BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10825
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91YB0|CLOCK_NANGA Circadian locomoter output cycles protein kaput OS=Nannospalax
galili GN=Clock PE=1 SV=1
Length = 865
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 99/128 (77%), Gaps = 8/128 (6%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGYLPFEVLGTSGYDYYHVDDL+++ CHE LMQ G+G SCYYRFLTKGQQWI
Sbjct: 290 DHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWI 349
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV---LRRD---NNQVPD-SEEQSNDTGPG 133
WLQT +YITYHQWNS+PEFIVCTH VVSY V RR+ +PD + ++S D+G
Sbjct: 350 WLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPDAAADKSQDSGSD 409
Query: 134 DS-NTIKM 140
+ NT+ +
Sbjct: 410 NRINTVSL 417
>sp|Q91YB2|CLOCK_SPACA Circadian locomoter output cycles protein kaput OS=Spalax carmeli
GN=Clock PE=2 SV=1
Length = 865
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 99/128 (77%), Gaps = 8/128 (6%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGYLPFEVLGTSGYDYYHVDDL+++ CHE LMQ G+G SCYYRFLTKGQQWI
Sbjct: 290 DHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWI 349
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV---LRRD---NNQVPD-SEEQSNDTGPG 133
WLQT +YITYHQWNS+PEFIVCTH VVSY V RR+ +PD + ++S D+G
Sbjct: 350 WLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPDAAADKSQDSGSD 409
Query: 134 DS-NTIKM 140
+ NT+ +
Sbjct: 410 NRINTVSL 417
>sp|Q9WVS9|CLOCK_RAT Circadian locomoter output cycles protein kaput OS=Rattus
norvegicus GN=Clock PE=2 SV=1
Length = 862
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 99/128 (77%), Gaps = 8/128 (6%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGYLPFEVLGTSGYDYYHVDDL+S+ CHE LMQ G+G SCYYRFLTKGQQWI
Sbjct: 290 DHRAPPIIGYLPFEVLGTSGYDYYHVDDLESLAKCHEHLMQYGKGKSCYYRFLTKGQQWI 349
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV---LRRD---NNQVPD-SEEQSNDTGPG 133
WLQT +YITYHQWNS+PEFIVCTH VVSY V RR+ +P+ + ++S D+G
Sbjct: 350 WLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGVEESLPETAADKSQDSGSD 409
Query: 134 DS-NTIKM 140
+ NT+ +
Sbjct: 410 NRINTVSL 417
>sp|Q8QGQ6|CLOCK_CHICK Circadian locomoter output cycles protein kaput OS=Gallus gallus
GN=CLOCK PE=1 SV=2
Length = 875
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 98/128 (76%), Gaps = 8/128 (6%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGYLPFEVLGTSGYDYYHVDDLD++ CHE LMQ G+G SCYYRFLTKGQQWI
Sbjct: 290 DHRAPPIIGYLPFEVLGTSGYDYYHVDDLDNLAKCHEHLMQYGKGKSCYYRFLTKGQQWI 349
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV---LRRD---NNQVPD-SEEQSNDTGPG 133
WLQT +YITYHQWNS+PEFIVCTH VVSY V RR+ +P+ ++S D+G
Sbjct: 350 WLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPEIKADKSQDSGSD 409
Query: 134 DS-NTIKM 140
+ NT+ +
Sbjct: 410 NHINTVSL 417
>sp|Q6YGZ4|CLOCK_TYTAL Circadian locomoter output cycles protein kaput OS=Tyto alba
GN=CLOCK PE=2 SV=1
Length = 851
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 99/128 (77%), Gaps = 8/128 (6%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGYLPFEVLGTSGYDYYHVDDLD++ CHE LMQ G+G SCYYRFLTKGQQWI
Sbjct: 290 DHRAPPIIGYLPFEVLGTSGYDYYHVDDLDNLAKCHEHLMQYGKGKSCYYRFLTKGQQWI 349
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV---LRRD---NNQVPD-SEEQSNDTGPG 133
WLQT +YITYHQWNS+PEFIVCTH VVSY V RR+ +P+ + ++S D+G
Sbjct: 350 WLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPEITGDKSQDSGSD 409
Query: 134 DS-NTIKM 140
+ NT+ +
Sbjct: 410 NHINTVSL 417
>sp|Q5RAK8|CLOCK_PONAB Circadian locomoter output cycles protein kaput OS=Pongo abelii
GN=CLOCK PE=2 SV=1
Length = 846
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/128 (64%), Positives = 99/128 (77%), Gaps = 8/128 (6%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGYLPFEVLGTSGYDYYHVDDL+++ CHE LMQ G+G SCYYRFLTKGQQWI
Sbjct: 290 DHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWI 349
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV---LRRD---NNQVPD-SEEQSNDTGPG 133
WLQT +YITYHQWNS+PEFIVCTH VVSY V RR+ +P+ + ++S D+G
Sbjct: 350 WLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELSIEESLPEIAADKSQDSGSD 409
Query: 134 DS-NTIKM 140
+ NT+ +
Sbjct: 410 NRINTVSL 417
>sp|O15516|CLOCK_HUMAN Circadian locomoter output cycles protein kaput OS=Homo sapiens
GN=CLOCK PE=1 SV=1
Length = 846
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/128 (64%), Positives = 99/128 (77%), Gaps = 8/128 (6%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGYLPFEVLGTSGYDYYHVDDL+++ CHE LMQ G+G SCYYRFLTKGQQWI
Sbjct: 290 DHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWI 349
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV---LRRD---NNQVPD-SEEQSNDTGPG 133
WLQT +YITYHQWNS+PEFIVCTH VVSY V RR+ +P+ + ++S D+G
Sbjct: 350 WLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKSQDSGSD 409
Query: 134 DS-NTIKM 140
+ NT+ +
Sbjct: 410 NRINTVSL 417
>sp|O08785|CLOCK_MOUSE Circadian locomoter output cycles protein kaput OS=Mus musculus
GN=Clock PE=1 SV=1
Length = 855
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 83/128 (64%), Positives = 99/128 (77%), Gaps = 8/128 (6%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGYLPFEVLGTSGYDYYHVDDL+++ CHE LMQ G+G SCYYRFLTKGQQWI
Sbjct: 290 DHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWI 349
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV---LRRD---NNQVPD-SEEQSNDTGPG 133
WLQT +YITYHQWNS+PEFIVCTH VVSY V RR+ +P+ + ++S D+G
Sbjct: 350 WLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKSQDSGSD 409
Query: 134 DS-NTIKM 140
+ NT+ +
Sbjct: 410 NRINTVSL 417
>sp|O61735|CLOCK_DROME Circadian locomoter output cycles protein kaput OS=Drosophila
melanogaster GN=Clk PE=2 SV=3
Length = 1027
Score = 175 bits (443), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 77/118 (65%), Positives = 91/118 (77%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGY+PFEVLGTSGYDYYH DDLDS+V CHE L Q GEG SCYYRFLTKGQQWI
Sbjct: 281 DHRAPPIIGYMPFEVLGTSGYDYYHFDDLDSIVACHEELRQTGEGKSCYYRFLTKGQQWI 340
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTI 138
WLQT +Y++YHQ+NSKP+++VCTH+VVSY VL+ + S ++ T G S I
Sbjct: 341 WLQTDYYVSYHQFNSKPDYVVCTHKVVSYAEVLKDSRKEGQKSGNSNSITNNGSSKVI 398
>sp|Q91YA8|CLOCK_SPAJD Circadian locomoter output cycles protein kaput OS=Spalax judaei
GN=Clock PE=2 SV=1
Length = 865
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/128 (64%), Positives = 98/128 (76%), Gaps = 8/128 (6%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGYLPFEVLGTSGYDYYHVDDL+++ CHE LMQ G+G SCYYRFLTKGQQWI
Sbjct: 290 DHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWI 349
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV---LRRD---NNQVPDS-EEQSNDTGPG 133
WLQT +YITYHQWNS+PEFIVCTH VVSY V RR+ +PD+ ++ D+G
Sbjct: 350 WLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPDATADKGQDSGSD 409
Query: 134 DS-NTIKM 140
+ NT+ +
Sbjct: 410 NRINTVSL 417
>sp|Q5ZQU2|NPAS2_CHICK Neuronal PAS domain-containing protein 2 OS=Gallus gallus GN=NPAS2
PE=2 SV=1
Length = 815
Score = 171 bits (434), Expect = 9e-43, Method: Composition-based stats.
Identities = 74/92 (80%), Positives = 80/92 (86%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGYLPFEVLGTSGYDYYH+DDL+ + CHE LMQ G+G SC YRFLTKGQQWI
Sbjct: 265 DHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCHEHLMQFGKGKSCCYRFLTKGQQWI 324
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV 112
WLQT +YITYHQWNSKPEFIVCTH VVSY +V
Sbjct: 325 WLQTHYYITYHQWNSKPEFIVCTHMVVSYADV 356
>sp|Q99743|NPAS2_HUMAN Neuronal PAS domain-containing protein 2 OS=Homo sapiens GN=NPAS2
PE=2 SV=3
Length = 824
Score = 169 bits (429), Expect = 4e-42, Method: Composition-based stats.
Identities = 73/92 (79%), Positives = 80/92 (86%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGYLPFEVLGTSGYDYYH+DDL+ + CH+ LMQ G+G SC YRFLTKGQQWI
Sbjct: 265 DHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWI 324
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV 112
WLQT +YITYHQWNSKPEFIVCTH VVSY +V
Sbjct: 325 WLQTHYYITYHQWNSKPEFIVCTHSVVSYADV 356
>sp|P97460|NPAS2_MOUSE Neuronal PAS domain-containing protein 2 OS=Mus musculus GN=Npas2
PE=1 SV=1
Length = 816
Score = 167 bits (423), Expect = 2e-41, Method: Composition-based stats.
Identities = 72/92 (78%), Positives = 80/92 (86%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
D APPIIGYLPFEVLGTSGY+YYH+DDL+ + CH+ LMQ G+G SC YRFLTKGQQWI
Sbjct: 265 DHRAPPIIGYLPFEVLGTSGYNYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWI 324
Query: 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV 112
WLQT +YITYHQWNSKPEFIVCTH VVSY +V
Sbjct: 325 WLQTHYYITYHQWNSKPEFIVCTHSVVSYADV 356
>sp|Q0PGG7|HIF1A_BOSMU Hypoxia-inducible factor 1-alpha OS=Bos mutus grunniens GN=HIF1A
PE=2 SV=1
Length = 823
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
++GY P E+LG S Y+YYH D D + H + KG+ T+ YR L K ++W++T+
Sbjct: 262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKKGGYVWIETQA 321
Query: 87 YITYHQWNSKPEFIVCTHRVVSYV 110
+ Y+ NS+P+ IVC + VVS +
Sbjct: 322 TVIYNTKNSQPQCIVCVNYVVSGI 345
>sp|Q9XTA5|HIF1A_BOVIN Hypoxia-inducible factor 1-alpha OS=Bos taurus GN=HIF1A PE=2 SV=1
Length = 823
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
++GY P E+LG S Y+YYH D D + H + KG+ T+ YR L K ++W++T+
Sbjct: 262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQA 321
Query: 87 YITYHQWNSKPEFIVCTHRVVSYV 110
+ Y+ NS+P+ IVC + VVS +
Sbjct: 322 TVIYNTKNSQPQCIVCVNYVVSGI 345
>sp|Q6YGZ5|BMAL1_TYTAL Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Tyto alba GN=ARNTL PE=2 SV=1
Length = 633
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 13/123 (10%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
D A I+ YLP E+LGTS Y+Y+H DD+ + CH ++Q E T+C Y+F K
Sbjct: 361 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNC-YKFKIKDGS 419
Query: 79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP---------DSEEQSND 129
+I L++R++ + W + E+IV T+ VVS NVL + P DS Q+ +
Sbjct: 420 FITLRSRWFSFMNPWTKEVEYIVSTNTVVS-TNVLDSGDAAFPQLAASPHSMDSVLQAGE 478
Query: 130 TGP 132
GP
Sbjct: 479 GGP 481
>sp|Q61221|HIF1A_MOUSE Hypoxia-inducible factor 1-alpha OS=Mus musculus GN=Hif1a PE=1 SV=3
Length = 836
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
++GY P E+LG S Y+YYH D D + H + KG+ T+ YR L K ++W++T+
Sbjct: 262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321
Query: 87 YITYHQWNSKPEFIVCTHRVVSYV 110
+ Y+ NS+P+ IVC + VVS +
Sbjct: 322 TVIYNTKNSQPQCIVCVNYVVSGI 345
>sp|Q16665|HIF1A_HUMAN Hypoxia-inducible factor 1-alpha OS=Homo sapiens GN=HIF1A PE=1 SV=1
Length = 826
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
++GY P E+LG S Y+YYH D D + H + KG+ T+ YR L K ++W++T+
Sbjct: 262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321
Query: 87 YITYHQWNSKPEFIVCTHRVVSYV 110
+ Y+ NS+P+ IVC + VVS +
Sbjct: 322 TVIYNTKNSQPQCIVCVNYVVSGI 345
>sp|Q309Z6|HIF1A_EOSBA Hypoxia-inducible factor 1-alpha OS=Eospalax baileyi GN=HIF1A PE=2
SV=1
Length = 819
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
++GY P E+LG S Y+YYH D D + H + KG+ T+ YR L K ++W++T+
Sbjct: 263 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 322
Query: 87 YITYHQWNSKPEFIVCTHRVVSYV 110
+ Y+ NS+P+ IVC + VVS +
Sbjct: 323 TVIYNTKNSQPQCIVCVNYVVSGI 346
>sp|Q9YIB9|HIF1A_CHICK Hypoxia-inducible factor 1-alpha OS=Gallus gallus GN=HIF1A PE=2
SV=2
Length = 811
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
++GY P E+LG S Y+YYH D D + H + KG+ T+ YR L K ++W++T+
Sbjct: 262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKQGGYVWVETQA 321
Query: 87 YITYHQWNSKPEFIVCTHRVVS 108
+ Y+ NS+P+ IVC + V+S
Sbjct: 322 TVIYNTKNSQPQCIVCVNYVLS 343
>sp|Q9I8T7|BMAL1_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Gallus gallus GN=ARNTL PE=1 SV=1
Length = 633
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
D A I+ YLP E+LGTS Y+Y+H DD+ + CH ++Q E T+C Y+F K
Sbjct: 361 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNC-YKFKIKDGS 419
Query: 79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP---------DSEEQSND 129
+I L++R++ + W + E+IV T+ VVS +VL + P DS Q+ +
Sbjct: 420 FITLRSRWFSFMNPWTKEVEYIVSTNTVVS-TSVLDSGDAAFPQLAASPHSMDSVLQAGE 478
Query: 130 TGPGDSN 136
GP S+
Sbjct: 479 GGPKRSH 485
>sp|O35800|HIF1A_RAT Hypoxia-inducible factor 1-alpha OS=Rattus norvegicus GN=Hif1a PE=2
SV=1
Length = 825
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
++GY P E+LG S Y+YYH D D + H + KG+ T+ YR L K ++W++T+
Sbjct: 262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321
Query: 87 YITYHQWNSKPEFIVCTHRVVS 108
+ Y+ +S+P+ IVC + VVS
Sbjct: 322 TVIYNTKDSQPQCIVCVNYVVS 343
>sp|Q9EPW1|BMAL1_RAT Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Rattus norvegicus GN=Arntl PE=2 SV=4
Length = 626
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
D A I+ YLP E+LGTS Y+Y+H DD+ + CH ++Q E T+C Y+F K
Sbjct: 354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNC-YKFKIKDGS 412
Query: 79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP---------DSEEQSND 129
+I L++R++ + W + E+IV T+ VV NVL + P DS S +
Sbjct: 413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFPQLTASPHSMDSMLPSGE 471
Query: 130 TGP 132
GP
Sbjct: 472 GGP 474
>sp|Q9WTL8|BMAL1_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mus musculus GN=Arntl PE=1 SV=2
Length = 632
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
D A I+ YLP E+LGTS Y+Y+H DD+ + CH ++Q E T+C Y+F K
Sbjct: 360 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNC-YKFKIKDGS 418
Query: 79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP---------DSEEQSND 129
+I L++R++ + W + E+IV T+ VV NVL + P DS S +
Sbjct: 419 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFPQLTAPPHSMDSMLPSGE 477
Query: 130 TGP 132
GP
Sbjct: 478 GGP 480
>sp|O88529|BMAL1_MESAU Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mesocricetus auratus GN=ARNTL PE=2 SV=1
Length = 626
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
D A I+ YLP E+LGTS Y+Y+H DD+ + CH ++Q E T+C Y+F K
Sbjct: 354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNC-YKFKIKDGS 412
Query: 79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP---------DSEEQSND 129
+I L++R++ + W + E+IV T+ VV NVL + P DS S +
Sbjct: 413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFPQLTASPHSMDSMLPSGE 471
Query: 130 TGP 132
GP
Sbjct: 472 GGP 474
>sp|Q5R4T2|BMAL1_PONAB Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Pongo abelii GN=ARNTL PE=2 SV=1
Length = 625
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
D A I+ YLP E+LGTS Y+Y+H DD+ + CH ++Q E T+C Y+F K
Sbjct: 353 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNC-YKFKIKDGS 411
Query: 79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP---------DSEEQSND 129
+I L++R++ + W + E+IV T+ VV NVL + P DS S +
Sbjct: 412 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFPQLTASPRSMDSMLPSGE 470
Query: 130 TGP 132
GP
Sbjct: 471 GGP 473
>sp|Q91YA9|BMAL1_NANGA Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Nannospalax galili GN=Arntl PE=1 SV=1
Length = 626
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
D A I+ YLP E+LGTS Y+Y+H DD+ + CH ++Q E T+C Y+F K
Sbjct: 354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNC-YKFKIKDGS 412
Query: 79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP---------DSEEQSND 129
+I L++R++ + W + E+IV T+ VV NVL + P DS S +
Sbjct: 413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFPQLTASPHSMDSMLPSGE 471
Query: 130 TGP 132
GP
Sbjct: 472 GGP 474
>sp|O00327|BMAL1_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Homo sapiens GN=ARNTL PE=1 SV=2
Length = 626
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
D A I+ YLP E+LGTS Y+Y+H DD+ + CH ++Q E T+C Y+F K
Sbjct: 354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNC-YKFKIKDGS 412
Query: 79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP---------DSEEQSND 129
+I L++R++ + W + E+IV T+ VV NVL + P DS S +
Sbjct: 413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFPQLTASPHSMDSMLPSGE 471
Query: 130 TGP 132
GP
Sbjct: 472 GGP 474
>sp|A0MLS5|BMAL1_HORSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Equus caballus GN=ARNTL PE=2 SV=1
Length = 626
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
D A I+ YLP E+LGTS Y+Y+H DD+ + CH ++Q E T+C Y+F K
Sbjct: 354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNC-YKFKIKDGS 412
Query: 79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP---------DSEEQSND 129
+I L++R++ + W + E+IV T+ VV NVL + P DS S +
Sbjct: 413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFPQLTASPHSMDSMLPSGE 471
Query: 130 TGP 132
GP
Sbjct: 472 GGP 474
>sp|Q9I8A9|HIF1A_XENLA Hypoxia-inducible factor 1-alpha OS=Xenopus laevis GN=hif1a PE=2
SV=1
Length = 805
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
++GY P E+LG S Y+YYH D D + + + KG+ T+ YR L K ++W++T+
Sbjct: 263 LVGYEPDELLGRSVYEYYHALDSDHLTKPNYNMFTKGQVTTGQYRMLAKKGGYVWVETQA 322
Query: 87 YITYHQWNSKPEFIVCTHRVVSYV 110
+ Y+ NS+P+ IVC + V+S V
Sbjct: 323 TVIYNSKNSQPQCIVCVNYVLSEV 346
>sp|Q99814|EPAS1_HUMAN Endothelial PAS domain-containing protein 1 OS=Homo sapiens
GN=EPAS1 PE=1 SV=3
Length = 870
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
+IGY P E+LG S Y++YH D +++ H+ L KG+ S YR L K ++WL+T+
Sbjct: 264 LIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQG 323
Query: 87 YITYHQWNSKPEFIVCTHRVVSYV 110
+ Y+ N +P+ I+C + V+S +
Sbjct: 324 TVIYNPRNLQPQCIMCVNYVLSEI 347
>sp|P97481|EPAS1_MOUSE Endothelial PAS domain-containing protein 1 OS=Mus musculus
GN=Epas1 PE=1 SV=2
Length = 874
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
+IGY P E+LG S Y++YH D +++ H+ L KG+ S YR L K ++WL+T+
Sbjct: 264 LIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQG 323
Query: 87 YITYHQWNSKPEFIVCTHRVVSYV 110
+ Y+ N +P+ I+C + V+S +
Sbjct: 324 TVIYNPRNLQPQCIMCVNYVLSEI 347
>sp|Q9JHS1|EPAS1_RAT Endothelial PAS domain-containing protein 1 OS=Rattus norvegicus
GN=Epas1 PE=2 SV=1
Length = 874
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
++GY P E+LG S Y++YH D +++ H+ L KG+ S YR L K ++WL+T+
Sbjct: 264 LVGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQG 323
Query: 87 YITYHQWNSKPEFIVCTHRVVSYV 110
+ Y+ N +P+ I+C + V+S +
Sbjct: 324 TVVYNPRNLQPQCIMCVNYVLSEI 347
>sp|Q98SW2|HIF1A_ONCMY Hypoxia-inducible factor 1-alpha OS=Oncorhynchus mykiss GN=hif1a
PE=2 SV=1
Length = 766
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 54/94 (57%)
Query: 15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
M T D ++GY P ++L S Y+YYH D D ++ H L KG+ ++ YR L
Sbjct: 252 MKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLMKTHHNLFAKGQVSTGQYRMLA 311
Query: 75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVS 108
K ++W++T+ + Y+ NS+P+ +VC + V+S
Sbjct: 312 KRGGFVWVETQATVIYNNKNSQPQCVVCVNYVLS 345
>sp|P05709|SIM_DROME Protein single-minded OS=Drosophila melanogaster GN=sim PE=1 SV=3
Length = 697
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
M +D + GY P +++ + Y Y H D+ ++ H+ L+ KG+ T+ YYRFLT
Sbjct: 288 MKLIFFDARVSQLTGYEPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLT 347
Query: 75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV 112
KG W+W+Q+ + ++ +S+ FIV + V+S V
Sbjct: 348 KGGGWVWVQSYATLVHNSRSSREVFIVSVNYVLSEREV 385
>sp|Q2VPD4|BMAL2_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Mus musculus GN=Arntl2 PE=2 SV=2
Length = 579
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 2 VGFKPVTFCMSDLMNST-IY-DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEAL 59
+ +P F MN +Y D A I+GYLP E+LGTS Y+Y+H DD S+ H+A+
Sbjct: 303 INVRPAEFITRFAMNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHSSLTDKHKAV 362
Query: 60 MQKGEGT-SCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVV 107
+Q E + Y+F K ++ L++ ++ + W + E+IV + +V
Sbjct: 363 LQSKEKILTDSYKFRVKDGAFVTLKSEWFSFTNPWTKELEYIVSVNTLV 411
>sp|O61734|CYCL_DROME Protein cycle OS=Drosophila melanogaster GN=cyc PE=2 SV=2
Length = 413
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG-TSCYYRFLTKGQQW 79
D A +IG+LP E+LGTS Y+Y+H +D+ +++ H+ +MQ E T+ YRF K +
Sbjct: 325 DQRATLVIGFLPQEILGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSY 384
Query: 80 IWLQTRFYITYHQWNSKPEFIVCTHRV 106
I LQ+ + + W S+ ++I+ + V
Sbjct: 385 IQLQSEWRAFKNPWTSEIDYIIAKNSV 411
>sp|Q8WYA1|BMAL2_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Homo sapiens GN=ARNTL2 PE=1 SV=2
Length = 636
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 2 VGFKPVTFCMSDLMNSTIY--DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEAL 59
+ KP F +N D A I+GYLP E+LGTS Y+Y+H DD +++ H+A+
Sbjct: 364 INVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAV 423
Query: 60 MQKGEGT-SCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVV 107
+Q E + Y+F K ++ L+++++ + W + E+IV + +V
Sbjct: 424 LQSKEKILTDSYKFRAKDGSFVTLKSQWFSFTNPWTKELEYIVSVNTLV 472
>sp|Q9Y2N7|HIF3A_HUMAN Hypoxia-inducible factor 3-alpha OS=Homo sapiens GN=HIF3A PE=1 SV=2
Length = 669
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 48/96 (50%)
Query: 15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
M T D + GY P +++G S Y+Y H D D+V L+ KG+ + YRFL
Sbjct: 249 MKFTYCDDRIAEVAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSKGQAVTGQYRFLA 308
Query: 75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
+ ++W QT+ + + E IVC H ++S V
Sbjct: 309 RSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQV 344
>sp|Q9JHS2|HIF3A_RAT Hypoxia-inducible factor 3-alpha OS=Rattus norvegicus GN=Hif3a PE=1
SV=1
Length = 662
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
M T D + GY P +++G S Y+Y H D D+V L+ KG+ + YRFL
Sbjct: 247 MKFTYCDERIAEVAGYSPDDLIGCSAYEYIHALDSDAVSRSIHTLLSKGQAVTGQYRFLA 306
Query: 75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQS 127
+ ++W QT+ + + E I+C H ++S R + N V S EQ+
Sbjct: 307 RTGGYLWTQTQATVVSGGRGPQSESIICVHFLIS-----RVEENGVVLSLEQT 354
>sp|P12348|PER_DROPS Period circadian protein OS=Drosophila pseudoobscura pseudoobscura
GN=per PE=3 SV=3
Length = 1271
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-----SCYYRFLTK 75
D A +GYLP +++G S D YH DDL + +E++M+KG+ S YRFL +
Sbjct: 367 DSAAVSALGYLPQDLMGRSIMDLYHHDDLPVIKEIYESVMKKGQTAGASFCSKPYRFLIQ 426
Query: 76 GQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEEQ 126
+I L+T + + W+ K EF+V HRV NV N P E+
Sbjct: 427 NGCYILLETEWSSFVNPWSRKLEFVVGHHRVFQGPKICNVFETPPNSEPKIAEE 480
>sp|Q0VBL6|HIF3A_MOUSE Hypoxia-inducible factor 3-alpha OS=Mus musculus GN=Hif3a PE=1 SV=2
Length = 662
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 48/96 (50%)
Query: 15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
M T D + GY P +++G S Y+Y H D D+V L+ KG+ + YRFL
Sbjct: 247 MKFTYCDERIAEVAGYSPDDLIGCSAYEYIHALDSDAVSRSIHTLLSKGQAVTGQYRFLA 306
Query: 75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
+ ++W QT+ + + E I+C H ++S V
Sbjct: 307 RTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRV 342
>sp|Q03355|PER_DROSI Period circadian protein (Fragments) OS=Drosophila simulans GN=per
PE=3 SV=2
Length = 656
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-----SCYYRFLTK 75
D A +GYLP +++G S D+YH +DL + +E +M+KG+ S YRFL +
Sbjct: 391 DSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQ 450
Query: 76 GQQWIWLQTRFYITYHQWNSKPEFIVCTHRV 106
++ L+T + + W+ K EF+V HRV
Sbjct: 451 NGCYVLLETEWTSFVNPWSRKLEFVVGHHRV 481
>sp|Q03354|PER_DROSE Period circadian protein (Fragments) OS=Drosophila sechellia GN=per
PE=3 SV=2
Length = 661
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-----SCYYRFLTK 75
D A +GYLP +++G S D+YH +DL + +E +M+KG+ S YRFL +
Sbjct: 390 DSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQ 449
Query: 76 GQQWIWLQTRFYITYHQWNSKPEFIVCTHRV 106
++ L+T + + W+ K EF+V HRV
Sbjct: 450 NGCYVLLETEWTSFVNPWSRKLEFVVGHHRV 480
>sp|Q03353|PER_DROMA Period circadian protein (Fragments) OS=Drosophila mauritiana
GN=per PE=3 SV=2
Length = 676
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-----SCYYRFLTK 75
D A +GYLP +++G S D+YH +DL + +E +M+KG+ S YRFL +
Sbjct: 391 DSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQ 450
Query: 76 GQQWIWLQTRFYITYHQWNSKPEFIVCTHRV 106
++ L+T + + W+ K EF+V HRV
Sbjct: 451 NGCYVLLETEWTSFVNPWSRKLEFVVGHHRV 481
>sp|Q25637|PER_PERAM Period circadian protein OS=Periplaneta americana GN=per PE=2 SV=2
Length = 893
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 26 PIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT--SCYYRFLTKGQQWIWLQ 83
P +GYLP E+LG S D+YH +DL + ++ +MQ+ S YRF + +I L+
Sbjct: 409 PYLGYLPHEMLGNSVLDFYHPEDLPFLKEVYQIVMQENGAPFRSKPYRFRSHNGGYILLE 468
Query: 84 TRFYITYHQWNSKPEFIVCTHRVV 107
T + + W+ K EF+V HRV+
Sbjct: 469 TEWSSFVNPWSKKLEFVVGQHRVL 492
>sp|Q24767|PER_DROYA Period circadian protein OS=Drosophila yakuba GN=per PE=3 SV=1
Length = 1208
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-----SCYYRFLTK 75
D A +GYLP +++G S D+YH +DL + +E +M+KG+ S YRFL +
Sbjct: 409 DSAAVSALGYLPQDLIGRSIMDFYHQEDLSVMKETYEMVMKKGQTAGASFCSKPYRFLIQ 468
Query: 76 GQQWIWLQTRFYITYHQWNSKPEFIVCTHRV 106
++ L+T + + W+ K EF+V HRV
Sbjct: 469 NGCYVLLETEWTSFVNPWSRKLEFVVGHHRV 499
>sp|Q8QGQ7|BMAL2_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Gallus gallus GN=ARNTL2 PE=1 SV=1
Length = 622
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-SCYYRFLTKGQQW 79
D A I+GYLP E+LGTS Y+Y H DD + + H+ ++Q E + Y+F K +
Sbjct: 370 DQRATAILGYLPQELLGTSCYEYCHQDDHNHLAEKHKEVLQNKEKVFTNSYKFRAKDGSF 429
Query: 80 IWLQTRFYITYHQWNSKPEFIVCTHRVV 107
I L+++++ + W + E+IV + VV
Sbjct: 430 ITLKSQWFSFMNPWTKELEYIVSNNTVV 457
>sp|Q03297|PER_DROWI Period circadian protein (Fragment) OS=Drosophila willistoni GN=per
PE=3 SV=2
Length = 1093
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-----SCYYRFLTK 75
D A +GYLP +++G S D+YH +DL + +E +M+KG+ S YRFL +
Sbjct: 317 DSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKDTYETVMKKGQTAGASFCSKPYRFLIQ 376
Query: 76 GQQWIWLQTRFYITYHQWNSKPEFIVCTHRV 106
++ L+T + + W+ K EF+V HRV
Sbjct: 377 NGCFVLLETEWTSFVNPWSRKLEFVVGHHRV 407
>sp|O15945|ARNT_DROME Aryl hydrocarbon receptor nuclear translocator homolog
OS=Drosophila melanogaster GN=tgo PE=1 SV=3
Length = 642
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 27 IIGYLPFEVLGTSGYDYYHVDDLDSVV-TCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
I+GY P E+LG YD++H +D + + + L QKG+ S YR K +++WL+T+
Sbjct: 305 ILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQ 364
Query: 86 FYITYHQWNSKPEFIVCTH 104
Y + + + E+IVCT+
Sbjct: 365 AYAFLNPYTDEVEYIVCTN 383
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,253,394
Number of Sequences: 539616
Number of extensions: 2390055
Number of successful extensions: 4375
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4206
Number of HSP's gapped (non-prelim): 132
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)