Query psy10824
Match_columns 185
No_of_seqs 205 out of 1187
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:25:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542|consensus 100.0 4.5E-39 9.7E-44 271.4 9.5 153 17-185 71-253 (372)
2 PTZ00203 cathepsin L protease; 100.0 1.4E-35 3E-40 256.2 11.3 154 13-183 34-221 (348)
3 PTZ00200 cysteine proteinase; 100.0 1.2E-33 2.5E-38 250.7 11.0 151 17-185 126-329 (448)
4 KOG1543|consensus 100.0 2.7E-33 5.9E-38 240.1 10.5 142 31-185 40-207 (325)
5 PTZ00021 falcipain-2; Provisio 100.0 3E-33 6.5E-38 249.5 10.0 150 20-185 172-362 (489)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 2E-30 4.3E-35 213.9 9.5 101 78-185 1-106 (243)
7 cd02620 Peptidase_C1A_Cathepsi 100.0 2.3E-30 4.9E-35 213.0 8.8 100 79-184 1-100 (236)
8 PTZ00049 cathepsin C-like prot 100.0 1.1E-29 2.5E-34 232.1 9.8 104 75-185 378-489 (693)
9 cd02698 Peptidase_C1A_Cathepsi 100.0 7.3E-29 1.6E-33 204.4 9.2 99 78-185 1-103 (239)
10 PTZ00364 dipeptidyl-peptidase 100.0 1.2E-28 2.5E-33 222.5 9.5 103 75-183 202-311 (548)
11 smart00645 Pept_C1 Papain fami 99.9 1.2E-27 2.7E-32 188.5 8.0 91 78-180 1-92 (174)
12 cd02248 Peptidase_C1A Peptidas 99.9 7.2E-27 1.6E-31 187.3 9.0 95 79-185 1-95 (210)
13 PF00112 Peptidase_C1: Papain 99.9 6.7E-26 1.4E-30 181.6 7.9 98 78-185 1-100 (219)
14 KOG1544|consensus 99.9 1.7E-24 3.6E-29 182.1 -0.3 134 41-182 172-305 (470)
15 cd02619 Peptidase_C1 C1 Peptid 99.9 9.2E-23 2E-27 163.6 8.7 96 81-185 1-99 (223)
16 PTZ00462 Serine-repeat antigen 99.8 3.2E-20 7E-25 174.9 9.2 88 86-180 536-625 (1004)
17 COG4870 Cysteine protease [Pos 99.0 1.5E-10 3.1E-15 99.6 0.8 45 75-123 96-140 (372)
18 cd00585 Peptidase_C1B Peptidas 97.6 6.8E-05 1.5E-09 67.1 4.7 77 95-172 55-156 (437)
19 PF03051 Peptidase_C1_2: Pepti 97.3 0.00018 3.9E-09 64.4 3.7 77 95-172 56-157 (438)
20 PF08246 Inhibitor_I29: Cathep 94.8 0.011 2.4E-07 37.9 0.7 48 24-74 8-55 (58)
21 smart00848 Inhibitor_I29 Cathe 90.6 0.17 3.6E-06 31.8 1.6 47 25-74 9-55 (57)
22 COG3579 PepC Aminopeptidase C 82.8 2.3 5E-05 37.3 4.7 76 96-172 59-159 (444)
23 PF01754 zf-A20: A20-like zinc 68.3 3.2 7E-05 22.2 1.1 19 89-107 6-24 (25)
24 KOG4128|consensus 64.3 4.7 0.0001 35.4 2.0 78 94-172 62-166 (457)
25 smart00259 ZnF_A20 A20-like zi 53.9 6.9 0.00015 21.1 0.8 19 89-107 7-25 (26)
26 KOG2735|consensus 26.8 38 0.00083 30.4 1.6 22 105-126 374-395 (466)
No 1
>KOG1542|consensus
Probab=100.00 E-value=4.5e-39 Score=271.44 Aligned_cols=153 Identities=26% Similarity=0.438 Sum_probs=130.5
Q ss_pred HhhhhcCCCCCCCCChhhhhhchhHHHhHhhcccCCCCCCCCCCCccCCCCcccCCCC----------------------
Q psy10824 17 LRHVTRDSNPGLWADPDILKSSPSFLSSLKFGLSLTPQSQEPNPDLQLGSEHFGDYQS---------------------- 74 (185)
Q Consensus 17 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---------------------- 74 (185)
|.....+..+.|=-.+|...|.++|..++....++.. ...-+...|.++|+|++.
T Consensus 71 F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~---~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~~~~~ 147 (372)
T KOG1542|consen 71 FKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQE---NDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKLPGDAA 147 (372)
T ss_pred HHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhh---cCccccccCccchhhcCHHHHHHHhhccccccccCccccc
Confidence 4445555666666778888999999999988876433 233367788899988774
Q ss_pred ------CCCCCCceeccccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHhhcCCCCCCCC
Q psy10824 75 ------NTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDV 148 (185)
Q Consensus 75 ------~~~lP~s~DwR~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvdC~~~~~~~~g 148 (185)
...||++||||++ |+||||||||.||||||||+++++|+.++|++++. +.|||||||||+.. ++|
T Consensus 148 ~~~~~~~~~lP~~fDWR~k----gaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~L--vsLSEQeLvDCD~~---d~g 218 (372)
T KOG1542|consen 148 EAPIEPGESLPESFDWRDK----GAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKL--VSLSEQELVDCDSC---DNG 218 (372)
T ss_pred cCcCCCCCCCCcccchhcc----CCccccccCCcCcchhhhhhhhhhhhHHHhhcCcc--cccchhhhhcccCc---CCc
Confidence 3679999999999 99999999999999999999999999999999654 89999999999864 899
Q ss_pred CCCCChHHHHHHHHHc-CCCCCCCCCCCCCCCCCCC-CC
Q psy10824 149 CEGGNPMRAWYYMLEN-GVPTGGDYGSCQRFDRGNC-NC 185 (185)
Q Consensus 149 C~GG~~~~a~~yi~~~-Gi~~e~~Y~~C~PY~~~~~-~C 185 (185)
|+||.+..||+|+++. ||+.|++| ||++... +|
T Consensus 219 C~GGl~~nA~~~~~~~gGL~~E~dY----PY~g~~~~~C 253 (372)
T KOG1542|consen 219 CNGGLMDNAFKYIKKAGGLEKEKDY----PYTGKKGNQC 253 (372)
T ss_pred CCCCChhHHHHHHHHhCCccccccC----CccccCCCcc
Confidence 9999999999996665 99999999 9999988 76
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=1.4e-35 Score=256.21 Aligned_cols=154 Identities=23% Similarity=0.427 Sum_probs=127.1
Q ss_pred hhhhHhhhhcCCCCCCCCChhhhhhchhHHHhHhhcccCCCCCCCCCCCccCCCCcccCCCC------------------
Q psy10824 13 HHLLLRHVTRDSNPGLWADPDILKSSPSFLSSLKFGLSLTPQSQEPNPDLQLGSEHFGDYQS------------------ 74 (185)
Q Consensus 13 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~------------------ 74 (185)
-...|.....+.++.|=...|+..|+.+|.++++.+..++.. +.++++|.|+|+|++.
T Consensus 34 ~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~----~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~ 109 (348)
T PTZ00203 34 AAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQAR----NPHARFGITKFFDLSEAEFAARYLNGAAYFAAAK 109 (348)
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhcc----CCCeEEeccccccCCHHHHHHHhcCCCccccccc
Confidence 333455555556666666667889999999999999887642 4578888888877653
Q ss_pred ----C---------CCCCCceeccccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHhhcC
Q psy10824 75 ----N---------TELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCA 141 (185)
Q Consensus 75 ----~---------~~lP~s~DwR~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvdC~~ 141 (185)
. .+||++||||++ |+|+||||||.||||||||++++||++++|++++. +.||+||||||+.
T Consensus 110 ~~~~~~~~~~~~~~~~lP~~~DWR~~----g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~--~~LSeQqLvdC~~ 183 (348)
T PTZ00203 110 QHAGQHYRKARADLSAVPDAVDWREK----GAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKL--VRLSEQQLVSCDH 183 (348)
T ss_pred ccccccccccccccccCCCCCcCCcC----CCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCC--ccCCHHHHHhccC
Confidence 0 147999999999 99999999999999999999999999999998654 7899999999986
Q ss_pred CCCCCCCCCCCChHHHHHHHHHc---CCCCCCCCCCCCCCCCCCC
Q psy10824 142 ACTGGDVCEGGNPMRAWYYMLEN---GVPTGGDYGSCQRFDRGNC 183 (185)
Q Consensus 142 ~~~~~~gC~GG~~~~a~~yi~~~---Gi~~e~~Y~~C~PY~~~~~ 183 (185)
. +.||+||++..||+|++++ ||++|++| ||++..+
T Consensus 184 ~---~~GC~GG~~~~a~~yi~~~~~ggi~~e~~Y----PY~~~~~ 221 (348)
T PTZ00203 184 V---DNGCGGGLMLQAFEWVLRNMNGTVFTEKSY----PYVSGNG 221 (348)
T ss_pred C---CCCCCCCCHHHHHHHHHHhcCCCCCccccC----CCccCCC
Confidence 3 7899999999999999865 58898888 9988765
No 3
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1.2e-33 Score=250.70 Aligned_cols=151 Identities=21% Similarity=0.354 Sum_probs=127.3
Q ss_pred HhhhhcCCCCCCCCChhhhhhchhHHHhHhhcccCCCCCCCCCCCccCCCCcccCCCC------------C---------
Q psy10824 17 LRHVTRDSNPGLWADPDILKSSPSFLSSLKFGLSLTPQSQEPNPDLQLGSEHFGDYQS------------N--------- 75 (185)
Q Consensus 17 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~------------~--------- 75 (185)
|.....+.++.|-...|+..|..+|.++++.+..++. +.++.+|.|+|+|++. .
T Consensus 126 F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~-----~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~~~~ 200 (448)
T PTZ00200 126 FEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG-----DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNSTSHN 200 (448)
T ss_pred HHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC-----cCCeEEeccccccCCHHHHHHHhccCCCcccccccccc
Confidence 4444455566776777888999999999999988763 3468888888887662 0
Q ss_pred ------------------------C-------CCCCceeccccCCCCCCcccccccc-cccchhhhhhhhhHHHHHHHHh
Q psy10824 76 ------------------------T-------ELPEEFDLRKQYPNCTNIGHVQLQS-NCGSCWAIATTAALSDRMCIAT 123 (185)
Q Consensus 76 ------------------------~-------~lP~s~DwR~~~~~cg~v~~v~dQg-~CgsCwAfa~~~~le~~~~i~~ 123 (185)
. .+|++||||+. |.|+|||||| .||||||||++++||++++|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~----g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~ 276 (448)
T PTZ00200 201 NDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRA----DAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYR 276 (448)
T ss_pred cccccccccccccccccccccccccccccccccCCCCccCCCC----CCCCCcccCCCccchHHHHhHHHHHHHHHHHhc
Confidence 0 14899999998 8999999999 9999999999999999999987
Q ss_pred cCCccccCCHHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy10824 124 QGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGSCQRFDRGNCNC 185 (185)
Q Consensus 124 ~~~~~~~LS~Q~lvdC~~~~~~~~gC~GG~~~~a~~yi~~~Gi~~e~~Y~~C~PY~~~~~~C 185 (185)
+.. +.||+||||||+.. +.||+||++..||+|++++||++|++| ||++....|
T Consensus 277 ~~~--~~LSeQqLvDC~~~---~~GC~GG~~~~A~~yi~~~Gi~~e~~Y----PY~~~~~~C 329 (448)
T PTZ00200 277 DKS--VDLSEQELVNCDTK---SQGCSGGYPDTALEYVKNKGLSSSSDV----PYLAKDGKC 329 (448)
T ss_pred CCC--eecCHHHHhhccCc---cCCCCCCcHHHHHHHHhhcCccccccC----CCCCCCCCC
Confidence 544 78999999999863 789999999999999999999998888 999988877
No 4
>KOG1543|consensus
Probab=100.00 E-value=2.7e-33 Score=240.12 Aligned_cols=142 Identities=34% Similarity=0.610 Sum_probs=120.3
Q ss_pred ChhhhhhchhHHHhHhhcccCCCCCCCCCCCccCCCCcccCCCC-------------------------CCCCCCceecc
Q psy10824 31 DPDILKSSPSFLSSLKFGLSLTPQSQEPNPDLQLGSEHFGDYQS-------------------------NTELPEEFDLR 85 (185)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-------------------------~~~lP~s~DwR 85 (185)
..+...|...|..++..+..++.. ....+.++.|.|+|++. ..++|++||||
T Consensus 40 ~~~~~~r~~~f~~n~~~~~~~n~~---~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~DwR 116 (325)
T KOG1543|consen 40 RVEKKARRAIFKENLQKIESHNLK---YVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIKRDKFTEKLDGDDLPDSFDWR 116 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh---hceeeeeccccccccchHHHHHhhccccCccccccccccccchhhCCCCcccc
Confidence 345556667888888866665543 27889999999988752 24799999999
Q ss_pred ccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcC
Q psy10824 86 KQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENG 165 (185)
Q Consensus 86 ~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvdC~~~~~~~~gC~GG~~~~a~~yi~~~G 165 (185)
++| ..+.|||||+.||||||||++++||++++|++++.+ +.||+||||||+..+ +.||+||++..||+|++++|
T Consensus 117 ~~~---~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l-~sLSeq~lvdC~~~~--~~GC~GG~~~~A~~yi~~~G 190 (325)
T KOG1543|consen 117 DKG---AVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKL-LSLSEQDLVDCCGEC--GDGCNGGEPKNAFKYIKKNG 190 (325)
T ss_pred ccC---CcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCcc-CccChhhhhhccCCC--CCCcCCCCHHHHHHHHHHhC
Confidence 995 356669999999999999999999999999998533 899999999998763 78999999999999999998
Q ss_pred CCC-CCCCCCCCCCCCCCCCC
Q psy10824 166 VPT-GGDYGSCQRFDRGNCNC 185 (185)
Q Consensus 166 i~~-e~~Y~~C~PY~~~~~~C 185 (185)
+++ +.+| ||.++.++|
T Consensus 191 ~~t~~~~Y----py~~~~~~C 207 (325)
T KOG1543|consen 191 GVTECENY----PYIGKDGTC 207 (325)
T ss_pred CCCCCcCC----CCcCCCCCc
Confidence 888 9999 999998887
No 5
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=3e-33 Score=249.52 Aligned_cols=150 Identities=23% Similarity=0.373 Sum_probs=124.8
Q ss_pred hhcCCCCCCCCChhhhhhchhHHHhHhhcccCCCCCCCCCCCccCCCCcccCCCC----------C--------------
Q psy10824 20 VTRDSNPGLWADPDILKSSPSFLSSLKFGLSLTPQSQEPNPDLQLGSEHFGDYQS----------N-------------- 75 (185)
Q Consensus 20 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~----------~-------------- 75 (185)
...+.++.|=...|+..|..+|.++++.+..++.. .+.+++++.|+|+|++. .
T Consensus 172 wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~---~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~~~~~~~ 248 (489)
T PTZ00021 172 FIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNK---ENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNGKKSPRV 248 (489)
T ss_pred HHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhcc---CCCCEEEeccccccCCHHHHHHHhcccccccccccccccccc
Confidence 33334555555667789999999999999987742 45789999999988752 0
Q ss_pred ---C------------CCCCceeccccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHhhc
Q psy10824 76 ---T------------ELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCC 140 (185)
Q Consensus 76 ---~------------~lP~s~DwR~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvdC~ 140 (185)
. ..|++||||+. |.|+||||||.||||||||++++||++++|++++. +.||+||||||+
T Consensus 249 ~~~~~~~~~~~~~~~~~~P~s~DWR~~----g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~--v~LSeQqLVDCs 322 (489)
T PTZ00021 249 INYDDVIKKYKPKDATFDHAKYDWRLH----NGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNEL--VSLSEQELVDCS 322 (489)
T ss_pred ccccccccccccccccCCccccccccC----CCCCCcccccccccHHHHHHHHHHHHHHHHHcCCC--cccCHHHHhhhc
Confidence 0 12789999999 89999999999999999999999999999998654 799999999998
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHc-CCCCCCCCCCCCCCCCC-CCCC
Q psy10824 141 AACTGGDVCEGGNPMRAWYYMLEN-GVPTGGDYGSCQRFDRG-NCNC 185 (185)
Q Consensus 141 ~~~~~~~gC~GG~~~~a~~yi~~~-Gi~~e~~Y~~C~PY~~~-~~~C 185 (185)
.. +.||+||++..||+|+.++ ||++|++| ||++. +..|
T Consensus 323 ~~---n~GC~GG~~~~Af~yi~~~gGl~tE~~Y----PY~~~~~~~C 362 (489)
T PTZ00021 323 FK---NNGCYGGLIPNAFEDMIELGGLCSEDDY----PYVSDTPELC 362 (489)
T ss_pred cC---CCCCCCcchHhhhhhhhhccccCccccc----CccCCCCCcc
Confidence 64 7899999999999999877 89998888 99986 3555
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=99.97 E-value=2e-30 Score=213.89 Aligned_cols=101 Identities=29% Similarity=0.544 Sum_probs=89.7
Q ss_pred CCCceeccccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHhcC----CccccCCHHHHHhhcCCCCCCCCCCCCC
Q psy10824 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQG----RLDHTLSSDHLLTCCAACTGGDVCEGGN 153 (185)
Q Consensus 78 lP~s~DwR~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~----~~~~~LS~Q~lvdC~~~~~~~~gC~GG~ 153 (185)
||++||||+.+++|..|+|||||+.||||||||++++||++++|++++ ...+.||+|+|+||+.. +.||+||+
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~---~~GC~GG~ 77 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY---SQGCDGGF 77 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC---CCCCCCCC
Confidence 799999999987777999999999999999999999999999998865 12378999999999853 78999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCCCCCCCC-CCCCC
Q psy10824 154 PMRAWYYMLENGVPTGGDYGSCQRFDR-GNCNC 185 (185)
Q Consensus 154 ~~~a~~yi~~~Gi~~e~~Y~~C~PY~~-~~~~C 185 (185)
+..|++|++++||++|++| ||++ ....|
T Consensus 78 ~~~a~~~~~~~Gi~~e~~y----PY~~~~~~~C 106 (243)
T cd02621 78 PFLVGKFAEDFGIVTEDYF----PYTADDDRPC 106 (243)
T ss_pred HHHHHHHHHhcCcCCCcee----CCCCCCCCCC
Confidence 9999999999999997777 9987 55555
No 7
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=99.96 E-value=2.3e-30 Score=212.97 Aligned_cols=100 Identities=46% Similarity=0.996 Sum_probs=88.4
Q ss_pred CCceeccccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHhhcCCCCCCCCCCCCChHHHH
Q psy10824 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMRAW 158 (185)
Q Consensus 79 P~s~DwR~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvdC~~~~~~~~gC~GG~~~~a~ 158 (185)
|++||||++|++|..|+||+|||.||||||||++++||++++|++++...+.||+||||||+.. ++.||+||++..|+
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~--~~~gC~GG~~~~a~ 78 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG--CGDGCNGGYPDAAW 78 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC--CCCCCCCCCHHHHH
Confidence 8999999998877667899999999999999999999999999886333378999999999864 36899999999999
Q ss_pred HHHHHcCCCCCCCCCCCCCCCCCCCC
Q psy10824 159 YYMLENGVPTGGDYGSCQRFDRGNCN 184 (185)
Q Consensus 159 ~yi~~~Gi~~e~~Y~~C~PY~~~~~~ 184 (185)
+||+++|+++|++| ||++..+.
T Consensus 79 ~~i~~~G~~~e~~y----PY~~~~~~ 100 (236)
T cd02620 79 KYLTTTGVVTGGCQ----PYTIPPCG 100 (236)
T ss_pred HHHHhcCCCcCCEe----cCcCCCCc
Confidence 99999999997777 99877653
No 8
>PTZ00049 cathepsin C-like protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=232.14 Aligned_cols=104 Identities=27% Similarity=0.439 Sum_probs=92.5
Q ss_pred CCCCCCceeccccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHhcCC--------ccccCCHHHHHhhcCCCCCC
Q psy10824 75 NTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGR--------LDHTLSSDHLLTCCAACTGG 146 (185)
Q Consensus 75 ~~~lP~s~DwR~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~--------~~~~LS~Q~lvdC~~~~~~~ 146 (185)
..+||++||||+.|++|+.|+||+|||.||||||||++++||+|++|++++. +...||+|+||||+.. +
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~---n 454 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY---D 454 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC---C
Confidence 3589999999999999999999999999999999999999999999997532 1237999999999863 7
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy10824 147 DVCEGGNPMRAWYYMLENGVPTGGDYGSCQRFDRGNCNC 185 (185)
Q Consensus 147 ~gC~GG~~~~a~~yi~~~Gi~~e~~Y~~C~PY~~~~~~C 185 (185)
+||+||++..|++|++++||++|+.| ||++....|
T Consensus 455 qGC~GG~~~~A~kya~~~GI~tEscY----PY~a~~g~C 489 (693)
T PTZ00049 455 QGCNGGFPYLVSKMAKLQGIPLDKVF----PYTATEQTC 489 (693)
T ss_pred CCcCCCcHHHHHHHHHHCCCCcCCcc----CCcCCCCCC
Confidence 89999999999999999999997766 998877666
No 9
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=99.95 E-value=7.3e-29 Score=204.35 Aligned_cols=99 Identities=31% Similarity=0.649 Sum_probs=86.2
Q ss_pred CCCceeccccCCCCCCcccccccc---cccchhhhhhhhhHHHHHHHHhcCCc-cccCCHHHHHhhcCCCCCCCCCCCCC
Q psy10824 78 LPEEFDLRKQYPNCTNIGHVQLQS---NCGSCWAIATTAALSDRMCIATQGRL-DHTLSSDHLLTCCAACTGGDVCEGGN 153 (185)
Q Consensus 78 lP~s~DwR~~~~~cg~v~~v~dQg---~CgsCwAfa~~~~le~~~~i~~~~~~-~~~LS~Q~lvdC~~~~~~~~gC~GG~ 153 (185)
||++||||++++. .+|+|||||| .||||||||++++||++++|++++.. .+.||+|+||||+. +.||+||+
T Consensus 1 lP~~~Dwr~~~~~-~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~----~~gC~GG~ 75 (239)
T cd02698 1 LPKSWDWRNVNGV-NYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG----GGSCHGGD 75 (239)
T ss_pred CCCCcccccCCCC-cccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC----CCCccCcC
Confidence 7999999998433 3899999998 99999999999999999999886532 37899999999985 67999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy10824 154 PMRAWYYMLENGVPTGGDYGSCQRFDRGNCNC 185 (185)
Q Consensus 154 ~~~a~~yi~~~Gi~~e~~Y~~C~PY~~~~~~C 185 (185)
+..|++|++++|+++|++| ||++....|
T Consensus 76 ~~~a~~~~~~~Gl~~e~~y----PY~~~~~~C 103 (239)
T cd02698 76 PGGVYEYAHKHGIPDETCN----PYQAKDGEC 103 (239)
T ss_pred HHHHHHHHHHcCcCCCCee----CCcCCCCCC
Confidence 9999999999999997777 998765444
No 10
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=99.95 E-value=1.2e-28 Score=222.51 Aligned_cols=103 Identities=23% Similarity=0.369 Sum_probs=89.8
Q ss_pred CCCCCCceeccccCCCCCCccccccccc---ccchhhhhhhhhHHHHHHHHhcCC----ccccCCHHHHHhhcCCCCCCC
Q psy10824 75 NTELPEEFDLRKQYPNCTNIGHVQLQSN---CGSCWAIATTAALSDRMCIATQGR----LDHTLSSDHLLTCCAACTGGD 147 (185)
Q Consensus 75 ~~~lP~s~DwR~~~~~cg~v~~v~dQg~---CgsCwAfa~~~~le~~~~i~~~~~----~~~~LS~Q~lvdC~~~~~~~~ 147 (185)
..+||++||||++++ +.+|+||||||. ||||||||++++||+|++|++++. ..+.||+|+||||+.. ++
T Consensus 202 ~~~LP~sfDWR~~gg-~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~---n~ 277 (548)
T PTZ00364 202 GDPPPAAWSWGDVGG-ASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQY---GQ 277 (548)
T ss_pred ccCCCCccccCcCCC-CccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCC---CC
Confidence 468999999999843 247999999999 999999999999999999998542 1378999999999853 78
Q ss_pred CCCCCChHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q psy10824 148 VCEGGNPMRAWYYMLENGVPTGGDYGSCQRFDRGNC 183 (185)
Q Consensus 148 gC~GG~~~~a~~yi~~~Gi~~e~~Y~~C~PY~~~~~ 183 (185)
||+||++..|++|++++||++|++| |.||++..+
T Consensus 278 GCdGG~p~~A~~yi~~~GI~tE~dY--~~PY~~~dg 311 (548)
T PTZ00364 278 GCAGGFPEEVGKFAETFGILTTDSY--YIPYDSGDG 311 (548)
T ss_pred CCCCCcHHHHHHHHHhCCccccccc--CCCCCCCCC
Confidence 9999999999999999999998877 779987655
No 11
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=99.94 E-value=1.2e-27 Score=188.48 Aligned_cols=91 Identities=41% Similarity=0.779 Sum_probs=82.5
Q ss_pred CCCceeccccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHhhcCCCCCCCCCCCCChHHH
Q psy10824 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMRA 157 (185)
Q Consensus 78 lP~s~DwR~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvdC~~~~~~~~gC~GG~~~~a 157 (185)
||++||||+. ++++|||||+.||+|||||++++||++++|++++. +.||+|+|+||... +++||+||++..|
T Consensus 1 lP~~~D~R~~----~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~--~~lS~q~l~~C~~~--~~~gC~GG~~~~a 72 (174)
T smart00645 1 LPESFDWRKK----GAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKL--VSLSEQQLVDCSTG--GNNGCNGGLPDNA 72 (174)
T ss_pred CCCcCccccc----CCCCccccCcccchHHHHHHHHHHHHHHHHhcCCc--cccCHHHHhhhcCC--CCCCCCCcCHHHH
Confidence 7999999998 67999999999999999999999999999998653 78999999999864 2569999999999
Q ss_pred HHHHHHc-CCCCCCCCCCCCCCCC
Q psy10824 158 WYYMLEN-GVPTGGDYGSCQRFDR 180 (185)
Q Consensus 158 ~~yi~~~-Gi~~e~~Y~~C~PY~~ 180 (185)
++|++++ |+++|++| ||++
T Consensus 73 ~~~~~~~~Gi~~e~~~----PY~~ 92 (174)
T smart00645 73 FEYIKKNGGLETESCY----PYTG 92 (174)
T ss_pred HHHHHHcCCccccccc----Cccc
Confidence 9999998 99997766 9964
No 12
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=99.94 E-value=7.2e-27 Score=187.33 Aligned_cols=95 Identities=35% Similarity=0.719 Sum_probs=85.8
Q ss_pred CCceeccccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHhhcCCCCCCCCCCCCChHHHH
Q psy10824 79 PEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMRAW 158 (185)
Q Consensus 79 P~s~DwR~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvdC~~~~~~~~gC~GG~~~~a~ 158 (185)
|++||||+. +.++||+|||.||+|||||++++||++++|+++.. +.||+|+|++|... ++.||+||++..|+
T Consensus 1 P~~~d~r~~----~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~--~~lS~q~l~~c~~~--~~~gC~GG~~~~a~ 72 (210)
T cd02248 1 PESVDWREK----GAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKL--VSLSEQQLVDCSTS--GNNGCNGGNPDNAF 72 (210)
T ss_pred CCcccCCcC----CCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCC--cccCHHHHhccCCC--CCCCCCCCCHHHhH
Confidence 889999999 77999999999999999999999999999998643 78999999999864 26899999999999
Q ss_pred HHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy10824 159 YYMLENGVPTGGDYGSCQRFDRGNCNC 185 (185)
Q Consensus 159 ~yi~~~Gi~~e~~Y~~C~PY~~~~~~C 185 (185)
+|++++|+++|++| ||.+...+|
T Consensus 73 ~~~~~~Gi~~e~~y----PY~~~~~~C 95 (210)
T cd02248 73 EYVKNGGLASESDY----PYTGKDGTC 95 (210)
T ss_pred HHHHHCCcCccccC----CccCCCCCc
Confidence 99999999998877 998876665
No 13
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=99.93 E-value=6.7e-26 Score=181.63 Aligned_cols=98 Identities=37% Similarity=0.720 Sum_probs=80.0
Q ss_pred CCCceeccccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHhhcCCCCCCCCCCCCChHHH
Q psy10824 78 LPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMRA 157 (185)
Q Consensus 78 lP~s~DwR~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvdC~~~~~~~~gC~GG~~~~a 157 (185)
||++||||+.+ +.++||+||+.||+|||||++++||++++++.+ ...+.||+|+|++|.... +.+|+||++..|
T Consensus 1 lP~~~D~r~~~---~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~-~~~~~lS~q~l~~~~~~~--~~~c~gg~~~~a 74 (219)
T PF00112_consen 1 LPKSFDWRDKG---GRITPVRDQGSCGSCWAFAAAAALESRLAIQNN-GKNVDLSEQYLIDCSNKY--NKGCDGGSPFDA 74 (219)
T ss_dssp STSSEEGGGTT---TCSG---BTTSSBTHHHHHHHHHHHHHHHHHHT-SSCEEB-HHHHHHHSTGT--SSTTBBBEHHHH
T ss_pred CCCCEecccCC---CCcCccccCCcccccccchhccceecccccccc-cccccccccccccccccc--ccccccCccccc
Confidence 79999999962 369999999999999999999999999999984 223899999999998732 679999999999
Q ss_pred HHHHHH-cCCCCCCCCCCCCCCCCCC-CCC
Q psy10824 158 WYYMLE-NGVPTGGDYGSCQRFDRGN-CNC 185 (185)
Q Consensus 158 ~~yi~~-~Gi~~e~~Y~~C~PY~~~~-~~C 185 (185)
++|+++ +|+++|+.| ||.+.. .+|
T Consensus 75 ~~~~~~~~Gi~~e~~~----pY~~~~~~~c 100 (219)
T PF00112_consen 75 LKYIKNNNGIVTEEDY----PYNGNENPTC 100 (219)
T ss_dssp HHHHHHHTSBEBTTTS------SSSSSCSS
T ss_pred ceeecccCcccccccc----cccccccccc
Confidence 999999 899998888 999765 344
No 14
>KOG1544|consensus
Probab=99.88 E-value=1.7e-24 Score=182.13 Aligned_cols=134 Identities=29% Similarity=0.541 Sum_probs=120.9
Q ss_pred HHHhHhhcccCCCCCCCCCCCccCCCCcccCCCCCCCCCCceeccccCCCCCCcccccccccccchhhhhhhhhHHHHHH
Q psy10824 41 FLSSLKFGLSLTPQSQEPNPDLQLGSEHFGDYQSNTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMC 120 (185)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~lP~s~DwR~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~ 120 (185)
+-.+|..|.++..+|.++......+++.+..+....+||+.||.|.+|| +.+.++.|||+|++.||||++++..+|++
T Consensus 172 WGmtL~DGiKyRLGTL~Ps~sv~nMNEi~~~l~p~~~LPE~F~As~KWp--~liH~plDQgnCa~SWafSTaavasDRiA 249 (470)
T KOG1544|consen 172 WGMTLDDGIKYRLGTLRPSSSVMNMNEIYTVLNPGEVLPEAFEASEKWP--NLIHEPLDQGNCAGSWAFSTAAVASDRVA 249 (470)
T ss_pred hcccccccceeeecccCchhhhhhHHhHhhccCcccccchhhhhhhcCC--ccccCccccCCcccceeeeeehhccceeE
Confidence 3467899999999999998888877777778888899999999999999 78999999999999999999999999999
Q ss_pred HHhcCCccccCCHHHHHhhcCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCCCCCCCCCCCC
Q psy10824 121 IATQGRLDHTLSSDHLLTCCAACTGGDVCEGGNPMRAWYYMLENGVPTGGDYGSCQRFDRGN 182 (185)
Q Consensus 121 i~~~~~~~~~LS~Q~lvdC~~~~~~~~gC~GG~~~~a~~yi~~~Gi~~e~~Y~~C~PY~~~~ 182 (185)
|++.|++...||+|+|++|.... ..||.||+...||-||.+.|++. ..|+||.+.+
T Consensus 250 I~S~GR~t~~LSpQnLlSC~~h~--q~GC~gG~lDRAWWYlRKrGvVs----dhCYP~~~dQ 305 (470)
T KOG1544|consen 250 IHSLGRMTPVLSPQNLLSCDTHQ--QQGCRGGRLDRAWWYLRKRGVVS----DHCYPFSGDQ 305 (470)
T ss_pred EeeccccccccChHHhcchhhhh--hccCccCcccchheeeecccccc----cccccccCCC
Confidence 99999988899999999998754 89999999999999999999999 4555997543
No 15
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=99.88 E-value=9.2e-23 Score=163.61 Aligned_cols=96 Identities=28% Similarity=0.448 Sum_probs=81.4
Q ss_pred ceeccccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHhhcCCCCC--CCCCCCCChHHHH
Q psy10824 81 EFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTG--GDVCEGGNPMRAW 158 (185)
Q Consensus 81 s~DwR~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvdC~~~~~~--~~gC~GG~~~~a~ 158 (185)
++|||+. + ++||+|||.||+|||||++++||++++++.++...+.||+|+|++|...... ..||.||.+..++
T Consensus 1 ~~d~r~~----~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~ 75 (223)
T cd02619 1 SVDLRPL----R-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSAL 75 (223)
T ss_pred CCcchhc----C-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHH
Confidence 4899998 7 8999999999999999999999999999875212389999999999864200 2699999999999
Q ss_pred H-HHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy10824 159 Y-YMLENGVPTGGDYGSCQRFDRGNCNC 185 (185)
Q Consensus 159 ~-yi~~~Gi~~e~~Y~~C~PY~~~~~~C 185 (185)
. +++++||++|..| ||......|
T Consensus 76 ~~~~~~~Gi~~e~~~----Py~~~~~~~ 99 (223)
T cd02619 76 LKLVALKGIPPEEDY----PYGAESDGE 99 (223)
T ss_pred HHHHHHcCCCccccC----CCCCCCCCC
Confidence 8 8888999998888 998776554
No 16
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=99.82 E-value=3.2e-20 Score=174.86 Aligned_cols=88 Identities=24% Similarity=0.508 Sum_probs=74.3
Q ss_pred ccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHhhcCCCCCCCCCCCCC-hHHHHHHHHHc
Q psy10824 86 KQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCCAACTGGDVCEGGN-PMRAWYYMLEN 164 (185)
Q Consensus 86 ~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvdC~~~~~~~~gC~GG~-~~~a~~yi~~~ 164 (185)
+.++.|....||||||.||+|||||++++||++++|++++. +.||+|+||||+... ++.||.||+ +..++.|++++
T Consensus 536 kD~~sC~s~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~--v~LSeQqLVDCs~~~-gn~GC~GG~~~~efl~yI~e~ 612 (1004)
T PTZ00462 536 KDENNCISKIQIEDQGNCAISWIFASKYHLETIKCMKGYEP--HAISALYIANCSKGE-HKDRCDEGSNPLEFLQIIEDN 612 (1004)
T ss_pred ccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHHhcCCC--cccCHHHHHhccccc-CCCCCCCCCcHHHHHHHHHHc
Confidence 34588877889999999999999999999999999998654 789999999998632 468999997 55566999888
Q ss_pred C-CCCCCCCCCCCCCCC
Q psy10824 165 G-VPTGGDYGSCQRFDR 180 (185)
Q Consensus 165 G-i~~e~~Y~~C~PY~~ 180 (185)
| |++|++| ||++
T Consensus 613 GgLptESdY----PYt~ 625 (1004)
T PTZ00462 613 GFLPADSNY----LYNY 625 (1004)
T ss_pred CCCcccccC----CCcc
Confidence 5 8887777 9975
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.5e-10 Score=99.60 Aligned_cols=45 Identities=36% Similarity=0.599 Sum_probs=40.5
Q ss_pred CCCCCCceeccccCCCCCCcccccccccccchhhhhhhhhHHHHHHHHh
Q psy10824 75 NTELPEEFDLRKQYPNCTNIGHVQLQSNCGSCWAIATTAALSDRMCIAT 123 (185)
Q Consensus 75 ~~~lP~s~DwR~~~~~cg~v~~v~dQg~CgsCwAfa~~~~le~~~~i~~ 123 (185)
...+|.-||||+. |.|+||||||.||+||||+++++||+.+.-..
T Consensus 96 ~~s~~~~fd~r~~----g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~ 140 (372)
T COG4870 96 SASLPSYFDRRDE----GKVSPVKDQGSGGSCWAFATTRSLESYLNPES 140 (372)
T ss_pred cccchhheeeecc----CCcccccccCcccceEeeeehhhhhheecccc
Confidence 3568999999999 89999999999999999999999999885543
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=97.62 E-value=6.8e-05 Score=67.10 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=60.4
Q ss_pred ccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHh----------------hcC--CCC-------CCCCC
Q psy10824 95 GHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT----------------CCA--ACT-------GGDVC 149 (185)
Q Consensus 95 ~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvd----------------C~~--~~~-------~~~gC 149 (185)
.+|+||+.-|-||.||+...|+..+..+.+.. .+.||+..|.- ... ..+ .....
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~-~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~ 133 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLK-EFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQN 133 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCC-CEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcC
Confidence 48999999999999999999999987755443 48999987765 210 000 14457
Q ss_pred CCCChHHHHHHHHHcCCCCCCCC
Q psy10824 150 EGGNPMRAWYYMLENGVPTGGDY 172 (185)
Q Consensus 150 ~GG~~~~a~~yi~~~Gi~~e~~Y 172 (185)
+||.-..+..-|++.|++..+.|
T Consensus 134 DGGqw~m~~~li~KYGvVPk~~~ 156 (437)
T cd00585 134 DGGQWDMLVNLIEKYGLVPKSVM 156 (437)
T ss_pred CCCchHHHHHHHHHcCCCccccc
Confidence 89999999999999999997777
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=97.34 E-value=0.00018 Score=64.43 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=46.6
Q ss_pred ccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHH----------------hhcCCCC---------CCCCC
Q psy10824 95 GHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLL----------------TCCAACT---------GGDVC 149 (185)
Q Consensus 95 ~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lv----------------dC~~~~~---------~~~gC 149 (185)
.+|.||+.-|-||.||+..+|+..+..+.+.+ .+.||+..|. +.....- .....
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~-~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~ 134 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLK-DFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVS 134 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-S-S--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCC-ceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCC
Confidence 48999999999999999999999998776532 4899998865 3321100 02346
Q ss_pred CCCChHHHHHHHHHcCCCCCCCC
Q psy10824 150 EGGNPMRAWYYMLENGVPTGGDY 172 (185)
Q Consensus 150 ~GG~~~~a~~yi~~~Gi~~e~~Y 172 (185)
+||.-..+..-|++.||+..+.|
T Consensus 135 DGGqw~~~~nli~KYGvVPk~~m 157 (438)
T PF03051_consen 135 DGGQWDMVVNLIKKYGVVPKSVM 157 (438)
T ss_dssp S-B-HHHHHHHHHHH---BGGGS
T ss_pred CCCchHHHHHHHHHcCcCcHhhC
Confidence 89999999999999999997766
No 20
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=94.78 E-value=0.011 Score=37.86 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=37.0
Q ss_pred CCCCCCCChhhhhhchhHHHhHhhcccCCCCCCCCCCCccCCCCcccCCCC
Q psy10824 24 SNPGLWADPDILKSSPSFLSSLKFGLSLTPQSQEPNPDLQLGSEHFGDYQS 74 (185)
Q Consensus 24 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 74 (185)
.++.|=...++..|..+|.++++.+..++ ..++.++.+++|+|+|++.
T Consensus 8 ~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N---~~~~~~~~~~~N~fsD~t~ 55 (58)
T PF08246_consen 8 YGKSYKSAEEEARRFAIFKENLRRIEEHN---ANGNNTYKLGLNQFSDMTP 55 (58)
T ss_dssp CT---SSHHHHHHHHHHHHHHHHHHHHHH---HTTSSSEEE-SSTTTTSSH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHh---cCCCCCeEEeCccccCcCh
Confidence 34555567778889999999999999977 4678899999999999873
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=90.57 E-value=0.17 Score=31.77 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=35.3
Q ss_pred CCCCCCChhhhhhchhHHHhHhhcccCCCCCCCCCCCccCCCCcccCCCC
Q psy10824 25 NPGLWADPDILKSSPSFLSSLKFGLSLTPQSQEPNPDLQLGSEHFGDYQS 74 (185)
Q Consensus 25 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 74 (185)
++.|=...+...|..+|..++..+..++.. ...++.+|.|+|+|++.
T Consensus 9 ~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~---~~~~~~~~~N~fsDlt~ 55 (57)
T smart00848 9 GKSYSSEEEELRRFEIFKENLKFIEEHNKK---NDHSYTLGLNQFADLTN 55 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCCeEecCcccccCCC
Confidence 333334556667789999999998887642 45789999999999875
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=82.84 E-value=2.3 Score=37.27 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=47.9
Q ss_pred cccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHhhc----------------CCC---------CCCCCCC
Q psy10824 96 HVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLTCC----------------AAC---------TGGDVCE 150 (185)
Q Consensus 96 ~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvdC~----------------~~~---------~~~~gC~ 150 (185)
+|.||..-|-||.||+.-.+-..+.-.. +...+.||..++.--+ ... -...--+
T Consensus 59 ~vtNQk~SGRCWmFAAlNtfRhk~~~el-~le~fElSQaytfFwDKlEKaN~FleqIi~tadq~ldsRlv~~LL~~PqqD 137 (444)
T COG3579 59 KVTNQKQSGRCWMFAALNTFRHKLISEL-KLEDFELSQAYTFFWDKLEKANWFLEQIIETADQELDSRLVSFLLATPQQD 137 (444)
T ss_pred ccccccccceehHHHHHHHHHHHHHHhc-CcceeehhhHHHHHHHHHHHhhHHHHHHHhhcccchHHHHHHHHHcCcccc
Confidence 7899999999999999988754443222 2223566665443111 000 0022347
Q ss_pred CCChHHHHHHHHHcCCCCCCCC
Q psy10824 151 GGNPMRAWYYMLENGVPTGGDY 172 (185)
Q Consensus 151 GG~~~~a~~yi~~~Gi~~e~~Y 172 (185)
||--.....-+++.|++.-+.|
T Consensus 138 GGQwdM~v~l~eKYGvVpK~~y 159 (444)
T COG3579 138 GGQWDMFVSLFEKYGVVPKSVY 159 (444)
T ss_pred CchHHHHHHHHHHhCCCchhhc
Confidence 8877777778888899996555
No 23
>PF01754 zf-A20: A20-like zinc finger; InterPro: IPR002653 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in A20. A20 is an inhibitor of cell death that inhibits NF-kappaB activation via the tumour necrosis factor receptor associated factor pathway []. The zinc finger domains appear to mediate self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 2FIF_F 2FID_B 2C7N_C 2C7M_A 2L00_A 2KZY_A 2EQG_A 2EQE_A 3OJ3_J 3OJ4_C ....
Probab=68.25 E-value=3.2 Score=22.24 Aligned_cols=19 Identities=21% Similarity=0.613 Sum_probs=15.3
Q ss_pred CCCCCcccccccccccchh
Q psy10824 89 PNCTNIGHVQLQSNCGSCW 107 (185)
Q Consensus 89 ~~cg~v~~v~dQg~CgsCw 107 (185)
++||+...+..++.|.-||
T Consensus 6 ~gCgf~Gs~~~~~~Cs~C~ 24 (25)
T PF01754_consen 6 NGCGFYGSPATNGLCSKCY 24 (25)
T ss_dssp TTSSSB-BGGGTTS-HHHH
T ss_pred CCCCCcccccccCcchhhc
Confidence 5799999999999999887
No 24
>KOG4128|consensus
Probab=64.30 E-value=4.7 Score=35.35 Aligned_cols=78 Identities=22% Similarity=0.196 Sum_probs=50.2
Q ss_pred cccccccccccchhhhhhhhhHHHHHHHHhcCCccccCCHHHHHh--------------------hcCCCC-------CC
Q psy10824 94 IGHVQLQSNCGSCWAIATTAALSDRMCIATQGRLDHTLSSDHLLT--------------------CCAACT-------GG 146 (185)
Q Consensus 94 v~~v~dQg~CgsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lvd--------------------C~~~~~-------~~ 146 (185)
-+||.||..-|-||.|+.+..|---+..+-+-. .+.||..+|.- |-.-.+ .+
T Consensus 62 ~~pvtnqkssGrcWift~ln~lrl~~~~kLnl~-eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~n 140 (457)
T KOG4128|consen 62 RQPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLP-EFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKN 140 (457)
T ss_pred CcccccCcCCCceEEEechhHHHHHHHhcCCcc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhC
Confidence 358999999999999999988743333322211 26788877651 211100 02
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCCCC
Q psy10824 147 DVCEGGNPMRAWYYMLENGVPTGGDY 172 (185)
Q Consensus 147 ~gC~GG~~~~a~~yi~~~Gi~~e~~Y 172 (185)
..=+||.-..-..-+++.|+..-+-|
T Consensus 141 P~~DGGqw~MfvNlVkKYGviPKkcy 166 (457)
T KOG4128|consen 141 PVPDGGQWQMFVNLVKKYGVIPKKCY 166 (457)
T ss_pred CCCCCchHHHHHHHHHHhCCCcHHhc
Confidence 33468887877888888898885544
No 25
>smart00259 ZnF_A20 A20-like zinc fingers. A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.
Probab=53.92 E-value=6.9 Score=21.11 Aligned_cols=19 Identities=26% Similarity=0.824 Sum_probs=16.9
Q ss_pred CCCCCcccccccccccchh
Q psy10824 89 PNCTNIGHVQLQSNCGSCW 107 (185)
Q Consensus 89 ~~cg~v~~v~dQg~CgsCw 107 (185)
++||+...++.|+.|.-||
T Consensus 7 ~~CgF~G~~~t~~~CskCy 25 (26)
T smart00259 7 PGCGFFGNPATEGLCSKCF 25 (26)
T ss_pred CCCCCcCChhhcccCHhhc
Confidence 5789999999999999887
No 26
>KOG2735|consensus
Probab=26.75 E-value=38 Score=30.36 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=19.9
Q ss_pred chhhhhhhhhHHHHHHHHhcCC
Q psy10824 105 SCWAIATTAALSDRMCIATQGR 126 (185)
Q Consensus 105 sCwAfa~~~~le~~~~i~~~~~ 126 (185)
-||.|+++.++|..+||+.|+.
T Consensus 374 qcWv~~aI~~~El~IciKfg~~ 395 (466)
T KOG2735|consen 374 QCWVFLAICALELLICIKFGSH 395 (466)
T ss_pred hHHHHHHHHHHHhhhheeeCCc
Confidence 3999999999999999998764
Done!