Query psy10825
Match_columns 140
No_of_seqs 119 out of 1133
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 19:27:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f1p_A Endothelial PAS domain- 99.9 3.7E-23 1.3E-27 131.4 9.2 109 4-112 6-116 (117)
2 3f1p_B ARYL hydrocarbon recept 99.9 1.3E-22 4.5E-27 129.7 11.7 107 5-111 10-119 (121)
3 4f3l_A Mclock, circadian locom 99.9 7E-23 2.4E-27 155.3 10.3 110 5-114 249-360 (361)
4 4dj3_A Period circadian protei 99.9 3.4E-22 1.2E-26 149.2 10.8 106 5-110 172-282 (317)
5 4dj2_A Period circadian protei 99.9 5.9E-22 2E-26 148.1 10.6 107 4-110 173-283 (320)
6 3rty_A Period circadian protei 99.9 8.4E-22 2.9E-26 148.3 11.3 106 5-110 152-264 (339)
7 4f3l_B BMAL1B; BHLH, PAS, circ 99.9 3.2E-22 1.1E-26 153.0 9.2 109 3-111 274-385 (387)
8 3gdi_A Period circadian protei 99.9 4.1E-21 1.4E-25 142.9 11.4 103 8-110 166-272 (309)
9 2kdk_A ARYL hydrocarbon recept 99.8 6.5E-20 2.2E-24 116.6 11.5 106 5-110 11-119 (121)
10 1oj5_A Steroid receptor coacti 99.8 5.4E-21 1.8E-25 124.5 5.7 109 5-114 5-119 (132)
11 3h9w_A Diguanylate cyclase wit 99.8 1.1E-19 3.7E-24 115.0 8.8 109 5-114 3-113 (115)
12 3mr0_A Sensory box histidine k 99.8 4.1E-19 1.4E-23 116.8 7.5 110 6-116 20-131 (142)
13 2vlg_A Sporulation kinase A; h 99.8 2.1E-18 7.1E-23 110.4 9.1 100 5-107 9-108 (111)
14 2gj3_A Nitrogen fixation regul 99.7 4.3E-17 1.5E-21 103.9 10.3 103 7-110 17-119 (120)
15 1n9l_A PHOT-LOV1, putative blu 99.7 5.2E-17 1.8E-21 102.4 10.3 104 5-109 3-109 (109)
16 3icy_A Sensor protein; sensory 99.7 6.8E-17 2.3E-21 101.3 10.7 101 7-108 16-118 (118)
17 3nja_A Probable ggdef family p 99.7 8.7E-17 3E-21 101.3 9.1 104 7-111 19-124 (125)
18 2vv6_A FIXL, sensor protein FI 99.7 3.2E-16 1.1E-20 99.5 10.0 110 6-118 4-117 (119)
19 4hia_A LOV protein; PAS, HTH, 99.7 2.7E-16 9.1E-21 106.0 9.3 109 7-116 19-130 (176)
20 2pr5_A Blue-light photorecepto 99.7 3.6E-16 1.2E-20 101.1 9.4 107 7-116 11-120 (132)
21 3t50_A Blue-light-activated hi 99.7 4.3E-16 1.5E-20 99.2 9.4 110 7-117 9-121 (128)
22 4eet_B Phototropin-2; LOV, blu 99.7 8E-16 2.7E-20 95.5 9.9 104 6-110 8-114 (115)
23 3ewk_A Sensor protein; PAS dom 99.7 1.6E-16 5.4E-21 112.2 7.5 116 8-124 2-117 (227)
24 3mqq_A Transcriptional regulat 99.6 7.4E-16 2.5E-20 97.8 7.6 106 6-113 13-119 (120)
25 3p7n_A Sensor histidine kinase 99.6 2.5E-15 8.4E-20 107.7 10.2 103 7-110 75-180 (258)
26 3ue6_A Aureochrome1; PAS/LOV d 99.6 1.1E-15 3.8E-20 101.4 7.7 107 7-114 47-156 (166)
27 2wkq_A NPH1-1, RAS-related C3 99.6 3.9E-15 1.3E-19 110.3 9.9 107 5-112 21-130 (332)
28 3eeh_A Putative light and redo 99.6 6.3E-15 2.2E-19 92.0 8.0 101 6-108 22-125 (125)
29 1d06_A Nitrogen fixation regul 99.6 1.6E-14 5.3E-19 93.1 9.9 99 7-108 28-130 (130)
30 3mjq_A Uncharacterized protein 99.6 2.2E-14 7.4E-19 90.5 9.5 110 7-120 11-120 (126)
31 3luq_A Sensor protein; PAS, hi 99.6 2.1E-14 7.1E-19 89.0 9.3 101 6-108 14-114 (114)
32 3lyx_A Sensory BOX/ggdef domai 99.6 4.5E-14 1.5E-18 87.5 10.6 105 6-111 18-122 (124)
33 3sw1_A Sensory box protein; li 99.5 1.1E-14 3.9E-19 96.2 7.2 108 6-114 36-146 (162)
34 3d72_A Vivid PAS protein VVD; 99.5 3.9E-14 1.3E-18 92.6 9.0 100 6-106 36-149 (149)
35 2z6d_A Phototropin-2; PAS-fold 99.5 1.2E-13 4E-18 86.2 10.5 107 7-114 18-127 (130)
36 2r78_A Sensor protein; sensory 99.5 3.3E-14 1.1E-18 90.3 7.0 95 7-108 23-117 (117)
37 2v0u_A NPH1-1, LOV2; kinase, t 99.5 1.6E-13 5.4E-18 87.5 9.9 105 7-112 14-121 (146)
38 1byw_A Protein (human ERG pota 99.5 2.3E-13 7.7E-18 82.6 10.0 103 7-110 3-110 (110)
39 3ewk_A Sensor protein; PAS dom 99.5 1.2E-13 4.1E-18 97.4 8.4 99 7-106 123-227 (227)
40 2l0w_A Potassium voltage-gated 99.4 1.3E-12 4.4E-17 82.6 10.3 104 5-109 29-137 (138)
41 4eho_A Bacteriophytochrome, PA 99.4 4.3E-14 1.5E-18 113.9 3.8 106 6-113 529-634 (635)
42 3mfx_A Sensory BOX/ggdef famil 99.4 1.1E-13 3.8E-18 90.4 4.8 100 5-108 17-123 (129)
43 3olo_A Two-component sensor hi 99.4 6.4E-13 2.2E-17 82.8 6.8 95 6-108 24-118 (118)
44 3mxq_A Sensor protein; PSI2, M 99.4 6.2E-13 2.1E-17 89.4 6.8 105 6-112 33-149 (152)
45 3k3c_A Protein RV1364C/MT1410; 99.4 8.6E-13 2.9E-17 87.0 6.6 106 7-115 29-140 (158)
46 1v9y_A Heme PAS sensor protein 99.4 1.1E-12 3.6E-17 86.4 7.0 112 6-120 51-166 (167)
47 1ll8_A PAS kinase; PAS domain, 99.4 2.8E-13 9.6E-18 85.1 3.9 99 7-108 10-113 (114)
48 3kx0_X Uncharacterized protein 99.4 5.1E-13 1.7E-17 91.3 5.4 107 7-116 49-161 (185)
49 3bwl_A Sensor protein; structu 99.3 4.6E-12 1.6E-16 80.3 8.2 96 7-108 29-126 (126)
50 3fc7_A HTR-like protein, senso 99.2 1E-11 3.4E-16 78.2 4.7 95 6-108 30-125 (125)
51 3fg8_A Uncharacterized protein 99.2 1E-11 3.6E-16 78.7 4.7 96 6-110 23-118 (118)
52 3b33_A Sensor protein; structu 99.2 5.6E-11 1.9E-15 74.2 6.2 97 6-108 18-115 (115)
53 3a0s_A Sensor protein; PAS-fol 99.0 1.2E-09 4.1E-14 64.3 7.9 93 6-105 3-95 (96)
54 2qkp_A Uncharacterized protein 99.0 1.3E-08 4.6E-13 67.9 13.4 105 7-116 31-139 (151)
55 4f3l_A Mclock, circadian locom 99.0 2.2E-09 7.5E-14 81.1 10.0 84 6-89 97-197 (361)
56 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 1.3E-09 4.4E-14 83.1 8.2 53 5-57 96-149 (387)
57 3cax_A Uncharacterized protein 98.8 1.2E-07 4.1E-12 71.8 13.1 107 7-120 251-357 (369)
58 3vol_A Aerotaxis transducer AE 98.8 3.7E-08 1.3E-12 69.9 9.0 97 6-114 33-142 (233)
59 4hi4_A Aerotaxis transducer AE 98.8 4.6E-08 1.6E-12 61.9 8.4 94 5-110 15-121 (121)
60 4dj3_A Period circadian protei 98.7 6.4E-08 2.2E-12 72.1 9.2 100 8-107 39-161 (317)
61 3rty_A Period circadian protei 98.7 3.6E-08 1.2E-12 74.0 7.4 50 8-57 6-56 (339)
62 3a0r_A Sensor protein; four he 98.7 9.5E-09 3.2E-13 76.0 4.0 104 5-115 18-121 (349)
63 3gdi_A Period circadian protei 98.7 8.3E-08 2.8E-12 71.2 8.0 83 7-89 27-130 (309)
64 1mzu_A PPR; photoactive yellow 98.6 9.6E-08 3.3E-12 62.1 7.1 89 8-100 35-125 (129)
65 1nwz_A PYP, photoactive yellow 98.6 7.5E-08 2.6E-12 62.4 6.2 83 7-92 29-113 (125)
66 2w0n_A Sensor protein DCUS; si 98.4 1.5E-08 5.1E-13 62.5 -1.0 90 6-108 26-118 (118)
67 4dj2_A Period circadian protei 98.3 1E-07 3.6E-12 71.0 1.3 82 8-89 39-141 (320)
68 2jhe_A Transcription regulator 98.2 3.2E-07 1.1E-11 62.2 0.7 92 6-110 91-188 (190)
69 2ykf_A Pdtas, probable sensor 96.8 8.5E-06 2.9E-10 60.2 0.0 100 7-114 182-290 (305)
70 2ool_A Sensor protein; bacteri 96.5 0.0036 1.2E-07 46.8 4.9 47 9-55 46-93 (337)
71 3clo_A Transcriptional regulat 92.5 1.8 6.3E-05 30.4 10.1 87 5-91 43-148 (258)
72 4e04_A Bacteriophytochrome (li 87.1 0.23 7.8E-06 36.9 1.5 46 8-53 32-77 (327)
73 3s7o_A Bacteriophytochrome; bi 84.4 0.44 1.5E-05 35.6 2.0 45 9-54 56-101 (343)
74 3zq5_A Phytochrome-like protei 62.3 2 7E-05 33.9 0.6 44 9-52 33-77 (520)
75 3nhq_A Bacteriophytochrome; ph 59.0 3.2 0.00011 32.6 1.2 42 9-52 30-72 (505)
76 2hje_A Autoinducer 2 sensor ki 26.0 30 0.001 24.1 1.6 44 40-83 34-77 (221)
77 3ub6_A Chemoreceptor TLPB; hom 25.7 1.4E+02 0.0049 19.5 7.9 74 32-111 87-160 (181)
78 1wi9_A Protein C20ORF116 homol 24.1 33 0.0011 19.4 1.3 16 8-23 52-67 (72)
No 1
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.89 E-value=3.7e-23 Score=131.43 Aligned_cols=109 Identities=34% Similarity=0.563 Sum_probs=96.8
Q ss_pred ccceEEE--EEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEE
Q psy10825 4 FKPVTFC--MSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIW 81 (140)
Q Consensus 4 ~~~~~~v--~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~w 81 (140)
++...++ .+.+|+++|+|++++.++||+++|++|+++.+++||+|.+.+...+..++..+.....++|+++++|+++|
T Consensus 6 l~~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w 85 (117)
T 3f1p_A 6 LDSKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVW 85 (117)
T ss_dssp TGGGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEEE
T ss_pred cCCccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEEE
Confidence 3444555 55677899999999999999999999999999999999999999999988888877779999999999999
Q ss_pred EEEEEEEEEecCCCCceEEEEEeEEccchhh
Q psy10825 82 LQTRFYITYHQWNSKPEFIVCTHRVVSYVNV 112 (140)
Q Consensus 82 v~~~~~~~~~~~~~~~~~iv~~~~~it~~~~ 112 (140)
++.++.++.++.++.+.+++|+.+|||+++.
T Consensus 86 ~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 86 LETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred EEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 9999999998767888999999999998653
No 2
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.89 E-value=1.3e-22 Score=129.68 Aligned_cols=107 Identities=25% Similarity=0.497 Sum_probs=93.5
Q ss_pred cceEEE--EEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHH-cCCcccEEeeeEecCCcEEE
Q psy10825 5 KPVTFC--MSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIW 81 (140)
Q Consensus 5 ~~~~~v--~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~-~g~~~~~e~r~~~~~G~~~w 81 (140)
|++.++ .+.+|+++|+|++++.++||+++|++|+++.+++||+|.+.+...+..++. .+.....++|+++++|+++|
T Consensus 10 ~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w 89 (121)
T 3f1p_B 10 QPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLW 89 (121)
T ss_dssp CCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEECTTSCEEE
T ss_pred CCCceEEEECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCCEEE
Confidence 344444 556778999999999999999999999999999999999999999988875 44567889999999999999
Q ss_pred EEEEEEEEEecCCCCceEEEEEeEEccchh
Q psy10825 82 LQTRFYITYHQWNSKPEFIVCTHRVVSYVN 111 (140)
Q Consensus 82 v~~~~~~~~~~~~~~~~~iv~~~~~it~~~ 111 (140)
++.++.++.++.++++.+++|+.+|||+.+
T Consensus 90 ~~~~~~~~~~~~~g~~~~iv~~~~DIT~~k 119 (121)
T 3f1p_B 90 MRTSSFTFQNPYSDEIEYIICTNTNVKNSS 119 (121)
T ss_dssp EEEEEEEECCTTCCCCCEEEEEEEECCCC-
T ss_pred EEEEEEEEECCCCCceeEEEEEeEEccccc
Confidence 999999999876788999999999999764
No 3
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.89 E-value=7e-23 Score=155.26 Aligned_cols=110 Identities=69% Similarity=1.246 Sum_probs=101.0
Q ss_pred cceEEEEEe--cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEE
Q psy10825 5 KPVTFCMSD--LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWL 82 (140)
Q Consensus 5 ~~~~~v~~~--d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv 82 (140)
+...|+.++ +|+++|+|+++..++||+++|++|+++++++||+|.+.+...+..++..|+....+||+++++|+|+|+
T Consensus 249 ~~~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv 328 (361)
T 4f3l_A 249 PNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWL 328 (361)
T ss_dssp SCCEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEE
T ss_pred CcceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEE
Confidence 456788776 567999999999999999999999999999999999999999999988888778889999999999999
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
++++.+++++++|++.+++|+++|||+++..+
T Consensus 329 ~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 329 QTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred EEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 99999999988899999999999999987654
No 4
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.87 E-value=3.4e-22 Score=149.17 Aligned_cols=106 Identities=25% Similarity=0.397 Sum_probs=96.9
Q ss_pred cceEEEEEe--cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc---ccEEeeeEecCCcE
Q psy10825 5 KPVTFCMSD--LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG---TSCYYRFLTKGQQW 79 (140)
Q Consensus 5 ~~~~~v~~~--d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~---~~~e~r~~~~~G~~ 79 (140)
+..+|+.++ ||+++|+|+++..++||.++||+|+++++++||+|++.+.+.++.+++.+.. ...+||++++||+|
T Consensus 172 ~~~~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 172 DKRIFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp GGCEEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred CCCceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 345899998 5679999999999999999999999999999999999999999999886554 46789999999999
Q ss_pred EEEEEEEEEEEecCCCCceEEEEEeEEccch
Q psy10825 80 IWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 80 ~wv~~~~~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
+|+++++.+++++++++++++||++++++..
T Consensus 252 vwvet~~~~~~np~s~~~e~II~~h~v~~~p 282 (317)
T 4dj3_A 252 VILDSSWSSFVNPWSRKVSFIIGRHKVRTSP 282 (317)
T ss_dssp EEEEEEEEEEECSSSCCEEEEEEEEEECCCC
T ss_pred EEEEEEEEEEECCCCCcccEEEEEEEeccCC
Confidence 9999999999999999999999999999964
No 5
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.87 E-value=5.9e-22 Score=148.08 Aligned_cols=107 Identities=22% Similarity=0.376 Sum_probs=97.6
Q ss_pred ccceEEEEEec--CCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHc-CCcc-cEEeeeEecCCcE
Q psy10825 4 FKPVTFCMSDL--MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQK-GEGT-SCYYRFLTKGQQW 79 (140)
Q Consensus 4 ~~~~~~v~~~d--~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~-g~~~-~~e~r~~~~~G~~ 79 (140)
.+..+|+.+++ |+++|+|+++..++||.++||+|+++++++||+|++.+.+.+..+++. |+.. ..+||++++||+|
T Consensus 173 ~~~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~ 252 (320)
T 4dj2_A 173 PDKRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEY 252 (320)
T ss_dssp GGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCE
T ss_pred CCCceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCE
Confidence 45678999884 569999999999999999999999999999999999999999999874 5555 5689999999999
Q ss_pred EEEEEEEEEEEecCCCCceEEEEEeEEccch
Q psy10825 80 IWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 80 ~wv~~~~~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
+|++++++++.++++++++++||++.+++..
T Consensus 253 vwvet~~~~~~np~s~~~e~II~~h~v~~gp 283 (320)
T 4dj2_A 253 VTMDTSWAGFVHPWSRKVAFVLGRHKVRTAP 283 (320)
T ss_dssp EEEECEEEEEECTTTCSEEEEEEEEEESSCC
T ss_pred EEEEEEEEEEECCCCCCccEEEEEEEEccCC
Confidence 9999999999999999999999999999964
No 6
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.87 E-value=8.4e-22 Score=148.30 Aligned_cols=106 Identities=32% Similarity=0.511 Sum_probs=96.8
Q ss_pred cceEEEEEe--cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc-----ccEEeeeEecCC
Q psy10825 5 KPVTFCMSD--LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG-----TSCYYRFLTKGQ 77 (140)
Q Consensus 5 ~~~~~v~~~--d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~-----~~~e~r~~~~~G 77 (140)
+..+|+.++ ||+++|+|+++..++||+++||+|+++++++||+|++.+.+.+..+++.|+. ...+||++++||
T Consensus 152 ~~~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG 231 (339)
T 3rty_A 152 KSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNG 231 (339)
T ss_dssp SCCEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTS
T ss_pred CCceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCC
Confidence 457788776 6679999999999999999999999999999999999999999999887775 256899999999
Q ss_pred cEEEEEEEEEEEEecCCCCceEEEEEeEEccch
Q psy10825 78 QWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 78 ~~~wv~~~~~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
+|+|+++++.++++++++++.++||++++++..
T Consensus 232 ~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p 264 (339)
T 3rty_A 232 CYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGP 264 (339)
T ss_dssp CEEEEEEEEEEEECTTTCSEEEEEEEEEEEECC
T ss_pred CEEEEEEEEEEEECCCCCCeeEEEEEEEECCCC
Confidence 999999999999999999999999999999964
No 7
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.87 E-value=3.2e-22 Score=152.96 Aligned_cols=109 Identities=32% Similarity=0.569 Sum_probs=96.5
Q ss_pred CccceEEEEEe--cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc-ccEEeeeEecCCcE
Q psy10825 3 GFKPVTFCMSD--LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG-TSCYYRFLTKGQQW 79 (140)
Q Consensus 3 ~~~~~~~v~~~--d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~-~~~e~r~~~~~G~~ 79 (140)
..++.+|+.++ +|+++|+|+++..++||+++||+|+++++++||+|.+.+.+.+..++..+.. ...+||++++||+|
T Consensus 274 ~~~~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~ 353 (387)
T 4f3l_B 274 RVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSF 353 (387)
T ss_dssp CBCCCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCE
T ss_pred ccCCceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCE
Confidence 34667788877 5579999999999999999999999999999999999999999998866544 57789999999999
Q ss_pred EEEEEEEEEEEecCCCCceEEEEEeEEccchh
Q psy10825 80 IWLQTRFYITYHQWNSKPEFIVCTHRVVSYVN 111 (140)
Q Consensus 80 ~wv~~~~~~~~~~~~~~~~~iv~~~~~it~~~ 111 (140)
+|+++++.++++++++++.+++|+++|||++.
T Consensus 354 vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk 385 (387)
T 4f3l_B 354 ITLRSRWFSFMNPWTKEVEYIVSTNTVVLANV 385 (387)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEECC---
T ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEEcchhh
Confidence 99999999999998899999999999999864
No 8
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.85 E-value=4.1e-21 Score=142.93 Aligned_cols=103 Identities=25% Similarity=0.362 Sum_probs=94.3
Q ss_pred EEEEEe--cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCC-ccc-EEeeeEecCCcEEEEE
Q psy10825 8 TFCMSD--LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGE-GTS-CYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 8 ~~v~~~--d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~-~~~-~e~r~~~~~G~~~wv~ 83 (140)
+|+.++ ||+++|+|+++..++||.++||+|+++++++||+|++.+.+.++.+++.+. ... .+||++++||+|+|++
T Consensus 166 ~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwve 245 (309)
T 3gdi_A 166 IFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLD 245 (309)
T ss_dssp EEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEEE
T ss_pred eEEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEEE
Confidence 688887 556999999999999999999999999999999999999999999987544 455 5899999999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccch
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
++++++.+++++++.++||++.+++..
T Consensus 246 t~~~~~~np~s~~~e~ii~~h~v~~gp 272 (309)
T 3gdi_A 246 TSWSSFINPWSRKISFIIGRHKVRVGP 272 (309)
T ss_dssp EEEEEEECTTTCCEEEEEEEEEEEECC
T ss_pred EEEEEEECCCCCcccEEEEEEEEccCC
Confidence 999999999999999999999999954
No 9
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.83 E-value=6.5e-20 Score=116.61 Aligned_cols=106 Identities=30% Similarity=0.466 Sum_probs=91.6
Q ss_pred cceEE--EEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCC-cccEEeeeEecCCcEEE
Q psy10825 5 KPVTF--CMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGE-GTSCYYRFLTKGQQWIW 81 (140)
Q Consensus 5 ~~~~~--v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~-~~~~e~r~~~~~G~~~w 81 (140)
+...+ +.+.+|+++|+|++++.++||++++++|+++.+++||+|.+.+...+...+..+. ....++|+++++|+++|
T Consensus 11 ~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~~ 90 (121)
T 2kdk_A 11 KPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDGSFVT 90 (121)
T ss_dssp CSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECSSSCEEE
T ss_pred CCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEcCCCEEE
Confidence 44444 4566788999999999999999999999999999999999988888887776534 45788999999999999
Q ss_pred EEEEEEEEEecCCCCceEEEEEeEEccch
Q psy10825 82 LQTRFYITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 82 v~~~~~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
++.++.+++++.++.+.+++++++||++.
T Consensus 91 ~~~~~~~~~d~~~~~~~~~v~~~~~i~~~ 119 (121)
T 2kdk_A 91 LKSQWFSFTNPDTKELEYIVSVNTLVLGH 119 (121)
T ss_dssp EEEEEEEEECCSSSCEEEEEEEEECCSSC
T ss_pred EEEEEEEEECCCCCeeeEEEEEEEecccc
Confidence 99999999987677889999999999875
No 10
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=99.83 E-value=5.4e-21 Score=124.54 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=90.6
Q ss_pred cceEEEEEecC--CEEEEcCCcccccCcCc--chhcCCCcceeeCccCHH--HHHHHHHHHHHcCCcccEEeeeEecCCc
Q psy10825 5 KPVTFCMSDLM--NSTIYDLVAPPIIGYLP--FEVLGTSGYDYYHVDDLD--SVVTCHEALMQKGEGTSCYYRFLTKGQQ 78 (140)
Q Consensus 5 ~~~~~v~~~d~--~i~~~n~a~~~~lGy~~--~el~g~~~~~~vhpdd~~--~~~~~~~~~~~~g~~~~~e~r~~~~~G~ 78 (140)
++.+|+.++++ +|++|+.++. ..+|.+ +||+|+++++++||+|.. .+.+.++.++..|+..+..|||+.++|.
T Consensus 5 ~~e~F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~ 83 (132)
T 1oj5_A 5 GVESFMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGT 83 (132)
T ss_dssp -CCEEEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSC
T ss_pred CceeeEEeecCCCcEEEEecccc-cccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCc
Confidence 67889999865 7999999765 366666 999999999999999976 8999999999888888888999999999
Q ss_pred EEEEEEEEEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 79 ~~wv~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
|+|+++.+.++++|+++++++||+++.++++..+..
T Consensus 84 ~V~~qT~sk~f~np~t~e~e~Ivs~n~v~r~~~~~~ 119 (132)
T 1oj5_A 84 MLSAHTRCKLCYPQSPDMQPFIMGIHIIDREHSGLS 119 (132)
T ss_dssp EEEEEEEEEEECC----CCCEEEEEEEEECC-----
T ss_pred EEEEEEEEEEecCCCCCCCCEEEEEEEEEcCCCCcc
Confidence 999999999999999999999999999999877654
No 11
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.81 E-value=1.1e-19 Score=115.01 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=93.8
Q ss_pred cceEEEEE-ecCCEEEEcCCcccccCcCcchhcCC-CcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEE
Q psy10825 5 KPVTFCMS-DLMNSTIYDLVAPPIIGYLPFEVLGT-SGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWL 82 (140)
Q Consensus 5 ~~~~~v~~-~d~~i~~~n~a~~~~lGy~~~el~g~-~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv 82 (140)
+...|..+ .++.++|+|++++.++||+++++.+. .+.+++||+|++.+...+...+..+.....++|+++++|+++|+
T Consensus 3 ~~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~ 82 (115)
T 3h9w_A 3 KAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHYVWI 82 (115)
T ss_dssp CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEE
T ss_pred ceEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCEEEE
Confidence 34456677 56678999999999999999999884 35789999999999999999988888788999999999999999
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
+.++.++++. +|++..++|+.+|||+.+..+
T Consensus 83 ~~~~~~~~d~-~G~~~~~~G~~~Dit~~k~~~ 113 (115)
T 3h9w_A 83 RDVVHVVRDD-SGEVEALIGFMFDISLEHHHH 113 (115)
T ss_dssp EEEEEEEECT-TSCEEEEEEEEEECGGGGC--
T ss_pred EEEEEEEECC-CCCEEEEEEEEeccCcccccc
Confidence 9999999885 688999999999999876544
No 12
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.78 E-value=4.1e-19 Score=116.83 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=94.0
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcC--CCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLG--TSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g--~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
...|..+.+++.+++|+++..++||+++++.+ ..+.+++||+|.+.+...+...+..+.....+||+++++|.++|+.
T Consensus 20 ~g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~e~r~~~~~G~~~w~~ 99 (142)
T 3mr0_A 20 AGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWIQ 99 (142)
T ss_dssp CEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEE
T ss_pred cEEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEEEEEEECCCCCEEEEE
Confidence 34566778888999999999999999999876 4578999999999999999998888888889999999999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchhhhhhc
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~~ 116 (140)
..+.++++. +|.+..++|+..|||+++..++.
T Consensus 100 ~~~~~~~d~-~g~~~~~~G~~~DITerk~~E~~ 131 (142)
T 3mr0_A 100 SRGQALWNS-AGEPYRMVGWIMDVTDRKRDEDA 131 (142)
T ss_dssp EEEEEEECT-TSCEEEEEEEEEECHHHHHHHHH
T ss_pred EEEEEEECC-CCCEEEEEEEEEcCchHHHHHHH
Confidence 999999885 67888999999999987655443
No 13
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.77 E-value=2.1e-18 Score=110.42 Aligned_cols=100 Identities=16% Similarity=0.246 Sum_probs=76.7
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEE
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~ 84 (140)
+...++++.+|+++|+|++++.++||+++|++|+++++++||+|.+.+.+.+. ..+.....++|++++||+++|++.
T Consensus 9 ~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~kdG~~~wve~ 85 (111)
T 2vlg_A 9 TDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKKDHTIVWVEA 85 (111)
T ss_dssp CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcCCCCEEEEEE
Confidence 34567778889999999999999999999999999999999999988765542 233345678999999999999999
Q ss_pred EEEEEEecCCCCceEEEEEeEEc
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVV 107 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~i 107 (140)
++.++.+..+++...+++-...+
T Consensus 86 ~~~~v~~~~~~~~r~~~~~~~~~ 108 (111)
T 2vlg_A 86 AVEIVTTRAERTEREIILKMKVL 108 (111)
T ss_dssp EEEEC-------CCCEEEEEEEC
T ss_pred EEEEEecccCCceEEEEEEEEEe
Confidence 99999887666666677655443
No 14
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.73 E-value=4.3e-17 Score=103.86 Aligned_cols=103 Identities=14% Similarity=-0.018 Sum_probs=87.3
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~ 86 (140)
..++++.+|+++|+|++++.++||+++|++|+++..+.++++.......+...+..+.....++++++++|+.+|+..+.
T Consensus 17 ~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~ 96 (120)
T 2gj3_A 17 AISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVNRRKDKTLYLAELTV 96 (120)
T ss_dssp EEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEE
T ss_pred eEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEEEEcCCCCEEEEEEEE
Confidence 45778889999999999999999999999999998888877665555555556666777777889999999999999999
Q ss_pred EEEEecCCCCceEEEEEeEEccch
Q psy10825 87 YITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 87 ~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
.++++. +|.+..++++.+|||++
T Consensus 97 ~pi~~~-~g~~~~~v~~~~DITe~ 119 (120)
T 2gj3_A 97 APVLNE-AGETIYYLGMHRDTSEL 119 (120)
T ss_dssp EEEECT-TSCEEEEEEEEEECCSC
T ss_pred EEEECC-CCCEEEEEEEeccCccc
Confidence 999875 57788899999999975
No 15
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.72 E-value=5.2e-17 Score=102.38 Aligned_cols=104 Identities=15% Similarity=0.006 Sum_probs=85.5
Q ss_pred cceEEEEE---ecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEE
Q psy10825 5 KPVTFCMS---DLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIW 81 (140)
Q Consensus 5 ~~~~~v~~---~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~w 81 (140)
....++++ .+++|+|+|++++.++||+++|++|+++..+.+|+........+...+..+.....+++.+++||+.+|
T Consensus 3 ~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~ 82 (109)
T 1n9l_A 3 RHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFW 82 (109)
T ss_dssp SCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEE
T ss_pred ccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEEE
Confidence 34456677 368999999999999999999999998777777765444445555666677777888999999999999
Q ss_pred EEEEEEEEEecCCCCceEEEEEeEEccc
Q psy10825 82 LQTRFYITYHQWNSKPEFIVCTHRVVSY 109 (140)
Q Consensus 82 v~~~~~~~~~~~~~~~~~iv~~~~~it~ 109 (140)
+..+..++++. +|++..++++..|||+
T Consensus 83 ~~~~~~pi~d~-~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 83 NLLTVTPIKTP-DGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEECT-TSCEEEEEEEEEECCC
T ss_pred EEEEEEEEECC-CCCEEEEEEEEEeCCC
Confidence 99999999985 6788889999999984
No 16
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.72 E-value=6.8e-17 Score=101.30 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=89.8
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCC--cceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTS--GYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~--~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~ 84 (140)
..|..+.+++++++|+++..++||+++++.+.. +.+++||+|.+.+.+.+..+...+.....++|+++++|+++|+..
T Consensus 16 ~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~~g~~~w~~~ 95 (118)
T 3icy_A 16 AIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLVYRIVTPEGKLHWIED 95 (118)
T ss_dssp CCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEEEEEECTTCCEEEEEE
T ss_pred eEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCEEEEEE
Confidence 346788889999999999999999999988764 578999999999999999988888888899999999999999999
Q ss_pred EEEEEEecCCCCceEEEEEeEEcc
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it 108 (140)
.+.++++. +|.+..++|+..|||
T Consensus 96 ~~~~~~~~-~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 96 HMRSSFSD-DGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEEECT-TSCEEEEEEEEEECC
T ss_pred EEEEEECC-CCCEEEEEEEEEecC
Confidence 99999885 577888899999986
No 17
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.70 E-value=8.7e-17 Score=101.29 Aligned_cols=104 Identities=13% Similarity=0.016 Sum_probs=92.3
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcC--CCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLG--TSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g--~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~ 84 (140)
..+..+.+++++++|+++..++||+++++.| ..+.+++||+|...+...+..++..+.....++++++++|.++|+..
T Consensus 19 ~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~ 98 (125)
T 3nja_A 19 GSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQVRELLE 98 (125)
T ss_dssp EEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEEEEEEECTTSCEEEEEE
T ss_pred eEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceEEEEEECCCCCEEEEEE
Confidence 4567888999999999999999999999998 66789999999999999999998888878889999999999999999
Q ss_pred EEEEEEecCCCCceEEEEEeEEccchh
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVSYVN 111 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it~~~ 111 (140)
++.++.+. +|.+..++|+..|||+++
T Consensus 99 ~~~~~~~~-~g~~~~~~g~~~DITe~k 124 (125)
T 3nja_A 99 RNHIQRQA-SGQVDHLWGTVIDMTEHK 124 (125)
T ss_dssp EEEEEECT-TSCEEEEEEEEEECCC--
T ss_pred eeEEEECC-CCCEEEEEEEEEeccccc
Confidence 99999885 577888999999999764
No 18
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.68 E-value=3.2e-16 Score=99.51 Aligned_cols=110 Identities=5% Similarity=-0.040 Sum_probs=79.8
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc----ccEEeeeEecCCcEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG----TSCYYRFLTKGQQWIW 81 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~----~~~e~r~~~~~G~~~w 81 (140)
...++++.+|.|+++|++++.++||+++|++|+++..++++++.......+......+.. ...+++.+++||+.+|
T Consensus 4 d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~ 83 (119)
T 2vv6_A 4 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTFP 83 (119)
T ss_dssp CEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCEEE
T ss_pred ceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCCCCEEE
Confidence 345778899999999999999999999999999998888877766555555555544442 2456788999999999
Q ss_pred EEEEEEEEEecCCCCceEEEEEeEEccchhhhhhccC
Q psy10825 82 LQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNN 118 (140)
Q Consensus 82 v~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~~~~ 118 (140)
++.+..++.+ ++ ...++++.+|||+++..++..+
T Consensus 84 ~~~~~~~~~~--~~-~~~~~~~~~DITerk~~e~~l~ 117 (119)
T 2vv6_A 84 MHLSIGEMQS--GG-EPYFTGFVRDLTEHQQTQARLQ 117 (119)
T ss_dssp EEEEEEEEEE--TT-EEEEEEEEEECC----------
T ss_pred EEEEEEEEEE--CC-eEEEEEEEEEcHHHHHHHHHHH
Confidence 9999988875 22 3468899999998877665443
No 19
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.67 E-value=2.7e-16 Score=106.00 Aligned_cols=109 Identities=7% Similarity=-0.047 Sum_probs=95.7
Q ss_pred eEEEEEec---CCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 7 VTFCMSDL---MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 7 ~~~v~~~d---~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
..++++.+ |+++++|++++.++||++++++|+++..+++|++.......+...+..+.....++++.+++|..+|+.
T Consensus 19 ~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~ 98 (176)
T 4hia_A 19 ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLRNYRANDEPFDNL 98 (176)
T ss_dssp CCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEE
T ss_pred cEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEEEEcCCCCEEEEE
Confidence 35678888 999999999999999999999999999999998888777888888878888888899999999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchhhhhhc
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~~ 116 (140)
.++.++.+. +|.+.+++++..|||+.+..++.
T Consensus 99 ~~~~pi~~~-~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 99 LFLHPVGGR-PDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp EEEEEESSB-TTBCSEEEEEEEEESSSGGGHHH
T ss_pred EEEEEeeCC-CCCeEEEEEEEEECcHhhHHHHH
Confidence 999999875 57788899999999988766554
No 20
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.67 E-value=3.6e-16 Score=101.09 Aligned_cols=107 Identities=10% Similarity=0.031 Sum_probs=86.3
Q ss_pred eEEEEEecC---CEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 7 VTFCMSDLM---NSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 7 ~~~v~~~d~---~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
..++++.+| +++|+|++++.++||+++|++|+++..+.+|++.......+...+..+.....+++++++||..+|+.
T Consensus 11 ~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~ 90 (132)
T 2pr5_A 11 GVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNE 90 (132)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEE
T ss_pred cEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEecCCCeeeeE
Confidence 345667665 89999999999999999999999988777777655545556666666777777889999999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchhhhhhc
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~~ 116 (140)
.+..++.+. + +.+++++.+|||+++..++.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~DITe~k~~e~~ 120 (132)
T 2pr5_A 91 LNIDPMEIE--D-KTYFVGIQNDITKQKEYEKL 120 (132)
T ss_dssp EEEEEEEET--T-EEEEEEEEEECHHHHHHHHH
T ss_pred EEEEeccCC--C-eeEEEEEEEeCcHHHHHHHH
Confidence 999999874 3 67889999999987655543
No 21
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.67 E-value=4.3e-16 Score=99.18 Aligned_cols=110 Identities=12% Similarity=0.013 Sum_probs=91.5
Q ss_pred eEEEEEe---cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 7 VTFCMSD---LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 7 ~~~v~~~---d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
..++++. +++++++|++++.++||++++++|+++.+++++++.......+...+..+.....++++.+++|..+|+.
T Consensus 9 ~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~ 88 (128)
T 3t50_A 9 PMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNR 88 (128)
T ss_dssp CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEE
T ss_pred cEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCCCCEEEEE
Confidence 4566777 7899999999999999999999999999999888877777777777777777778899999999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchhhhhhcc
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDN 117 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~~~ 117 (140)
.++.++.+. ++.+.+++++..|||+++..++..
T Consensus 89 ~~~~~i~~~-~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 89 LHISPVHNA-NGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp EEEEEEECT-TSCEEEEEEEEEECHHHHC-----
T ss_pred EEEEEEECC-CCCEEEEEEEEEEcchhhhhhhhh
Confidence 999999875 567788999999999886665543
No 22
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.66 E-value=8e-16 Score=95.46 Aligned_cols=104 Identities=11% Similarity=-0.032 Sum_probs=90.7
Q ss_pred ceEEEEEe---cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEE
Q psy10825 6 PVTFCMSD---LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWL 82 (140)
Q Consensus 6 ~~~~v~~~---d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv 82 (140)
...++++. +++++++|++++.++||++++++|+++..++++++.......+...+..+.....++++.+++|..+|+
T Consensus 8 ~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 87 (115)
T 4eet_B 8 KNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGKKFWN 87 (115)
T ss_dssp CSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEE
T ss_pred CcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCCCCEEEE
Confidence 34567888 899999999999999999999999999999998887777777777777777777789999999999999
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEccch
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
..+..++.+. ++.+.+++++..|||++
T Consensus 88 ~~~~~~~~~~-~g~~~~~~~~~~DITer 114 (115)
T 4eet_B 88 LLHLQPVRDQ-KGELQYFIGVQLDGSDH 114 (115)
T ss_dssp EEEEEEEECT-TSCEEEEEEEEEECSCC
T ss_pred EEEEEEEECC-CCCEEEEEEEEEeeccc
Confidence 9999999875 56778899999999974
No 23
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.66 E-value=1.6e-16 Score=112.22 Aligned_cols=116 Identities=8% Similarity=-0.047 Sum_probs=92.8
Q ss_pred EEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEEE
Q psy10825 8 TFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFY 87 (140)
Q Consensus 8 ~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~~ 87 (140)
.++++.+|+++++|++++.++||+++|++|+++..+.++.+.......+...+..+.....+++++++||..+|+..+..
T Consensus 2 i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~ 81 (227)
T 3ewk_A 2 VSITDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDSTIV 81 (227)
T ss_dssp EEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEEEEE
T ss_pred EEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeeeEEE
Confidence 46789999999999999999999999999999887776655444444444555677777888999999999999999999
Q ss_pred EEEecCCCCceEEEEEeEEccchhhhhhccCCCCccc
Q psy10825 88 ITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSE 124 (140)
Q Consensus 88 ~~~~~~~~~~~~iv~~~~~it~~~~~~~~~~q~~~~~ 124 (140)
++.+. +|++..++++..|||+++..++..+++...+
T Consensus 82 p~~d~-~g~~~~~~~~~~DIT~~k~~e~~l~~~~~~~ 117 (227)
T 3ewk_A 82 PLMDN-AGKPRQYISIRRDITAQKEAEAQLARLKQAM 117 (227)
T ss_dssp EEECS-SSCEEEEEEEEEECTTTTHHHHHHHHHHHHH
T ss_pred EEEcC-CCCEEEEEEEEEehhhHHHHHHHHHHHHHHH
Confidence 99985 6788899999999998766554444333333
No 24
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.63 E-value=7.4e-16 Score=97.82 Aligned_cols=106 Identities=12% Similarity=0.044 Sum_probs=79.7
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccC-HHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDD-LDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd-~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~ 84 (140)
|..++++.+++++++|++++.++||++++++|+++..++++++ ...+...+...+..+.....++++++++|..+|+..
T Consensus 13 ~~~i~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 92 (120)
T 3mqq_A 13 PIGLVLSRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHV 92 (120)
T ss_dssp SSEEEEEETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEEECTTSCEEEEEE
T ss_pred CceEEEecCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEEEeCCCCEEEEEE
Confidence 3444568899999999999999999999999999877665433 244445555555555667778999999999999999
Q ss_pred EEEEEEecCCCCceEEEEEeEEccchhhh
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVSYVNVL 113 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it~~~~~ 113 (140)
++.++ +. ++....++++..|||+++.+
T Consensus 93 ~~~~~-~~-~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 93 TGRAL-DR-TAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EEEES-ST-TSTTSSEEEEEEESCC----
T ss_pred EEEEC-CC-CCCceeEEEEEEcccHhhcc
Confidence 98887 33 44566788999999987543
No 25
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.62 E-value=2.5e-15 Score=107.75 Aligned_cols=103 Identities=7% Similarity=-0.091 Sum_probs=89.5
Q ss_pred eEEEEEe---cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 7 VTFCMSD---LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 7 ~~~v~~~---d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
..++++. +|+++++|++++.++||++++++|+++..+++|++.......+...+..+.....++++++++|..+|+.
T Consensus 75 ~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~ 154 (258)
T 3p7n_A 75 ASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNA 154 (258)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEE
T ss_pred cEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEe
Confidence 4577888 8889999999999999999999999999999998887777777777777787788899999999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccch
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
.++.++++. +|.+.+++++..|||+.
T Consensus 155 ~~~~pi~d~-~g~~~~~v~~~~DITer 180 (258)
T 3p7n_A 155 VLVAPIYDD-DDELLYFLGSQVEVDDD 180 (258)
T ss_dssp EEEEEEECT-TSCSEEEEEEEEEC---
T ss_pred eEEEEEEcC-CCCEEEEEEEeeecchh
Confidence 999999986 67788999999999987
No 26
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.62 E-value=1.1e-15 Score=101.35 Aligned_cols=107 Identities=12% Similarity=-0.091 Sum_probs=92.4
Q ss_pred eEEEEEe---cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 7 VTFCMSD---LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 7 ~~~v~~~---d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
..++++. +++++++|++++.++||++++++|+++..+++|++.......+...+..+.....++++.+++|..+|+.
T Consensus 47 ~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~ 126 (166)
T 3ue6_A 47 NFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNL 126 (166)
T ss_dssp CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEE
T ss_pred eEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEEEEEEcCCCCEEEEE
Confidence 4567777 7999999999999999999999999999999998877777777777777787778899999999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
.++.++.+. +|.+.+++++..|||++...+
T Consensus 127 ~~~~~i~~~-~g~~~~~~~~~~DITe~k~~~ 156 (166)
T 3ue6_A 127 FFVAGLRDS-KGNIVNYVGVQSKVSEDYAKL 156 (166)
T ss_dssp EEEEEEECT-TSCEEEEEEECCBCCHHHHHH
T ss_pred EEEEeeeCC-CCCEEEEEEEEEechHHHHHH
Confidence 999999885 577888999999999875443
No 27
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.60 E-value=3.9e-15 Score=110.26 Aligned_cols=107 Identities=8% Similarity=-0.054 Sum_probs=93.0
Q ss_pred cceEEEEEe---cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEE
Q psy10825 5 KPVTFCMSD---LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIW 81 (140)
Q Consensus 5 ~~~~~v~~~---d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~w 81 (140)
....+++|. +|+++++|++++.++||+++|++|+++.++++|++.......+...+..+.....++++++++|..+|
T Consensus 21 ~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~ 100 (332)
T 2wkq_A 21 EKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFW 100 (332)
T ss_dssp CSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEE
T ss_pred CCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCCCCEEE
Confidence 345677888 99999999999999999999999999999999887776677777777777777888999999999999
Q ss_pred EEEEEEEEEecCCCCceEEEEEeEEccchhh
Q psy10825 82 LQTRFYITYHQWNSKPEFIVCTHRVVSYVNV 112 (140)
Q Consensus 82 v~~~~~~~~~~~~~~~~~iv~~~~~it~~~~ 112 (140)
++.++.++++. +|.+.+++++..|+|++..
T Consensus 101 ~~~~~~pi~d~-~g~~~~~v~~~~DITe~k~ 130 (332)
T 2wkq_A 101 NLFHLQPMRDQ-KGDVQYFIGVQLDGTEHVR 130 (332)
T ss_dssp EEEEEEEEECT-TSCEEEEEEEEEEESSCCC
T ss_pred EeeEEEEeEcC-CCCEEEEEEEeccCchhhh
Confidence 99999999985 5778889999999997643
No 28
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.58 E-value=6.3e-15 Score=91.96 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=87.5
Q ss_pred ceEEEEEec-CCEEEEcCCcccccCcCcchhcCCC--cceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEE
Q psy10825 6 PVTFCMSDL-MNSTIYDLVAPPIIGYLPFEVLGTS--GYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWL 82 (140)
Q Consensus 6 ~~~~v~~~d-~~i~~~n~a~~~~lGy~~~el~g~~--~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv 82 (140)
...++++.+ ++++++|+++..++||+++++.|.. +.+++||++...+...+... ..+.....++++++++|..+|+
T Consensus 22 ~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~g~~~~~ 100 (125)
T 3eeh_A 22 DILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSL-MDGESADVECRVNATEEYQRWV 100 (125)
T ss_dssp CEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHH-HTTCCEEEEEEECGGGTTCEEE
T ss_pred ceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHH-HcCCCccEEEEEEcCCCCEEEE
Confidence 345778888 8999999999999999999999877 78899999999888888774 4666678889999999999999
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEcc
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~it 108 (140)
..++.++.+. +|.+..++++..|||
T Consensus 101 ~~~~~~~~~~-~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 101 WIQGEPITND-AGETVRVAGFARDIT 125 (125)
T ss_dssp EEEEEEEECT-TSCEEEEEEEEEECC
T ss_pred EEecEEEECC-CCCEEEEEEEEEecC
Confidence 9999999875 577788999999886
No 29
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.58 E-value=1.6e-14 Score=93.07 Aligned_cols=99 Identities=13% Similarity=-0.016 Sum_probs=78.9
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc----ccEEeeeEecCCcEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG----TSCYYRFLTKGQQWIWL 82 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~----~~~e~r~~~~~G~~~wv 82 (140)
..++++.+|.|+++|++++.++||+++|++|+++..+++|++.......+......+.. ...+++.+++||+.+|+
T Consensus 28 ~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~ 107 (130)
T 1d06_A 28 ATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPM 107 (130)
T ss_dssp EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEE
T ss_pred eEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCeeEEEEEeCCCCEEEE
Confidence 45678899999999999999999999999999999988887766555555555544432 24567889999999999
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEcc
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~it 108 (140)
+.+..++.+ ++ ...++++.+|||
T Consensus 108 ~~~~~~~~~--~~-~~~~~~~~~DIT 130 (130)
T 1d06_A 108 KLAVGEMRS--GG-ERFFTGFIRDLT 130 (130)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEEECC
T ss_pred EEEEEEEEE--CC-eEEEEEEEEECc
Confidence 999988875 22 346888888886
No 30
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.57 E-value=2.2e-14 Score=90.51 Aligned_cols=110 Identities=9% Similarity=-0.010 Sum_probs=83.8
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~ 86 (140)
..++++.+|+++++|++++.++||++++++|+++.+++++++...+...+......+.. ..++++.+++|..+|+..+.
T Consensus 11 ~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~ 89 (126)
T 3mjq_A 11 MILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKKEGTSIPAKARI 89 (126)
T ss_dssp EEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECTTSCEEEEEEEE
T ss_pred eEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEccCCCEEEEEEEE
Confidence 45678889999999999999999999999999999999999998888888887765554 67788999999999999988
Q ss_pred EEEEecCCCCceEEEEEeEEccchhhhhhccCCC
Q psy10825 87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQV 120 (140)
Q Consensus 87 ~~~~~~~~~~~~~iv~~~~~it~~~~~~~~~~q~ 120 (140)
.+... +....++++..|||++...++...+.
T Consensus 90 ~~~~~---~~~~~~~~~~~DITe~k~a~~~~~~~ 120 (126)
T 3mjq_A 90 WQGKW---HNEPCLFAIIKDLSKEERASSPPFLE 120 (126)
T ss_dssp EEEES---SSSEEEEEEEEECC------------
T ss_pred EeeeE---CCceEEEEEEEechHHHHhhcccchh
Confidence 76553 23567889999999887666554443
No 31
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.57 E-value=2.1e-14 Score=88.95 Aligned_cols=101 Identities=13% Similarity=0.030 Sum_probs=81.6
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~ 85 (140)
...++++.+++++++|++++.++||++++++|+++.+++ |++.+.+...+..+..++.....+.++.+++|..+|+..+
T Consensus 14 ~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (114)
T 3luq_A 14 AALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDCFVRADGRTQWLRWE 92 (114)
T ss_dssp SEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEEEEC--CCEEEEEEE
T ss_pred ceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeEEEcCCCcEEEEEEE
Confidence 345678899999999999999999999999999999887 7777777777777765433344445888999999999999
Q ss_pred EEEEEecCCCCceEEEEEeEEcc
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it 108 (140)
..++.+. +|.+.+++++..|||
T Consensus 93 ~~p~~~~-~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 93 VRPWYEG-EGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEEECT-TSCEEEEEEEEEECC
T ss_pred EEEeECC-CCCEEEEEEEEeeCC
Confidence 9999875 567788889988886
No 32
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.56 E-value=4.5e-14 Score=87.55 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=89.7
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~ 85 (140)
...++++.+++++++|+++..++|+++++++|+++..+.++++...+...+......+.....++++.+++|..+|+..+
T Consensus 18 ~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 97 (124)
T 3lyx_A 18 DAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIRMLHKDGHIGWIESM 97 (124)
T ss_dssp SEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEEEECTTSCEEEEEEE
T ss_pred ceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEEEEccCCCEEEEEEE
Confidence 34677888999999999999999999999999998866677777777777777777777777889999999999999999
Q ss_pred EEEEEecCCCCceEEEEEeEEccchh
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVSYVN 111 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it~~~ 111 (140)
..++.+. ++.+.+++++..|||+++
T Consensus 98 ~~~~~~~-~g~~~~~~~~~~Dit~~~ 122 (124)
T 3lyx_A 98 CVPIYGE-NYQMVGALGINRDITKRK 122 (124)
T ss_dssp EEEEECS-TTCEEEEEEEEEECSCC-
T ss_pred EEEEECC-CCCEEEEEEEEecchhhh
Confidence 9999875 567778899999999764
No 33
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.55 E-value=1.1e-14 Score=96.16 Aligned_cols=108 Identities=12% Similarity=-0.029 Sum_probs=92.7
Q ss_pred ceEEEEEecC---CEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEE
Q psy10825 6 PVTFCMSDLM---NSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWL 82 (140)
Q Consensus 6 ~~~~v~~~d~---~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv 82 (140)
...++++.++ +++++|++++.++||++++++|+.+.+++++++.......+...+..+.....++++.+++|..+|+
T Consensus 36 ~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 115 (162)
T 3sw1_A 36 DGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREVLRNYRKDGSAFWN 115 (162)
T ss_dssp SEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEE
T ss_pred CcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcceEEEECCCCCEEEE
Confidence 4567889999 9999999999999999999999999999988877666677777777777777889999999999999
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
..++.++.+. ++...+++++..|||+....+
T Consensus 116 ~~~~~~i~~~-~g~~~~~~~~~~DiTe~k~~e 146 (162)
T 3sw1_A 116 ELSITPVKSD-FDQRTYFIGIQKDVSRQVELE 146 (162)
T ss_dssp EEEEEEEECS-SSSCEEEEEEEEECHHHHHHH
T ss_pred EEEEEEeecC-CCCEEEEEEEEEeCcHHHHHH
Confidence 9999999875 567788999999999875544
No 34
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.54 E-value=3.9e-14 Score=92.57 Aligned_cols=100 Identities=9% Similarity=-0.042 Sum_probs=79.6
Q ss_pred ceEEEEE---ecCCEEEEcCCcccccCcCcchhcCCCcceeeCccC-----------HHHHHHHHHHHHHcCCcccEEee
Q psy10825 6 PVTFCMS---DLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDD-----------LDSVVTCHEALMQKGEGTSCYYR 71 (140)
Q Consensus 6 ~~~~v~~---~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd-----------~~~~~~~~~~~~~~g~~~~~e~r 71 (140)
...++++ .+|+++++|++++.++||++++++|+++..+++|++ .......+...+..+.....+++
T Consensus 36 ~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 115 (149)
T 3d72_A 36 VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVV 115 (149)
T ss_dssp SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCceEEEEE
Confidence 3445666 589999999999999999999999999998888873 44444455556666677777889
Q ss_pred eEecCCcEEEEEEEEEEEEecCCCCceEEEEEeEE
Q psy10825 72 FLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRV 106 (140)
Q Consensus 72 ~~~~~G~~~wv~~~~~~~~~~~~~~~~~iv~~~~~ 106 (140)
+++++|..+|+..+..++++. +|++..++++..|
T Consensus 116 ~~~~dG~~~~~~~~~~~i~~~-~g~~~~~v~~~~D 149 (149)
T 3d72_A 116 NFKKNGQRFVNFLTMIPVRDE-TGEYRYSMGFQCE 149 (149)
T ss_dssp EECTTCCEEEEEEEEEEEECT-TSSEEEEEEECCC
T ss_pred EECCCCCEEEEEEEEEEEEcC-CCCEEEEEEEEeC
Confidence 999999999999999999875 5667777776543
No 35
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.53 E-value=1.2e-13 Score=86.16 Aligned_cols=107 Identities=10% Similarity=-0.060 Sum_probs=88.4
Q ss_pred eEEEEE---ecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 7 VTFCMS---DLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 7 ~~~v~~---~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
..++++ .+++++++|+++..++||++++++|+++.++++|++.......+......+.....++++.+++|..+|+.
T Consensus 18 ~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 97 (130)
T 2z6d_A 18 TFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNL 97 (130)
T ss_dssp EEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEE
T ss_pred ceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcceeEEEEEcCCCcEEEEE
Confidence 445677 78999999999999999999999999999999988776666666666667777777788899999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
....++.+. ++.+.+++++..|+|+.+..+
T Consensus 98 ~~~~~~~~~-~g~~~~~~~~~~Dit~~~~~e 127 (130)
T 2z6d_A 98 LTVTPIKDD-QGNTIKFIGMQVEVSKYTEGV 127 (130)
T ss_dssp EEEEEEECT-TSCEEEEEEEEEECCTTC---
T ss_pred EEEEEEECC-CCCeeEEEEEEecchHHHHhh
Confidence 999999875 567778899999999876544
No 36
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.51 E-value=3.3e-14 Score=90.35 Aligned_cols=95 Identities=17% Similarity=0.003 Sum_probs=70.6
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~ 86 (140)
..++++.+|+++++|++++.++||+++|++|+++..+.++.+.......+... ..+.....+++++++||+.+|++.++
T Consensus 23 ~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~kdG~~~~v~~~~ 101 (117)
T 2r78_A 23 GIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARI-VGGEPLREERTVWTRNGDQLTVELSA 101 (117)
T ss_dssp EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHH-HTTCCEEEEEEEECTTSCEEEEEEEE
T ss_pred eEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHH-HcCCcEEEEEEEEecCCCEEEEEEEE
Confidence 45778889999999999999999999999999877665544433333333333 35555667889999999999999988
Q ss_pred EEEEecCCCCceEEEEEeEEcc
Q psy10825 87 YITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 87 ~~~~~~~~~~~~~iv~~~~~it 108 (140)
.++. +|. ++++.+|||
T Consensus 102 ~~~~---~g~---~~~i~~DIT 117 (117)
T 2r78_A 102 HLLP---DGK---ILGIARDVS 117 (117)
T ss_dssp EECT---TSC---EEEEEEC--
T ss_pred EEec---CCe---EEEEEEeCC
Confidence 7764 343 778888876
No 37
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.51 E-value=1.6e-13 Score=87.51 Aligned_cols=105 Identities=9% Similarity=-0.065 Sum_probs=90.6
Q ss_pred eEEEEEe---cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 7 VTFCMSD---LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 7 ~~~v~~~---d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
..++++. +++++++|+++..++||++++++|+++..+++|++...+...+...+..+.....++++.+++|..+|+.
T Consensus 14 ~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 93 (146)
T 2v0u_A 14 NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNL 93 (146)
T ss_dssp CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEE
T ss_pred cEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEecCCcEEEEE
Confidence 4566777 8999999999999999999999999999999998887777777777777777778889999999999999
Q ss_pred EEEEEEEecCCCCceEEEEEeEEccchhh
Q psy10825 84 TRFYITYHQWNSKPEFIVCTHRVVSYVNV 112 (140)
Q Consensus 84 ~~~~~~~~~~~~~~~~iv~~~~~it~~~~ 112 (140)
.+..++.+. ++.+.+++++..|||+...
T Consensus 94 ~~~~~~~~~-~g~~~~~~~~~~Dit~~~~ 121 (146)
T 2v0u_A 94 FHLQPMRDQ-KGDVQYFIGVQLDGTEHVR 121 (146)
T ss_dssp EEEEEEECT-TSCEEEEEEEEEEESSCCC
T ss_pred EEEEEeECC-CCCEEEEEEEEeechHHHH
Confidence 999999875 5677788999999997644
No 38
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.50 E-value=2.3e-13 Score=82.63 Aligned_cols=103 Identities=10% Similarity=-0.012 Sum_probs=80.6
Q ss_pred eEEEEEe---cCCEEEEcCCcccccCcCcchhcCCC-ccee-eCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEE
Q psy10825 7 VTFCMSD---LMNSTIYDLVAPPIIGYLPFEVLGTS-GYDY-YHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIW 81 (140)
Q Consensus 7 ~~~v~~~---d~~i~~~n~a~~~~lGy~~~el~g~~-~~~~-vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~w 81 (140)
..++++. +++++++|++++.++||++++++|++ +..+ .++++.......+......+.....++++.+++|..+|
T Consensus 3 ~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (110)
T 1byw_A 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFL 82 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEE
T ss_pred CEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEE
Confidence 3456665 58999999999999999999999998 2444 45555555555666666666767778888999999999
Q ss_pred EEEEEEEEEecCCCCceEEEEEeEEccch
Q psy10825 82 LQTRFYITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 82 v~~~~~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
+..+..++.+. ++.+..++++..|||++
T Consensus 83 ~~~~~~~~~~~-~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 83 CLVDVVPVKNE-DGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEECT-TCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEeecC-CCCEEEEEEEEEeccCC
Confidence 99999998875 56677888999999863
No 39
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.48 E-value=1.2e-13 Score=97.36 Aligned_cols=99 Identities=10% Similarity=-0.085 Sum_probs=84.7
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCc------EE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQ------WI 80 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~------~~ 80 (140)
..++.+.+|+++++|++++.++||+++|++|+++..+.+|++.+.....+...+..+.....+++.++++|. .+
T Consensus 123 ~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~ 202 (227)
T 3ewk_A 123 MILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDY 202 (227)
T ss_dssp EEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEE
T ss_pred eEEEEcCCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceE
Confidence 456788899999999999999999999999999999998887777777777777777877778888999986 89
Q ss_pred EEEEEEEEEEecCCCCceEEEEEeEE
Q psy10825 81 WLQTRFYITYHQWNSKPEFIVCTHRV 106 (140)
Q Consensus 81 wv~~~~~~~~~~~~~~~~~iv~~~~~ 106 (140)
|+..+..++++. +|.+..++++..|
T Consensus 203 ~~~~~~~pi~d~-~g~~~~~v~i~~D 227 (227)
T 3ewk_A 203 WAEISTTPIHTD-GNGLVGYVQIQHD 227 (227)
T ss_dssp EEEEEEEEEECS-SSCEEEEEEEEEC
T ss_pred EEEEEEEEEECC-CCCEEEEEEEecC
Confidence 999999999986 5777788887654
No 40
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.44 E-value=1.3e-12 Score=82.61 Aligned_cols=104 Identities=9% Similarity=-0.056 Sum_probs=83.4
Q ss_pred cceEEEEEe---cCCEEEEcCCcccccCcCcchhcCCC--cceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcE
Q psy10825 5 KPVTFCMSD---LMNSTIYDLVAPPIIGYLPFEVLGTS--GYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQW 79 (140)
Q Consensus 5 ~~~~~v~~~---d~~i~~~n~a~~~~lGy~~~el~g~~--~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~ 79 (140)
....++++. +++++++|+++..++||++++++|++ +..+.++++.......+...+..+.....++++.+++|..
T Consensus 29 ~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 108 (138)
T 2l0w_A 29 SRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIAFYRKDGSC 108 (138)
T ss_dssp TSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEEEECTTSCE
T ss_pred CCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEEEECCCCCE
Confidence 345567787 89999999999999999999999998 4455566666555566666666666667778889999999
Q ss_pred EEEEEEEEEEEecCCCCceEEEEEeEEccc
Q psy10825 80 IWLQTRFYITYHQWNSKPEFIVCTHRVVSY 109 (140)
Q Consensus 80 ~wv~~~~~~~~~~~~~~~~~iv~~~~~it~ 109 (140)
+|+..+..++.+. ++.+.+++++..|||+
T Consensus 109 ~~~~~~~~~~~~~-~g~~~~~~~~~~Dit~ 137 (138)
T 2l0w_A 109 FLCLVDVVPVKNE-DGAVIMFILNFEVVME 137 (138)
T ss_dssp EEEEEEEEEEECT-TSCEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEeCC-CCCEEEEEEEEEeccC
Confidence 9999999998875 5667788888899885
No 41
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.44 E-value=4.3e-14 Score=113.95 Aligned_cols=106 Identities=8% Similarity=-0.063 Sum_probs=93.1
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~ 85 (140)
...++++.+|+++++|+++++++||++++++|+.+...+||++.+.+...++.+. .|+....+++++++||+.+|+..+
T Consensus 529 ~~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l~-~g~~~~~E~~~~~~dG~~~~~~~~ 607 (635)
T 4eho_A 529 QPVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELID-HGRGWRGEVLLRGAGNRPLPLAVR 607 (635)
T ss_dssp SCCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHHH-HCCCBCCCCEECCSSSSCEECCCC
T ss_pred CcEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHHH-cCCcEEEEEEEEccCCcEEEEEEE
Confidence 4568889999999999999999999999999999999999999988877666554 566677789999999999999999
Q ss_pred EEEEEecCCCCceEEEEEeEEccchhhh
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVSYVNVL 113 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it~~~~~ 113 (140)
+.++++. +|++.+++++.+|||+++..
T Consensus 608 ~~pv~d~-~G~v~g~v~i~~DITerK~a 634 (635)
T 4eho_A 608 ADPVTRT-EDQSLGFVLIFSDATDRRTA 634 (635)
T ss_dssp EEEECST-TSSCCEEEECCCCCSSSCCC
T ss_pred EEEEECC-CCCEEEEEEEEEeCchHhhC
Confidence 9999986 67888999999999987654
No 42
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.43 E-value=1.1e-13 Score=90.37 Aligned_cols=100 Identities=4% Similarity=-0.074 Sum_probs=73.5
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCC----c---ccEEeeeEecCC
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGE----G---TSCYYRFLTKGQ 77 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~----~---~~~e~r~~~~~G 77 (140)
....+++|.+|+|+++|++++.++||++++++|+++.++++|++.......+......+. . ...+++++++||
T Consensus 17 ~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~rkdG 96 (129)
T 3mfx_A 17 TEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPAQETTLICASG 96 (129)
T ss_dssp SSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEEEEEEEEECTTS
T ss_pred CceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCCCceEEEEEcCCC
Confidence 345678899999999999999999999999999999999998876543333333222222 1 246889999999
Q ss_pred cEEEEEEEEEEEEecCCCCceEEEEEeEEcc
Q psy10825 78 QWIWLQTRFYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 78 ~~~wv~~~~~~~~~~~~~~~~~iv~~~~~it 108 (140)
+.+|++.+..++.+ +. ..++++.+|++
T Consensus 97 ~~~~velsis~i~~---~~-~~~v~~~~~~~ 123 (129)
T 3mfx_A 97 KAKDVELSISYIPG---HE-PMFVMVMHDLE 123 (129)
T ss_dssp CEEEEEEEEEEECS---SS-CEEEEEEEEC-
T ss_pred CEEEEEEEEEEecC---CC-cEEEEEEechh
Confidence 99999999988873 33 35667777765
No 43
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.40 E-value=6.4e-13 Score=82.82 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=72.5
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~ 85 (140)
...++++.+|+++++|++++.++||++++++|+++.++++++.... +..+. .+.....++++++++|..+|+..+
T Consensus 24 ~~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~~~-~~~~~~~e~~~~~~~g~~~~~~~~ 98 (118)
T 3olo_A 24 EASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEEIR-QKNNYTFKTRYRSQSGRIFLVEMS 98 (118)
T ss_dssp SEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHHHH-HHSEEEEEEEEECTTCCEEEEEEE
T ss_pred ceEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHHHH-hcCcEEEEEEEEccCCCEEEEEEE
Confidence 3457788899999999999999999999999999988875443322 22222 234556788899999999999999
Q ss_pred EEEEEecCCCCceEEEEEeEEcc
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it 108 (140)
..++... + ..+++++.+|||
T Consensus 99 ~~~~~~~--~-~~~~~~~~~DIT 118 (118)
T 3olo_A 99 LTFLEDQ--E-RRFSCVFVREKS 118 (118)
T ss_dssp EEEEEET--T-EEEEEEEEEEC-
T ss_pred EEEEEEC--C-ccEEEEEEEeCC
Confidence 9888763 3 346778888886
No 44
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.39 E-value=6.2e-13 Score=89.36 Aligned_cols=105 Identities=4% Similarity=-0.066 Sum_probs=82.2
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEee------------eE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYR------------FL 73 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r------------~~ 73 (140)
...+++|.+|+|+++|++++.++|+++++++|+++.+++++ +...+...+..++.+|.+.....+ -.
T Consensus 33 ~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~~~~~~~~~~~~~~~ 111 (152)
T 3mxq_A 33 FALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQKPHLLPFKSSRPV 111 (152)
T ss_dssp CEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEEECCSSSCSSCC------
T ss_pred CCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceeeecccccccccccccCCC
Confidence 34678999999999999999999999999999999999877 788888888999887775322111 12
Q ss_pred ecCCcEEEEEEEEEEEEecCCCCceEEEEEeEEccchhh
Q psy10825 74 TKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNV 112 (140)
Q Consensus 74 ~~~G~~~wv~~~~~~~~~~~~~~~~~iv~~~~~it~~~~ 112 (140)
.++|..+|...+..|+.++ +|++.+++.+..|+|+...
T Consensus 112 ~~~~~~~~~~~ti~Pl~d~-~G~v~gv~~ii~DVTe~~~ 149 (152)
T 3mxq_A 112 SGEEEQMYQNLEVIPIHSE-DGTIEHVCLCVYDVTIQAS 149 (152)
T ss_dssp ----CCEEEEEEEEEEECT-TSCEEEEEEEEEEEECC--
T ss_pred CCCCcEEEEEEEEEEEECC-CCCEEEEEEEEEECCHHHh
Confidence 3457788889999999986 6788889999999997654
No 45
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.38 E-value=8.6e-13 Score=87.03 Aligned_cols=106 Identities=10% Similarity=0.038 Sum_probs=84.4
Q ss_pred eEEEEE-ecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcc-cEEeee--EecC--CcEE
Q psy10825 7 VTFCMS-DLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-SCYYRF--LTKG--QQWI 80 (140)
Q Consensus 7 ~~~v~~-~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~-~~e~r~--~~~~--G~~~ 80 (140)
..++++ .+++++++|++++.++||+ +++|+++.+++++++...+...+..++..|++. ..++++ .+.+ |..+
T Consensus 29 ~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~ 106 (158)
T 3k3c_A 29 ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEER 106 (158)
T ss_dssp EEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEEEEEEESSSSCEEEE
T ss_pred eEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccccceeEEeccCCCCcceE
Confidence 456777 8899999999999999999 899999999999887776777888888777764 333333 3323 7789
Q ss_pred EEEEEEEEEEecCCCCceEEEEEeEEccchhhhhh
Q psy10825 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRR 115 (140)
Q Consensus 81 wv~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~ 115 (140)
|+..+..++.+. +|.+.+++++..|||++...++
T Consensus 107 ~~~~~~~pi~~~-~g~~~g~~~~~~DITe~k~~e~ 140 (158)
T 3k3c_A 107 YFDFVVTPRRRA-DGSIEGVQLIVDDVTSRVRARQ 140 (158)
T ss_dssp EEEEEEEEEECT-TSCEEEEEEEEEECHHHHHHHH
T ss_pred EEEEEEEEeECC-CCCEEEEEEEEEehhHHHHHHH
Confidence 999999999986 5778889999999998765443
No 46
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.38 E-value=1.1e-12 Score=86.45 Aligned_cols=112 Identities=14% Similarity=0.065 Sum_probs=75.8
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc----ccEEeeeEecCCcEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG----TSCYYRFLTKGQQWIW 81 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~----~~~e~r~~~~~G~~~w 81 (140)
...++++.++.++++|+++..++||++++++|+.+.+++++++.......+......+.. ...++++.+++|..+|
T Consensus 51 ~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 130 (167)
T 1v9y_A 51 MGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIW 130 (167)
T ss_dssp SEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CEEEEECTTSCEEE
T ss_pred CCEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccceEEEEEcCCCcEEE
Confidence 345677889999999999999999999999999999999888766666666666544433 3457888899999999
Q ss_pred EEEEEEEEEecCCCCceEEEEEeEEccchhhhhhccCCC
Q psy10825 82 LQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQV 120 (140)
Q Consensus 82 v~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~~~~q~ 120 (140)
+..+..++.. ++... ++++..|||+.+..++..+++
T Consensus 131 ~~~~~~~~~~--~g~~~-~~~~~~DiT~~~~~e~~l~~l 166 (167)
T 1v9y_A 131 TRFALSKVSA--EGKVY-YLALVRDASVEMAQKEQTRQL 166 (167)
T ss_dssp EEEEEEEEEE--TTEEE-EEEEEEC--------------
T ss_pred EEEEEEEEec--CCCEE-EEEEEecCcHHHHHHHHHHhh
Confidence 9999988843 45454 888999999887666554443
No 47
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.37 E-value=2.8e-13 Score=85.08 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=71.9
Q ss_pred eEEEEEec-CCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHH-cCCcc---cEEeeeEecCCcEEE
Q psy10825 7 VTFCMSDL-MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGT---SCYYRFLTKGQQWIW 81 (140)
Q Consensus 7 ~~~v~~~d-~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~-~g~~~---~~e~r~~~~~G~~~w 81 (140)
..++++.+ |+|+++|+++++++||+++|++|+++.++++|++............. .+... ..++++++++|+.+|
T Consensus 10 ~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~ 89 (114)
T 1ll8_A 10 AIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSGEKIP 89 (114)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTCCCEE
T ss_pred eEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEEEecCCCEEE
Confidence 56778888 99999999999999999999999999999998765543222111111 12211 334677899999999
Q ss_pred EEEEEEEEEecCCCCceEEEEEeEEcc
Q psy10825 82 LQTRFYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 82 v~~~~~~~~~~~~~~~~~iv~~~~~it 108 (140)
++.+..++.+. +. ..++++.++++
T Consensus 90 v~~~~~~~~~~--~~-~~~v~~~~~~~ 113 (114)
T 1ll8_A 90 VSVWMKRMRQE--RR-LCCVVVLEPVE 113 (114)
T ss_dssp EECCEECCBSS--SS-BEEEEEEEECC
T ss_pred EEEEEEeeccC--Cc-cEEEEEEeecC
Confidence 99998887652 33 46677777765
No 48
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.37 E-value=5.1e-13 Score=91.25 Aligned_cols=107 Identities=11% Similarity=0.043 Sum_probs=81.5
Q ss_pred eEEEEE-ecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCccc-EEeee--EecC--CcEE
Q psy10825 7 VTFCMS-DLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTS-CYYRF--LTKG--QQWI 80 (140)
Q Consensus 7 ~~~v~~-~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~-~e~r~--~~~~--G~~~ 80 (140)
..++++ .+++++++|++++.++||+ +++|+++.+++++++...+...+..++..|+... .++++ ..++ |..+
T Consensus 49 ~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gg~~~ 126 (185)
T 3kx0_X 49 ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEER 126 (185)
T ss_dssp EEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEEEEEC--------CCE
T ss_pred eEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccccceeEEeeccCCCCccE
Confidence 456777 8999999999999999999 9999999999988776556667777777777643 22333 3333 7789
Q ss_pred EEEEEEEEEEecCCCCceEEEEEeEEccchhhhhhc
Q psy10825 81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116 (140)
Q Consensus 81 wv~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~~ 116 (140)
|+..+..++.+. +|.+..++++..|||++...++.
T Consensus 127 ~~~~~~~pi~~~-~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 127 YFDFVVTPRRRA-DGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp EEEEEEEEEECT-TSCEEEEEEEEEECHHHHTTCC-
T ss_pred EEEEEEEEEECC-CCCEEEEEEEEEeCCHHHHHHHH
Confidence 999999999885 57788899999999987665544
No 49
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.34 E-value=4.6e-12 Score=80.32 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=67.7
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchh--cCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEV--LGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el--~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~ 84 (140)
..++++.+|+++++|++++.++||+++++ +|+++.+++| +...+...+.... .+.....++++++++|..+|+..
T Consensus 29 ~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~e~~~~~~dG~~~~~~~ 105 (126)
T 3bwl_A 29 MIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFS-VDERRKFEGLYERRDGSTMSVEV 105 (126)
T ss_dssp EEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCC-TTCEEEEEEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHh-cCCCcceEEEEEeCCCCEEEEEE
Confidence 45677889999999999999999999999 5677778776 4443333222211 23334556788899999999998
Q ss_pred EEEEEEecCCCCceEEEEEeEEcc
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it 108 (140)
+..+... ++.. .++++.+|||
T Consensus 106 ~~~~~~~--~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 106 HLLRFNL--EGED-RFLAISRDIT 126 (126)
T ss_dssp EEEEEEE--TTEE-EEEEEEEEC-
T ss_pred EeEEEec--CCcE-EEEEEEEeCC
Confidence 7766643 3433 5678888886
No 50
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.22 E-value=1e-11 Score=78.17 Aligned_cols=95 Identities=7% Similarity=0.035 Sum_probs=70.3
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCc-EEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQ-WIWLQT 84 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~-~~wv~~ 84 (140)
...++++.+|+++++|++++.++||++++++|+++.++++++....+..........+... ..++|. .+|+..
T Consensus 30 ~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 103 (125)
T 3fc7_A 30 DGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT------RSEDAVGGRHYHN 103 (125)
T ss_dssp CEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE------EEEEEETTEEEEE
T ss_pred CeEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE------EeEcCCCcEEEEE
Confidence 3467788999999999999999999999999999999985554444444445555555533 223444 678888
Q ss_pred EEEEEEecCCCCceEEEEEeEEcc
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it 108 (140)
+..++.+ ++....++++.+|||
T Consensus 104 ~~~p~~~--~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 104 QYIPVDS--HRKSDTFQLVSRDIT 125 (125)
T ss_dssp EEEESST--TTTTTEEEEEEEECC
T ss_pred EEEeEec--CCCeEEEEEEEecCC
Confidence 8888765 345567788888886
No 51
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.22 E-value=1e-11 Score=78.68 Aligned_cols=96 Identities=8% Similarity=-0.056 Sum_probs=73.1
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~ 85 (140)
...++++.+|+++++|++++.++||++++++|+++.+++++++...+...+..++.+|+....++.....+| .|+..+
T Consensus 23 ~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~ 100 (118)
T 3fg8_A 23 LGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTRVDSLYSPG--MTIEVT 100 (118)
T ss_dssp CEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEEEECSSSTT--CEEEEE
T ss_pred ceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEEEEEEcCCC--eEEEEE
Confidence 345778899999999999999999999999999999998877666677778888877877665333333366 466666
Q ss_pred EEEEEecCCCCceEEEEEeEEccch
Q psy10825 86 FYITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
..+..+ .++++.+|||++
T Consensus 101 ~~p~~~-------g~v~~~~DITer 118 (118)
T 3fg8_A 101 AAADSG-------ALVVHFRDVTAE 118 (118)
T ss_dssp EEEETT-------EEEEEEEECSCC
T ss_pred EEEcCC-------cEEEEEEeccCC
Confidence 665432 278888999864
No 52
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.17 E-value=5.6e-11 Score=74.15 Aligned_cols=97 Identities=11% Similarity=0.090 Sum_probs=71.5
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCc-ccEEeeeEecCCcEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG-TSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~-~~~e~r~~~~~G~~~wv~~ 84 (140)
...++++.+|+|+++|++++.++|+++++++|+++.+++++++. +...+..++..+.. ...++++. ++|..+|+..
T Consensus 18 ~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 94 (115)
T 3b33_A 18 TATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTFV-VDGRPLMLEV 94 (115)
T ss_dssp SEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEEE-ETTEEEEEEE
T ss_pred ceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEEe-cCCCEEEEEE
Confidence 34577889999999999999999999999999999888765431 12334445555554 34566666 7899999999
Q ss_pred EEEEEEecCCCCceEEEEEeEEcc
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it 108 (140)
+..++.+ ++. .+++.+..|++
T Consensus 95 ~~~pi~~--~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 95 TVSPITW--QRQ-LMLLVEMRKID 115 (115)
T ss_dssp EEEEEEE--TTE-EEEEEEEEEC-
T ss_pred EEEEeec--CCc-eEEEEEEEeCC
Confidence 9999887 343 46677777763
No 53
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.04 E-value=1.2e-09 Score=64.35 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=63.2
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~ 85 (140)
...++++.+++++++|++++.++||++++++|+++.++ |++.. +...+......+... +++.. +|..+|+..+
T Consensus 3 ~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~~~-~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~ 75 (96)
T 3a0s_A 3 TAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDFEE-IGSVAESVFENKEPV--FLNFY--KFGERYFNIR 75 (96)
T ss_dssp CEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTCHH-HHHHHHHHHHHTCCE--EEEEE--EETTEEEEEE
T ss_pred ceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cchHH-HHHHHHHHhccCCeE--EEEEE--cCCcEEEEEE
Confidence 34578899999999999999999999999999998887 44433 333444444444433 23322 3444688888
Q ss_pred EEEEEecCCCCceEEEEEeE
Q psy10825 86 FYITYHQWNSKPEFIVCTHR 105 (140)
Q Consensus 86 ~~~~~~~~~~~~~~iv~~~~ 105 (140)
..++.+..++.+..++++.+
T Consensus 76 ~~p~~~~~~~~~~g~v~~~~ 95 (96)
T 3a0s_A 76 FSPFRNAKTQLLEGVIITID 95 (96)
T ss_dssp EEEEECTTTCCEEEEEEEEE
T ss_pred EEEeEcCCCCeeeEEEEEec
Confidence 98988753333455666554
No 54
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.03 E-value=1.3e-08 Score=67.91 Aligned_cols=105 Identities=9% Similarity=-0.044 Sum_probs=74.3
Q ss_pred eEEEEEecCCEEEEcCC---cccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecC-CcEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLV---APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKG-QQWIWL 82 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a---~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~-G~~~wv 82 (140)
..+++|.+++++|+|++ ++.++| .+++++|+++.++.+|. .......+...+++|+....++.+...+ | .++
T Consensus 31 gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~~~~~~~~~~~~--~~v 106 (151)
T 2qkp_A 31 EITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDKVNMWFQSERLG--KFV 106 (151)
T ss_dssp EEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSEEEEEEEETTTT--EEE
T ss_pred ceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccEEEEEEecCCCC--eEE
Confidence 45789999999999999 999999 56789999998865433 3222233344455677655555543332 4 456
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEccchhhhhhc
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~~ 116 (140)
..+..|+++. +|+..+++.+..|+|+...+++.
T Consensus 107 ~v~~~Pi~d~-~G~~~G~vev~~Dit~l~~le~~ 139 (151)
T 2qkp_A 107 YVTYAAVRDQ-AGDFQGVLEYVQDIKPFFELDSE 139 (151)
T ss_dssp EEEEEEEECT-TCCEEEEEEEEEECGGGGGGGGC
T ss_pred EEEEEEEECC-CCCEEEEEEEEEECHHHHhhhhh
Confidence 7788899975 57777888899999987666543
No 55
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.01 E-value=2.2e-09 Score=81.10 Aligned_cols=84 Identities=6% Similarity=0.059 Sum_probs=62.8
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCC-----------cccEEeeeEe
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGE-----------GTSCYYRFLT 74 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~-----------~~~~e~r~~~ 74 (140)
...++++.+|+|+|+|+++..++||+++|++|+++++++||+|++.+...+......+. ...+..|+++
T Consensus 97 ~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~cr~~~ 176 (361)
T 4f3l_A 97 GFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKNQLEFCCHMLR 176 (361)
T ss_dssp EEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHHCCCCCCSSSCGGGCGGGEEEEEEEEEC
T ss_pred ceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhccCCCCCCCCCcccccccCceeEEEEEec
Confidence 34678899999999999999999999999999999999999999988887765432111 1123344433
Q ss_pred c------CCcEEEEEEEEEEE
Q psy10825 75 K------GQQWIWLQTRFYIT 89 (140)
Q Consensus 75 ~------~G~~~wv~~~~~~~ 89 (140)
. .+.|.++...+...
T Consensus 177 ~~~~~~~~~~y~~i~~~G~~~ 197 (361)
T 4f3l_A 177 GTIDPKEPSTYEYVRFIGNFK 197 (361)
T ss_dssp CCSCSSSCCCEEEEEEEEEEE
T ss_pred cCCCCCCCCceEEEEEEEEEE
Confidence 2 24677777776655
No 56
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.99 E-value=1.3e-09 Score=83.14 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=46.8
Q ss_pred cceEEEEEec-CCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHH
Q psy10825 5 KPVTFCMSDL-MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHE 57 (140)
Q Consensus 5 ~~~~~v~~~d-~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~ 57 (140)
+.-.++++.+ |+|+|+|+++..+|||+++|++|+++++++||+|++.+.+.+.
T Consensus 96 ~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L~ 149 (387)
T 4f3l_B 96 DGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLS 149 (387)
T ss_dssp CSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHS
T ss_pred CCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHhc
Confidence 3445677777 9999999999999999999999999999999999998887663
No 57
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.81 E-value=1.2e-07 Score=71.84 Aligned_cols=107 Identities=6% Similarity=-0.021 Sum_probs=78.8
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~ 86 (140)
..+++|.+|+|+++|++ +.++ +.+++++|+++.+++++.....+ ..+...+++|.....++.+. .+| +|+..+.
T Consensus 251 gIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~~~~-~~l~~~l~~g~~~~~~~~~~-~~g--~~v~v~~ 324 (369)
T 3cax_A 251 DVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSVYVV-NKILKAFKEGRKKEATFWLR-LRE--KYVYIKY 324 (369)
T ss_dssp EEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGHHHH-HHHHHHHHHTSCSCEEEEEE-ETT--EEEEEEE
T ss_pred cEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhHHHH-HHHHHHHHcCCceEEEEEEe-eCC--EEEEEEE
Confidence 45788999999999999 9999 99999999999987665444333 33444555676654545443 456 5778888
Q ss_pred EEEEecCCCCceEEEEEeEEccchhhhhhccCCC
Q psy10825 87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQV 120 (140)
Q Consensus 87 ~~~~~~~~~~~~~iv~~~~~it~~~~~~~~~~q~ 120 (140)
.++++. +|+..+++.+.+|+|+...+++..+.+
T Consensus 325 ~PI~d~-~G~~~G~v~v~~DITe~~~le~~rr~~ 357 (369)
T 3cax_A 325 VPLFNE-KGEYIGTLEMTMDIAPYKKIEGEKRLL 357 (369)
T ss_dssp EEEECT-TSCEEEEEEEEEECHHHHTCCSCCCSC
T ss_pred EEEECC-CCCEEEEEEEEEcCHHHHHHHHHhHHH
Confidence 899975 577888999999999887766554433
No 58
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.78 E-value=3.7e-08 Score=69.92 Aligned_cols=97 Identities=4% Similarity=-0.036 Sum_probs=68.4
Q ss_pred ceEEEEEecCCEEEEcCCccccc------------CcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCC-cccEEeee
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPII------------GYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGE-GTSCYYRF 72 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~l------------Gy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~-~~~~e~r~ 72 (140)
...+++|.+|+|+|+|++++.++ ||++++++|+++.+++... ... ..++.... ....+++
T Consensus 33 ~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~- 105 (233)
T 3vol_A 33 ANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP--AHQ----RHLLANLTGVHKAELN- 105 (233)
T ss_dssp SEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSSH--HHH----HHHHHTCCSCEEEEEE-
T ss_pred CcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCCH--HHH----HHHHHhcccceeEEEE-
Confidence 45678899999999999999988 8999999999988776431 111 12222211 2222232
Q ss_pred EecCCcEEEEEEEEEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 73 LTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 73 ~~~~G~~~wv~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
.+|. |+..+..|+++. +|++.+++++..|+|+....+
T Consensus 106 --~~g~--~~~~~~~Pi~d~-~G~~~g~v~~~~DITe~~~~e 142 (233)
T 3vol_A 106 --LGGR--RFSLDVVPVFND-ANERLGSAVQWTDRTEEHRAE 142 (233)
T ss_dssp --ETTE--EEEEEEEEEECT-TCCEEEEEEEEEECHHHHHHH
T ss_pred --ECCE--EEEEEEEEEECC-CCCEEEEEEEEehhhHHHHHH
Confidence 3453 678889999985 578888999999999875544
No 59
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.77 E-value=4.6e-08 Score=61.89 Aligned_cols=94 Identities=5% Similarity=-0.015 Sum_probs=63.7
Q ss_pred cceEEEEEecCCEEEEcCCcccccC------------cCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCC-cccEEee
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIG------------YLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGE-GTSCYYR 71 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lG------------y~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~-~~~~e~r 71 (140)
....+++|.+|+|+++|++++.++| |++++++|+++.++++.. ... ..++.... ....+++
T Consensus 15 ~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~ 88 (121)
T 4hi4_A 15 SANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP--AHQ----RHLLANLTGVHKAELN 88 (121)
T ss_dssp SSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSH--HHH----HHHHHHCSSCEEEEEE
T ss_pred CccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCH--HHH----HHHHhCcCCCcEEEEE
Confidence 3456788999999999999999996 899999999988876432 111 12222222 2223332
Q ss_pred eEecCCcEEEEEEEEEEEEecCCCCceEEEEEeEEccch
Q psy10825 72 FLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110 (140)
Q Consensus 72 ~~~~~G~~~wv~~~~~~~~~~~~~~~~~iv~~~~~it~~ 110 (140)
.+|. |+..+..|+++. +|+..+++++.+|+|++
T Consensus 89 ---~~~~--~~~~~~~pi~~~-~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 89 ---LGGR--RFSLDVVPVFND-ANARLGSAVQWTDRTEE 121 (121)
T ss_dssp ---ETTE--EEEEEEEEEECT-TSCEEEEEEEEEECC--
T ss_pred ---ECCE--EEEEEEEEEECC-CCCEEEEEEEEEEecCC
Confidence 2454 557788899875 56777888999999864
No 60
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.72 E-value=6.4e-08 Score=72.07 Aligned_cols=100 Identities=10% Similarity=0.031 Sum_probs=69.2
Q ss_pred EEEEEec-CCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHH--------------HHcCCcccEEeee
Q psy10825 8 TFCMSDL-MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEAL--------------MQKGEGTSCYYRF 72 (140)
Q Consensus 8 ~~v~~~d-~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~--------------~~~g~~~~~e~r~ 72 (140)
.+|+..+ |+|+|+++++..+|||+++|++|+++++++||+|+..+.+.+... ...+...++..|+
T Consensus 39 ~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f~~ql~~~~lP~~~~~~~~~~~~~~~~~rsF~CRm 118 (317)
T 4dj3_A 39 AAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAHTAPTQLPFWNNWTQRASQYECAPAKPFFCRI 118 (317)
T ss_dssp EEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHHHHHTCTTTCCCCC----------CCCCCCEEEEE
T ss_pred EEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHHHHhhcccCCCCcCCCcccccccCCCCCceEEEEE
Confidence 4567765 999999999999999999999999999999999999887654110 0112234566788
Q ss_pred EecCC----cEEEEEEEEEEEEecC----CCCceEEEEEeEEc
Q psy10825 73 LTKGQ----QWIWLQTRFYITYHQW----NSKPEFIVCTHRVV 107 (140)
Q Consensus 73 ~~~~G----~~~wv~~~~~~~~~~~----~~~~~~iv~~~~~i 107 (140)
++.-+ .|.++.+.++...-.. ++...+++++....
T Consensus 119 r~g~~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~ 161 (317)
T 4dj3_A 119 CGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIH 161 (317)
T ss_dssp CCCCCSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECC
T ss_pred eCCCCCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecC
Confidence 76443 6778888887654221 12334566654443
No 61
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.71 E-value=3.6e-08 Score=74.03 Aligned_cols=50 Identities=18% Similarity=0.111 Sum_probs=44.7
Q ss_pred EEEEE-ecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHH
Q psy10825 8 TFCMS-DLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHE 57 (140)
Q Consensus 8 ~~v~~-~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~ 57 (140)
.+|+. .+|+|+|+|+++..++||+++|++|+++++++||+|+..+.+.+.
T Consensus 6 ~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~L~ 56 (339)
T 3rty_A 6 CCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQIT 56 (339)
T ss_dssp EEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHHHH
T ss_pred EEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHHHh
Confidence 46677 599999999999999999999999999999999999987666554
No 62
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.70 E-value=9.5e-09 Score=76.00 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=72.4
Q ss_pred cceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEE
Q psy10825 5 KPVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 5 ~~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~ 84 (140)
....++++.+|+++++|++++.++||++++++|+++.++.++++. ..........+....... ..+..+|+..
T Consensus 18 ~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 90 (349)
T 3a0r_A 18 ETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEI---GSVAESVFENKEPVFLNF----YKFGERYFNI 90 (349)
T ss_dssp SSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTHH---HHHHHHHHHHCCCCEEEC----CCBTTBCCEE
T ss_pred cCeEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChhHH---HHHHHHHHhcCCceeecc----cccCceEEEE
Confidence 345678899999999999999999999999999999888554433 233444554554432221 1123357778
Q ss_pred EEEEEEecCCCCceEEEEEeEEccchhhhhh
Q psy10825 85 RFYITYHQWNSKPEFIVCTHRVVSYVNVLRR 115 (140)
Q Consensus 85 ~~~~~~~~~~~~~~~iv~~~~~it~~~~~~~ 115 (140)
+..++.+..++...+++++.+|+|+....++
T Consensus 91 ~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~ 121 (349)
T 3a0r_A 91 RFSPFRNAKTQLLEGVIITIDDVTELYKYEE 121 (349)
T ss_dssp EEEEECCTTTTSSCEEEEEEECCSTTTTTTT
T ss_pred EEEEEEcCCCceeeEEEEEEEechHHHHHHH
Confidence 8888887544444688899999998755443
No 63
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.65 E-value=8.3e-08 Score=71.21 Aligned_cols=83 Identities=10% Similarity=0.061 Sum_probs=54.2
Q ss_pred eEEEEEec-CCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHH-H-----HcC---------CcccEEe
Q psy10825 7 VTFCMSDL-MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEAL-M-----QKG---------EGTSCYY 70 (140)
Q Consensus 7 ~~~v~~~d-~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~-~-----~~g---------~~~~~e~ 70 (140)
-.+++..+ |+|+|+++++..+|||+++|++|+++++++||+|+..+.+.+... + ..+ ...++..
T Consensus 27 F~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L~~~~lp~~~~~~~~~~~~~~~~~~rsF~C 106 (309)
T 3gdi_A 27 FAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQECMEEKSFFC 106 (309)
T ss_dssp EEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHTCTTSSCBCC--------------CCCEEE
T ss_pred EEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhccccCCCCcccccCccccccccCCceeEEE
Confidence 34567765 999999999999999999999999999999999999887765210 0 001 1245667
Q ss_pred eeEec-----CCcEEEEEEEEEEE
Q psy10825 71 RFLTK-----GQQWIWLQTRFYIT 89 (140)
Q Consensus 71 r~~~~-----~G~~~wv~~~~~~~ 89 (140)
|+++. ...|.++.++++..
T Consensus 107 Rmr~~~~~~~~~~Y~~~~~~g~lk 130 (309)
T 3gdi_A 107 RVSVGKHHENEIRYQPFRMTPYLV 130 (309)
T ss_dssp EECCCC----CCCCEEEEEEEEEE
T ss_pred EEEccccCCCccceEEEEEEeeec
Confidence 87754 23677788887754
No 64
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.65 E-value=9.6e-08 Score=62.15 Aligned_cols=89 Identities=10% Similarity=0.047 Sum_probs=64.0
Q ss_pred EEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccC-HHHHHHHHHHHHHcCCcc-cEEeeeEecCCcEEEEEEE
Q psy10825 8 TFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDD-LDSVVTCHEALMQKGEGT-SCYYRFLTKGQQWIWLQTR 85 (140)
Q Consensus 8 ~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd-~~~~~~~~~~~~~~g~~~-~~e~r~~~~~G~~~wv~~~ 85 (140)
.+++|.+++|+++|++.+.+.||++++++|+++++.+.|.. .......+.+.+..|... ..+|.+ +++|.++++.
T Consensus 35 iivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~l~~~~~yv~-~~~~~p~~v~-- 111 (129)
T 1mzu_A 35 AIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVF-DFQMAPVRVQ-- 111 (129)
T ss_dssp EEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEE-ECSSCEEEEE--
T ss_pred EEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEE-cCCCCEEEEE--
Confidence 56789999999999999999999999999999999777653 444556666666677743 444443 7778866555
Q ss_pred EEEEEecCCCCceEE
Q psy10825 86 FYITYHQWNSKPEFI 100 (140)
Q Consensus 86 ~~~~~~~~~~~~~~i 100 (140)
.++...+ .+...++
T Consensus 112 i~l~~~~-~~~~~~i 125 (129)
T 1mzu_A 112 IRMQNAG-VPDRYWI 125 (129)
T ss_dssp EEEEECS-STTEEEE
T ss_pred EEEEEcC-CCCEEEE
Confidence 4456664 3433333
No 65
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.63 E-value=7.5e-08 Score=62.41 Aligned_cols=83 Identities=11% Similarity=-0.009 Sum_probs=61.6
Q ss_pred eEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccC-HHHHHHHHHHHHHcCCcc-cEEeeeEecCCcEEEEEE
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDD-LDSVVTCHEALMQKGEGT-SCYYRFLTKGQQWIWLQT 84 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd-~~~~~~~~~~~~~~g~~~-~~e~r~~~~~G~~~wv~~ 84 (140)
-.+++|.+++|+++|++.+.+.||++++++|+++++.+.|.. .......+.+.+..|... ..+|. .+++|.++++.
T Consensus 29 Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~l~~~~~~v-~~~~~~p~~v~- 106 (125)
T 1nwz_A 29 GAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYT-FDYQMTPTKVK- 106 (125)
T ss_dssp EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEE-ECTTSCCEEEE-
T ss_pred eEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEE-EcCCCCEEEEE-
Confidence 356799999999999999999999999999999999777653 444555666666677743 44444 37788866555
Q ss_pred EEEEEEec
Q psy10825 85 RFYITYHQ 92 (140)
Q Consensus 85 ~~~~~~~~ 92 (140)
.++...+
T Consensus 107 -i~l~~~~ 113 (125)
T 1nwz_A 107 -VHMKKAL 113 (125)
T ss_dssp -EEEEECS
T ss_pred -EEEEEcC
Confidence 4456665
No 66
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.44 E-value=1.5e-08 Score=62.46 Aligned_cols=90 Identities=17% Similarity=0.075 Sum_probs=62.2
Q ss_pred ceEEEEEecCCEEEEcCCcccccCc---CcchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGY---LPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWL 82 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy---~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv 82 (140)
...++++.+|+++++|++++.++|| ++++++|+++.+++++++ +...+..+..... .. ...+| .|+
T Consensus 26 ~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~-~~-~~~~~--~~~ 94 (118)
T 2w0n_A 26 EGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTPRRD-EE-ITIKD--RLL 94 (118)
T ss_dssp CCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCCCCC-CC-EESSS--CEE
T ss_pred ccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCceecc-EE-EEECC--EEE
Confidence 3457889999999999999999998 789999999999887643 3334444443211 11 12355 466
Q ss_pred EEEEEEEEecCCCCceEEEEEeEEcc
Q psy10825 83 QTRFYITYHQWNSKPEFIVCTHRVVS 108 (140)
Q Consensus 83 ~~~~~~~~~~~~~~~~~iv~~~~~it 108 (140)
..+..++.+ ++....++++..|||
T Consensus 95 ~~~~~p~~~--~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 95 LINTVPVRS--NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCEECCCC--SSCCCCEEECCCCCC
T ss_pred EEeeceeee--CCEEEEEEEEEEeCC
Confidence 667777765 455666777777765
No 67
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.33 E-value=1e-07 Score=71.02 Aligned_cols=82 Identities=10% Similarity=-0.012 Sum_probs=58.5
Q ss_pred EEEEEe-cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHH---------------HHcCCcccEEee
Q psy10825 8 TFCMSD-LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEAL---------------MQKGEGTSCYYR 71 (140)
Q Consensus 8 ~~v~~~-d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~---------------~~~g~~~~~e~r 71 (140)
.+++.. +|+|+|+++++..+|||+++|++|+++++++||+|+..+.+.+... ...+...++..|
T Consensus 39 ~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~qL~~~~lp~~~~~~~~~~~~~~~~~~rsF~CR 118 (320)
T 4dj2_A 39 SVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTTPSRLPTWGTGTSAGSGLKDFTQEKSVFCR 118 (320)
T ss_dssp EEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHHCCTTTCCBTTC-------------CCCEEEE
T ss_pred EEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHhhcccCCCCcccCcccccccccCCCceeEEEE
Confidence 355666 4999999999999999999999999999999999998777654210 001122355667
Q ss_pred eEecC-----CcEEEEEEEEEEE
Q psy10825 72 FLTKG-----QQWIWLQTRFYIT 89 (140)
Q Consensus 72 ~~~~~-----G~~~wv~~~~~~~ 89 (140)
+++.. ..|.++.+.++..
T Consensus 119 mr~~l~k~~~~~Y~~~~~~g~lk 141 (320)
T 4dj2_A 119 IRGGPDRDPGPRYQPFRLTPYVT 141 (320)
T ss_dssp ECCC-------CCEEEEEEEEEE
T ss_pred EEEeccCCCcccEEEEEEEEEec
Confidence 76532 3577778777654
No 68
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.17 E-value=3.2e-07 Score=62.21 Aligned_cols=92 Identities=7% Similarity=-0.056 Sum_probs=59.5
Q ss_pred ceEEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHHHHHHHHcCC-c-ccEEeeeEecCCcEEEEE
Q psy10825 6 PVTFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGE-G-TSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 6 ~~~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~-~-~~~e~r~~~~~G~~~wv~ 83 (140)
...+++|.+|+|+++|++++.++|++++++.|+++.+++++.+... .+..+. . ...++.+ +|.. +.
T Consensus 91 ~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~g~~--~~ 158 (190)
T 2jhe_A 91 EPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR-------WLESEPQDSHNEHVVI---NGQN--FL 158 (190)
T ss_dssp SCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCHHH-------HHHTCCCSCEEEEEEE---TTEE--EE
T ss_pred CcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCHHH-------HHhcCCCCCcceEEEE---CCeE--EE
Confidence 3457789999999999999999999999999999999887765432 233333 2 2233332 6654 44
Q ss_pred EEEEEEEecCCCC----ceEEEEEeEEccch
Q psy10825 84 TRFYITYHQWNSK----PEFIVCTHRVVSYV 110 (140)
Q Consensus 84 ~~~~~~~~~~~~~----~~~iv~~~~~it~~ 110 (140)
.+..++.++ ++. ..+++++.+|+|+.
T Consensus 159 ~~~~pi~~~-~~~~~~~~~g~v~~~~DiTe~ 188 (190)
T 2jhe_A 159 MEITPVYLQ-DENDQHVLTGAVVMLRSTIRM 188 (190)
T ss_dssp EEEEEETTT-TEEEEEEEE-HHHHHHHHTTT
T ss_pred EEEEEEEec-CCCCcceEEeEEEEEeccchh
Confidence 556677542 222 23344455666653
No 69
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=96.77 E-value=8.5e-06 Score=60.18 Aligned_cols=100 Identities=13% Similarity=-0.087 Sum_probs=62.5
Q ss_pred eEEEEEecCCEEEEcCCcccccC---cCcchhcCCCcceeeCcc---CH--HHHHHHHHHHHHc-CCcccEEeeeEecCC
Q psy10825 7 VTFCMSDLMNSTIYDLVAPPIIG---YLPFEVLGTSGYDYYHVD---DL--DSVVTCHEALMQK-GEGTSCYYRFLTKGQ 77 (140)
Q Consensus 7 ~~~v~~~d~~i~~~n~a~~~~lG---y~~~el~g~~~~~~vhpd---d~--~~~~~~~~~~~~~-g~~~~~e~r~~~~~G 77 (140)
-.+++|.+|+|+++|+++..++| +. ++++|+++.+++.+. .. ..+.+.+..++.+ +.....+... .|
T Consensus 182 GIivvD~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ei~~---~~ 257 (305)
T 2ykf_A 182 GFIRLDVDGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMRMEVDA---GG 257 (305)
Confidence 34678889999999999999985 54 789999999888643 11 0122322333333 2322222221 23
Q ss_pred cEEEEEEEEEEEEecCCCCceEEEEEeEEccchhhhh
Q psy10825 78 QWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLR 114 (140)
Q Consensus 78 ~~~wv~~~~~~~~~~~~~~~~~iv~~~~~it~~~~~~ 114 (140)
.++..+..++.+ +++..+++.+.+|+|+.+.++
T Consensus 258 --~~l~v~~~Pi~~--~g~~~G~Vvv~rDITE~~~lE 290 (305)
T 2ykf_A 258 --ATVLLRTLPLVV--AGRNVGAAILIRDVTEVKRRD 290 (305)
Confidence 456667777775 355666778888998766544
No 70
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=96.47 E-value=0.0036 Score=46.82 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=39.2
Q ss_pred EEEEe-cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHHH
Q psy10825 9 FCMSD-LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTC 55 (140)
Q Consensus 9 ~v~~~-d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~~ 55 (140)
++++. +++++.+|..+.+++|+++++++|+++.++++|++...+...
T Consensus 46 l~~~~~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l~~~ 93 (337)
T 2ool_A 46 FVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHA 93 (337)
T ss_dssp EEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHH
T ss_pred EEEECCCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHHHHHH
Confidence 44554 367999999999999999999999999999999877665544
No 71
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=92.54 E-value=1.8 Score=30.43 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=51.8
Q ss_pred cceEEEEE-ecCCEEEEcCCcccccCcCcchh----cCC----CcceeeCccCHHHHHHHHHHH---HHc-----CCcc-
Q psy10825 5 KPVTFCMS-DLMNSTIYDLVAPPIIGYLPFEV----LGT----SGYDYYHVDDLDSVVTCHEAL---MQK-----GEGT- 66 (140)
Q Consensus 5 ~~~~~v~~-~d~~i~~~n~a~~~~lGy~~~el----~g~----~~~~~vhpdd~~~~~~~~~~~---~~~-----g~~~- 66 (140)
|..-++.| ..+++.+++..+..++||+++++ +.. .+...+||+|...+....... +.. +...
T Consensus 43 ~~~~~l~D~~~~~~~~~s~~~~~llG~~~~~~~~~~~~~~~~~~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~ 122 (258)
T 3clo_A 43 GGCAVISDLSNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYR 122 (258)
T ss_dssp SSEEEEEETTTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEE
T ss_pred CCeEEEEEcCCCeEEEEeCCHHHHhCCCcccchHHHHhhhHHHHHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCe
Confidence 34456666 56679999999999999999877 322 244577999987655433322 111 1112
Q ss_pred -cEEeeeEecCCcEEEEEEEEEEEEe
Q psy10825 67 -SCYYRFLTKGQQWIWLQTRFYITYH 91 (140)
Q Consensus 67 -~~e~r~~~~~G~~~wv~~~~~~~~~ 91 (140)
..+++++...+.++.+......+..
T Consensus 123 ~~~dl~~~~~qe~fl~~~~~~~~~~~ 148 (258)
T 3clo_A 123 GRCRLRMMNEKGVYQYIDNLVQIMQN 148 (258)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred eeEEeecCCcCHHHHHHHHhHHhcCC
Confidence 2345555556666655444444433
No 72
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=87.10 E-value=0.23 Score=36.93 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=37.6
Q ss_pred EEEEEecCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHH
Q psy10825 8 TFCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVV 53 (140)
Q Consensus 8 ~~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~ 53 (140)
.++++.++.|+.++..+..++|.++++++|+++.+++.++....+.
T Consensus 32 Ll~~~~~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~~~~~l~ 77 (327)
T 4e04_A 32 LLALAADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLT 77 (327)
T ss_dssp EEEECTTCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHHHHHHHH
T ss_pred EEEEcCCCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHHHHHHHH
Confidence 3456656789999999999999999999999999998775554443
No 73
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=84.43 E-value=0.44 Score=35.62 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=37.1
Q ss_pred EEEEe-cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHHHH
Q psy10825 9 FCMSD-LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVT 54 (140)
Q Consensus 9 ~v~~~-d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~~~ 54 (140)
++++. ++.|+.++..+..++|.++++++|+++.+++.+ ....+..
T Consensus 56 L~l~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~-~~~~l~~ 101 (343)
T 3s7o_A 56 LTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE-QWPALQA 101 (343)
T ss_dssp EEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT-THHHHHH
T ss_pred EEEECCCCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH-HHHHHHH
Confidence 45554 678999999999999999999999999999877 6655543
No 74
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=62.31 E-value=2 Score=33.86 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=35.6
Q ss_pred EEEEe-cCCEEEEcCCcccccCcCcchhcCCCcceeeCccCHHHH
Q psy10825 9 FCMSD-LMNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSV 52 (140)
Q Consensus 9 ~v~~~-d~~i~~~n~a~~~~lGy~~~el~g~~~~~~vhpdd~~~~ 52 (140)
++++. ++.|+.++..+..++|.++++++|+++.+++.++....+
T Consensus 33 Lal~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l 77 (520)
T 3zq5_A 33 VVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDPI 77 (520)
T ss_dssp EEEETTTTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEESSCCCC
T ss_pred EEEECCCCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHHHHHHH
Confidence 45554 668999999999999999999999999888876554433
No 75
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=59.05 E-value=3.2 Score=32.62 Aligned_cols=42 Identities=7% Similarity=-0.025 Sum_probs=33.5
Q ss_pred EEEEecCCEEEEcCCcccccCcCcchhcCCCcce-eeCccCHHHH
Q psy10825 9 FCMSDLMNSTIYDLVAPPIIGYLPFEVLGTSGYD-YYHVDDLDSV 52 (140)
Q Consensus 9 ~v~~~d~~i~~~n~a~~~~lGy~~~el~g~~~~~-~vhpdd~~~~ 52 (140)
++++.++.|+.++..+..++|.++ ++|+++.+ ++.++....+
T Consensus 30 l~l~~~~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~~~~~~~l 72 (505)
T 3nhq_A 30 VTLRADGMVLAASENIQALLGFVA--SPGSYLTQEQVGPEVLRML 72 (505)
T ss_dssp EEECTTSBEEEEETTHHHHHSSCC--CTTCBCCHHHHHHHHHHHH
T ss_pred EEEcCCCeEEEEcccHHHHhCccc--ccCCchhhhhCCHHHHHHH
Confidence 456667789999999999999988 99999988 8765444433
No 76
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=26.03 E-value=30 Score=24.10 Aligned_cols=44 Identities=25% Similarity=0.334 Sum_probs=32.9
Q ss_pred cceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEE
Q psy10825 40 GYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83 (140)
Q Consensus 40 ~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~ 83 (140)
+.+.+...|...+.+.+..+-+.......++||...+.+.+|-.
T Consensus 34 l~~~l~~~d~~~L~~fF~sid~~~p~~~pDfRFI~~~~~~~WdD 77 (221)
T 2hje_A 34 IRDFYTDRDTDVLNFFFLSIDQSDPSHTPEFRFLTDHKGIIWDD 77 (221)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHSGGGCCSEEEEECSSSEEEEC
T ss_pred HHHHHHhccHHHHHHHHhcccccCcCCCCcEEEEEeCCceEEEC
Confidence 44556667777788888877665455678899999999988843
No 77
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=25.75 E-value=1.4e+02 Score=19.45 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=41.3
Q ss_pred cchhcCCCcceeeCccCHHHHHHHHHHHHHcCCcccEEeeeEecCCcEEEEEEEEEEEEecCCCCceEEEEEeEEccchh
Q psy10825 32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVN 111 (140)
Q Consensus 32 ~~el~g~~~~~~vhpdd~~~~~~~~~~~~~~g~~~~~e~r~~~~~G~~~wv~~~~~~~~~~~~~~~~~iv~~~~~it~~~ 111 (140)
..++.|+++.++-.|.....+.+.+..+ +.|. ..++|.+..++... ...=.++...- ....++||+...+.+.+
T Consensus 87 ~p~l~Gk~~~~~~D~~G~~~~~~~~~~a-~~g~-G~v~Y~w~~p~~~~-~~~Klsyv~~~---~~w~W~IgtG~y~ddi~ 160 (181)
T 3ub6_A 87 NPKTVGQSGLDAQSVDGVYYVRGYLEAA-KKGG-GYTYYKMPKYDGGV-PEKKFAYSHYD---EVSQMVIAATSYYTDIN 160 (181)
T ss_dssp SGGGTTSBCTTCCCTTSCCHHHHHHHHH-HTTS-EEEEEEECSSTTSC-CEEEEEEEEEE---TTTTEEEEEEEEHHHHH
T ss_pred ChhhcCCccccccCCCccHHHHHHHHHH-hcCC-cEEEEEeccCCCCC-ccceEEEEEEE---CCCCEEEEEeeEHHHHH
Confidence 4678888888877776655555555554 3433 34456665443221 11111222222 23578999887777654
No 78
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=24.11 E-value=33 Score=19.43 Aligned_cols=16 Identities=13% Similarity=-0.164 Sum_probs=12.9
Q ss_pred EEEEEecCCEEEEcCC
Q psy10825 8 TFCMSDLMNSTIYDLV 23 (140)
Q Consensus 8 ~~v~~~d~~i~~~n~a 23 (140)
.-|+|..|+++|+++.
T Consensus 52 tGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 52 TGVIDDRGKFIYITPS 67 (72)
T ss_dssp CEEECTTCCEEECCCS
T ss_pred EEEEeCCCCEEEecHH
Confidence 3478889999999874
Done!