Query psy10825
Match_columns 140
No_of_seqs 119 out of 1133
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 19:27:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14598 PAS_11: PAS domain; P 99.9 8.2E-24 1.8E-28 136.8 11.9 105 8-112 3-111 (111)
2 PF08447 PAS_3: PAS fold; Int 99.7 1.7E-17 3.6E-22 102.7 7.2 86 17-104 1-91 (91)
3 KOG3558|consensus 99.7 1.1E-17 2.4E-22 132.6 6.8 117 7-123 274-394 (768)
4 PF13426 PAS_9: PAS domain; PD 99.7 8.7E-17 1.9E-21 100.8 9.4 102 7-109 3-104 (104)
5 PF00989 PAS: PAS fold; Inter 99.6 6.1E-15 1.3E-19 93.7 9.4 103 4-107 10-113 (113)
6 PF08448 PAS_4: PAS fold; Int 99.5 7.9E-14 1.7E-18 88.1 8.8 105 5-111 5-109 (110)
7 KOG3559|consensus 99.4 1.4E-13 3.1E-18 104.2 5.4 118 5-122 225-344 (598)
8 PRK13557 histidine kinase; Pro 99.3 1.1E-11 2.4E-16 98.0 8.7 107 7-114 42-151 (540)
9 PRK10060 RNase II stability mo 99.3 1.2E-11 2.7E-16 101.3 8.3 124 5-129 121-245 (663)
10 KOG3560|consensus 99.3 8.8E-12 1.9E-16 97.3 6.9 99 14-114 292-390 (712)
11 cd00130 PAS PAS domain; PAS mo 99.2 2E-10 4.3E-15 67.0 9.8 100 7-107 4-103 (103)
12 PRK13559 hypothetical protein; 99.2 6.4E-11 1.4E-15 90.0 9.1 106 7-113 55-163 (361)
13 PRK09776 putative diguanylate 99.2 5E-12 1.1E-16 107.8 3.1 109 7-116 295-404 (1092)
14 PRK11091 aerobic respiration c 99.2 6.3E-11 1.4E-15 98.4 9.0 108 6-114 166-273 (779)
15 KOG3753|consensus 99.2 2.5E-11 5.3E-16 99.0 6.3 104 5-108 329-437 (1114)
16 PRK13558 bacterio-opsin activa 99.1 3.4E-10 7.3E-15 92.6 10.2 100 14-114 170-269 (665)
17 TIGR00229 sensory_box PAS doma 99.1 1.2E-09 2.5E-14 66.6 9.2 106 7-114 15-121 (124)
18 PRK13560 hypothetical protein; 99.1 2.2E-10 4.7E-15 94.6 7.6 107 6-113 215-323 (807)
19 TIGR02040 PpsR-CrtJ transcript 99.1 3E-10 6.4E-15 88.9 7.9 102 4-110 5-107 (442)
20 TIGR02040 PpsR-CrtJ transcript 99.1 4.2E-10 9.2E-15 88.0 7.7 103 7-113 264-367 (442)
21 TIGR02938 nifL_nitrog nitrogen 99.1 4.4E-10 9.4E-15 87.7 7.1 106 7-113 16-121 (494)
22 PRK11359 cyclic-di-GMP phospho 99.0 1.5E-09 3.2E-14 90.1 8.7 107 7-114 148-255 (799)
23 PRK09776 putative diguanylate 99.0 2E-09 4.4E-14 92.0 8.1 105 7-113 422-527 (1092)
24 PRK11359 cyclic-di-GMP phospho 98.9 1.1E-09 2.4E-14 90.8 5.2 106 8-116 25-134 (799)
25 PRK13560 hypothetical protein; 98.8 2E-08 4.4E-13 83.0 8.9 98 17-115 496-596 (807)
26 PF13596 PAS_10: PAS domain; P 98.7 8.3E-07 1.8E-11 56.3 11.6 98 5-108 9-106 (106)
27 KOG3561|consensus 98.5 9.3E-08 2E-12 78.9 4.2 103 7-109 372-477 (803)
28 PRK11360 sensory histidine kin 98.5 8.3E-07 1.8E-11 70.8 8.1 105 6-114 273-378 (607)
29 TIGR02966 phoR_proteo phosphat 98.4 4.9E-07 1.1E-11 67.1 4.7 94 7-114 18-111 (333)
30 PRK11073 glnL nitrogen regulat 98.4 8.6E-07 1.9E-11 66.9 6.0 97 6-111 18-115 (348)
31 PF12860 PAS_7: PAS fold 98.3 3.1E-06 6.8E-11 54.3 6.6 98 7-114 7-114 (115)
32 KOG3561|consensus 97.7 8.2E-06 1.8E-10 67.7 0.7 47 8-54 108-154 (803)
33 KOG0501|consensus 97.7 0.00017 3.7E-09 58.2 7.4 94 14-109 39-135 (971)
34 COG2202 AtoS FOG: PAS/PAC doma 97.5 0.0015 3.2E-08 42.8 9.1 103 7-111 124-229 (232)
35 TIGR02938 nifL_nitrog nitrogen 97.5 3.2E-05 6.9E-10 60.4 0.7 105 7-114 142-255 (494)
36 KOG3558|consensus 97.4 0.00013 2.7E-09 59.5 3.2 52 9-60 133-184 (768)
37 PRK11006 phoR phosphate regulo 97.2 0.0002 4.3E-09 55.9 2.1 93 6-114 109-201 (430)
38 PRK10820 DNA-binding transcrip 97.1 0.0011 2.3E-08 53.6 5.5 96 5-110 90-188 (520)
39 smart00091 PAS PAS domain. PAS 97.1 0.0005 1.1E-08 36.1 2.6 53 7-59 13-65 (67)
40 PF07310 PAS_5: PAS domain; I 97.0 0.0046 1E-07 41.1 7.3 83 17-103 53-135 (137)
41 COG5002 VicK Signal transducti 96.9 0.0022 4.8E-08 49.1 5.1 96 11-114 127-222 (459)
42 TIGR02373 photo_yellow photoac 96.8 0.0057 1.2E-07 40.0 6.1 63 10-72 31-95 (124)
43 KOG1229|consensus 96.7 0.0007 1.5E-08 53.1 1.2 85 17-102 179-264 (775)
44 smart00086 PAC Motif C-termina 96.6 0.021 4.5E-07 26.6 6.7 40 69-109 3-42 (43)
45 KOG3559|consensus 96.6 0.0022 4.7E-08 49.7 3.3 49 7-55 91-139 (598)
46 PRK11086 sensory histidine kin 96.4 0.015 3.1E-07 46.4 6.9 93 7-113 233-329 (542)
47 PF08670 MEKHLA: MEKHLA domain 96.2 0.052 1.1E-06 36.7 7.8 96 5-102 39-140 (148)
48 PRK11388 DNA-binding transcrip 96.0 0.018 3.9E-07 47.6 5.8 80 5-91 213-293 (638)
49 COG3829 RocR Transcriptional r 95.9 0.0078 1.7E-07 48.4 3.4 96 5-111 127-223 (560)
50 COG5000 NtrY Signal transducti 95.9 0.025 5.4E-07 46.3 6.0 95 7-110 382-477 (712)
51 PF13188 PAS_8: PAS domain; PD 95.8 0.0037 8.1E-08 35.5 0.7 32 7-42 13-44 (64)
52 KOG3560|consensus 95.6 0.01 2.2E-07 47.6 2.7 53 5-57 121-173 (712)
53 COG3290 CitA Signal transducti 94.7 0.052 1.1E-06 43.7 4.4 96 5-113 225-323 (537)
54 PRK15053 dpiB sensor histidine 94.6 0.15 3.2E-06 41.0 6.8 93 5-111 232-326 (545)
55 KOG3753|consensus 93.8 0.046 9.9E-07 46.3 2.4 48 8-55 195-242 (1114)
56 COG3852 NtrB Signal transducti 93.7 0.13 2.7E-06 39.1 4.4 96 5-108 18-114 (363)
57 PRK09959 hybrid sensory histid 93.0 0.62 1.4E-05 41.2 8.2 29 6-34 587-615 (1197)
58 PF08446 PAS_2: PAS fold; Int 92.8 0.11 2.3E-06 33.3 2.5 46 8-53 18-67 (110)
59 PF08348 PAS_6: YheO-like PAS 91.0 0.97 2.1E-05 29.4 5.5 50 66-118 68-117 (118)
60 COG5388 Uncharacterized protei 90.5 1.3 2.8E-05 31.3 6.0 97 7-107 59-159 (209)
61 COG3283 TyrR Transcriptional r 70.7 2.2 4.7E-05 33.5 1.1 43 11-53 96-138 (511)
62 PF06785 UPF0242: Uncharacteri 62.7 3.1 6.8E-05 31.9 0.5 73 14-90 307-379 (401)
63 COG0093 RplN Ribosomal protein 48.7 23 0.0005 23.0 2.7 27 71-98 68-94 (122)
64 COG2461 Uncharacterized conser 36.9 1.6E+02 0.0035 23.4 6.2 97 11-114 306-402 (409)
65 COG4251 Bacteriophytochrome (l 27.4 16 0.00035 30.7 -0.5 46 9-54 33-79 (750)
66 PF06528 Phage_P2_GpE: Phage P 26.9 14 0.00031 19.1 -0.6 20 25-44 5-24 (39)
67 PF10921 DUF2710: Protein of u 25.3 99 0.0021 19.4 2.7 35 2-36 48-82 (109)
68 PF09292 Neil1-DNA_bind: Endon 21.8 62 0.0013 16.5 1.1 14 70-83 18-31 (39)
No 1
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=99.91 E-value=8.2e-24 Score=136.83 Aligned_cols=105 Identities=41% Similarity=0.721 Sum_probs=94.7
Q ss_pred EEEEEe--cCCEEEEcCC-cccccCcCcchhcCCCcceeeCccCHHH-HHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 8 TFCMSD--LMNSTIYDLV-APPIIGYLPFEVLGTSGYDYYHVDDLDS-VVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 8 ~~v~~~--d~~i~~~n~a-~~~~lGy~~~el~g~~~~~~vhpdd~~~-~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
+|+.++ ||+|++++++ +..++||.++||+|+++++++||+|.+. +.+.+..++..|+.....||++.++|+|+|++
T Consensus 3 ~F~trhs~dgki~~~d~~~v~~~lgy~~~eLvG~s~y~~~H~~D~~~~~~~~~~~~~~~g~~~~~~yR~~~k~g~~vwvq 82 (111)
T PF14598_consen 3 EFTTRHSLDGKITYVDSRAVSSLLGYLPEELVGRSIYDFVHPDDLQRVLKQHHREVLQKGQSVSPYYRFRTKNGGYVWVQ 82 (111)
T ss_dssp EEEEEEETTSBEEEEETTHHHHHHSS-HHHHTTSBGGGGBSCCTHHHHHHHHHHHHHHHSSEEEEEEEEE-TTSSEEEEE
T ss_pred eEEEEECCCcEEEEEcCccChhhcCCCcHHHcCCchHHhCCHhhhhhHHHHHHHHHhhCCCcCcceEEEEecCCcEEEEE
Confidence 567666 5579999999 6999999999999999999999999997 88899999999998887899999999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchhh
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVNV 112 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~~ 112 (140)
+.+.++.+|+++++++|+|++.++++.|+
T Consensus 83 t~~~~~~n~~~~~~~~Iv~~n~vlse~e~ 111 (111)
T PF14598_consen 83 TKATLFYNPWTSKPEFIVCTNTVLSEEEA 111 (111)
T ss_dssp EEEEEEEETTTTCEEEEEEEEEEESCEB-
T ss_pred EEEEEEECCCCCCccEEEEEEEEeccCCC
Confidence 99999999999999999999999998764
No 2
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=99.73 E-value=1.7e-17 Score=102.72 Aligned_cols=86 Identities=26% Similarity=0.360 Sum_probs=73.1
Q ss_pred EEEEcCCcccccCcCcchhcCCC----cceeeCccCHHHHHHHHHH-HHHcCCcccEEeeeEecCCcEEEEEEEEEEEEe
Q psy10825 17 STIYDLVAPPIIGYLPFEVLGTS----GYDYYHVDDLDSVVTCHEA-LMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91 (140)
Q Consensus 17 i~~~n~a~~~~lGy~~~el~g~~----~~~~vhpdd~~~~~~~~~~-~~~~g~~~~~e~r~~~~~G~~~wv~~~~~~~~~ 91 (140)
++|+|+++++++||+++++ +.. +.+++||||++.+.+.+.. ....+.....+||+++++|+++|++.++.++++
T Consensus 1 ~i~~s~~~~~i~G~~~~~~-~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~~~~~~~d 79 (91)
T PF08447_consen 1 IIYWSDNFYEIFGYSPEEI-GKPDFEEWLERIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEVRGRPIFD 79 (91)
T ss_dssp -EEE-THHHHHHTS-HHHH-TCBEHHHHHHHB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEEEEEEEET
T ss_pred CEEEeHHHHHHhCCCHHHh-ccCCHHHHHhhcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEEEEEEEEC
Confidence 5899999999999999999 666 8999999999999999999 677777889999999999999999999999997
Q ss_pred cCCCCceEEEEEe
Q psy10825 92 QWNSKPEFIVCTH 104 (140)
Q Consensus 92 ~~~~~~~~iv~~~ 104 (140)
+ +|++..++|++
T Consensus 80 ~-~g~~~~~~Gv~ 91 (91)
T PF08447_consen 80 E-NGKPIRIIGVI 91 (91)
T ss_dssp T-TS-EEEEEEEE
T ss_pred C-CCCEEEEEEEC
Confidence 5 78888898874
No 3
>KOG3558|consensus
Probab=99.72 E-value=1.1e-17 Score=132.58 Aligned_cols=117 Identities=32% Similarity=0.528 Sum_probs=103.5
Q ss_pred eEEEEEe--cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEE
Q psy10825 7 VTFCMSD--LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 7 ~~~v~~~--d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~ 84 (140)
-.|+.|| |++|+||+.++.+++||+++||+|+++|+++|+.|.+.+.+.+..++..|+..+..||+..++|.++|+++
T Consensus 274 ~~FvtRhs~DmkityCedRisdlm~y~PeeLvGrS~Ye~~Ha~Ds~~v~KSh~dL~~KGQv~TgyYR~lak~GGyvWlQT 353 (768)
T KOG3558|consen 274 HMFVTRHSLDMKITYCEDRISDLMDYEPEELVGRSCYEFVHALDSDRVRKSHHDLLTKGQVVTGYYRLLAKNGGYVWLQT 353 (768)
T ss_pred ceeEEeeecceeEEEEchhHHHHhcCCHHHhhchhHHHhhhHhhhhHHHHHHHHHHhcCccchhHHHHHHhcCCeEEEEe
Confidence 3688886 55799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCceEEEEEeEEccchh--hhhhccCCCCcc
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVSYVN--VLRRDNNQVPDS 123 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it~~~--~~~~~~~q~~~~ 123 (140)
.+.++++..+.+.++|||++-+++..+ .+-....|++-.
T Consensus 354 qATVi~~tkn~q~q~IicVnYVlS~~e~~~~vl~~~Q~e~~ 394 (768)
T KOG3558|consen 354 QATVIYNTKNPQEQNIICVNYVLSNIEEEDLVLDLDQLPAS 394 (768)
T ss_pred eeEEEecCCCCCcceEEEEEeeeccccccCceeeHhhCccc
Confidence 999999988888899999999999764 333444444443
No 4
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=99.71 E-value=8.7e-17 Score=100.78 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=89.4
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~ 86 (140)
..++++.+|.|+++|++++.++||++++++|+++.+++++++.....+.+...+..+.....+..+.+++|+.+|+..++
T Consensus 3 ~i~i~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~ 82 (104)
T PF13426_consen 3 GIFILDPDGRILYVNPAFERLFGYSREELIGKSISDFFPEEDRPEFEEQIERALEEGGSWSGEVRLRRKDGETFWVEVSA 82 (104)
T ss_dssp EEEEEETTSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCHHHHHHHHHHHHHTSSEEEEEEEEETTSEEEEEEEEE
T ss_pred EEEEECCcCcEEehhHHHHHHHCcCHHHHcCCCcccccCcccchhhHHHHHHHHhcCCceeEEEEEEcCCCCEEEEEEEE
Confidence 35788999999999999999999999999999999999988877777888888877777777899999999999999999
Q ss_pred EEEEecCCCCceEEEEEeEEccc
Q psy10825 87 YITYHQWNSKPEFIVCTHRVVSY 109 (140)
Q Consensus 87 ~~~~~~~~~~~~~iv~~~~~it~ 109 (140)
.++.+. +++..+++++.+|||+
T Consensus 83 ~~i~~~-~g~~~~~i~~~~DiTe 104 (104)
T PF13426_consen 83 SPIRDE-DGEITGIIGIFRDITE 104 (104)
T ss_dssp EEEEET-TSSEEEEEEEEEEEHH
T ss_pred EEEECC-CCCEEEEEEEEEECCC
Confidence 999986 5778899999999984
No 5
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=99.61 E-value=6.1e-15 Score=93.72 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=85.7
Q ss_pred ccceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc-ccEEeeeEecCCcEEEE
Q psy10825 4 FKPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG-TSCYYRFLTKGQQWIWL 82 (140)
Q Consensus 4 ~~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~-~~~e~r~~~~~G~~~wv 82 (140)
+....++++.+|+|+++|++++.++||++++++|+++.+++||++.......+......+.. ...+.++..++|+.+|+
T Consensus 10 ~~~~i~~~d~~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 89 (113)
T PF00989_consen 10 SPDGIFVIDEDGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRRELRERLRQALSQGESGESFEVRFRLRDGRPRWV 89 (113)
T ss_dssp SSSEEEEEETTSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHHHHHHHHHHHHHHCCHECEEEEEEEETTSCEEEE
T ss_pred CCceEEEEeCcCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhHHHHHHHHHHHHcCCCceeEEEEEEecCCcEEEE
Confidence 45567889999999999999999999999999999999999999877677777777766565 46667777789999999
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEc
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVV 107 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~i 107 (140)
..++.++.+. ++++.+++++..||
T Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~DI 113 (113)
T PF00989_consen 90 EVRASPVRDE-DGQIIGILVIFRDI 113 (113)
T ss_dssp EEEEEEEEET-TEEEEEEEEEEEE-
T ss_pred EEEEEEEEeC-CCCEEEEEEEEEeC
Confidence 9999999986 45666888888876
No 6
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=99.53 E-value=7.9e-14 Score=88.15 Aligned_cols=105 Identities=13% Similarity=0.155 Sum_probs=91.4
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEE
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~ 84 (140)
....+++|.+++++++|+++..++|+++++++|+++.+++++++.+.+...+.+++.++.....+..... +|..+|++.
T Consensus 5 p~~i~v~D~~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 83 (110)
T PF08448_consen 5 PDGIFVIDPDGRIVYANQAAAELFGVSPEELIGRSLFDLLPPEDREEFQAALRRALAGGEPVFFEEILLR-DGEERWFEV 83 (110)
T ss_dssp SSEEEEEETTSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCGCHHHHHHHHHHHHHHTSEEEEEEEECT-TSCEEEEEE
T ss_pred CceeEEECCCCEEEEEHHHHHHHhCCCHHHHhhccchhccccchhhhhHHHHHHhhccCceEEEEEEEee-cCCcEEEEE
Confidence 4567889999999999999999999999999999999999998999999999999988887665555444 899999999
Q ss_pred EEEEEEecCCCCceEEEEEeEEccchh
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVSYVN 111 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it~~~ 111 (140)
+..|+.++ +|++.+++++..|||+..
T Consensus 84 ~~~Pi~~~-~g~~~g~~~~~~DiT~~r 109 (110)
T PF08448_consen 84 SISPIFDE-DGEVVGVLVIIRDITERR 109 (110)
T ss_dssp EEEEEECT-TTCEEEEEEEEEEECCHH
T ss_pred EEEEeEcC-CCCEEEEEEEEEECchhh
Confidence 99999987 577889999999999764
No 7
>KOG3559|consensus
Probab=99.44 E-value=1.4e-13 Score=104.17 Aligned_cols=118 Identities=28% Similarity=0.408 Sum_probs=103.3
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEE
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~ 84 (140)
|--.|+...|++++|.+.++..++||++++|++++++.++|-.|...+..++..++..|+..+..||++.+.|+|+|++.
T Consensus 225 NmFmfraslDlkliF~D~rv~qltgYepqdliektLY~~ih~~D~~~lr~~H~~ll~kGqvtTkYYR~l~k~ggwvwvqs 304 (598)
T KOG3559|consen 225 NMFMFRASLDLKLIFLDSRVHQLTGYEPQDLIEKTLYHHIHGCDSFHLRCAHHLLLVKGQVTTKYYRFLLKQGGWVWVQS 304 (598)
T ss_pred ceEEEEeecceEEEeehhhHHHhhCCCchhhhhHHHHHHhhhhhHHHHHHHHHHHHhccccccHHHHHHHcCCceEEEEE
Confidence 33455666788999999999999999999999999999999999999999999999899998889999999999999999
Q ss_pred EEEEEEecCCCCceEEEEEeEEccchh--hhhhccCCCCc
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVSYVN--VLRRDNNQVPD 122 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it~~~--~~~~~~~q~~~ 122 (140)
.+....+..+.++.+++.++.+.++.| .++....|...
T Consensus 305 yat~vHnSrSSR~~fivSvnyVls~~EyK~LqLsl~Q~s~ 344 (598)
T KOG3559|consen 305 YATFVHNSRSSRPHFIVSVNYVLSELEYKELQLSLEQVST 344 (598)
T ss_pred eeEEEeccccCCcceEEeeeeeeehhhhhhheechhhhcc
Confidence 999999988888999999999998765 45555555543
No 8
>PRK13557 histidine kinase; Provisional
Probab=99.30 E-value=1.1e-11 Score=98.04 Aligned_cols=107 Identities=9% Similarity=-0.004 Sum_probs=88.3
Q ss_pred eEEEEEe---cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 7 VTFCMSD---LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 7 ~~~v~~~---d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
..++++. +++++|+|++++.++||++++++|+++..+++|++.......+...+..+.....+++..+++|+.+|+.
T Consensus 42 ~i~v~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 121 (540)
T PRK13557 42 PMIVTDPNQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETDRATVAEVRDAIAERREIATEILNYRKDGSSFWNA 121 (540)
T ss_pred cEEEEcCCCCCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcCCCCCHHHHHHHHHHHHcCCCceEEEEEEeCCCCEEEEE
Confidence 3456664 7789999999999999999999999999999988776666666666666666666778889999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
..+.++.+. ++.+.+++++.+|+|+++..+
T Consensus 122 ~~~~~i~~~-~g~~~~~~~~~~dit~~~~~e 151 (540)
T PRK13557 122 LFVSPVYND-AGDLVYFFGSQLDVSRRRDAE 151 (540)
T ss_pred EEEEEeECC-CCCEEEEEEEecChHHHHHHH
Confidence 999999885 567788899999999765544
No 9
>PRK10060 RNase II stability modulator; Provisional
Probab=99.28 E-value=1.2e-11 Score=101.28 Aligned_cols=124 Identities=10% Similarity=0.167 Sum_probs=91.9
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceee-CccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYY-HVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~v-hpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
+...++++.+|+++++|++++.++||++++++|+++.+++ +|++.......+......+..+..++++++++|..+|+.
T Consensus 121 ~~gI~i~D~~g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~~ 200 (663)
T PRK10060 121 NSVIVILDSRGNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVERWIKTRKGQRLFLF 200 (663)
T ss_pred CceEEEEeCCCCEEEEcHHHHHHHCcCHHHHcCCCHHHHhCChhhHHHHHHHHHHHHhcCCceEEEEEEEeCCCCEEEEE
Confidence 4457788999999999999999999999999999987766 566666666666677777777778899999999999977
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchhhhhhccCCCCcccccCCC
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSND 129 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~~~~q~~~~~~~~~~ 129 (140)
....+ .+..++...+++++.+|||+.+..++..+++.....+++.
T Consensus 201 ~~~~~-~~~~g~~~~~~i~~~~DITe~k~~e~~l~~~a~~D~LTGL 245 (663)
T PRK10060 201 RNKFV-HSGSGKNEIFLICSGTDITEERRAQERLRILANTDSITGL 245 (663)
T ss_pred eeeEE-EcCCCCceEEEEEEEEechHHHHHHHHHHHHhhcCccCCC
Confidence 65443 3322333456888999999877666555554444444443
No 10
>KOG3560|consensus
Probab=99.28 E-value=8.8e-12 Score=97.30 Aligned_cols=99 Identities=28% Similarity=0.470 Sum_probs=91.0
Q ss_pred cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEEEEEEecC
Q psy10825 14 LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYHQW 93 (140)
Q Consensus 14 d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~~~~~~~~ 93 (140)
|+..+-++.++..++||...||.|+..+++||-+|...+.+++.+.+++|+.....||..+++|.|.|++.++..++.
T Consensus 292 Dfa~vs~Dak~k~~lgy~eaEL~~m~gY~lvH~~D~~y~Aeah~e~iktgeSGmlvyR~qtk~grw~wvqssarllyk-- 369 (712)
T KOG3560|consen 292 DFALVSMDAKVKATLGYCEAELHGMPGYNLVHVEDKVYMAEAHSEGIKTGESGMLVYREQTKAGRWAWVQSSARLLYK-- 369 (712)
T ss_pred ccceeccchhhhhhhccchhhccCCCccceeehhhhhhhhHHHHHHhhcCCcceEEEEEeecCCcEEEeeccceeeee--
Confidence 344667899999999999999999999999999999999999999999999988889999999999999999999987
Q ss_pred CCCceEEEEEeEEccchhhhh
Q psy10825 94 NSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 94 ~~~~~~iv~~~~~it~~~~~~ 114 (140)
++++.+|+++++-..++|+.+
T Consensus 370 ngkPD~vi~thr~l~DeEgh~ 390 (712)
T KOG3560|consen 370 NGKPDLVIDTHRGLGDEEGHR 390 (712)
T ss_pred cCCCCEEEecCCCccchHHHH
Confidence 789999999999999887644
No 11
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=99.24 E-value=2e-10 Score=67.01 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=80.7
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~ 86 (140)
..++.+.++.++++|+++..++|+++.++.|..+.+++++++...+...+......+.....++++...+|..+|+....
T Consensus 4 ~i~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (103)
T cd00130 4 GVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTLEVRLRRKDGSVIWVLVSL 83 (103)
T ss_pred eEEEECCCCcEEEECHHHHHHhCCCHHHHcCccHHHhcCCccchHHHHHHHHHHhcCcCeEEEEEEEccCCCEEEEEEEE
Confidence 45677889999999999999999999999999999999999888777777777655555667788888889999999888
Q ss_pred EEEEecCCCCceEEEEEeEEc
Q psy10825 87 YITYHQWNSKPEFIVCTHRVV 107 (140)
Q Consensus 87 ~~~~~~~~~~~~~iv~~~~~i 107 (140)
.+..+. ++....++++..|+
T Consensus 84 ~~~~~~-~~~~~~~~~~~~di 103 (103)
T cd00130 84 TPIRDE-GGEVIGLLGVVRDI 103 (103)
T ss_pred EEEecC-CCCEEEEEEEEecC
Confidence 887764 34566666665553
No 12
>PRK13559 hypothetical protein; Provisional
Probab=99.23 E-value=6.4e-11 Score=89.98 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=85.7
Q ss_pred eEEEEEe---cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 7 VTFCMSD---LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 7 ~~~v~~~---d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
..++++. ++.++++|++++.++||+.++++|+++..+.++++.......+...+..+.....+++..+++|..+|+.
T Consensus 55 ~i~i~D~~~~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~ 134 (361)
T PRK13559 55 AMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAATDPIAVAKIRAAIAAEREIVVELLNYRKDGEPFWNA 134 (361)
T ss_pred cEEEecCCCCCCcEEEEchHHHHHhCCCHHHHcCCChhhhcCCCCCHHHHHHHHHHhccCCceEEEEEEEcCCCCEEEEE
Confidence 3456665 4579999999999999999999999988777776666666666666666666677788889999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchhhh
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL 113 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~~~ 113 (140)
.+..++++. +|...+++++..|||+++..
T Consensus 135 ~~~~~i~d~-~G~~~~~v~~~~DITerk~~ 163 (361)
T PRK13559 135 LHLGPVYGE-DGRLLYFFGSQWDVTDIRAV 163 (361)
T ss_pred EEEEEEEcC-CCCEEEeeeeeeehhcchhh
Confidence 999999875 56777888999999976543
No 13
>PRK09776 putative diguanylate cyclase; Provisional
Probab=99.22 E-value=5e-12 Score=107.77 Aligned_cols=109 Identities=11% Similarity=0.100 Sum_probs=92.7
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc-ccEEeeeEecCCcEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG-TSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~-~~~e~r~~~~~G~~~wv~~~ 85 (140)
..++.+.+|+++++|+++++++||+++++.|+++.+++||+|.......+.....++.. ...++++++++|+.+|+..+
T Consensus 295 ~i~~~d~dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~ 374 (1092)
T PRK09776 295 GMALVGTEGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLLSGEINSYSMEKRYYRRDGEVVWALLA 374 (1092)
T ss_pred eEEEEcCCCcEEehhHHHHHHhCCCHHHHccCCceeccCcchhHhHHHHHHHHHcCCccceeeeeEEEcCCCCEEEEEEE
Confidence 45778899999999999999999999999999999999999998887777777654333 57789999999999999999
Q ss_pred EEEEEecCCCCceEEEEEeEEccchhhhhhc
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it~~~~~~~~ 116 (140)
..++.+. +|.+.+++++..|||+++..++.
T Consensus 375 ~~~~~~~-~g~~~~~i~~~~DITerk~~e~~ 404 (1092)
T PRK09776 375 VSLVRDT-DGTPLYFIAQIEDINELKRTEQV 404 (1092)
T ss_pred EEEEECC-CCCEeeehhhHHhhHHHHHHHHH
Confidence 9999886 57788899999999987655443
No 14
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.21 E-value=6.3e-11 Score=98.42 Aligned_cols=108 Identities=9% Similarity=0.056 Sum_probs=93.6
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~ 85 (140)
...++.+.+|+++++|++++.++||++++++|+++.++++|++...+......+...+.....+.++..++|..+|+..+
T Consensus 166 ~~i~~~D~~g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~~~~ 245 (779)
T PRK11091 166 DLVYYRNEDGEFSGCNRAMELLTGKSEKQLIGLTPKDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFELR 245 (779)
T ss_pred ceEEEECCCCcEEeEcHHHHHHhCcCHHHHcCCChHHhCCHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCCEEEEEEE
Confidence 34577889999999999999999999999999999999999888877777777777777777888889999999999999
Q ss_pred EEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
..++.+. +|...+++++.+|||+.+..+
T Consensus 246 ~~pi~~~-~g~~~g~v~~~~DITe~k~~e 273 (779)
T PRK11091 246 KVPFYDR-VGKRHGLMGFGRDITERKRYQ 273 (779)
T ss_pred eeeEEcC-CCCEEEEEEEEeehhHHHHHH
Confidence 9999875 577788999999999875444
No 15
>KOG3753|consensus
Probab=99.21 E-value=2.5e-11 Score=99.01 Aligned_cols=104 Identities=28% Similarity=0.485 Sum_probs=93.5
Q ss_pred cceEEEEEecCC--EEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHc-CCc--ccEEeeeEecCCcE
Q psy10825 5 KPVTFCMSDLMN--STIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQK-GEG--TSCYYRFLTKGQQW 79 (140)
Q Consensus 5 ~~~~~v~~~d~~--i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~-g~~--~~~e~r~~~~~G~~ 79 (140)
|=..|+.+|... |..|+.++..+|||-+++|+|+++++++||+|+..+.+.++.+++. |++ ....|||..+||.+
T Consensus 329 ~KriFtT~HTptClf~hVDeaAVp~LGyLPqDLIG~sil~f~H~eDr~vm~q~H~~v~q~~G~p~F~~sp~Rf~aqNG~y 408 (1114)
T KOG3753|consen 329 NKRIFTTTHTPTCLFQHVDEAAVPLLGYLPQDLIGTSILAFVHPEDRHVMVQIHQKVLQSGGKPVFSHSPIRFCAQNGSY 408 (1114)
T ss_pred ccceeEeccCCcceeeecchhhhhhhccCchhhhccchhhhhcCCchHHHHHHHHHHHHhCCCCcccccceeeeecCCcE
Confidence 334788898876 7789999999999999999999999999999999999999999875 455 25679999999999
Q ss_pred EEEEEEEEEEEecCCCCceEEEEEeEEcc
Q psy10825 80 IWLQTRFYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 80 ~wv~~~~~~~~~~~~~~~~~iv~~~~~it 108 (140)
+-++++|..+.|||+.++.++||-|++-+
T Consensus 409 v~ldTeWSsFVNPWSRKieFVvGRHrVrt 437 (1114)
T KOG3753|consen 409 VRLDTEWSSFVNPWSRKIEFVVGRHRVRT 437 (1114)
T ss_pred EEEechhhhccChhhhheeeeeeeceeec
Confidence 99999999999999999999999998776
No 16
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.15 E-value=3.4e-10 Score=92.59 Aligned_cols=100 Identities=18% Similarity=0.067 Sum_probs=84.7
Q ss_pred cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEEEEEEecC
Q psy10825 14 LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYHQW 93 (140)
Q Consensus 14 d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~~~~~~~~ 93 (140)
++.++++|++++.++||++++++|+++..+.+|++.......+...+..+.....++++++++|.++|+..+..++.+.
T Consensus 170 dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~- 248 (665)
T PRK13558 170 DEPLIYINDAFERITGYSPDEVLGRNCRFLQGEDTNEERVAELREAIDEERPTSVELRNYRKDGSTFWNQVDIAPIRDE- 248 (665)
T ss_pred CCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcCCCccHHHHHHHHHHHhcCCCeEEEEEEECCCCCEEEEEEEEEEEECC-
Confidence 6789999999999999999999999998888887766556666666667777788899999999999999999999875
Q ss_pred CCCceEEEEEeEEccchhhhh
Q psy10825 94 NSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 94 ~~~~~~iv~~~~~it~~~~~~ 114 (140)
.|.+..++++..|||+++..+
T Consensus 249 ~G~~~~~vgi~~DITerk~~E 269 (665)
T PRK13558 249 DGTVTHYVGFQTDVTERKEAE 269 (665)
T ss_pred CCCEEEEEEEEEeCcHHHHHH
Confidence 567788999999999765443
No 17
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=99.11 E-value=1.2e-09 Score=66.59 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=83.3
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCC-cccEEeeeEecCCcEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGE-GTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~-~~~~e~r~~~~~G~~~wv~~~ 85 (140)
..++++.++.+.++|+++..++|++..++.|..+.+++++++...+...+......+. ....++++...+|..+|+...
T Consensus 15 ~~~~~d~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (124)
T TIGR00229 15 AIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVRERIERLLEGEREPVSEERRVRRKDGSEIWVEVS 94 (124)
T ss_pred eEEEEcCCCcEEEEchHHHHHhCCChHHhcCcchhhhcChhhhHHHHHHHHHHHcCCCCCcceEeeeEcCCCCEEEEEEE
Confidence 4567788899999999999999999999999999998888887777766666665332 245566667889999999988
Q ss_pred EEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
..++. . ++....++++..|+++....+
T Consensus 95 ~~~~~-~-~~~~~~~~~~~~dit~~~~~~ 121 (124)
T TIGR00229 95 VSPIR-T-NGGELGVVGIVRDITERKQAE 121 (124)
T ss_pred Eeehh-h-CCCeeEEEEEeeehhHHHHHH
Confidence 88776 3 456677888888988765543
No 18
>PRK13560 hypothetical protein; Provisional
Probab=99.11 E-value=2.2e-10 Score=94.63 Aligned_cols=107 Identities=13% Similarity=-0.003 Sum_probs=82.5
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~ 85 (140)
...++.+.+|+++++|++++.++||++++++|+++.++.++++..............+.....++++++++|..+|+...
T Consensus 215 ~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~ 294 (807)
T PRK13560 215 DPAFWKDEDAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQPADDYQEADAAKFDADGSQIIEAEFQNKDGRTRPVDVI 294 (807)
T ss_pred CeEEEEcCCCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCcchhHHHHHHHHHHhccCCceEEEEEEEcCCCCEEEEEEE
Confidence 34567888999999999999999999999999999998877665555444444444555566788999999999977765
Q ss_pred EEE--EEecCCCCceEEEEEeEEccchhhh
Q psy10825 86 FYI--TYHQWNSKPEFIVCTHRVVSYVNVL 113 (140)
Q Consensus 86 ~~~--~~~~~~~~~~~iv~~~~~it~~~~~ 113 (140)
... ..+. ++.+..++++..|||+++..
T Consensus 295 ~~~~~~~~~-~g~~~g~~~~~~DITerk~~ 323 (807)
T PRK13560 295 FNHAEFDDK-ENHCAGLVGAITDISGRRAA 323 (807)
T ss_pred ecceEEEcC-CCCEEEEEEEEEechHHHHH
Confidence 544 4443 56677899999999976443
No 19
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=99.11 E-value=3e-10 Score=88.89 Aligned_cols=102 Identities=8% Similarity=-0.099 Sum_probs=79.6
Q ss_pred ccceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc-ccEEeeeEecCCcEEEE
Q psy10825 4 FKPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG-TSCYYRFLTKGQQWIWL 82 (140)
Q Consensus 4 ~~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~-~~~e~r~~~~~G~~~wv 82 (140)
++...++++.+|.++++|++++.++||++++++|+++.+++||++.+.+...+......+.. ...+++..+++|.++|+
T Consensus 5 ~~d~~~~~d~~g~i~~~n~~~~~~~g~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~ 84 (442)
T TIGR02040 5 AADVTLLLDAEGVVREVAANPHHPSFEQLSEWEGRRWEEIVTAESVEKFELRLSEALRTGRGAVRVELNHIDPSSFELPM 84 (442)
T ss_pred cCcEEEEECCCCcEEEEEECCCcccccccccCCCCcHhHhhCcchHHHHHHHHHHHhccCCCcceEeeccCCCCCCccCe
Confidence 35566778899999999999999999999999999999999999988888887776665543 44556666777778888
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEccch
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
..+..++.+ ...++++.+|+++.
T Consensus 85 ~~~~~~~~~-----~~~~~~i~rDi~~~ 107 (442)
T TIGR02040 85 RFILVRLGA-----DRGVLALGRDLRAV 107 (442)
T ss_pred EEEEEEeCC-----CCeEEEEecccHHH
Confidence 877655433 23567888898753
No 20
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=99.08 E-value=4.2e-10 Score=88.02 Aligned_cols=103 Identities=8% Similarity=-0.122 Sum_probs=78.0
Q ss_pred eEEEEEecCCEEEEcCCcccccCcC-cchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYL-PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~-~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~ 85 (140)
..+++|.+|+|+++|++++.++||+ +++++|+++.++++++... ....+......|.....+.++++++|..+|++.+
T Consensus 264 ~I~v~D~~G~I~~~N~a~~~l~G~~~~~~l~G~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~ve~s 342 (442)
T TIGR02040 264 AIVFSDADGTIRGANEAFLELTDSSSLEAVRGRTLDRWLGRGGVD-LRVLLSNVRRTGQVRLYATTLTGEFGAQTEVEIS 342 (442)
T ss_pred eEEEEcCCCcEEehhHHHHHHhCCCChHHHcCCCHHHHhCCCccc-HHHHHHHHhhcCceEEEEEEEEcCCCCEEEEEEE
Confidence 4567889999999999999999997 5789999988887744322 2223344444555556777889999999999999
Q ss_pred EEEEEecCCCCceEEEEEeEEccchhhh
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVSYVNVL 113 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it~~~~~ 113 (140)
+.++.+. + ...++++.+|||++...
T Consensus 343 ~~~i~~~--~-~~~~~~v~rDITeR~~~ 367 (442)
T TIGR02040 343 AAWVDQG--E-RPLIVLVIRDISRRLTM 367 (442)
T ss_pred EEEeccC--C-ceEEEEEEecchhhccC
Confidence 9998753 2 24678889999987555
No 21
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.06 E-value=4.4e-10 Score=87.69 Aligned_cols=106 Identities=10% Similarity=-0.003 Sum_probs=83.5
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~ 86 (140)
..++.+.+++++++|++++.++||++++++|++...+.++.+.......+......+.+...+++.++++|.++|+..+.
T Consensus 16 ~i~~~d~~g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (494)
T TIGR02938 16 AISITDLKANILYANDAFTRITGYTKEEIIGKNESVLSNHTTPPEVYQALWGSLAEQKPWAGKLLNRRKDGELYLAELTV 95 (494)
T ss_pred eEEEECCCCcEEEEchhheeecCCCHHHHhCCCchhhcCCCCCHHHHHHHHHHHHhCCcccceeeccCCCccchhhheee
Confidence 35678888999999999999999999999998877777665554444455555555666666677789999999999998
Q ss_pred EEEEecCCCCceEEEEEeEEccchhhh
Q psy10825 87 YITYHQWNSKPEFIVCTHRVVSYVNVL 113 (140)
Q Consensus 87 ~~~~~~~~~~~~~iv~~~~~it~~~~~ 113 (140)
.++.+. ++....++++..|||+.+..
T Consensus 96 ~~~~~~-~g~~~~~~~~~~DIt~~k~~ 121 (494)
T TIGR02938 96 APVLNE-AGETTHFLGMHRDITELHRL 121 (494)
T ss_pred EEEECC-CCCEEEEEEehhhhhHHHHH
Confidence 888875 57778899999999976543
No 22
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=99.01 E-value=1.5e-09 Score=90.13 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=85.4
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeC-ccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYH-VDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vh-pdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~ 85 (140)
..++.+.+++++++|++++.++||+++++.|+.+.++++ |++.......+......+.....++++.+++|.++|+..+
T Consensus 148 ~i~~~d~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~ 227 (799)
T PRK11359 148 PVIVLDPERRIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKAS 227 (799)
T ss_pred cEEEEcCCCcEEEEChhhHhhhCCCHHHHCCCChHHhcCCCCCcHHHHHHHHHhhccCCCCcceeEEeCCCCCEEEEEee
Confidence 356778899999999999999999999999999888775 4444444455555555555566778999999999999999
Q ss_pred EEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
..++.+. ++.+.+++++..|||+++..+
T Consensus 228 ~~~v~d~-~g~~~~~~~~~~DITerk~~e 255 (799)
T PRK11359 228 ISPVYDV-LAHLQNLVMTFSDITEERQIR 255 (799)
T ss_pred eeeeecC-CCceeEEEEEeehhhhHHHHH
Confidence 9888875 566778899999999876544
No 23
>PRK09776 putative diguanylate cyclase; Provisional
Probab=98.97 E-value=2e-09 Score=92.00 Aligned_cols=105 Identities=12% Similarity=0.015 Sum_probs=90.6
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcC-CCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLG-TSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g-~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~ 85 (140)
..+..+.+++++++|+++.+++||++++..+ ..+.+.+||+|.+.+...+.....++.....++|+++++| ++|+...
T Consensus 422 ~i~~~d~~~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG-~~w~~~~ 500 (1092)
T PRK09776 422 GIWEWDLKPNIISWDKRMFELYEIPPHIKPTWQVWYACLHPEDRQRVEKEIRDALQGRSPFKLEFRIVVKDG-VRHIRAL 500 (1092)
T ss_pred eEEEEecCCCeEeeCHHHHHHhCCCcccCCCHHHHHHhcCHhHHHHHHHHHHHHHhcCCCeeEEEEEEcCCc-eEEEEEe
Confidence 4567888999999999999999999988544 3467889999999998888888888888889999999999 9999999
Q ss_pred EEEEEecCCCCceEEEEEeEEccchhhh
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVSYVNVL 113 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it~~~~~ 113 (140)
+.++.+. +|++..++++..|||+++..
T Consensus 501 ~~~~~d~-~G~~~~~ig~~~DITerk~~ 527 (1092)
T PRK09776 501 ANRVLNK-DGEVERLLGINMDMTEVRQL 527 (1092)
T ss_pred eEEEECC-CCCEEEEEeeeeehhHHHHH
Confidence 9998875 67888999999999976543
No 24
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=98.94 E-value=1.1e-09 Score=90.85 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=81.1
Q ss_pred EEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc----ccEEeeeEecCCcEEEEE
Q psy10825 8 TFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG----TSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 8 ~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~----~~~e~r~~~~~G~~~wv~ 83 (140)
.++.+.+|+++++|++++.++||+++|++|+++.++++|++.......+......+.. ...++++++++|..+|+.
T Consensus 25 i~~~d~~g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~ 104 (799)
T PRK11359 25 AVLINENDEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTR 104 (799)
T ss_pred EEEEcCCCeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCccccccchHHHhhhhccCCccccccceeeEEecCCcCEEEEE
Confidence 5677889999999999999999999999999999999988776555555555444332 244789999999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchhhhhhc
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~~ 116 (140)
.+..++.. ++.. .++++..|+|++...++.
T Consensus 105 ~~~~~~~~--~g~~-~~~~~~~DiT~~~~~~~~ 134 (799)
T PRK11359 105 FALSKVSA--EGKV-YYLALVRDASVEMAQKEQ 134 (799)
T ss_pred EEeeeecc--CCce-EEEEEEeeccchhhhHHH
Confidence 88766643 3443 467888899876544443
No 25
>PRK13560 hypothetical protein; Provisional
Probab=98.82 E-value=2e-08 Score=83.04 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=81.0
Q ss_pred EEEEcCCcccccCcCcchhcC--CCcceeeCccCHHHHHHHHHHHHHcCCc-ccEEeeeEecCCcEEEEEEEEEEEEecC
Q psy10825 17 STIYDLVAPPIIGYLPFEVLG--TSGYDYYHVDDLDSVVTCHEALMQKGEG-TSCYYRFLTKGQQWIWLQTRFYITYHQW 93 (140)
Q Consensus 17 i~~~n~a~~~~lGy~~~el~g--~~~~~~vhpdd~~~~~~~~~~~~~~g~~-~~~e~r~~~~~G~~~wv~~~~~~~~~~~ 93 (140)
.+.++.+....+||+++++++ ..+..++||+|...+...+......|.. ...++++.+++|.++|+.....+.+++
T Consensus 496 ~~~~~~~~~~~~G~~~~e~~~~~~~~~~~~~p~d~~~~~~~~~~~~~~g~~~~~~e~r~~~~dG~~~w~~~~~~~~~d~- 574 (807)
T PRK13560 496 PVELVSKNITQFGYEPDEFISGKRMFAAIIHPADLEQVAAEVAEFAAQGVDRFEQEYRILGKGGAVCWIDDQSAAERDE- 574 (807)
T ss_pred eEEEecchhhhcCCCHHHhhcccchHhhhcChhhHHHHHHHHHHHHhcCCccceeEEEEEcCCCCEEEEEecceeeeCC-
Confidence 445556667889999999985 3467899999999988888887766654 578899999999999999999999986
Q ss_pred CCCceEEEEEeEEccchhhhhh
Q psy10825 94 NSKPEFIVCTHRVVSYVNVLRR 115 (140)
Q Consensus 94 ~~~~~~iv~~~~~it~~~~~~~ 115 (140)
+|.+..++++..|||+++..++
T Consensus 575 ~G~~~~~~g~~~DITerK~aE~ 596 (807)
T PRK13560 575 EGQISHFEGIVIDISERKHAEE 596 (807)
T ss_pred CCCEEEEEEEEechHHHHHHHH
Confidence 6788899999999998765543
No 26
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=98.70 E-value=8.3e-07 Score=56.27 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=65.9
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEE
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~ 84 (140)
+-...++|.++++.+.|+++..+++..+. .+|+++.++.++.+.+.+.+.++.+. .|+....++.+ ..+| .|+..
T Consensus 9 ~~~i~~vD~~~~I~~~n~~a~~~f~~~~~-~iGr~l~~~~~~~~~~~l~~~i~~~~-~~~~~~~~~~~-~~~~--~~~~~ 83 (106)
T PF13596_consen 9 PIGIIFVDRNLRIRYFNPAAARLFNLSPS-DIGRPLFDIHPPLSYPNLKKIIEQVR-SGKEEEFEIVI-PNGG--RWYLV 83 (106)
T ss_dssp SSEEEEEETTSBEEEE-SCGC-SS---GG-GTTSBCCCSS-HHHHHHHHHHHHHHH-TTSBSEEEEEE-EETT--EEEEE
T ss_pred CCCEEEEcCCCeEEEeChhHhhhcCCChH-HCCCCHHHcCCccchHHHHHHHHHHH-cCCCceEEEEe-cCCC--EEEEE
Confidence 44567899999999999999999998754 47999999887777777877777776 44443333333 3555 46677
Q ss_pred EEEEEEecCCCCceEEEEEeEEcc
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it 108 (140)
+..|++++ +|+..+++.+..|||
T Consensus 84 ~~~P~~~~-~g~~~G~v~~~~DIT 106 (106)
T PF13596_consen 84 RYRPYRDE-DGEYAGAVITFQDIT 106 (106)
T ss_dssp EEEEEE-T-TS-EEEEEEEEEE-G
T ss_pred EEEEEECC-CCCEEEEEEEEEecC
Confidence 88899986 577888888888876
No 27
>KOG3561|consensus
Probab=98.52 E-value=9.3e-08 Score=78.94 Aligned_cols=103 Identities=27% Similarity=0.360 Sum_probs=90.9
Q ss_pred eEEEEEe--cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCC-cccEEeeeEecCCcEEEEE
Q psy10825 7 VTFCMSD--LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGE-GTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 7 ~~~v~~~--d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~-~~~~e~r~~~~~G~~~wv~ 83 (140)
..|..++ +|++++++.++..+.||.+.++.|++.+.+.|++|..++...+..+..... .....||++.++|.++|..
T Consensus 372 ~~~~sr~~~~g~~~~~dqr~~~i~~~~~~~~~g~ss~~s~h~~d~~~~~~s~~~~~~~s~~~~~~~yr~~~~n~~~~~~~ 451 (803)
T KOG3561|consen 372 SEFISRSSSDGSFTFVDQRASAILGYQPQELLGRSSYESSHPADSSPLSESLKQVQALSEQRSTLLYRFRSKNGSSIPNK 451 (803)
T ss_pred chhhcccCcCCceeccccccccccccCchhhcCcccccccCccccchhhchHHHHHHhcccccccccccccCCCCccccc
Confidence 3444554 567999999999999999999999999999999999999999988876433 4567799999999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccc
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSY 109 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~ 109 (140)
..++...++++.++.+++|++..+..
T Consensus 452 ~~~~~~~n~~s~~~~~~~~~ns~~~~ 477 (803)
T KOG3561|consen 452 SSAYLFSNPGSDEVEYIVCTNSNVPT 477 (803)
T ss_pred cccccccCCCccccceeeeccccccc
Confidence 99999999999999999999998885
No 28
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=98.46 E-value=8.3e-07 Score=70.82 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=80.2
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc-ccEEeeeEecCCcEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG-TSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~-~~~e~r~~~~~G~~~wv~~ 84 (140)
...++++.+++++++|+++..++||++++++|+++.++++++.. ....+......+.. ...++++..++|... +..
T Consensus 273 ~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 349 (607)
T PRK11360 273 DGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYSELFPPNTP--FASPLLDTLEHGTEHVDLEISFPGRDRTIE-LSV 349 (607)
T ss_pred CeEEEEcCCCCEEEECHHHHHHhCCChHHhcCCcHHHHcCCchh--HHHHHHHHHhcCCCccceEEEEEcCCCcEE-EEE
Confidence 45678889999999999999999999999999998888775432 22334444444444 456788888888876 888
Q ss_pred EEEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
+..++.++ ++++..++++..|+|+....+
T Consensus 350 ~~~~i~~~-~g~~~~~i~~~~Dite~~~~e 378 (607)
T PRK11360 350 STSLLHNT-HGEMIGALVIFSDLTERKRLQ 378 (607)
T ss_pred EEeeEEcC-CCCEEEEEEEEeechHHHHHH
Confidence 88888875 567788889999999765443
No 29
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=98.38 E-value=4.9e-07 Score=67.13 Aligned_cols=94 Identities=12% Similarity=0.011 Sum_probs=68.0
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~ 86 (140)
..++++.+|+++++|++++.++||+++++.|+.+.+++++++... .+..+.. ....++..++|..+|+....
T Consensus 18 ~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~-------~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 89 (333)
T TIGR02966 18 AVVVLDEEGQIEWCNPAAERLLGLRWPDDLGQRITNLIRHPEFVE-------YLAAGRF-SEPLELPSPINSERVLEIRI 89 (333)
T ss_pred cEEEECCCCcEEEEcHHHHHHhCCChHHHcCCcHHHHccCHHHHH-------HHHhccc-CCCeEeecCCCCceEEEEEE
Confidence 457788999999999999999999999999999999887754322 2222222 12244556788888988887
Q ss_pred EEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 87 YITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 87 ~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
.+..+. . +++...|+++.+..+
T Consensus 90 ~p~~~~---~---~~~~~~dit~~~~~~ 111 (333)
T TIGR02966 90 APYGEE---Q---KLLVARDVTRLRRLE 111 (333)
T ss_pred EEcCCC---c---eEEEEeCchHHHHHH
Confidence 776542 1 677888998765443
No 30
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=98.37 E-value=8.6e-07 Score=66.92 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=67.9
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcc-cEEeeeEecCCcEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-SCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~-~~e~r~~~~~G~~~wv~~ 84 (140)
...++++.++.|+++|++++.++||++++++|+.+.+++++.... ...+......+... ..+.+ ..++|..+|+..
T Consensus 18 ~gi~~~d~~~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~ 94 (348)
T PRK11073 18 NSILLLDDDLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLN--IELMRESLQAGQGFTDNEVT-LVIDGRSHILSL 94 (348)
T ss_pred CeEEEECCCCeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCcchhh--HHHHHHHHHcCCcccccceE-EEECCceEEEEE
Confidence 356778899999999999999999999999999998888654322 12333444444443 22233 346899999988
Q ss_pred EEEEEEecCCCCceEEEEEeEEccchh
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVSYVN 111 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it~~~ 111 (140)
+..++.. ..++....|+++..
T Consensus 95 ~~~~~~~------~~~~~~~~dit~~~ 115 (348)
T PRK11073 95 TAQRLPE------GMILLEMAPMDNQR 115 (348)
T ss_pred EEEEccC------ceeEEEEechhHHH
Confidence 8877651 34566677777654
No 31
>PF12860 PAS_7: PAS fold
Probab=98.30 E-value=3.1e-06 Score=54.35 Aligned_cols=98 Identities=14% Similarity=0.062 Sum_probs=63.7
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchh-cCCCcceee---------CccCHHHHHHHHHHHHHcCCcccEEeeeEecC
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEV-LGTSGYDYY---------HVDDLDSVVTCHEALMQKGEGTSCYYRFLTKG 76 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el-~g~~~~~~v---------hpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~ 76 (140)
-..+.|.+++++++|+++..++|++++.+ .|.++.+++ .+.+.......+......... ....+...+
T Consensus 7 Gv~v~D~~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d 84 (115)
T PF12860_consen 7 GVAVFDSDGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRRLAERGEFPPGDPEAWVRQRLARLRRRQP--RSFELRLPD 84 (115)
T ss_pred eEEEEcCCCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCC--ceeEEECCC
Confidence 34678899999999999999999999988 687766554 123332222222222222222 224455688
Q ss_pred CcEEEEEEEEEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 77 QQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 77 G~~~wv~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
|. |++.+..+..+ +.+|.+++|||+....+
T Consensus 85 gr--~l~~~~~~~~~------Gg~v~~~~DVT~~~~~E 114 (115)
T PF12860_consen 85 GR--WLEVRAQPLPD------GGFVLTFTDVTERRRAE 114 (115)
T ss_pred CE--EEEEEeEECCC------CCEEEEEEeCCHHHHhc
Confidence 85 66777666643 46889999999876554
No 32
>KOG3561|consensus
Probab=97.75 E-value=8.2e-06 Score=67.75 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=43.1
Q ss_pred EEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHH
Q psy10825 8 TFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVT 54 (140)
Q Consensus 8 ~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~ 54 (140)
.||+.++|+|+||+..+..+|||..+||.|+++++++||+|...+.+
T Consensus 108 ~fvV~cdG~IvyVSeSVT~~L~y~QsDL~~qSly~ilhp~d~~~~~~ 154 (803)
T KOG3561|consen 108 LFVVNCDGRIVYVSESVTSVLGYLQSDLMGQSLYDILHPLDNDKPRE 154 (803)
T ss_pred EEEEecCceEEEEecchHHhhCcCHHHHhcchHHHhcCccccCcccc
Confidence 58899999999999999999999999999999999999998765543
No 33
>KOG0501|consensus
Probab=97.71 E-value=0.00017 Score=58.16 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=73.9
Q ss_pred cCCEEEEcCCcccccCcCcchhcCCCc-ceeeCcc--CHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEEEEEE
Q psy10825 14 LMNSTIYDLVAPPIIGYLPFEVLGTSG-YDYYHVD--DLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITY 90 (140)
Q Consensus 14 d~~i~~~n~a~~~~lGy~~~el~g~~~-~~~vhpd--d~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~~~~~ 90 (140)
|.-|+|+|..++.+.||.+.|++.++. ..++|.+ |...+ +..+..+++.+.-.+|+-+..|+..++|+.....|++
T Consensus 39 D~PiVY~NdgFcKlsGY~RAevMQKs~tc~FMyGEltdk~ti-~k~~~t~eN~~~~qfEillyKKN~TPvW~~vqiAPIr 117 (971)
T KOG0501|consen 39 DWPIVYCNDGFCKLSGYHRAEVMQKSCTCSFMYGELTDKGTI-EKVRQTLENYETNQFEILLYKKNRTPVWLLVQIAPIR 117 (971)
T ss_pred ccceEEecCcchhccCccHHHHhcccceeeeeeccccchhhH-HHHHHHHHhhhhcceeeEeeecCCCceEEEEEeeccc
Confidence 445999999999999999999998875 5777755 33333 3344444555556788889999999999999999999
Q ss_pred ecCCCCceEEEEEeEEccc
Q psy10825 91 HQWNSKPEFIVCTHRVVSY 109 (140)
Q Consensus 91 ~~~~~~~~~iv~~~~~it~ 109 (140)
+. ..++..+.|++.|||.
T Consensus 118 Ne-~d~VVLfLctFkDIT~ 135 (971)
T KOG0501|consen 118 NE-KDKVVLFLCTFKDITA 135 (971)
T ss_pred CC-CceEEEEEeecccchh
Confidence 86 4567788999999994
No 34
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=97.52 E-value=0.0015 Score=42.76 Aligned_cols=103 Identities=19% Similarity=0.219 Sum_probs=68.4
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHH-HHHHHHHHHHc-CCcccEEeeeEecCCcE-EEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDS-VVTCHEALMQK-GEGTSCYYRFLTKGQQW-IWLQ 83 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~-~~~~~~~~~~~-g~~~~~e~r~~~~~G~~-~wv~ 83 (140)
..++.+.++.+.++|+++..++||+..+..+....++.+...... ........... ......+++...++|.. .|..
T Consensus 124 ~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 203 (232)
T COG2202 124 GIWVLDEDGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRKDGERVRWIL 203 (232)
T ss_pred eEEEEeCCCCEEEeCHHHHHHhCCChHHhcCCChhheEecCCCchhhHHHHHHhhccCCCCcceEEEEEecCCCEEEEEE
Confidence 345566688999999999999999988877777666654332221 12223333322 23357788999999995 8877
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchh
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVN 111 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~ 111 (140)
........ .+....+.+...|+++..
T Consensus 204 ~~~~~~~~--~~~~~~~~~~~~d~~~~~ 229 (232)
T COG2202 204 SRISPVRD--DGEIVGVVGIARDITERK 229 (232)
T ss_pred eeeeEecC--CCceEEEEEEEechHHHh
Confidence 77666553 356666777777776543
No 35
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.48 E-value=3.2e-05 Score=60.39 Aligned_cols=105 Identities=9% Similarity=-0.025 Sum_probs=68.1
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCc-EEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQ-WIWLQTR 85 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~-~~wv~~~ 85 (140)
..++.+.+++++++|++++.++|+...+..+..+.+.++|+....+...+... ......++++...+|. ++|+...
T Consensus 142 ~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 218 (494)
T TIGR02938 142 AFVLLDPTGRVILDNQEYKKLATDLRVKEPAHTVLDLLREAWREALAENWPQQ---LAFSNREARFDRGGGRPARWLSCT 218 (494)
T ss_pred eEEEEcCCCCEEEechhHHHhhchhhhhHHHHHHHHHhhHHhhhhhhhcchhh---hccccceeeeccCCCceeeEEEec
Confidence 45778889999999999999999998887777777777776554433221111 1112334555556655 7899888
Q ss_pred EEEEEecCCC--------CceEEEEEeEEccchhhhh
Q psy10825 86 FYITYHQWNS--------KPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 86 ~~~~~~~~~~--------~~~~iv~~~~~it~~~~~~ 114 (140)
+.++....+. ...+++++..|||+++..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DITe~k~~e 255 (494)
T TIGR02938 219 GSVIGMESDCADSFFCAAEQPYLLLTIADISNLREEQ 255 (494)
T ss_pred CceEEeecchhhheeccCCCchheehHHHHHHHHHHH
Confidence 7776553211 1234566778999765443
No 36
>KOG3558|consensus
Probab=97.41 E-value=0.00013 Score=59.48 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=46.8
Q ss_pred EEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHH
Q psy10825 9 FCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALM 60 (140)
Q Consensus 9 ~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~ 60 (140)
+++..||+++|++..+...+|.+.-||.|.+++|++||.|++-+.+.+....
T Consensus 133 m~l~~dG~~lYiSEtVS~yLGLSQvELTG~SvFDfiHP~DheE~~eqL~l~~ 184 (768)
T KOG3558|consen 133 MALTQDGDFLYISETVSIYLGLSQVELTGSSVFDFIHPCDHEEIAEQLGLRL 184 (768)
T ss_pred EEEccCCCEEEEechhHhhhCccceeeecchhhhccCccCHHHHHHHhcccc
Confidence 5678899999999999999999999999999999999999998887765443
No 37
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.20 E-value=0.0002 Score=55.94 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=58.8
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~ 85 (140)
...++++.+|+|+++|+++++++||+.+++.|+++.+++.+++... ....... .....+...+|.+ +..+
T Consensus 109 ~~i~~~d~~g~i~~~N~~a~~l~g~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~--~~~~ 178 (430)
T PRK11006 109 DAVVLTTEEGNIFWCNGLAQQLLGFRWPEDNGQNILNLLRYPEFTQ-------YLKTRDF-SRPLTLVLNNGRH--LEIR 178 (430)
T ss_pred CeEEEEcCCCceeHHHHHHHHHhCCCChHhCCCcHHHHhcCHHHHH-------HHHhccc-CCCeEEEcCCCCE--EEEE
Confidence 3457788999999999999999999999999999888776543321 1111111 1123334555654 4444
Q ss_pred EEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
..+..+ ..++.+.+|+|+.+..+
T Consensus 179 ~~~~~~------~~~~~~~~dit~~~~~e 201 (430)
T PRK11006 179 VMPYTE------GQLLMVARDVTQMHQLE 201 (430)
T ss_pred EEEcCC------CcEEEEEehhhHHHHHH
Confidence 333321 23566778888765444
No 38
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.12 E-value=0.0011 Score=53.59 Aligned_cols=96 Identities=8% Similarity=-0.028 Sum_probs=61.0
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEE
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~ 84 (140)
....+++|.+|+|+++|+++..++|++.+++.|+++.++++..+.. ..+..+........ ...+|..+++.
T Consensus 90 ~eGVi~vD~~G~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~~l~-------~~le~~~~~~~~~~-v~~~g~~~~v~- 160 (520)
T PRK10820 90 PEPVLSIDMKGKVELANPASCQLFGQSEEKLRNHTAAQLINGFNFL-------RWLESEPQDSHNEH-VVINGQDFLME- 160 (520)
T ss_pred CCcEEEECCCCeeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcchHH-------HHHHcCCCccceEE-EEECCEEEEEE-
Confidence 3456789999999999999999999999999999999998765432 23334443211122 23457665544
Q ss_pred EEEEEEec-CCCCc--eEEEEEeEEccch
Q psy10825 85 RFYITYHQ-WNSKP--EFIVCTHRVVSYV 110 (140)
Q Consensus 85 ~~~~~~~~-~~~~~--~~iv~~~~~it~~ 110 (140)
..|+... .++.. .+.|.+..++++.
T Consensus 161 -~~PI~~~d~~g~~~~~GaVivlrd~~~l 188 (520)
T PRK10820 161 -ITPVYLQDENDQHVLVGAVVMLRSTARM 188 (520)
T ss_pred -EEeeeecCCCCceeEEEEEEEeccHHHH
Confidence 4566521 13332 3455555566543
No 39
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=97.11 E-value=0.0005 Score=36.14 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=43.0
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHH
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEAL 59 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~ 59 (140)
..++.+.++.+.++|+.+..++|+...++.+..+.++++|.+...+...+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (67)
T smart00091 13 GIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPEDREEVQEALQRL 65 (67)
T ss_pred eEEEEcCCCeEEEECHHHHHHhCCCHHHHcCCcHHHhcCcccHHHHHHHHHHH
Confidence 44556777889999999999999999999999888999998887666555443
No 40
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=97.05 E-value=0.0046 Score=41.12 Aligned_cols=83 Identities=8% Similarity=0.081 Sum_probs=68.7
Q ss_pred EEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEEEEEEecCCCC
Q psy10825 17 STIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYHQWNSK 96 (140)
Q Consensus 17 i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~~~~~~~~~~~ 96 (140)
+..+-.++.+++|+ |+.|+.+.+++.|++...+...+..+...+.+.....+....+|.++.++.-..|+.+. ++.
T Consensus 53 ~RLaGt~i~~~~G~---d~tG~~~~el~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~g~~~~~e~l~LPL~~~-~~~ 128 (137)
T PF07310_consen 53 YRLAGTRIVELFGR---DLTGRRLSELFPPEDRERVRRAYRAVVERPAPVRARGRAEDADGRYLEYERLLLPLRSD-GGT 128 (137)
T ss_pred EEEecHHHHHHhCC---CCCCCCHHHhcChHhHHHHHHHHHHHHcCCceEEEEEEEecCCCCeeEEEEEEcccCCC-CCC
Confidence 66678888888986 67899999999999999999999999988888777788888899888777777777763 567
Q ss_pred ceEEEEE
Q psy10825 97 PEFIVCT 103 (140)
Q Consensus 97 ~~~iv~~ 103 (140)
+..++|.
T Consensus 129 v~rilG~ 135 (137)
T PF07310_consen 129 VDRILGA 135 (137)
T ss_pred ccEEEEe
Confidence 7788775
No 41
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.88 E-value=0.0022 Score=49.09 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=70.7
Q ss_pred EEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEEEEEE
Q psy10825 11 MSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITY 90 (140)
Q Consensus 11 ~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~~~~~ 90 (140)
.+..|+++.+|..+..+||.+.++++|+++.+++.-+|.-. ++.+.........+. .. +++.+-++.+.+.++
T Consensus 127 TdRrG~iI~iN~~A~k~L~~~~E~~~~~~i~elL~i~d~y~----~~dL~e~~~s~lld~--~~-~~E~~~lrv~Fs~i~ 199 (459)
T COG5002 127 TDRRGKIILINKPALKMLGVSKEDALGRSILELLKIEDTYT----FEDLVEKNDSLLLDS--SD-EEEGYVLRVNFSVIQ 199 (459)
T ss_pred ecCCCcEEEeccHHHHHhCcCHHHHhcccHHHHhCCcccee----HHHHHhcCCcEEEee--cC-CCccEEEEEEEEEEe
Confidence 56678999999999999999999999999998886554332 334443322233332 22 677778888888887
Q ss_pred ecCCCCceEEEEEeEEccchhhhh
Q psy10825 91 HQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 91 ~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
.. +|.+.++|++-.|+|+.+..+
T Consensus 200 rE-sGfisGlIaVlhDvTEqek~e 222 (459)
T COG5002 200 RE-SGFISGLIAVLHDVTEQEKVE 222 (459)
T ss_pred ec-ccccceeEEEEecccHHHHHH
Confidence 75 788888999999999765443
No 42
>TIGR02373 photo_yellow photoactive yellow protein. Members of this family are photoactive yellow protein, a cytosolic, 14-kDa light-sensing protein which has a 4-hydroxycinnamyl (p-coumaric acid) chromophore covalently linked to a Cys residue. The enzyme 4-coumarate--CoA ligase as described by TIGR02372 is required for its biosynthesis. The modified Cys is in a PAS (pfam00989) domain, frequently found in signal transducing proteins. Members are known in alpha and gamma Proteobacteria that include Rhodobacter capsulatus, Halorhodospira halophila, Rhodospirillum centenum, etc.
Probab=96.84 E-value=0.0057 Score=39.96 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=48.6
Q ss_pred EEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccC-HHHHHHHHHHHHHcCCc-ccEEeee
Q psy10825 10 CMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDD-LDSVVTCHEALMQKGEG-TSCYYRF 72 (140)
Q Consensus 10 v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd-~~~~~~~~~~~~~~g~~-~~~e~r~ 72 (140)
-+|.+|.++..|.+=..+.|++|+..+|++++.-+.|.- .......+.+....|.. ..++|-+
T Consensus 31 ~lD~~G~V~~YN~aE~~~sg~~p~~vlGr~FF~eVAPC~~~~~f~gRF~~g~~~g~Ld~~f~yvf 95 (124)
T TIGR02373 31 QLDGSGVILRYNAAEGRITGRDPERVIGRNFFKEVAPCTDIPEFSGRFMEGVASGTLNAMFDYVF 95 (124)
T ss_pred EECCCCEEEEEecchhhhcCCChhhhhchhhhhhcccccCCHHHHHHHHhhhhcCCCceEEEEEE
Confidence 467888899999999999999999999999999998874 44456666665555554 3555544
No 43
>KOG1229|consensus
Probab=96.68 E-value=0.0007 Score=53.08 Aligned_cols=85 Identities=13% Similarity=0.027 Sum_probs=59.7
Q ss_pred EEEEcCCcccccCcCcchhcCCCcceeeCcc-CHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEEEEEEecCCC
Q psy10825 17 STIYDLVAPPIIGYLPFEVLGTSGYDYYHVD-DLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYHQWNS 95 (140)
Q Consensus 17 i~~~n~a~~~~lGy~~~el~g~~~~~~vhpd-d~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~~~~~~~~~~ 95 (140)
+-|+||+++.+.||-+.|++|+...++--.+ .+..+...+...++.|.....++..+++.|..+--.....|+.++ +|
T Consensus 179 iQYVNpAfE~mmG~hkgEliGke~adlpkkdknradlldtintcikkgke~qG~~~aRRksgdS~dqh~~itP~~gq-gg 257 (775)
T KOG1229|consen 179 IQYVNPAFENMMGCHKGELIGKEEADLPKKDKNRADLLDTINTCIKKGKEAQGEEEARRKSGDSCDQHFIITPFAGQ-GG 257 (775)
T ss_pred HHHhcHHHHhhhcchhhhhcCCchhhccccccchhhhhhhhhHhhhcCccccchHHHhhccCCcccceEEEeeecCC-CC
Confidence 6799999999999999999999887764322 455666777777777777666666678888654323333455553 56
Q ss_pred CceEEEE
Q psy10825 96 KPEFIVC 102 (140)
Q Consensus 96 ~~~~iv~ 102 (140)
++..+|.
T Consensus 258 kirhfvs 264 (775)
T KOG1229|consen 258 KIRHFVS 264 (775)
T ss_pred ceeeehh
Confidence 6666654
No 44
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=96.62 E-value=0.021 Score=26.63 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=31.1
Q ss_pred EeeeEecCCcEEEEEEEEEEEEecCCCCceEEEEEeEEccc
Q psy10825 69 YYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSY 109 (140)
Q Consensus 69 e~r~~~~~G~~~wv~~~~~~~~~~~~~~~~~iv~~~~~it~ 109 (140)
++++...+|.+.|+.....++.+. ++....+++...|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~di~~ 42 (43)
T smart00086 3 EYRLRRKDGSYIWVLVSASPIRDE-DGEVEGILGVVRDITE 42 (43)
T ss_pred EEEEEecCCCEEEEEEEeEEEECC-CCCEEEEEEEEEeccC
Confidence 466778899999999888888763 5666778888888774
No 45
>KOG3559|consensus
Probab=96.60 E-value=0.0022 Score=49.72 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=43.9
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHH
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTC 55 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~ 55 (140)
-.||++.||+|.|++..+.-.||.+.-|+.|.++++++||.|..-...+
T Consensus 91 F~fvva~dGkimYISETaSvhLGLSQVElTGNsi~eYIH~~D~demna~ 139 (598)
T KOG3559|consen 91 FIFVVAPDGKIMYISETASVHLGLSQVELTGNSIYEYIHPQDHDEMNAV 139 (598)
T ss_pred eEEEEeCCCCEEEEecceeeeecceeeEeecchhhhhhcccchHHHHHH
Confidence 4689999999999999999999999999999999999999997754443
No 46
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.36 E-value=0.015 Score=46.42 Aligned_cols=93 Identities=16% Similarity=0.086 Sum_probs=60.6
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCc---chhcCCCcceeeCccCHHHHHHHHHHHHHcCCcc-cEEeeeEecCCcEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLP---FEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-SCYYRFLTKGQQWIWL 82 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~---~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~-~~e~r~~~~~G~~~wv 82 (140)
..+++|.+|+++++|+++++++|++. .+..|+.+.++.++.. +..+...+.+. ..+.. .+|..+
T Consensus 233 gIi~~D~~g~I~~~N~~a~~llg~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~~g~~~-- 300 (542)
T PRK11086 233 GVIAVDDRGEVTLINDEAKRLFNYKKGLEDDPLGTDVESWMPVSR-------LKEVLRTGTPRRDEEIN---INGRLL-- 300 (542)
T ss_pred cEEEECCCCeEEEEhHHHHHHhCCCcCCcccccCCcHHHhCCchh-------HHHHHhcCCCccceEEE---ECCEEE--
Confidence 45788999999999999999998753 4566666655554322 33444455543 22222 245443
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEccchhhh
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVVSYVNVL 113 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~ 113 (140)
..+..++.+ ++....++++.+|+|+.+.+
T Consensus 301 ~~~~~pi~~--~g~~~g~v~~~rDite~~~l 329 (542)
T PRK11086 301 LTNTVPVRV--NGEIIGAIATFRDKTEVRQL 329 (542)
T ss_pred EEEEEEEeE--CCEEEEEEEEEEEchHHHHH
Confidence 445567776 56677888999999976544
No 47
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=96.19 E-value=0.052 Score=36.73 Aligned_cols=96 Identities=8% Similarity=-0.068 Sum_probs=64.4
Q ss_pred cceEEEEEecCC----EEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcc-cEEeeeEecCCcE
Q psy10825 5 KPVTFCMSDLMN----STIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-SCYYRFLTKGQQW 79 (140)
Q Consensus 5 ~~~~~v~~~d~~----i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~-~~e~r~~~~~G~~ 79 (140)
+.+.-++-|+.+ ++|.|.++.++++|+-+++.+.+...-..|.++......+.++.+.|-.. ..=+|+ .+.|..
T Consensus 39 ~ap~ailsh~~~~dP~f~yaN~aaL~l~e~~w~el~~lPsr~sae~~~r~er~~lL~~v~~qG~~~~y~GiRi-ss~Grr 117 (148)
T PF08670_consen 39 HAPFAILSHGTKADPIFIYANQAALDLFETTWDELVGLPSRLSAEEPERKERQSLLAQVMQQGYIDNYSGIRI-SSTGRR 117 (148)
T ss_pred cCCCEEEEcCCCCCCEEEehhHHHHHHhcCCHHHHhcCcHhhccChhhHHHHHHHHHHHHHhCCccCCCeEEE-cCCCCe
Confidence 344556667664 99999999999999999999988776667777777777788887766542 222565 456766
Q ss_pred EEEEE-EEEEEEecCCCCceEEEE
Q psy10825 80 IWLQT-RFYITYHQWNSKPEFIVC 102 (140)
Q Consensus 80 ~wv~~-~~~~~~~~~~~~~~~iv~ 102 (140)
.+++- .+--+.+. +|...+.-.
T Consensus 118 f~ie~a~vW~l~D~-~g~~~GqAa 140 (148)
T PF08670_consen 118 FRIERATVWNLIDE-DGNYCGQAA 140 (148)
T ss_pred EEEeceEEEEEEcC-CCCEEEEEE
Confidence 66553 33334443 444444433
No 48
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.99 E-value=0.018 Score=47.58 Aligned_cols=80 Identities=8% Similarity=0.007 Sum_probs=56.0
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcc-cEEeeeEecCCcEEEEE
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-SCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~-~~e~r~~~~~G~~~wv~ 83 (140)
....+++|.+|.|+++|++++.++|++.++++|+++.++++.. ..+..++.++... ..+..+ ..+|..+|+.
T Consensus 213 ~~gVl~vD~~G~I~~~N~aa~~llg~s~~~l~G~~i~~l~~~~------~~l~~vl~~~~~~~~~~~~l-~~~g~~~~~~ 285 (638)
T PRK11388 213 DDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRAITELLTLP------AVLQQAIKQAHPLKHVEVTF-ESQGQFIDAV 285 (638)
T ss_pred CCcEEEECCCCeEehhhHHHHHHhCcCHHHHCCCcHHHHhccc------hHHHHHHhcCCceeeEEEEE-ecCCceEEEE
Confidence 3456789999999999999999999999999999988877421 1233445555543 233333 3356767787
Q ss_pred EEEEEEEe
Q psy10825 84 TRFYITYH 91 (140)
Q Consensus 84 ~~~~~~~~ 91 (140)
.+..++.+
T Consensus 286 v~~~Pi~~ 293 (638)
T PRK11388 286 ITLKPIIE 293 (638)
T ss_pred EEEEeecc
Confidence 77777753
No 49
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=95.94 E-value=0.0078 Score=48.43 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=64.8
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceee-CccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYY-HVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~v-hpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
....+++|.+|+++++|++...++|+++++++|+++.+++ -.+|. ....++.++++....+. +..|... .
T Consensus 127 ~~~l~vvD~~G~~i~~N~~~~~~~gl~~e~~~gk~~~~v~~~~~~s-----~~l~vl~~~kp~~~~~~--~~~~~~~--i 197 (560)
T COG3829 127 DDGLLVVDEDGIIIYYNKAYAKLLGLSPEEVLGKHLLDVVSAGEDS-----TLLEVLRTGKPIRDVVQ--TYNGNKI--I 197 (560)
T ss_pred cCceEEEcCCCcEEEEcHHHHHHhCCCHHHHcCCcHHHHHhccCCc-----eehhhhhcCCcceeeee--eecCCce--e
Confidence 4566889999999999999999999999999999888876 11122 23345566676433222 2333332 3
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchh
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVN 111 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~ 111 (140)
.+..+++. ++.....|++..+++..+
T Consensus 198 ~~~~pv~~--~g~l~G~v~~~~~~~~l~ 223 (560)
T COG3829 198 VNVAPVYA--DGQLIGVVGISKDVSELE 223 (560)
T ss_pred EeeccEec--CCcEEEEEEeecchHHHH
Confidence 33445554 467788888888888653
No 50
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=95.88 E-value=0.025 Score=46.27 Aligned_cols=95 Identities=11% Similarity=-0.055 Sum_probs=63.4
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc-ccEEeeeEecCCcEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG-TSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~-~~~e~r~~~~~G~~~wv~~~ 85 (140)
-=+..+++|.+..+||+++.++|.+-.++.|.++..+- | .+.+++...-..+.+ ...+..+. ..|+.+-+...
T Consensus 382 GVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~lsa~a-p----~~~~vf~~~~a~~~~~~~~ev~~~-r~g~~rtl~Vq 455 (712)
T COG5000 382 GVIGFDNRGCITTVNPSAEQILGKPFDQLLGQSLSAIA-P----ELEEVFAEAGAAARTDKRVEVKLA-REGEERTLNVQ 455 (712)
T ss_pred eEEEEcCCCeeEeecchHHHHhcCChhHhhcchhhhhh-h----HHHHHHHHhhhhcCCCccceeecc-cCCCceeeeee
Confidence 34678899999999999999999999999999866543 2 355555555444444 34555544 44555655555
Q ss_pred EEEEEecCCCCceEEEEEeEEccch
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
+..... + .-..+|.+.+|||+.
T Consensus 456 ~t~~~~--d-~~~gyVvt~DDITdL 477 (712)
T COG5000 456 ATREPE--D-NGNGYVVTFDDITDL 477 (712)
T ss_pred eeeccc--c-cCCceEEEecchHHH
Confidence 433322 1 234678899999964
No 51
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=95.77 E-value=0.0037 Score=35.55 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=22.3
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcce
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYD 42 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~ 42 (140)
..++.+ +++++++|+++++++||+ ..|+.+..
T Consensus 13 ~i~i~d-~~~i~~~N~~~~~l~g~~---~~~~~~~~ 44 (64)
T PF13188_consen 13 GILIID-GGRIIYVNPAFEELFGYS---LEGEDIGQ 44 (64)
T ss_dssp EEEEEE-TSBEEEE-HHHHHHHCS----HTCCCHHC
T ss_pred ceEEEE-CCChHHhhHHHHHHhCCC---CCCCCHHH
Confidence 445666 668999999999999998 55554443
No 52
>KOG3560|consensus
Probab=95.57 E-value=0.01 Score=47.61 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=47.1
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHH
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHE 57 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~ 57 (140)
|--.+|+..+|.|-|++..+++.||+..++++.++++++||.||++.+.+.+.
T Consensus 121 nGF~lVvt~eg~ifyAS~tIedYLGFhQSDV~HQsVYdlIHseDR~dfqrQLh 173 (712)
T KOG3560|consen 121 NGFALVVTAEGEIFYASATIEDYLGFHQSDVMHQSVYDLIHSEDRQDFQRQLH 173 (712)
T ss_pred CCeEEEEecCceEEEehhhHHhhhcccccchhhhhHHHHhhhhhHHHHHHHHh
Confidence 44567888999999999999999999999999999999999999987776554
No 53
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=94.74 E-value=0.052 Score=43.73 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=67.4
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcc--hhcCCCcceeeCccCHHHHHHHHHHHHHcCCcc-cEEeeeEecCCcEEE
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPF--EVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-SCYYRFLTKGQQWIW 81 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~--el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~-~~e~r~~~~~G~~~w 81 (140)
+.--+.++..|.|+.+|.+++.++|+... +.+|+++.+++.|+ . .+..+++.+++. ..+.+ -+|. |
T Consensus 225 ~EGviAvd~~G~It~~N~~A~~ll~~~~~~~~~ig~~i~~v~~p~-~-----~l~~vl~~~~~~~~~e~~---~ng~--~ 293 (537)
T COG3290 225 KEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIGRSIVEVLPPD-S-----DLPEVLETGKPQHDEEIR---INGR--L 293 (537)
T ss_pred hceEEEECCCCeEeehhHHHHHHhcccCcCcccccccceEeeccc-c-----CcHHHHhcCCcccchhhh---cCCe--E
Confidence 34456788889999999999999999775 68899999999883 1 133345566654 33333 3454 4
Q ss_pred EEEEEEEEEecCCCCceEEEEEeEEccchhhh
Q psy10825 82 LQTRFYITYHQWNSKPEFIVCTHRVVSYVNVL 113 (140)
Q Consensus 82 v~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~ 113 (140)
+-.+-.|++. +++....|.+++|-++...+
T Consensus 294 ~i~nr~pI~~--~~~~~GaI~tFRdktei~~L 323 (537)
T COG3290 294 LVANRVPIRS--GGQIVGAIITFRDKTEIKKL 323 (537)
T ss_pred EEEEeccEEE--CCEEeEEEEEEecHHHHHHH
Confidence 4555667765 57788888999888876433
No 54
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=94.57 E-value=0.15 Score=40.96 Aligned_cols=93 Identities=8% Similarity=-0.071 Sum_probs=57.1
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCc--chhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEE
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLP--FEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWL 82 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~--~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv 82 (140)
....+++|.+|+++++|++++.++|+.. ++++|+++.+++++.+.. ...... ....... ..+|.. +
T Consensus 232 ~egii~~D~~g~I~~~N~~a~~ll~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~-~~~~~~~---~~~~~~--~ 299 (545)
T PRK15053 232 YEGLIAVDPHGYITAINRNARKMLGLSSPGRQWLGKPIAEVVRPADFF------TEQIDE-KRQDVVA---NFNGLS--V 299 (545)
T ss_pred CceEEEECCCCeEEeecHHHHHHhCCCCcchhhcCCcHHHhCCCchhh------hhhcCC-cccceEE---EECCEE--E
Confidence 3456788999999999999999999975 468999988887654221 111111 1112212 224432 3
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEccchh
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVVSYVN 111 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~it~~~ 111 (140)
..+..++.. ++.....+....|+++..
T Consensus 300 ~~~~~~i~~--~~~~~G~v~~~~d~te~~ 326 (545)
T PRK15053 300 IANREAIRS--GDDLLGAIISFRSKDEIS 326 (545)
T ss_pred EEEeeeEEE--CCeEEEEEEEEEchHHHH
Confidence 345556654 344556677777887653
No 55
>KOG3753|consensus
Probab=93.83 E-value=0.046 Score=46.31 Aligned_cols=48 Identities=10% Similarity=-0.096 Sum_probs=42.1
Q ss_pred EEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHH
Q psy10825 8 TFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTC 55 (140)
Q Consensus 8 ~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~ 55 (140)
.++.++||+++|+.+.+..++||.++-+.+.++-|++||.|.......
T Consensus 195 ~~vS~~dG~iLyis~q~a~ilg~krDv~s~a~FvdflapqD~~vF~sf 242 (1114)
T KOG3753|consen 195 VAVSFLDGRILYISEQAALILGCKRDVLSSAKFVDFLAPQDVGVFYSF 242 (1114)
T ss_pred EEEeccCCcEEEeechhhhhccCchhhhccchhhhhcchhhhhhhhhc
Confidence 355678999999999999999999999999999999999998755444
No 56
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=93.75 E-value=0.13 Score=39.07 Aligned_cols=96 Identities=8% Similarity=0.093 Sum_probs=66.3
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCccc-EEeeeEecCCcEEEEE
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTS-CYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~-~e~r~~~~~G~~~wv~ 83 (140)
||+ +++++++.|.|+|++++.++|-+...|.+.++.+++..-. .+...+.++...+.... .+..+. .+|....++
T Consensus 18 ~pV-l~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~gs--~ll~ll~q~~~~~~~~~~~~v~l~-~~g~~~~v~ 93 (363)
T COG3852 18 NPV-LLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPFGS--LLLSLLDQVLERGQPVTEYEVTLV-ILGRSHIVD 93 (363)
T ss_pred Cce-EEEcCCCcEEecCHHHHHHHHHHHHHHhcCChHHHcCCCc--HHHHHHHHHHHhcCCcccceeeee-ecCccceEE
Confidence 444 4567799999999999999999999999999988886432 34556677776666642 223333 578777788
Q ss_pred EEEEEEEecCCCCceEEEEEeEEcc
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it 108 (140)
..+.++.. .+..++.....+.
T Consensus 94 ~~v~~v~~----~~G~vlle~~~~~ 114 (363)
T COG3852 94 LTVAPVPE----EPGSVLLEFHPRD 114 (363)
T ss_pred EEEeeccC----CCCeEEEEechhH
Confidence 77777653 3455555544443
No 57
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=92.96 E-value=0.62 Score=41.17 Aligned_cols=29 Identities=7% Similarity=-0.137 Sum_probs=24.1
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcch
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFE 34 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~e 34 (140)
...++++.+|+++++|++++.++|+....
T Consensus 587 ~~i~~~d~~g~i~~~N~~~~~~~g~~~~~ 615 (1197)
T PRK09959 587 NPTYVVNWQGNVISHNSAFEHYFTADYYK 615 (1197)
T ss_pred CcEEEEcCCCcEEEehHHHHHHhCccccc
Confidence 34578899999999999999999986433
No 58
>PF08446 PAS_2: PAS fold; InterPro: IPR013654 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; GO: 0008020 G-protein coupled photoreceptor activity, 0006355 regulation of transcription, DNA-dependent, 0009584 detection of visible light, 0018298 protein-chromophore linkage; PDB: 3S7O_A 2O9B_A 3S7P_A 1ZTU_A 3S7N_A 3S7Q_A 2O9C_A 2OOL_A 3C2W_G 3NHQ_B ....
Probab=92.76 E-value=0.11 Score=33.30 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=37.0
Q ss_pred EEEEEe-cCCEEEEcCCcccccCcC---cchhcCCCcceeeCccCHHHHH
Q psy10825 8 TFCMSD-LMNSTIYDLVAPPIIGYL---PFEVLGTSGYDYYHVDDLDSVV 53 (140)
Q Consensus 8 ~~v~~~-d~~i~~~n~a~~~~lGy~---~~el~g~~~~~~vhpdd~~~~~ 53 (140)
.++++. ++.|++++..+..++|.+ +++++|+++.+++.++....+.
T Consensus 18 LLa~d~~~~~I~~~S~N~~~~lg~~~~~~~~llG~~l~~ll~~~~~~~l~ 67 (110)
T PF08446_consen 18 LLALDPDDLRIVQASENIAELLGIPPELPEELLGRPLSELLGAESAERLR 67 (110)
T ss_dssp EEEEETTTTBEEEEETTHHHHHSS----HHHHTTCBHHHHSCCCCHHHHH
T ss_pred EEEEECCCCEEEEEcCCHHHHhCCccccchhhcccCHHHHhCHHHHHHHH
Confidence 345554 568999999999999999 8999999999999877665544
No 59
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=91.05 E-value=0.97 Score=29.36 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=38.7
Q ss_pred ccEEeeeEecCCcEEEEEEEEEEEEecCCCCceEEEEEeEEccchhhhhhccC
Q psy10825 66 TSCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNN 118 (140)
Q Consensus 66 ~~~e~r~~~~~G~~~wv~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~~~~ 118 (140)
....|..+.++|. -++++...+++. ++++.+++|++.|++.....+....
T Consensus 68 ~~~nY~~~~~~Gk--~lrSsT~~Ird~-~g~~iG~LCIN~D~s~~~~~~~~L~ 117 (118)
T PF08348_consen 68 YIINYKTKTKDGK--ILRSSTFFIRDE-NGKLIGALCINFDISALEQAQNFLD 117 (118)
T ss_pred ccccccccCCCCC--EEEEEEEEEECC-CCCEEEEEEEEeccHHHHHHHHHHc
Confidence 4556888899996 457788888885 6789999999999998776654433
No 60
>COG5388 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.52 E-value=1.3 Score=31.27 Aligned_cols=97 Identities=6% Similarity=-0.026 Sum_probs=71.4
Q ss_pred eEEEEEecCC----EEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEE
Q psy10825 7 VTFCMSDLMN----STIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWL 82 (140)
Q Consensus 7 ~~~v~~~d~~----i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv 82 (140)
--|++..+++ +..+-.+.|.++| .||.|..+.++..+.|+..+..+...+.+..-+.-+........|.-.-+
T Consensus 59 d~FiL~~~~~G~~~FRLAGTriC~LfG---RELr~~~F~sLW~~~~~~~~~r~~~~v~~~~tPvl~~~dg~s~~G~sl~f 135 (209)
T COG5388 59 DVFILERDGRGKLPFRLAGTRICDLFG---RELRGRDFLSLWAEADRLELKRAADGVRKRRTPVLVTADGRSHGGRSLGF 135 (209)
T ss_pred ceEEEeccCCCCceEEecccchhhhhc---hhhcCCchhHhccccchHHHHHHHHHHhhccCceEEecchhhccCcccce
Confidence 3467766663 6667888888888 68999999999999999999998888886555555555566777877778
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEc
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVV 107 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~i 107 (140)
+.-..++..+ ++....+.|....+
T Consensus 136 EmLl~PL~~~-~g~~~R~LGais~~ 159 (209)
T COG5388 136 EMLLAPLQGA-SGETDRFLGAISPI 159 (209)
T ss_pred eeeeecccCC-CCCccchhhhcccc
Confidence 8888787765 45544555554443
No 61
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=70.74 E-value=2.2 Score=33.54 Aligned_cols=43 Identities=7% Similarity=-0.051 Sum_probs=36.0
Q ss_pred EEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHH
Q psy10825 11 MSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVV 53 (140)
Q Consensus 11 ~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~ 53 (140)
+|--|++...||+++.++|.+++++.|.++..++...+.+.+.
T Consensus 96 vd~kg~v~~aNpAa~~l~~~~~~~~~g~~~~~l~~~~nf~~~l 138 (511)
T COG3283 96 VDMKGKVDMANPAACQLFGRKEDRLRGHTAAQLINGFNFLRWL 138 (511)
T ss_pred ecccCceeecCHHHHHHhCCChhhhcCccHHHhcCcCCHHHHH
Confidence 4444569999999999999999999999999999877766554
No 62
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=62.67 E-value=3.1 Score=31.89 Aligned_cols=73 Identities=16% Similarity=-0.038 Sum_probs=47.6
Q ss_pred cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEEEEEE
Q psy10825 14 LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITY 90 (140)
Q Consensus 14 d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~~~~~ 90 (140)
+-+.+|+|..+..++||+.++++. ...++|- +....|...+... +......-+-+++|+|+-+.+.+...++.
T Consensus 307 ~qRllFAN~~fk~wtGy~~edFl~-~~~dIV~-eGl~qW~~dL~~~--s~~E~~grlviKTK~~g~ipf~ycL~ii~ 379 (401)
T PF06785_consen 307 SQRLLFANSQFKTWTGYSSEDFLK-DFSDIVQ-EGLAQWETDLQLL--SRQERSGRLVIKTKNGGNIPFYYCLGIIP 379 (401)
T ss_pred hhHHHHhHHHHHHHhccCHHHHHh-cchHHHH-hhHHHHHHHHHhh--hhhhhhceEEEEecCCCceeeEEEEeecC
Confidence 346889999999999999999874 3445553 3455555555532 11112333567889998888776665543
No 63
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=48.72 E-value=23 Score=23.05 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=22.3
Q ss_pred eeEecCCcEEEEEEEEEEEEecCCCCce
Q psy10825 71 RFLTKGQQWIWLQTRFYITYHQWNSKPE 98 (140)
Q Consensus 71 r~~~~~G~~~wv~~~~~~~~~~~~~~~~ 98 (140)
.++++||+++-++.++..+.++. ++|.
T Consensus 68 ~~rR~DGs~i~FddNA~Viin~~-g~P~ 94 (122)
T COG0093 68 EVRRPDGSYIKFDDNAAVIINPD-GEPR 94 (122)
T ss_pred ceEcCCCCEEEeCCceEEEECCC-CCcc
Confidence 47899999999999999999874 5543
No 64
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=36.89 E-value=1.6e+02 Score=23.39 Aligned_cols=97 Identities=11% Similarity=0.094 Sum_probs=54.4
Q ss_pred EEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEEEEEE
Q psy10825 11 MSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITY 90 (140)
Q Consensus 11 ~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~~~~~ 90 (140)
++.+..+.|.|+. .+++-.++.. +|+.... .||.-...+...+.+..++|..-..++= ....+.++.+ +-.+++
T Consensus 306 vdk~diV~ffs~~-~rif~rt~sv-iGr~v~~-chpPksv~iv~ki~~~fksG~kd~~efw-~~~~~~~i~i--~Y~av~ 379 (409)
T COG2461 306 VDKNDIVRFFSGG-ERIFPRTPSV-IGRRVQL-CHPPKSVHIVEKILKDFKSGEKDFAEFW-INMGDKFIHI--RYFAVK 379 (409)
T ss_pred ecccceEEecCCc-ceecccChHh-hCCcccC-CCCCchHHHHHHHHHHhhcCCcchHHHh-ccCCCceEEE--EEEEEE
Confidence 4455556677776 7777777654 5766544 5554444444444444456665433333 3344454444 455677
Q ss_pred ecCCCCceEEEEEeEEccchhhhh
Q psy10825 91 HQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 91 ~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
+. .|+..+++-+..||+..+.++
T Consensus 380 de-~ge~~g~le~~qdi~~i~~l~ 402 (409)
T COG2461 380 DE-EGEYLGTLEVVQDITRIKELE 402 (409)
T ss_pred cC-CCceeeeehhhhhhHHHHhcc
Confidence 75 466666666777888665443
No 65
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=27.44 E-value=16 Score=30.72 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=35.3
Q ss_pred EEEE-ecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHH
Q psy10825 9 FCMS-DLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVT 54 (140)
Q Consensus 9 ~v~~-~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~ 54 (140)
++++ +++.++.++..+..++|..+++|.|+++.+++..+....+..
T Consensus 33 lvl~~~~~~Vlq~S~N~~~~LG~~~e~l~~~tl~~vl~~~qv~~l~~ 79 (750)
T COG4251 33 LVLDEADLMVLQASENCANILGREPEDLLGRTLGAVLTSEQVPPLQS 79 (750)
T ss_pred EEeecCCchhhhhhhhHHHHhCCChhhhhcCCHHHhcchhhccHHHH
Confidence 3444 566789999999999999999999999888876555444443
No 66
>PF06528 Phage_P2_GpE: Phage P2 GpE; InterPro: IPR009493 This entry is represented by Burkholderia phage phiE202, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.
Probab=26.87 E-value=14 Score=19.07 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=15.9
Q ss_pred ccccCcCcchhcCCCcceee
Q psy10825 25 PPIIGYLPFEVLGTSGYDYY 44 (140)
Q Consensus 25 ~~~lGy~~~el~g~~~~~~v 44 (140)
..++|++|+++-+.++.+++
T Consensus 5 A~~FhW~Pse~~~m~l~El~ 24 (39)
T PF06528_consen 5 AWVFHWPPSEMDAMSLDELM 24 (39)
T ss_pred eeecCCCHHHHhcCCHHHHH
Confidence 45799999999888876654
No 67
>PF10921 DUF2710: Protein of unknown function (DUF2710); InterPro: IPR024296 This family of uncharacterised proteins appears to be restricted to Mycobacteriaceae.
Probab=25.35 E-value=99 Score=19.36 Aligned_cols=35 Identities=17% Similarity=0.031 Sum_probs=25.4
Q ss_pred CCccceEEEEEecCCEEEEcCCcccccCcCcchhc
Q psy10825 2 VGFKPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVL 36 (140)
Q Consensus 2 ~~~~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~ 36 (140)
|+....-.+...||+++...-...-++||+-.+|.
T Consensus 48 vdlGDv~avaNSdGrL~~LtLhpgv~t~YshgeLa 82 (109)
T PF10921_consen 48 VDLGDVRAVANSDGRLLELTLHPGVMTGYSHGELA 82 (109)
T ss_pred ccCCcEEEEecCCCcEEEEEeccchhcCcchHHHH
Confidence 45556666777888888877777778888876653
No 68
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=21.78 E-value=62 Score=16.52 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=9.4
Q ss_pred eeeEecCCcEEEEE
Q psy10825 70 YRFLTKGQQWIWLQ 83 (140)
Q Consensus 70 ~r~~~~~G~~~wv~ 83 (140)
-.++..+|..+|++
T Consensus 18 ~sl~D~~gRTiWFq 31 (39)
T PF09292_consen 18 KSLRDRNGRTIWFQ 31 (39)
T ss_dssp EEEE-TTS-EEEES
T ss_pred ccccccCCCEEEee
Confidence 45678999999975
Done!