + ++ Q CGS WA +T AA+ IAT D S+ L
Sbjct: 1 LPDYVDWR----SSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATG---DLISLSEQEL 53
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENG 165
C C+GG + +++ NG
Sbjct: 54 VDCGRTQNTRGCDGGFMTDGFQFIINNG 81
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
+PE D R++ + V+ Q +CGS WA + + + I T G L+ S LL
Sbjct: 1 IPEYVDWRQK----GAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRT-GNLNQ-YSEQELL 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGV 166
C G C GG P A + + G+
Sbjct: 55 DCDRRSYG---CNGGYPWSALQLVAQYGI 80
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
+PE D R++ + V+ Q +CGS WA + + + I T G L+ S LL
Sbjct: 1 IPEYVDWRQK----GAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRT-GNLNQ-YSEQELL 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGV 166
C G C GG P A + + G+
Sbjct: 55 DCDRRSYG---CNGGYPWSALQLVAQYGI 80
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
+PE D R++ + V+ Q +CGS WA + + + I T G L+ S LL
Sbjct: 1 IPEYVDWRQK----GAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRT-GNLNE-YSEQELL 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGV 166
C G C GG P A + + G+
Sbjct: 55 DCDRRSYG---CNGGYPWSALQLVAQYGI 80
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LPE D R + + V+ Q C SCWA +T A + I T ++ LS L+
Sbjct: 1 LPESVDWRAK----GAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVE--LSEQELV 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDY 172
C G C G + Y+ +NG+ Y
Sbjct: 55 DCDLQSYG---CNRGYQSTSLQYVAQNGIHLRAKY 86
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 97 VQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMR 156
V+ Q+ CGSCWA ++ ++ + I + L S+ L C+ G C GG
Sbjct: 35 VKDQALCGSCWAFSSVGSVESQYAIRKKALF---LFSEQELVDCSVKNNG--CYGGYITN 89
Query: 157 AWYYMLENG 165
A+ M++ G
Sbjct: 90 AFDDMIDLG 98
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
+P D R++ + V+ Q CGSCW ++ AA+ I T +LS LL
Sbjct: 1 IPTSIDWRQK----GAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTG--QLLSLSEQELL 54
Query: 138 TCCAACTGGDVCEGGNPMRAWYYMLENGV 166
C G C GG P+ A Y+ +G+
Sbjct: 55 DCERRSYG---CRGGFPLYALQYVANSGI 80
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL 137
LP D R + + ++ Q CG CWA + A + I T + +LS L+
Sbjct: 1 LPSYVDWR----SAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLI--SLSEQELI 54
Query: 138 TC-----CAACTGGDVCEG 151
C C GG + +G
Sbjct: 55 DCGRTQNTRGCNGGYITDG 73
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT 138
P D R++ + V+ Q CGSCWA +T + + +A G +LS L++
Sbjct: 2 PAAVDWREKGA----VTPVKDQGQCGSCWAFSTIGNIEGQWQVA--GNPLVSLSEQMLVS 55
Query: 139 C 139
C
Sbjct: 56 C 56
>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase
Length = 247
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 149 CEGGNPMRAWYYMLENGVPTGGDYGSCQRFDRGNCN 184
CE G + +YY G GG Y + +R + NC
Sbjct: 191 CEDGALSQLYYYFNVKGSAIGGTYVASERLEDSNCK 226
>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases
As Antitumorigenic Agents
Length = 237
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 149 CEGGNPMRAWYYMLENGVPTGGDYGSCQRFDRGNCN 184
CE G + +YY G GG Y + +R + NC
Sbjct: 191 CEDGALSQLYYYFNVKGSAIGGTYVASERLEDSNCK 226
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATT 112
P E+D R + + V+ Q CGSCWA + T
Sbjct: 2 PPEWDWRSK----GAVTKVKDQGMCGSCWAFSVT 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,210,963
Number of Sequences: 62578
Number of extensions: 226268
Number of successful extensions: 439
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 110
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)