AmiGO: BLAST Results


BLAST match view associations BLAST with Clk Clk Clk Clock	protein from Drosophila melanogaster	9.4e-42
BLAST match view associations BLAST with F1NGR0 F1NGR0 F1NGR0 Uncharacterized protein	protein from Gallus gallus	2.8e-41
BLAST match view associations BLAST with Clock Clock Clock Circadian locomoter output cycles protein kaput	protein from Nannospalax galili	3.1e-41
BLAST match view associations BLAST with Clock Clock Clock Circadian locomoter output cycles protein kaput	protein from Spalax carmeli	3.1e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Circadian locomoter output cycles protein kaput	protein from Gallus gallus	3.9e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Circadian locomoter output cycles protein kaput	protein from Gallus gallus	3.9e-41
BLAST match view associations BLAST with Clock Clock Clock clock circadian regulator	gene from Rattus norvegicus	4.0e-41
BLAST match view associations BLAST with Clock Clock Clock Circadian locomoter output cycles protein kaput	protein from Rattus norvegicus	4.0e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Circadian locomoter output cycles protein kaput	protein from Gallus gallus	4.2e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Uncharacterized protein	protein from Sus scrofa	5.9e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Uncharacterized protein	protein from Bos taurus	7.9e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Circadian locomoter output cycles protein kaput	protein from Homo sapiens	7.9e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Circadian locomoter output cycles protein kaput	protein from Pongo abelii	7.9e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Uncharacterized protein	protein from Canis lupus familiaris	8.0e-41
BLAST match view associations BLAST with Clock Clock Clock circadian locomotor output cycles kaput	protein from Mus musculus	8.2e-41
BLAST match view associations BLAST with Clock Clock Clock Circadian locomoter output cycles protein kaput	protein from Nannospalax judaei	8.5e-41
BLAST match view associations BLAST with clock clock clock	gene_product from Danio rerio	3.3e-40
BLAST match view associations BLAST with npas2 npas2 npas2 neuronal PAS domain protein 2	gene_product from Danio rerio	9.6e-40
BLAST match view associations BLAST with clock3 clock3 clock3 clock homolog 3 (mouse)	gene_product from Danio rerio	1.1e-39
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Neuronal PAS domain-containing protein 2	protein from Gallus gallus	1.4e-39
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Neuronal PAS domain-containing protein 2	protein from Gallus gallus	1.4e-39
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Uncharacterized protein	protein from Canis lupus familiaris	6.8e-39
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Uncharacterized protein	protein from Bos taurus	1.2e-38
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Uncharacterized protein	protein from Sus scrofa	1.2e-38
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Neuronal PAS domain-containing protein 2	protein from Homo sapiens	1.4e-38
BLAST match view associations BLAST with Npas2 Npas2 Npas2 neuronal PAS domain protein 2	gene from Rattus norvegicus	1.7e-38
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Uncharacterized protein	protein from Canis lupus familiaris	1.7e-38
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Neuronal PAS domain-containing protein 2	protein from Homo sapiens	1.7e-38
BLAST match view associations BLAST with Npas2 Npas2 Npas2 neuronal PAS domain protein 2	protein from Mus musculus	5.9e-38
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Neuronal PAS domain-containing protein 2	protein from Homo sapiens	2.4e-24
BLAST match view associations BLAST with ss ss ss spineless	protein from Drosophila melanogaster	8.1e-14
BLAST match view associations BLAST with epas1b epas1b epas1b endothelial PAS domain protein 1b	gene_product from Danio rerio	4.1e-13
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Uncharacterized protein	protein from Canis lupus familiaris	4.7e-13
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Uncharacterized protein	protein from Sus scrofa	8.9e-13
BLAST match view associations BLAST with arntl2 arntl2 arntl2 aryl hydrocarbon receptor nuclear translocator-like 2	gene_product from Danio rerio	1.2e-12
BLAST match view associations BLAST with Hif1a Hif1a Hif1a hypoxia inducible factor 1, alpha subunit	protein from Mus musculus	1.8e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Homo sapiens	1.9e-12
BLAST match view associations BLAST with Q4R658 Q4R658 Q4R658 Testis cDNA, clone: QtsA-19088, similar to human hypoxia-inducible factor 1, alpha subunit (basichelix-loop-helix transcription factor) (HIF1A),transcript variant 1,	protein from Macaca fascicularis	2.3e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia inducible factor 1, alpha subunit (Basic helix-loop-helix transcription factor)	protein from Bos taurus	2.9e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Bos taurus	2.9e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Bos grunniens	2.9e-12
BLAST match view associations BLAST with Q52RL7 Q52RL7 Q52RL7 Hypoxia inducible factor-1 alpha	protein from Pantholops hodgsonii	2.9e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Uncharacterized protein	protein from Bos taurus	3.1e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Homo sapiens	3.3e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Eospalax baileyi	3.7e-12
BLAST match view associations BLAST with Q7YSE5 Q7YSE5 Q7YSE5 Hypoxia inducible factor 1 alpha subunit	protein from Oryctolagus cuniculus	3.7e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Uncharacterized protein	protein from Sus scrofa	3.7e-12
BLAST match view associations BLAST with hif-1a hif-1a hif-1a Hypoxia inducible factor 1 alpha	protein from Nannospalax judaei	3.7e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Homo sapiens	3.7e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Homo sapiens	3.7e-12
BLAST match view associations BLAST with Q4ZH58 Q4ZH58 Q4ZH58 Hypoxia-inducible factor 1 alpha	protein from Microtus oeconomus	3.7e-12
BLAST match view associations BLAST with arntl1a arntl1a arntl1a aryl hydrocarbon receptor nuclear translocator-like 1a	gene_product from Danio rerio	4.0e-12
BLAST match view associations BLAST with Q64F54 Q64F54 Q64F54 Hypoxia-inducible factor 1 alpha subunit	protein from Ictidomys tridecemlineatus	4.7e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Pongo abelii	5.1e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Homo sapiens	5.1e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Equus caballus	5.1e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Mesocricetus auratus	5.1e-12
BLAST match view associations BLAST with Arntl Arntl Arntl Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Nannospalax galili	5.1e-12
BLAST match view associations BLAST with Arntl Arntl Arntl aryl hydrocarbon receptor nuclear translocator-like	gene from Rattus norvegicus	5.1e-12
BLAST match view associations BLAST with Arntl Arntl Arntl Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Rattus norvegicus	5.1e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Uncharacterized protein	protein from Canis lupus familiaris	5.2e-12
BLAST match view associations BLAST with Arntl Arntl Arntl aryl hydrocarbon receptor nuclear translocator-like	protein from Mus musculus	5.2e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Uncharacterized protein	protein from Canis lupus familiaris	5.6e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Gallus gallus	5.9e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Gallus gallus	5.9e-12
BLAST match view associations BLAST with Hif1a Hif1a Hif1a hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)	gene from Rattus norvegicus	6.1e-12
BLAST match view associations BLAST with Hif1a Hif1a Hif1a Hypoxia-inducible factor 1-alpha	protein from Rattus norvegicus	6.1e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Gallus gallus	6.7e-12
BLAST match view associations BLAST with arntl1b arntl1b arntl1b aryl hydrocarbon receptor nuclear translocator-like 1b	gene_product from Danio rerio	6.9e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Homo sapiens	1.3e-11
BLAST match view associations BLAST with EPAS1 EPAS1 EPAS1 Uncharacterized protein	protein from Sus scrofa	2.2e-11
BLAST match view associations BLAST with EPAS1 EPAS1 EPAS1 Endothelial PAS domain-containing protein 1	protein from Homo sapiens	2.2e-11
BLAST match view associations BLAST with hif1ab hif1ab hif1ab hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) b	gene_product from Danio rerio	2.4e-11
BLAST match view associations BLAST with hif1a hif1a hif1a Hypoxia-inducible factor 1-alpha	protein from Xenopus laevis	2.6e-11
BLAST match view associations BLAST with EPAS1 EPAS1 EPAS1 Uncharacterized protein	protein from Gallus gallus	2.8e-11
BLAST match view associations BLAST with EPAS1 EPAS1 EPAS1 Uncharacterized protein	protein from Canis lupus familiaris	2.9e-11
BLAST match view associations BLAST with EPAS1 EPAS1 EPAS1 Uncharacterized protein	protein from Bos taurus	2.9e-11
BLAST match view associations BLAST with Epas1 Epas1 Epas1 endothelial PAS domain protein 1	protein from Mus musculus	2.9e-11
BLAST match view associations BLAST with Epas1 Epas1 Epas1 endothelial PAS domain protein 1	gene from Rattus norvegicus	2.9e-11
BLAST match view associations BLAST with Epas1 Epas1 Epas1 Endothelial PAS domain-containing protein 1	protein from Rattus norvegicus	2.9e-11
BLAST match view associations BLAST with epas1a epas1a epas1a endothelial PAS domain protein 1a	gene_product from Danio rerio	4.5e-11
BLAST match view associations BLAST with sim sim sim single-minded	protein from Drosophila melanogaster	9.2e-11
BLAST match view associations BLAST with ARNTL2 ARNTL2 ARNTL2 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-10
BLAST match view associations BLAST with ARNTL2 ARNTL2 ARNTL2 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-10
BLAST match view associations BLAST with Arntl2 Arntl2 Arntl2 aryl hydrocarbon receptor nuclear translocator-like 2	gene from Rattus norvegicus	1.8e-10
BLAST match view associations BLAST with hif1al hif1al hif1al hypoxia-inducible factor 1, alpha subunit, like	gene_product from Danio rerio	2.7e-10
BLAST match view associations BLAST with Arntl2 Arntl2 Arntl2 aryl hydrocarbon receptor nuclear translocator-like 2	protein from Mus musculus	3.1e-10
BLAST match view associations BLAST with ARNTL2 ARNTL2 ARNTL2 Aryl hydrocarbon receptor nuclear translocator-like protein 2	protein from Homo sapiens	4.0e-10
BLAST match view associations BLAST with ARNTL2 ARNTL2 ARNTL2 Aryl hydrocarbon receptor nuclear translocator-like protein 2	protein from Homo sapiens	4.5e-10
BLAST match view associations BLAST with cyc cyc cyc cycle	protein from Drosophila melanogaster	9.7e-10
BLAST match view associations BLAST with per per per period	protein from Drosophila melanogaster	1.1e-09
BLAST match view associations BLAST with HIF3A HIF3A HIF3A Uncharacterized protein	protein from Sus scrofa	1.7e-09
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy10825
        (140 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0023076 - symbol:Clk "Clock" species:7227 "Drosoph...   440  9.4e-42   2
UNIPROTKB|F1NGR0 - symbol:F1NGR0 "Uncharacterized protein...   429  2.8e-41   2
UNIPROTKB|Q91YB0 - symbol:Clock "Circadian locomoter outp...   446  3.1e-41   1
UNIPROTKB|Q91YB2 - symbol:Clock "Circadian locomoter outp...   446  3.1e-41   1
UNIPROTKB|D4A4R8 - symbol:Clock "Circadian locomoter outp...   445  3.5e-41   1
UNIPROTKB|F1NKI9 - symbol:CLOCK "Circadian locomoter outp...   445  3.9e-41   1
UNIPROTKB|F1M012 - symbol:Clock "Circadian locomoter outp...   445  3.9e-41   1
UNIPROTKB|F1NKI8 - symbol:CLOCK "Circadian locomoter outp...   445  3.9e-41   1
RGD|620271 - symbol:Clock "clock circadian regulator" spe...   445  4.0e-41   1
UNIPROTKB|Q9WVS9 - symbol:Clock "Circadian locomoter outp...   445  4.0e-41   1
UNIPROTKB|Q8QGQ6 - symbol:CLOCK "Circadian locomoter outp...   445  4.2e-41   1
UNIPROTKB|F1P1C0 - symbol:CLOCK "Circadian locomoter outp...   445  4.2e-41   1
UNIPROTKB|F1RVI1 - symbol:CLOCK "Uncharacterized protein"...   435  5.9e-41   1
UNIPROTKB|F1MLT7 - symbol:CLOCK "Uncharacterized protein"...   442  7.9e-41   1
UNIPROTKB|O15516 - symbol:CLOCK "Circadian locomoter outp...   442  7.9e-41   1
UNIPROTKB|Q5RAK8 - symbol:CLOCK "Circadian locomoter outp...   442  7.9e-41   1
UNIPROTKB|F1PSD8 - symbol:CLOCK "Uncharacterized protein"...   442  8.0e-41   1
MGI|MGI:99698 - symbol:Clock "circadian locomotor output ...   442  8.2e-41   1
UNIPROTKB|Q91YA8 - symbol:Clock "Circadian locomoter outp...   442  8.5e-41   1
ZFIN|ZDB-GENE-990630-14 - symbol:clock "clock" species:79...   437  3.3e-40   1
ZFIN|ZDB-GENE-030408-3 - symbol:npas2 "neuronal PAS domai...   432  9.6e-40   1
ZFIN|ZDB-GENE-030408-2 - symbol:clock3 "clock homolog 3 (...   431  1.1e-39   1
UNIPROTKB|F1P5G3 - symbol:NPAS2 "Neuronal PAS domain-cont...   430  1.4e-39   1
UNIPROTKB|Q5ZQU2 - symbol:NPAS2 "Neuronal PAS domain-cont...   430  1.4e-39   1
UNIPROTKB|E1BZV0 - symbol:NPAS2 "Neuronal PAS domain-cont...   430  1.4e-39   1
UNIPROTKB|J9P4Q7 - symbol:NPAS2 "Uncharacterized protein"...   420  6.8e-39   1
UNIPROTKB|F6QL92 - symbol:NPAS2 "Uncharacterized protein"...   421  1.2e-38   1
UNIPROTKB|F1STF9 - symbol:NPAS2 "Uncharacterized protein"...   421  1.2e-38   1
UNIPROTKB|Q99743 - symbol:NPAS2 "Neuronal PAS domain-cont...   421  1.4e-38   1
RGD|1309681 - symbol:Npas2 "neuronal PAS domain protein 2...   420  1.7e-38   1
UNIPROTKB|F1PPU8 - symbol:NPAS2 "Uncharacterized protein"...   420  1.7e-38   1
UNIPROTKB|F5H027 - symbol:NPAS2 "Neuronal PAS domain-cont...   421  1.7e-38   1
MGI|MGI:109232 - symbol:Npas2 "neuronal PAS domain protei...   415  5.9e-38   1
UNIPROTKB|H7BZA3 - symbol:NPAS2 "Neuronal PAS domain-cont...   256  2.4e-24   2
FB|FBgn0003513 - symbol:ss "spineless" species:7227 "Dros...   180  8.1e-14   2
ZFIN|ZDB-GENE-060607-11 - symbol:epas1b "endothelial PAS ...   184  4.1e-13   1
UNIPROTKB|F1PZ54 - symbol:HIF1A "Uncharacterized protein"...   175  4.7e-13   2
UNIPROTKB|F1S978 - symbol:ARNTL "Uncharacterized protein"...   172  8.9e-13   1
ZFIN|ZDB-GENE-000509-2 - symbol:arntl2 "aryl hydrocarbon ...   178  1.2e-12   1
UNIPROTKB|F1LT63 - symbol:Hif1a "Hypoxia-inducible factor...   178  1.8e-12   1
UNIPROTKB|D4A8P8 - symbol:Hif1a "Hypoxia-inducible factor...   178  1.8e-12   1
MGI|MGI:106918 - symbol:Hif1a "hypoxia inducible factor 1...   178  1.8e-12   1
UNIPROTKB|H0YER9 - symbol:ARNTL "Aryl hydrocarbon recepto...   166  1.9e-12   1
UNIPROTKB|Q4R658 - symbol:Q4R658 "Testis cDNA, clone: Qts...   177  2.3e-12   1
UNIPROTKB|A0JND0 - symbol:HIF1A "Hypoxia-inducible factor...   176  2.9e-12   1
UNIPROTKB|Q9XTA5 - symbol:HIF1A "Hypoxia-inducible factor...   176  2.9e-12   1
UNIPROTKB|Q0PGG7 - symbol:HIF1A "Hypoxia-inducible factor...   176  2.9e-12   1
UNIPROTKB|Q52RL7 - symbol:Q52RL7 "Hypoxia inducible facto...   176  2.9e-12   1
UNIPROTKB|E1BLF5 - symbol:ARNTL "Uncharacterized protein"...   174  3.1e-12   1
UNIPROTKB|F8W9L0 - symbol:HIF1A "Hypoxia-inducible factor...   175  3.3e-12   1
UNIPROTKB|Q309Z6 - symbol:HIF1A "Hypoxia-inducible factor...   175  3.7e-12   1
UNIPROTKB|Q7YSE5 - symbol:Q7YSE5 "Hypoxia inducible facto...   175  3.7e-12   1
UNIPROTKB|F1SRU5 - symbol:HIF1A "Uncharacterized protein"...   175  3.7e-12   1
UNIPROTKB|Q6H8T3 - symbol:hif-1a "Hypoxia inducible facto...   175  3.7e-12   1
UNIPROTKB|Q16665 - symbol:HIF1A "Hypoxia-inducible factor...   175  3.7e-12   1
UNIPROTKB|A8MYV6 - symbol:HIF1A "Hypoxia-inducible factor...   175  3.7e-12   1
UNIPROTKB|Q4ZH58 - symbol:Q4ZH58 "Hypoxia-inducible facto...   175  3.7e-12   1
ZFIN|ZDB-GENE-000509-1 - symbol:arntl1a "aryl hydrocarbon...   173  4.0e-12   1
UNIPROTKB|Q64F54 - symbol:Q64F54 "Hypoxia-inducible facto...   174  4.7e-12   1
UNIPROTKB|Q5R4T2 - symbol:ARNTL "Aryl hydrocarbon recepto...   172  5.1e-12   1
UNIPROTKB|O00327 - symbol:ARNTL "Aryl hydrocarbon recepto...   172  5.1e-12   1
UNIPROTKB|A0MLS5 - symbol:ARNTL "Aryl hydrocarbon recepto...   172  5.1e-12   1
UNIPROTKB|O88529 - symbol:ARNTL "Aryl hydrocarbon recepto...   172  5.1e-12   1
UNIPROTKB|Q91YA9 - symbol:Arntl "Aryl hydrocarbon recepto...   172  5.1e-12   1
RGD|62003 - symbol:Arntl "aryl hydrocarbon receptor nucle...   172  5.1e-12   1
UNIPROTKB|Q9EPW1 - symbol:Arntl "Aryl hydrocarbon recepto...   172  5.1e-12   1
UNIPROTKB|E2R130 - symbol:ARNTL "Uncharacterized protein"...   172  5.2e-12   1
MGI|MGI:1096381 - symbol:Arntl "aryl hydrocarbon receptor...   172  5.2e-12   1
UNIPROTKB|J9NTT7 - symbol:ARNTL "Uncharacterized protein"...   172  5.6e-12   1
UNIPROTKB|F1NJK2 - symbol:HIF1A "Hypoxia-inducible factor...   173  5.9e-12   1
UNIPROTKB|F1NQK5 - symbol:HIF1A "Hypoxia-inducible factor...   173  5.9e-12   1
UNIPROTKB|Q9YIB9 - symbol:HIF1A "Hypoxia-inducible factor...   173  5.9e-12   1
RGD|61928 - symbol:Hif1a "hypoxia-inducible factor 1, alp...   173  6.1e-12   1
UNIPROTKB|O35800 - symbol:Hif1a "Hypoxia-inducible factor...   173  6.1e-12   1
UNIPROTKB|Q9I8T7 - symbol:ARNTL "Aryl hydrocarbon recepto...   171  6.7e-12   1
ZFIN|ZDB-GENE-030408-1 - symbol:arntl1b "aryl hydrocarbon...   171  6.9e-12   1
UNIPROTKB|F8W6J9 - symbol:ARNTL "Aryl hydrocarbon recepto...   167  1.3e-11   1
UNIPROTKB|F1S5K9 - symbol:EPAS1 "Uncharacterized protein"...   168  2.2e-11   1
UNIPROTKB|Q99814 - symbol:EPAS1 "Endothelial PAS domain-c...   168  2.2e-11   1
ZFIN|ZDB-GENE-040426-706 - symbol:hif1ab "hypoxia-inducib...   167  2.4e-11   1
UNIPROTKB|Q9I8A9 - symbol:hif1a "Hypoxia-inducible factor...   167  2.6e-11   1
UNIPROTKB|F1NG41 - symbol:EPAS1 "Uncharacterized protein"...   167  2.8e-11   1
UNIPROTKB|E2QUK0 - symbol:EPAS1 "Uncharacterized protein"...   167  2.9e-11   1
UNIPROTKB|A5PJT1 - symbol:EPAS1 "Uncharacterized protein"...   167  2.9e-11   1
MGI|MGI:109169 - symbol:Epas1 "endothelial PAS domain pro...   167  2.9e-11   1
RGD|68404 - symbol:Epas1 "endothelial PAS domain protein ...   167  2.9e-11   1
UNIPROTKB|Q9JHS1 - symbol:Epas1 "Endothelial PAS domain-c...   167  2.9e-11   1
ZFIN|ZDB-GENE-030131-4490 - symbol:epas1a "endothelial PA...   165  4.5e-11   1
FB|FBgn0004666 - symbol:sim "single-minded" species:7227 ...   161  9.2e-11   1
UNIPROTKB|J9P3T5 - symbol:ARNTL2 "Uncharacterized protein...   159  1.2e-10   1
UNIPROTKB|F1PZY3 - symbol:ARNTL2 "Uncharacterized protein...   159  1.3e-10   1
RGD|620230 - symbol:Arntl2 "aryl hydrocarbon receptor nuc...   157  1.8e-10   1
ZFIN|ZDB-GENE-040426-1315 - symbol:hif1al "hypoxia-induci...   156  2.7e-10   1
MGI|MGI:2684845 - symbol:Arntl2 "aryl hydrocarbon recepto...   155  3.1e-10   1
UNIPROTKB|H0Y5R1 - symbol:ARNTL2 "Aryl hydrocarbon recept...   154  4.0e-10   1
UNIPROTKB|Q8WYA1 - symbol:ARNTL2 "Aryl hydrocarbon recept...   154  4.5e-10   1
UNIPROTKB|F1NQK6 - symbol:HIF1A "Hypoxia-inducible factor...   150  9.0e-10   1
FB|FBgn0023094 - symbol:cyc "cycle" species:7227 "Drosoph...   148  9.7e-10   1
FB|FBgn0003068 - symbol:per "period" species:7227 "Drosop...   145  1.1e-09   2
UNIPROTKB|F1RM22 - symbol:HIF3A "Uncharacterized protein"...   149  1.7e-09   1

WARNING:  Descriptions of 117 database sequences were not reported due to the
          limiting value of parameter V = 100.


>FB|FBgn0023076 [details] [associations]
            symbol:Clk "Clock" species:7227 "Drosophila melanogaster"
            [GO:0003677 "DNA binding" evidence=IDA;NAS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IGI;NAS;TAS]
            [GO:0007623 "circadian rhythm" evidence=NAS;IMP;TAS] [GO:0046982
            "protein heterodimerization activity" evidence=NAS;IPI] [GO:0000977
            "RNA polymerase II regulatory region sequence-specific DNA binding"
            evidence=IPI] [GO:0008134 "transcription factor binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=NAS] [GO:0048148
            "behavioral response to cocaine" evidence=NAS;TAS] [GO:0045475
            "locomotor rhythm" evidence=IMP;NAS;TAS] [GO:0008062 "eclosion
            rhythm" evidence=NAS;TAS] [GO:0045187 "regulation of circadian
            sleep/wake cycle, sleep" evidence=IMP] [GO:0007622 "rhythmic
            behavior" evidence=TAS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter"
            evidence=IDA;NAS;TAS] [GO:0007165 "signal transduction"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=NAS] [GO:0032922
            "circadian regulation of gene expression" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            Pfam:PF00010 Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0005737 EMBL:AE014296 GO:GO:0003677
            GO:GO:0045187 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0000122 GO:GO:0004871 GO:GO:0046982
            GO:GO:0048148 GO:GO:0045475 GO:GO:0032922 SMART:SM00086
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            eggNOG:NOG300360 KO:K02223 EMBL:AF065133 EMBL:AF069997
            EMBL:AF067207 PIR:T13062 PIR:T13068 PIR:T13071
            RefSeq:NP_001014574.1 RefSeq:NP_001014576.1 RefSeq:NP_523964.2
            UniGene:Dm.7596 ProteinModelPortal:O61735 SMR:O61735 IntAct:O61735
            MINT:MINT-7025605 STRING:O61735 PaxDb:O61735
            EnsemblMetazoa:FBtr0100132 GeneID:38872 KEGG:dme:Dmel_CG7391
            UCSC:CG7391-RA CTD:363233 FlyBase:FBgn0023076 InParanoid:O61735
            OMA:IVACHEE OrthoDB:EOG4HHMHD PhylomeDB:O61735 GenomeRNAi:38872
            NextBio:810786 Bgee:O61735 GermOnline:CG7391 GO:GO:0008062
            Uniprot:O61735
        Length = 1027

 Score = 440 (159.9 bits), Expect = 9.4e-42, Sum P(2) = 9.4e-42
 Identities = 76/115 (66%), Positives = 90/115 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGY+PFEVLGTSGYDYYH DDLDS+V CHE L Q GEG SCYYRFLTKGQQWIWLQ
Sbjct:   284 APPIIGYMPFEVLGTSGYDYYHFDDLDSIVACHEELRQTGEGKSCYYRFLTKGQQWIWLQ 343

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTI 138
             T +Y++YHQ+NSKP+++VCTH+VVSY  VL+    +   S   ++ T  G S  I
Sbjct:   344 TDYYVSYHQFNSKPDYVVCTHKVVSYAEVLKDSRKEGQKSGNSNSITNNGSSKVI 398

 Score = 40 (19.1 bits), Expect = 9.4e-42, Sum P(2) = 9.4e-42
 Identities = 8/10 (80%), Positives = 8/10 (80%)

Query:    13 DLMNSTIYDL 22
             DL N TIYDL
Sbjct:   129 DLYNMTIYDL 138


>UNIPROTKB|F1NGR0 [details] [associations]
            symbol:F1NGR0 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005667 "transcription
            factor complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005667 GO:GO:0004871 SMART:SM00086
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            EMBL:AADN02013650 EMBL:AADN02013651 IPI:IPI00577457
            Ensembl:ENSGALT00000014751 OMA:GHPRKMD Uniprot:F1NGR0
        Length = 675

 Score = 429 (156.1 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
 Identities = 78/104 (75%), Positives = 84/104 (80%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYH DDL+ +  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   272 APPIIGYLPFEVLGTSGYDYYHADDLELLARCHEHLMQFGKGKSCYYRFLTKGQQWIWLQ 331

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQS 127
             T +YITYHQWNSKPEFIVCTH VVSY  V R +  +    EE S
Sbjct:   332 THYYITYHQWNSKPEFIVCTHLVVSYAEV-RAEKRRDLGLEESS 374

 Score = 34 (17.0 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query:     7 VTFCMSDLMNSTIYDLVAPPIIGYLP 32
             V+  +S L+     DLV   I+ +LP
Sbjct:   113 VSDSVSSLLGHLPSDLVDQNILNFLP 138


>UNIPROTKB|Q91YB0 [details] [associations]
            symbol:Clock "Circadian locomoter output cycles protein
            kaput" species:1026970 "Nannospalax galili" [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0005667 "transcription factor complex"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0032922 "circadian regulation of
            gene expression" evidence=ISS] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 EMBL:AJ318057
            GO:GO:0005737 GO:GO:0005694 GO:GO:0003677 GO:GO:0016573
            GO:GO:0003700 GO:GO:0006351 GO:GO:0006974 GO:GO:0005667
            GO:GO:0004871 GO:GO:0032922 SMART:SM00086 Gene3D:4.10.280.10
            SUPFAM:SSF47459 HSSP:P36956 GO:GO:0004402 HOVERGEN:HBG050997
            ProteinModelPortal:Q91YB0 Uniprot:Q91YB0
        Length = 865

 Score = 446 (162.1 bits), Expect = 3.1e-41, P = 3.1e-41
 Identities = 83/125 (66%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +PD+  ++S D+G  +  
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPDAAADKSQDSGSDNRI 412

Query:   136 NTIKM 140
             NT+ +
Sbjct:   413 NTVSL 417


>UNIPROTKB|Q91YB2 [details] [associations]
            symbol:Clock "Circadian locomoter output cycles protein
            kaput" species:164324 "Spalax carmeli" [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0005667 "transcription factor complex"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0032922 "circadian regulation of
            gene expression" evidence=ISS] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005737
            GO:GO:0005694 GO:GO:0003677 GO:GO:0016573 GO:GO:0003700
            GO:GO:0006351 GO:GO:0006974 GO:GO:0005667 GO:GO:0004871
            GO:GO:0032922 SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459
            HSSP:P36956 GO:GO:0004402 HOVERGEN:HBG050997 EMBL:AJ318058
            ProteinModelPortal:Q91YB2 Uniprot:Q91YB2
        Length = 865

 Score = 446 (162.1 bits), Expect = 3.1e-41, P = 3.1e-41
 Identities = 83/125 (66%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +PD+  ++S D+G  +  
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPDAAADKSQDSGSDNRI 412

Query:   136 NTIKM 140
             NT+ +
Sbjct:   413 NTVSL 417


>UNIPROTKB|D4A4R8 [details] [associations]
            symbol:Clock "Circadian locomoter output cycles protein
            kaput" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005667 "transcription
            factor complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 RGD:620271
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0004871 SMART:SM00086
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            IPI:IPI00201128 UniGene:Rn.205839 EMBL:CH473981
            Ensembl:ENSRNOT00000002981 Uniprot:D4A4R8
        Length = 833

 Score = 445 (161.7 bits), Expect = 3.5e-41, P = 3.5e-41
 Identities = 83/125 (66%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+S+  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLESLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P++  ++S D+G  +  
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKSQDSGSDNRI 412

Query:   136 NTIKM 140
             NT+ +
Sbjct:   413 NTVSL 417


>UNIPROTKB|F1NKI9 [details] [associations]
            symbol:CLOCK "Circadian locomoter output cycles protein
            kaput" species:9031 "Gallus gallus" [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0004871 "signal transducer activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005737
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 SMART:SM00086 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AADN02031315
            EMBL:AADN02031314 IPI:IPI00581385 Ensembl:ENSGALT00000037539
            ArrayExpress:F1NKI9 Uniprot:F1NKI9
        Length = 854

 Score = 445 (161.7 bits), Expect = 3.9e-41, P = 3.9e-41
 Identities = 83/125 (66%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDLD++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLDNLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P+ + ++S D+G  +  
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPEIKADKSQDSGSDNHI 412

Query:   136 NTIKM 140
             NT+ +
Sbjct:   413 NTVSL 417


>UNIPROTKB|F1M012 [details] [associations]
            symbol:Clock "Circadian locomoter output cycles protein
            kaput" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005667 "transcription
            factor complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 RGD:620271
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0004871 SMART:SM00086 Gene3D:4.10.280.10
            SUPFAM:SSF47459 IPI:IPI00557436 Ensembl:ENSRNOT00000051891
            ArrayExpress:F1M012 Uniprot:F1M012
        Length = 857

 Score = 445 (161.7 bits), Expect = 3.9e-41, P = 3.9e-41
 Identities = 83/125 (66%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+S+  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   295 APPIIGYLPFEVLGTSGYDYYHVDDLESLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 354

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P++  ++S D+G  +  
Sbjct:   355 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKSQDSGSDNRI 414

Query:   136 NTIKM 140
             NT+ +
Sbjct:   415 NTVSL 419


>UNIPROTKB|F1NKI8 [details] [associations]
            symbol:CLOCK "Circadian locomoter output cycles protein
            kaput" species:9031 "Gallus gallus" [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0004871 "signal transducer activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005737
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 SMART:SM00086 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AADN02031315
            EMBL:AADN02031314 IPI:IPI01017404 Ensembl:ENSGALT00000037540
            ArrayExpress:F1NKI8 Uniprot:F1NKI8
        Length = 859

 Score = 445 (161.7 bits), Expect = 3.9e-41, P = 3.9e-41
 Identities = 83/125 (66%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDLD++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   294 APPIIGYLPFEVLGTSGYDYYHVDDLDNLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 353

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P+ + ++S D+G  +  
Sbjct:   354 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPEIKADKSQDSGSDNHI 413

Query:   136 NTIKM 140
             NT+ +
Sbjct:   414 NTVSL 418


>RGD|620271 [details] [associations]
            symbol:Clock "clock circadian regulator" species:10116 "Rattus
            norvegicus" [GO:0000077 "DNA damage checkpoint" evidence=IEA;ISO]
            [GO:0000978 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding" evidence=IEA;ISO] [GO:0000982 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity" evidence=IEA;ISO]
            [GO:0001190 "RNA polymerase II transcription factor binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=IEA;ISO] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO;ISS] [GO:0004402
            "histone acetyltransferase activity" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005667 "transcription factor complex"
            evidence=IEA;ISO;ISS] [GO:0005694 "chromosome" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISO;ISS]
            [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
            [GO:0007623 "circadian rhythm" evidence=ISO;NAS] [GO:0009649
            "entrainment of circadian clock" evidence=IEP] [GO:0032922
            "circadian regulation of gene expression" evidence=IEA;ISO;ISS]
            [GO:0043231 "intracellular membrane-bounded organelle"
            evidence=ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0070888 "E-box binding"
            evidence=IEA;ISO] [GO:0071479 "cellular response to ionizing
            radiation" evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            RGD:620271 GO:GO:0005737 GO:GO:0000077 GO:GO:0005694 GO:GO:0009649
            GO:GO:0016573 GO:GO:0003700 GO:GO:0005667 GO:GO:0000978
            GO:GO:0004871 GO:GO:0000982 GO:GO:0032922 SMART:SM00086
            GO:GO:0001190 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
            GO:GO:0071479 GO:GO:0070888 GO:GO:0004402 CTD:9575 eggNOG:NOG300360
            HOGENOM:HOG000234382 HOVERGEN:HBG050997 KO:K02223 EMBL:AB019258
            EMBL:AB019259 IPI:IPI00201128 IPI:IPI00205319 RefSeq:NP_068628.1
            UniGene:Rn.205839 ProteinModelPortal:Q9WVS9 STRING:Q9WVS9
            PhosphoSite:Q9WVS9 GeneID:60447 KEGG:rno:60447 UCSC:RGD:620271
            InParanoid:Q9WVS9 NextBio:612192 ArrayExpress:Q9WVS9
            Genevestigator:Q9WVS9 GermOnline:ENSRNOG00000002175 Uniprot:Q9WVS9
        Length = 862

 Score = 445 (161.7 bits), Expect = 4.0e-41, P = 4.0e-41
 Identities = 83/125 (66%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+S+  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLESLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P++  ++S D+G  +  
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGVEESLPETAADKSQDSGSDNRI 412

Query:   136 NTIKM 140
             NT+ +
Sbjct:   413 NTVSL 417


>UNIPROTKB|Q9WVS9 [details] [associations]
            symbol:Clock "Circadian locomoter output cycles protein
            kaput" species:10116 "Rattus norvegicus" [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 RGD:620271
            GO:GO:0005737 GO:GO:0000077 GO:GO:0005694 GO:GO:0009649
            GO:GO:0016573 GO:GO:0003700 GO:GO:0005667 GO:GO:0000978
            GO:GO:0004871 GO:GO:0000982 GO:GO:0032922 SMART:SM00086
            GO:GO:0001190 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
            GO:GO:0071479 GO:GO:0070888 GO:GO:0004402 CTD:9575 eggNOG:NOG300360
            HOGENOM:HOG000234382 HOVERGEN:HBG050997 KO:K02223 EMBL:AB019258
            EMBL:AB019259 IPI:IPI00201128 IPI:IPI00205319 RefSeq:NP_068628.1
            UniGene:Rn.205839 ProteinModelPortal:Q9WVS9 STRING:Q9WVS9
            PhosphoSite:Q9WVS9 GeneID:60447 KEGG:rno:60447 UCSC:RGD:620271
            InParanoid:Q9WVS9 NextBio:612192 ArrayExpress:Q9WVS9
            Genevestigator:Q9WVS9 GermOnline:ENSRNOG00000002175 Uniprot:Q9WVS9
        Length = 862

 Score = 445 (161.7 bits), Expect = 4.0e-41, P = 4.0e-41
 Identities = 83/125 (66%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+S+  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLESLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P++  ++S D+G  +  
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGVEESLPETAADKSQDSGSDNRI 412

Query:   136 NTIKM 140
             NT+ +
Sbjct:   413 NTVSL 417


>UNIPROTKB|Q8QGQ6 [details] [associations]
            symbol:CLOCK "Circadian locomoter output cycles protein
            kaput" species:9031 "Gallus gallus" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0000077 "DNA damage checkpoint" evidence=IEA]
            [GO:0000978 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding" evidence=IEA] [GO:0000982 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0001190
            "RNA polymerase II transcription factor binding transcription
            factor activity involved in positive regulation of transcription"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
            evidence=IEA] [GO:0070888 "E-box binding" evidence=IEA] [GO:0071479
            "cellular response to ionizing radiation" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005737 GO:GO:0000077 GO:GO:0005694 GO:GO:0005667
            GO:GO:0000978 GO:GO:0004871 GO:GO:0000982 GO:GO:0032922
            SMART:SM00086 GO:GO:0001190 Gene3D:4.10.280.10 SUPFAM:SSF47459
            HSSP:P36956 GO:GO:0071479 GO:GO:0070888 EMBL:AF132531 EMBL:AF144425
            EMBL:AF246959 IPI:IPI00814237 IPI:IPI00819507 RefSeq:NP_989505.2
            UniGene:Gga.2707 ProteinModelPortal:Q8QGQ6 STRING:Q8QGQ6
            GeneID:373991 KEGG:gga:373991 CTD:9575 eggNOG:NOG300360
            HOGENOM:HOG000234382 HOVERGEN:HBG050997 InParanoid:Q8QGQ6 KO:K02223
            NextBio:20813520 ArrayExpress:Q8QGQ6 Uniprot:Q8QGQ6
        Length = 875

 Score = 445 (161.7 bits), Expect = 4.2e-41, P = 4.2e-41
 Identities = 83/125 (66%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDLD++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLDNLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P+ + ++S D+G  +  
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPEIKADKSQDSGSDNHI 412

Query:   136 NTIKM 140
             NT+ +
Sbjct:   413 NTVSL 417


>UNIPROTKB|F1P1C0 [details] [associations]
            symbol:CLOCK "Circadian locomoter output cycles protein
            kaput" species:9031 "Gallus gallus" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0000077 "DNA damage checkpoint" evidence=IEA]
            [GO:0000978 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding" evidence=IEA] [GO:0000982 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0001190
            "RNA polymerase II transcription factor binding transcription
            factor activity involved in positive regulation of transcription"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0032922 "circadian regulation of gene
            expression" evidence=IEA] [GO:0070888 "E-box binding" evidence=IEA]
            [GO:0071479 "cellular response to ionizing radiation" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005737
            GO:GO:0000077 GO:GO:0005694 GO:GO:0005667 GO:GO:0000978
            GO:GO:0004871 GO:GO:0000982 GO:GO:0032922 SMART:SM00086
            GO:GO:0001190 GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10
            SUPFAM:SSF47459 GO:GO:0071479 GO:GO:0070888 IPI:IPI00819507
            OMA:AHEKMAQ EMBL:AADN02031315 EMBL:AADN02031314
            Ensembl:ENSGALT00000022394 ArrayExpress:F1P1C0 Uniprot:F1P1C0
        Length = 877

 Score = 445 (161.7 bits), Expect = 4.2e-41, P = 4.2e-41
 Identities = 83/125 (66%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDLD++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLDNLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P+ + ++S D+G  +  
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPEIKADKSQDSGSDNHI 412

Query:   136 NTIKM 140
             NT+ +
Sbjct:   413 NTVSL 417


>UNIPROTKB|F1RVI1 [details] [associations]
            symbol:CLOCK "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0032922 "circadian regulation of gene expression"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0001190 "RNA
            polymerase II transcription factor binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=IEA] [GO:0000982 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10
            SUPFAM:SSF47459 EMBL:CU861936 Ensembl:ENSSSCT00000009755
            OMA:ANARRAW Uniprot:F1RVI1
        Length = 410

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 78/107 (72%), Positives = 87/107 (81%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDT 130
             T +YITYHQWNS+PEFIVCTH VVSY  V R +  +    EE   +T
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEV-RAERRRELGIEESLPET 398


>UNIPROTKB|F1MLT7 [details] [associations]
            symbol:CLOCK "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071479 "cellular response to ionizing radiation"
            evidence=IEA] [GO:0070888 "E-box binding" evidence=IEA] [GO:0032922
            "circadian regulation of gene expression" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0005667 "transcription factor complex" evidence=IEA]
            [GO:0001190 "RNA polymerase II transcription factor binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=IEA] [GO:0000982 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0000978 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding" evidence=IEA] [GO:0000077 "DNA damage checkpoint"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0000077 GO:GO:0005694
            GO:GO:0005667 GO:GO:0000978 GO:GO:0004871 GO:GO:0000982
            GO:GO:0032922 SMART:SM00086 GO:GO:0001190
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GO:GO:0071479 GO:GO:0070888 OMA:AHEKMAQ EMBL:DAAA02017731
            EMBL:DAAA02017732 IPI:IPI00999446 Ensembl:ENSBTAT00000061480
            Uniprot:F1MLT7
        Length = 846

 Score = 442 (160.7 bits), Expect = 7.9e-41, P = 7.9e-41
 Identities = 82/125 (65%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   294 APPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 353

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P++  ++S D+G  +  
Sbjct:   354 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKSQDSGSDNRI 413

Query:   136 NTIKM 140
             NT+ +
Sbjct:   414 NTVSL 418


>UNIPROTKB|O15516 [details] [associations]
            symbol:CLOCK "Circadian locomoter output cycles protein
            kaput" species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0004402 "histone acetyltransferase activity"
            evidence=IEA] [GO:0005694 "chromosome" evidence=IDA] [GO:0000077
            "DNA damage checkpoint" evidence=IMP] [GO:0071479 "cellular
            response to ionizing radiation" evidence=IDA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0032922 "circadian regulation of gene expression" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006357 "regulation of transcription
            from RNA polymerase II promoter" evidence=TAS] [GO:0007165 "signal
            transduction" evidence=TAS] [GO:0007623 "circadian rhythm"
            evidence=TAS] [GO:0009648 "photoperiodism" evidence=TAS]
            [GO:0005667 "transcription factor complex" evidence=IPI]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IGI] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0000982 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0000978 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding" evidence=IDA] [GO:0070888
            "E-box binding" evidence=IDA] [GO:0001190 "RNA polymerase II
            transcription factor binding transcription factor activity involved
            in positive regulation of transcription" evidence=ISS] [GO:0043231
            "intracellular membrane-bounded organelle" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005829 GO:GO:0000077
            GO:GO:0005694 GO:GO:0007165 GO:GO:0009649 GO:GO:0016573
            GO:GO:0005667 GO:GO:0000978 GO:GO:0004871 GO:GO:0000982
            GO:GO:0032922 SMART:SM00086 GO:GO:0001190 Gene3D:4.10.280.10
            SUPFAM:SSF47459 GO:GO:0071479 GO:GO:0070888
            Pathway_Interaction_DB:circadianpathway Reactome:REACT_24941
            PDB:4H10 PDBsum:4H10 GO:GO:0004402 GO:GO:0009648 CTD:9575
            eggNOG:NOG300360 HOGENOM:HOG000234382 HOVERGEN:HBG050997 KO:K02223
            EMBL:AF011568 EMBL:AH008440 EMBL:EF015897 EMBL:AB002332
            EMBL:AK291708 EMBL:BC126157 EMBL:BC126159 EMBL:AB005535
            IPI:IPI00007284 RefSeq:NP_001254772.1 RefSeq:NP_004889.1
            UniGene:Hs.436975 UniGene:Hs.689578 ProteinModelPortal:O15516
            SMR:O15516 IntAct:O15516 STRING:O15516 PhosphoSite:O15516
            PRIDE:O15516 DNASU:9575 Ensembl:ENST00000309964
            Ensembl:ENST00000381322 Ensembl:ENST00000513440 GeneID:9575
            KEGG:hsa:9575 UCSC:uc003haz.1 GeneCards:GC04M056294 HGNC:HGNC:2082
            HPA:HPA001867 HPA:HPA027565 MIM:601851 neXtProt:NX_O15516
            PharmGKB:PA26609 InParanoid:O15516 OMA:AHEKMAQ OrthoDB:EOG476JZV
            PhylomeDB:O15516 GenomeRNAi:9575 NextBio:35907 ArrayExpress:O15516
            Bgee:O15516 CleanEx:HS_CLOCK Genevestigator:O15516
            GermOnline:ENSG00000134852 Uniprot:O15516
        Length = 846

 Score = 442 (160.7 bits), Expect = 7.9e-41, P = 7.9e-41
 Identities = 82/125 (65%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P++  ++S D+G  +  
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKSQDSGSDNRI 412

Query:   136 NTIKM 140
             NT+ +
Sbjct:   413 NTVSL 417


>UNIPROTKB|Q5RAK8 [details] [associations]
            symbol:CLOCK "Circadian locomoter output cycles protein
            kaput" species:9601 "Pongo abelii" [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0005667 "transcription factor complex" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0032922 "circadian regulation of gene expression"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0005694
            GO:GO:0003677 GO:GO:0016573 GO:GO:0003700 GO:GO:0006351
            GO:GO:0006974 GO:GO:0005667 GO:GO:0004871 GO:GO:0032922
            SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
            GO:GO:0004402 CTD:9575 HOVERGEN:HBG050997 KO:K02223 EMBL:CR859007
            RefSeq:NP_001125706.1 UniGene:Pab.7567 ProteinModelPortal:Q5RAK8
            GeneID:100172630 KEGG:pon:100172630 InParanoid:Q5RAK8
            Uniprot:Q5RAK8
        Length = 846

 Score = 442 (160.7 bits), Expect = 7.9e-41, P = 7.9e-41
 Identities = 82/125 (65%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPD-SEEQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P+ + ++S D+G  +  
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELSIEESLPEIAADKSQDSGSDNRI 412

Query:   136 NTIKM 140
             NT+ +
Sbjct:   413 NTVSL 417


>UNIPROTKB|F1PSD8 [details] [associations]
            symbol:CLOCK "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071479 "cellular response to ionizing
            radiation" evidence=IEA] [GO:0070888 "E-box binding" evidence=IEA]
            [GO:0032922 "circadian regulation of gene expression" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0001190 "RNA polymerase II transcription factor
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0000982 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0000978
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding" evidence=IEA] [GO:0000077 "DNA damage checkpoint"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0000077 GO:GO:0005694
            GO:GO:0005667 GO:GO:0000978 GO:GO:0004871 GO:GO:0000982
            GO:GO:0032922 SMART:SM00086 GO:GO:0001190
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GO:GO:0071479 GO:GO:0070888 OMA:AHEKMAQ EMBL:AAEX03009082
            Ensembl:ENSCAFT00000003400 Uniprot:F1PSD8
        Length = 848

 Score = 442 (160.7 bits), Expect = 8.0e-41, P = 8.0e-41
 Identities = 82/125 (65%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   294 APPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 353

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P++  ++S D+G  +  
Sbjct:   354 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKSQDSGSDNRI 413

Query:   136 NTIKM 140
             NT+ +
Sbjct:   414 NTVSL 418


>MGI|MGI:99698 [details] [associations]
            symbol:Clock "circadian locomotor output cycles kaput"
            species:10090 "Mus musculus" [GO:0000077 "DNA damage checkpoint"
            evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding" evidence=ISO] [GO:0000982
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding transcription factor activity" evidence=IDA]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IC]
            [GO:0001190 "RNA polymerase II transcription factor binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISA;IDA] [GO:0004402
            "histone acetyltransferase activity" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005667 "transcription factor complex" evidence=ISO;IDA]
            [GO:0005694 "chromosome" evidence=ISO] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISA;IDA] [GO:0006974 "response to DNA
            damage stimulus" evidence=IEA] [GO:0007165 "signal transduction"
            evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IDA;IMP]
            [GO:0008134 "transcription factor binding" evidence=ISA]
            [GO:0016740 "transferase activity" evidence=IEA] [GO:0016746
            "transferase activity, transferring acyl groups" evidence=IEA]
            [GO:0032922 "circadian regulation of gene expression" evidence=IMP]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IGI;IC;ISO;IDA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0048511 "rhythmic
            process" evidence=IEA] [GO:0070888 "E-box binding" evidence=ISO]
            [GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            MGI:MGI:99698 GO:GO:0005829 GO:GO:0000077 GO:GO:0005694
            GO:GO:0009649 GO:GO:0016573 GO:GO:0005667 GO:GO:0000978
            GO:GO:0001077 GO:GO:0004871 GO:GO:0032922 SMART:SM00086
            GO:GO:0001190 GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10
            SUPFAM:SSF47459 GO:GO:0008134 GO:GO:0071479 GO:GO:0070888
            Reactome:REACT_109335 Reactome:REACT_24972 PDB:4F3L PDBsum:4F3L
            GO:GO:0004402 CTD:9575 eggNOG:NOG300360 HOGENOM:HOG000234382
            HOVERGEN:HBG050997 KO:K02223 OMA:AHEKMAQ OrthoDB:EOG476JZV
            EMBL:AF000998 EMBL:AF146793 IPI:IPI00230536 IPI:IPI00420596
            RefSeq:NP_031741.1 UniGene:Mm.3552 UniGene:Mm.392894
            ProteinModelPortal:O08785 SMR:O08785 DIP:DIP-30958N IntAct:O08785
            MINT:MINT-4654078 STRING:O08785 PhosphoSite:O08785 PRIDE:O08785
            DNASU:12753 Ensembl:ENSMUST00000075159 GeneID:12753 KEGG:mmu:12753
            InParanoid:O08785 NextBio:282092 Bgee:O08785 CleanEx:MM_CLOCK
            Genevestigator:O08785 GermOnline:ENSMUSG00000029238 Uniprot:O08785
        Length = 855

 Score = 442 (160.7 bits), Expect = 8.2e-41, P = 8.2e-41
 Identities = 82/125 (65%), Positives = 98/125 (78%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +P++  ++S D+G  +  
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKSQDSGSDNRI 412

Query:   136 NTIKM 140
             NT+ +
Sbjct:   413 NTVSL 417


>UNIPROTKB|Q91YA8 [details] [associations]
            symbol:Clock "Circadian locomoter output cycles protein
            kaput" species:134510 "Nannospalax judaei" [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0005667 "transcription factor complex"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0032922 "circadian regulation of
            gene expression" evidence=ISS] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005737
            GO:GO:0005694 GO:GO:0003677 GO:GO:0016573 GO:GO:0003700
            GO:GO:0006351 GO:GO:0006974 GO:GO:0005667 GO:GO:0004871
            GO:GO:0032922 SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GO:GO:0004402 HOVERGEN:HBG050997 EMBL:AJ318059 HSSP:Q99814
            ProteinModelPortal:Q91YA8 Uniprot:Q91YA8
        Length = 865

 Score = 442 (160.7 bits), Expect = 8.5e-41, P = 8.5e-41
 Identities = 82/125 (65%), Positives = 97/125 (77%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   293 APPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 352

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPDSE-EQSNDTGPGDS- 135
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+      +PD+  ++  D+G  +  
Sbjct:   353 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPDATADKGQDSGSDNRI 412

Query:   136 NTIKM 140
             NT+ +
Sbjct:   413 NTVSL 417


>ZFIN|ZDB-GENE-990630-14 [details] [associations]
            symbol:clock "clock" species:7955 "Danio rerio"
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA;IDA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0007165
            "signal transduction" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA;IDA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IGI;IMP] [GO:0046982
            "protein heterodimerization activity" evidence=NAS] [GO:0009648
            "photoperiodism" evidence=IEP;IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0007623 "circadian rhythm" evidence=IGI;IMP]
            [GO:0009416 "response to light stimulus" evidence=IGI;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0009266 "response to temperature stimulus" evidence=IDA]
            [GO:0032922 "circadian regulation of gene expression" evidence=IMP]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            ZFIN:ZDB-GENE-990630-14 GO:GO:0005737 GO:GO:0045893 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            GO:GO:0032922 SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GO:GO:0009266 GO:GO:0009648 CTD:9575 HOGENOM:HOG000234382
            HOVERGEN:HBG050997 KO:K02223 HSSP:Q99814 EMBL:AF133306
            IPI:IPI00503983 RefSeq:NP_571032.1 UniGene:Dr.81289
            ProteinModelPortal:Q9W6J4 DIP:DIP-46451N STRING:Q9W6J4 GeneID:30140
            KEGG:dre:30140 InParanoid:Q9W6J4 NextBio:20806615
            ArrayExpress:Q9W6J4 Uniprot:Q9W6J4
        Length = 893

 Score = 437 (158.9 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 81/115 (70%), Positives = 92/115 (80%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+++  CHE LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   284 APPIIGYLPFEVLGTSGYDYYHVDDLETLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 343

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVL---RRD---NNQVPD-SEEQSNDTG 131
             T +YITYHQWNS+PEFIVCTH VVSY  V    RR+       P+ S ++S D+G
Sbjct:   344 THYYITYHQWNSRPEFIVCTHTVVSYAEVRAEQRRELGIEESPPEISADKSQDSG 398


>ZFIN|ZDB-GENE-030408-3 [details] [associations]
            symbol:npas2 "neuronal PAS domain protein 2"
            species:7955 "Danio rerio" [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0007165
            "signal transduction" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA;IPI] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0009648
            "photoperiodism" evidence=IEP] [GO:0007623 "circadian rhythm"
            evidence=IGI] [GO:0009416 "response to light stimulus"
            evidence=IGI] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            ZFIN:ZDB-GENE-030408-3 GO:GO:0005737 GO:GO:0003677 GO:GO:0007623
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10
            SUPFAM:SSF47459 GO:GO:0009648 eggNOG:NOG300360 HOGENOM:HOG000234382
            HOVERGEN:HBG050997 KO:K02223 HSSP:Q99814 CTD:4862 OrthoDB:EOG444KJQ
            OMA:GHPRKMD EMBL:CU464080 EMBL:BC163256 EMBL:AB087255
            IPI:IPI00505783 RefSeq:NP_840084.1 UniGene:Dr.24959 STRING:Q8JIG3
            Ensembl:ENSDART00000014806 GeneID:352934 KEGG:dre:352934
            InParanoid:Q8JIG3 NextBio:20812676 Uniprot:Q8JIG3
        Length = 845

 Score = 432 (157.1 bits), Expect = 9.6e-40, P = 9.6e-40
 Identities = 78/106 (73%), Positives = 86/106 (81%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             A PIIGYLPFEVLGTSGYDYYHVDDL+ +  CH+ LMQ G+G SCYYRFLTKGQQWIWLQ
Sbjct:   304 ASPIIGYLPFEVLGTSGYDYYHVDDLELIAQCHKQLMQCGKGKSCYYRFLTKGQQWIWLQ 363

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSND 129
             T +YITYHQWNSKPEFIVCTH VVSY  V R +  +    EE S+D
Sbjct:   364 THYYITYHQWNSKPEFIVCTHSVVSYAEV-RAERRREFGLEESSSD 408


>ZFIN|ZDB-GENE-030408-2 [details] [associations]
            symbol:clock3 "clock homolog 3 (mouse)" species:7955
            "Danio rerio" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0009648
            "photoperiodism" evidence=IEP] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0009416 "response to light stimulus"
            evidence=IGI] [GO:0007623 "circadian rhythm" evidence=IGI]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            Pfam:PF00010 Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            ZFIN:ZDB-GENE-030408-2 GO:GO:0005737 GO:GO:0003677 GO:GO:0007623
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10
            SUPFAM:SSF47459 GO:GO:0009648 eggNOG:NOG300360 HOGENOM:HOG000234382
            HOVERGEN:HBG050997 OrthoDB:EOG476JZV EMBL:BX901913 EMBL:BX548248
            EMBL:CR926462 EMBL:BC162682 IPI:IPI00483024 UniGene:Dr.86747
            STRING:B3DH92 Ensembl:ENSDART00000103119 Ensembl:ENSDART00000133959
            Uniprot:B3DH92
        Length = 820

 Score = 431 (156.8 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 78/107 (72%), Positives = 86/107 (80%)

Query:    19 IYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQ 78
             + D  APPIIGY+PFEVLGTSGYDYYHVDDL S+  CHE LMQ G+G SCYYRFLTKGQQ
Sbjct:   277 LLDHRAPPIIGYMPFEVLGTSGYDYYHVDDLHSLAKCHEHLMQFGKGKSCYYRFLTKGQQ 336

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEE 125
             WIWLQT +YITYHQWNS+PEFIVCTH VVSY  V R +  +    EE
Sbjct:   337 WIWLQTNYYITYHQWNSRPEFIVCTHTVVSYAEV-RAERRREMGIEE 382


>UNIPROTKB|F1P5G3 [details] [associations]
            symbol:NPAS2 "Neuronal PAS domain-containing protein 2"
            species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005737
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 SMART:SM00086 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 IPI:IPI00575691
            EMBL:AADN02017717 Ensembl:ENSGALT00000027080 ArrayExpress:F1P5G3
            Uniprot:F1P5G3
        Length = 815

 Score = 430 (156.4 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 78/106 (73%), Positives = 87/106 (82%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYH+DDL+ +  CHE LMQ G+G SC YRFLTKGQQWIWLQ
Sbjct:   268 APPIIGYLPFEVLGTSGYDYYHIDDLELLARCHEHLMQFGKGKSCCYRFLTKGQQWIWLQ 327

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSND 129
             T +YITYHQWNSKPEFIVCTH VVSY +V R +  Q    EE S++
Sbjct:   328 THYYITYHQWNSKPEFIVCTHMVVSYADV-RVERRQEMGLEEVSSE 372


>UNIPROTKB|Q5ZQU2 [details] [associations]
            symbol:NPAS2 "Neuronal PAS domain-containing protein 2"
            species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0048511 "rhythmic process" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005737
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0048511
            GO:GO:0005667 GO:GO:0004871 SMART:SM00086 Gene3D:4.10.280.10
            SUPFAM:SSF47459 eggNOG:NOG300360 HOGENOM:HOG000234382
            HOVERGEN:HBG050997 HSSP:Q99814 EMBL:AF396828 EMBL:AF193071
            IPI:IPI00575691 RefSeq:NP_001025713.1 UniGene:Gga.235
            ProteinModelPortal:Q5ZQU2 STRING:Q5ZQU2 GeneID:395433
            KEGG:gga:395433 CTD:4862 KO:K09026 NextBio:20815517 Uniprot:Q5ZQU2
        Length = 815

 Score = 430 (156.4 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 78/106 (73%), Positives = 87/106 (82%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYH+DDL+ +  CHE LMQ G+G SC YRFLTKGQQWIWLQ
Sbjct:   268 APPIIGYLPFEVLGTSGYDYYHIDDLELLARCHEHLMQFGKGKSCCYRFLTKGQQWIWLQ 327

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSND 129
             T +YITYHQWNSKPEFIVCTH VVSY +V R +  Q    EE S++
Sbjct:   328 THYYITYHQWNSKPEFIVCTHMVVSYADV-RVERRQEMGLEEVSSE 372


>UNIPROTKB|E1BZV0 [details] [associations]
            symbol:NPAS2 "Neuronal PAS domain-containing protein 2"
            species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0042745 "circadian
            sleep/wake cycle" evidence=IEA] [GO:0045475 "locomotor rhythm"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0051879 "Hsp90
            protein binding" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 SMART:SM00086 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 OMA:KFVGNFR EMBL:AADN02017717
            IPI:IPI00823351 Ensembl:ENSGALT00000036585 ArrayExpress:E1BZV0
            Uniprot:E1BZV0
        Length = 817

 Score = 430 (156.4 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 78/106 (73%), Positives = 87/106 (82%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYH+DDL+ +  CHE LMQ G+G SC YRFLTKGQQWIWLQ
Sbjct:   270 APPIIGYLPFEVLGTSGYDYYHIDDLELLARCHEHLMQFGKGKSCCYRFLTKGQQWIWLQ 329

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSND 129
             T +YITYHQWNSKPEFIVCTH VVSY +V R +  Q    EE S++
Sbjct:   330 THYYITYHQWNSKPEFIVCTHMVVSYADV-RVERRQEMGLEEVSSE 374


>UNIPROTKB|J9P4Q7 [details] [associations]
            symbol:NPAS2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005667 "transcription factor
            complex" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AAEX03007435
            Ensembl:ENSCAFT00000047996 Uniprot:J9P4Q7
        Length = 668

 Score = 420 (152.9 bits), Expect = 6.8e-39, P = 6.8e-39
 Identities = 76/101 (75%), Positives = 83/101 (82%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYH+DDL+ +  CH+ LMQ G+G SC YRFLTKGQQWIWLQ
Sbjct:   259 APPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQ 318

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSY--VNVLRRDNNQVPD 122
             T +YITYHQWNSKPEFIVCTH VVSY  V V RR    + D
Sbjct:   319 THYYITYHQWNSKPEFIVCTHSVVSYADVRVERRQELALED 359


>UNIPROTKB|F6QL92 [details] [associations]
            symbol:NPAS2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051879 "Hsp90 protein binding" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045475 "locomotor
            rhythm" evidence=IEA] [GO:0042745 "circadian sleep/wake cycle"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 GO:GO:0045475 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GO:GO:0042745 OMA:KFVGNFR EMBL:DAAA02030201 IPI:IPI00706386
            Ensembl:ENSBTAT00000026257 Uniprot:F6QL92
        Length = 794

 Score = 421 (153.3 bits), Expect = 1.2e-38, P = 1.2e-38
 Identities = 77/101 (76%), Positives = 83/101 (82%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+ +  CH+ LMQ G+G SC YRFLTKGQQWIWLQ
Sbjct:   258 APPIIGYLPFEVLGTSGYDYYHVDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQ 317

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSY--VNVLRRDNNQVPD 122
             T +YITYHQWNSKPEFIVCTH VVSY  V V RR    + D
Sbjct:   318 THYYITYHQWNSKPEFIVCTHSVVSYAEVRVERRQELALED 358


>UNIPROTKB|F1STF9 [details] [associations]
            symbol:NPAS2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 OMA:KFVGNFR EMBL:CU407191
            EMBL:CU972480 Ensembl:ENSSSCT00000008948 Uniprot:F1STF9
        Length = 796

 Score = 421 (153.3 bits), Expect = 1.2e-38, P = 1.2e-38
 Identities = 77/101 (76%), Positives = 83/101 (82%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYHVDDL+ +  CH+ LMQ G+G SC YRFLTKGQQWIWLQ
Sbjct:   268 APPIIGYLPFEVLGTSGYDYYHVDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQ 327

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSY--VNVLRRDNNQVPD 122
             T +YITYHQWNSKPEFIVCTH VVSY  V V RR    + D
Sbjct:   328 THYYITYHQWNSKPEFIVCTHSVVSYAEVRVERRQELALED 368


>UNIPROTKB|Q99743 [details] [associations]
            symbol:NPAS2 "Neuronal PAS domain-containing protein 2"
            species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0042745 "circadian sleep/wake
            cycle" evidence=IEA] [GO:0045475 "locomotor rhythm" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IPI] [GO:0005667 "transcription
            factor complex" evidence=IPI] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IGI]
            [GO:0007417 "central nervous system development" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0044255 "cellular lipid
            metabolic process" evidence=TAS] [GO:0044281 "small molecule
            metabolic process" evidence=TAS] [GO:0051879 "Hsp90 protein
            binding" evidence=IDA] Reactome:REACT_111217 InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005829
            GO:GO:0044281 GO:GO:0003677 GO:GO:0045944 GO:GO:0007417
            GO:GO:0003700 GO:GO:0044255 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 MIM:608516 GO:GO:0045475 SMART:SM00086
            TIGRFAMs:TIGR00229 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0051879
            Pathway_Interaction_DB:circadianpathway Reactome:REACT_24941
            eggNOG:NOG300360 HOVERGEN:HBG050997 CTD:4862 KO:K09026 EMBL:U77970
            EMBL:AC016738 EMBL:AC092168 EMBL:AC106891 EMBL:BC051351
            EMBL:BC072383 EMBL:U51625 IPI:IPI00956556 RefSeq:NP_002509.2
            UniGene:Hs.156832 UniGene:Hs.705895 ProteinModelPortal:Q99743
            SMR:Q99743 IntAct:Q99743 STRING:Q99743 PhosphoSite:Q99743
            DMDM:311033423 PaxDb:Q99743 PRIDE:Q99743 Ensembl:ENST00000335681
            GeneID:4862 KEGG:hsa:4862 UCSC:uc002tap.1 GeneCards:GC02P101436
            H-InvDB:HIX0200274 HGNC:HGNC:7895 HPA:HPA019674 MIM:603347
            neXtProt:NX_Q99743 PharmGKB:PA31696 InParanoid:Q99743
            OrthoDB:EOG444KJQ PhylomeDB:Q99743 ChiTaRS:NPAS2 GenomeRNAi:4862
            NextBio:18730 ArrayExpress:Q99743 Bgee:Q99743 CleanEx:HS_NPAS2
            Genevestigator:Q99743 GermOnline:ENSG00000170485 GO:GO:0042745
            Uniprot:Q99743
        Length = 824

 Score = 421 (153.3 bits), Expect = 1.4e-38, P = 1.4e-38
 Identities = 76/106 (71%), Positives = 85/106 (80%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYH+DDL+ +  CH+ LMQ G+G SC YRFLTKGQQWIWLQ
Sbjct:   268 APPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQ 327

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSY--VNVLRRDNNQVPDSEEQS 127
             T +YITYHQWNSKPEFIVCTH VVSY  V V RR    + D   ++
Sbjct:   328 THYYITYHQWNSKPEFIVCTHSVVSYADVRVERRQELALEDPPSEA 373


>RGD|1309681 [details] [associations]
            symbol:Npas2 "neuronal PAS domain protein 2" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA;ISO]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0042745 "circadian
            sleep/wake cycle" evidence=IEA;ISO] [GO:0045475 "locomotor rhythm"
            evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0051879 "Hsp90
            protein binding" evidence=IEA;ISO] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 RGD:1309681 GO:GO:0005737
            GO:GO:0003677 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0004871 GO:GO:0045475 SMART:SM00086
            TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10
            SUPFAM:SSF47459 CTD:4862 KO:K09026 GO:GO:0042745 IPI:IPI00870127
            RefSeq:NP_001101684.2 UniGene:Rn.8285 Ensembl:ENSRNOT00000059571
            GeneID:316351 KEGG:rno:316351 UCSC:RGD:1309681 NextBio:670757
            Uniprot:F1MAG2
        Length = 816

 Score = 420 (152.9 bits), Expect = 1.7e-38, P = 1.7e-38
 Identities = 76/101 (75%), Positives = 83/101 (82%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYH+DDL+ +  CH+ LMQ G+G SC YRFLTKGQQWIWLQ
Sbjct:   268 APPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQ 327

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSY--VNVLRRDNNQVPD 122
             T +YITYHQWNSKPEFIVCTH VVSY  V V RR    + D
Sbjct:   328 THYYITYHQWNSKPEFIVCTHSVVSYADVRVERRQELALED 368


>UNIPROTKB|F1PPU8 [details] [associations]
            symbol:NPAS2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005667 "transcription factor
            complex" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 OMA:KFVGNFR EMBL:AAEX03007435
            Ensembl:ENSCAFT00000003487 Uniprot:F1PPU8
        Length = 818

 Score = 420 (152.9 bits), Expect = 1.7e-38, P = 1.7e-38
 Identities = 76/101 (75%), Positives = 83/101 (82%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYH+DDL+ +  CH+ LMQ G+G SC YRFLTKGQQWIWLQ
Sbjct:   268 APPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQ 327

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSY--VNVLRRDNNQVPD 122
             T +YITYHQWNSKPEFIVCTH VVSY  V V RR    + D
Sbjct:   328 THYYITYHQWNSKPEFIVCTHSVVSYADVRVERRQELALED 368


>UNIPROTKB|F5H027 [details] [associations]
            symbol:NPAS2 "Neuronal PAS domain-containing protein 2"
            species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005737
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229 Gene3D:4.10.280.10
            SUPFAM:SSF47459 EMBL:AC016738 EMBL:AC092168 EMBL:AC106891
            HGNC:HGNC:7895 ChiTaRS:NPAS2 IPI:IPI00916781
            ProteinModelPortal:F5H027 SMR:F5H027 Ensembl:ENST00000542504
            UCSC:uc010yvt.1 OMA:KFVGNFR ArrayExpress:F5H027 Bgee:F5H027
            Uniprot:F5H027
        Length = 889

 Score = 421 (153.3 bits), Expect = 1.7e-38, P = 1.7e-38
 Identities = 76/106 (71%), Positives = 85/106 (80%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGYDYYH+DDL+ +  CH+ LMQ G+G SC YRFLTKGQQWIWLQ
Sbjct:   333 APPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQ 392

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSY--VNVLRRDNNQVPDSEEQS 127
             T +YITYHQWNSKPEFIVCTH VVSY  V V RR    + D   ++
Sbjct:   393 THYYITYHQWNSKPEFIVCTHSVVSYADVRVERRQELALEDPPSEA 438


>MGI|MGI:109232 [details] [associations]
            symbol:Npas2 "neuronal PAS domain protein 2" species:10090
            "Mus musculus" [GO:0003677 "DNA binding" evidence=ISO] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0042745 "circadian sleep/wake
            cycle" evidence=IMP] [GO:0045475 "locomotor rhythm" evidence=IMP]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0048511 "rhythmic process"
            evidence=IEA] [GO:0051879 "Hsp90 protein binding" evidence=ISO]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            MGI:MGI:109232 GO:GO:0005829 GO:GO:0005654 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            GO:GO:0045475 SMART:SM00086 TIGRFAMs:TIGR00229 Gene3D:4.10.280.10
            SUPFAM:SSF47459 Reactome:REACT_109335 Reactome:REACT_24972
            eggNOG:NOG300360 HOGENOM:HOG000234382 HOVERGEN:HBG050997 CTD:4862
            KO:K09026 OrthoDB:EOG444KJQ GO:GO:0042745 EMBL:U77969
            IPI:IPI00625137 RefSeq:NP_032745.2 UniGene:Mm.2380
            ProteinModelPortal:P97460 SMR:P97460 STRING:P97460
            PhosphoSite:P97460 PRIDE:P97460 GeneID:18143 KEGG:mmu:18143
            UCSC:uc007atd.2 InParanoid:P97460 NextBio:293396 CleanEx:MM_NPAS2
            Genevestigator:P97460 GermOnline:ENSMUSG00000026077 Uniprot:P97460
        Length = 816

 Score = 415 (151.1 bits), Expect = 5.9e-38, P = 5.9e-38
 Identities = 75/101 (74%), Positives = 83/101 (82%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             APPIIGYLPFEVLGTSGY+YYH+DDL+ +  CH+ LMQ G+G SC YRFLTKGQQWIWLQ
Sbjct:   268 APPIIGYLPFEVLGTSGYNYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQ 327

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSY--VNVLRRDNNQVPD 122
             T +YITYHQWNSKPEFIVCTH VVSY  V V RR    + D
Sbjct:   328 THYYITYHQWNSKPEFIVCTHSVVSYADVRVERRQELALED 368


>UNIPROTKB|H7BZA3 [details] [associations]
            symbol:NPAS2 "Neuronal PAS domain-containing protein 2"
            species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005737
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229 Gene3D:4.10.280.10
            SUPFAM:SSF47459 EMBL:AC016738 EMBL:AC092168 EMBL:AC106891
            HGNC:HGNC:7895 ChiTaRS:NPAS2 ProteinModelPortal:H7BZA3
            Ensembl:ENST00000448812 Uniprot:H7BZA3
        Length = 258

 Score = 256 (95.2 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 48/66 (72%), Positives = 52/66 (78%)

Query:    59 LMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSY--VNVLRRD 116
             +MQ G+G SC YRFLTKGQQWIWLQT +YITYHQWNSKPEFIVCTH VVSY  V V RR 
Sbjct:   190 VMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYADVRVERRQ 249

Query:   117 NNQVPD 122
                + D
Sbjct:   250 ELALED 255

 Score = 37 (18.1 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query:    17 STIY--DLVAPPIIGYLPFEVL 36
             S IY  D + P ++G+LP +V+
Sbjct:    95 SIIYVSDSITP-LLGHLPSDVM 115


>FB|FBgn0003513 [details] [associations]
            symbol:ss "spineless" species:7227 "Drosophila melanogaster"
            [GO:0005634 "nucleus" evidence=ISS;IDA;NAS] [GO:0006355 "regulation
            of transcription, DNA-dependent" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS;NAS] [GO:0003677 "DNA binding" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=NAS] [GO:0007469 "antennal development" evidence=IEP]
            [GO:0048800 "antennal morphogenesis" evidence=IMP] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0010092 "specification of organ
            identity" evidence=IMP] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0046982 "protein heterodimerization activity" evidence=IPI]
            [GO:0036011 "imaginal disc-derived leg segmentation" evidence=IMP]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IDA]
            [GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP]
            InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            EMBL:AE014297 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
            GO:GO:0000122 GO:GO:0004871 GO:GO:0048814 SMART:SM00086
            TIGRFAMs:TIGR00229 GO:GO:0036011 GO:GO:0010092 GO:GO:0048800
            RefSeq:NP_001163629.2 RefSeq:NP_001247140.1 UniGene:Dm.3249
            ProteinModelPortal:E1JIM6 SMR:E1JIM6 GeneID:41988
            KEGG:dme:Dmel_CG6993 CTD:41988 FlyBase:FBgn0003513 GenomeRNAi:41988
            NextBio:826600 Bgee:E1JIM6 Uniprot:E1JIM6
        Length = 1048

 Score = 180 (68.4 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
 Identities = 33/79 (41%), Positives = 46/79 (58%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             I+GY   E++   GYD  H DDL  V + H+ L++ G      YR+  K  +W WLQT  
Sbjct:   291 ILGYADAELVNMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRYQKKDGEWQWLQTSS 350

Query:    87 YITYHQWNSKPEFIVCTHR 105
              + Y   NSKP+F++CTHR
Sbjct:   351 RLVYK--NSKPDFVICTHR 367

 Score = 38 (18.4 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
 Identities = 6/15 (40%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+LV
Sbjct:   152 FHQSDIVHQSVYELV 166


>ZFIN|ZDB-GENE-060607-11 [details] [associations]
            symbol:epas1b "endothelial PAS domain protein 1b"
            species:7955 "Danio rerio" [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0051402 "neuron apoptotic process"
            evidence=IGI] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 ZFIN:ZDB-GENE-060607-11 GO:GO:0005634
            GO:GO:0006355 GO:GO:0003677 GO:GO:0051402 GO:GO:0006351
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            eggNOG:NOG289264 HOGENOM:HOG000234306 HOVERGEN:HBG060456
            OrthoDB:EOG4XPQF6 InterPro:IPR014887 InterPro:IPR021537
            Pfam:PF11413 Pfam:PF08778 GeneTree:ENSGT00650000093281
            EMBL:BX248102 EMBL:BC163440 IPI:IPI00742526 UniGene:Dr.83091
            STRING:B3DJD1 Ensembl:ENSDART00000080382 OMA:YNSCPPR Uniprot:B3DJD1
        Length = 834

 Score = 184 (69.8 bits), Expect = 4.1e-13, P = 4.1e-13
 Identities = 36/96 (37%), Positives = 56/96 (58%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     ++GY P ++LG S Y++YH  D ++V   H+ L  KG+  S  YR L 
Sbjct:   249 MKYTYCDERVTELMGYNPEDLLGRSAYEFYHALDAENVTKSHQNLCTKGQAVSGQYRMLA 308

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             K   ++W++TR  + Y+  NS+P+ IVC + V+S V
Sbjct:   309 KNGGYVWVETRGTVIYNSRNSQPQCIVCVNYVLSDV 344


>UNIPROTKB|F1PZ54 [details] [associations]
            symbol:HIF1A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001321 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            SUPFAM:SSF47459 InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413
            Pfam:PF08778 GeneTree:ENSGT00650000093281 CTD:3091 KO:K08268
            OMA:QNAQRKR EMBL:AAEX03005770 RefSeq:XP_003639249.1
            Ensembl:ENSCAFT00000024897 GeneID:480348 KEGG:cfa:480348
            Uniprot:F1PZ54
        Length = 823

 Score = 175 (66.7 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 349

 Score = 33 (16.7 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query:   126 QSNDTGPGDSNTI 138
             +SN T P  ++TI
Sbjct:   584 ESNSTSPQSASTI 596


>UNIPROTKB|F1S978 [details] [associations]
            symbol:ARNTL "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0051879 "Hsp90 protein binding" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            [GO:0043425 "bHLH transcription factor binding" evidence=IEA]
            [GO:0042176 "regulation of protein catabolic process" evidence=IEA]
            [GO:0032922 "circadian regulation of gene expression" evidence=IEA]
            [GO:0017162 "aryl hydrocarbon receptor binding" evidence=IEA]
            [GO:0016604 "nuclear body" evidence=IEA] [GO:0005667 "transcription
            factor complex" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0001190 "RNA polymerase II transcription factor
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0000982 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0000060
            "protein import into nucleus, translocation" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR013655 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610 GO:GO:0005737
            GO:GO:0045944 GO:GO:0003700 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            EMBL:CU914667 Ensembl:ENSSSCT00000014634 Uniprot:F1S978
        Length = 302

 Score = 172 (65.6 bits), Expect = 8.9e-13, P = 8.9e-13
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:    81 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 139

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
             +I L++R++   + W  + E+IV T+ VV   NVL   +   P
Sbjct:   140 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFP 181


>ZFIN|ZDB-GENE-000509-2 [details] [associations]
            symbol:arntl2 "aryl hydrocarbon receptor nuclear
            translocator-like 2" species:7955 "Danio rerio" [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0007165 "signal transduction" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0009648 "photoperiodism" evidence=IEP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0009416 "response
            to light stimulus" evidence=IGI] [GO:0007623 "circadian rhythm"
            evidence=IGI] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 ZFIN:ZDB-GENE-000509-2
            GO:GO:0005737 GO:GO:0003677 GO:GO:0007623 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005667 GO:GO:0004871 SMART:SM00086
            TIGRFAMs:TIGR00229 HOGENOM:HOG000234379 Gene3D:4.10.280.10
            SUPFAM:SSF47459 HOVERGEN:HBG107503 OrthoDB:EOG4DFPNB GO:GO:0009648
            eggNOG:NOG285764 EMBL:BC128806 IPI:IPI00482035 UniGene:Dr.81323
            ProteinModelPortal:A1A5T9 InParanoid:A1A5T9 ArrayExpress:A1A5T9
            Uniprot:A1A5T9
        Length = 631

 Score = 178 (67.7 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 46/131 (35%), Positives = 71/131 (54%)

Query:     5 KPVTFCMSDLMNS--TIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQK 62
             KP  F     M+   T  D  A  I+GYLP E+LGTS Y+Y+H+DDL  +   H  +++ 
Sbjct:   350 KPTEFVTRYAMDGKFTFVDQRATTILGYLPQELLGTSCYEYFHLDDLPHLAERHRKVLRS 409

Query:    63 GEG--TSCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVL--RRDNN 118
              E   T+CY +F TK   ++ LQ++++   + W  + E+IV T+ VVS  +      D  
Sbjct:   410 KEKIETNCY-KFKTKYGSFVNLQSQWFSFINPWTKEVEYIVSTNTVVSGKSNPGGSGDKA 468

Query:   119 QVPDSEEQSND 129
             + P S + S D
Sbjct:   469 EQPSSSKASED 479


>UNIPROTKB|F1LT63 [details] [associations]
            symbol:Hif1a "Hypoxia-inducible factor 1-alpha"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001321
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            RGD:61928 GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            IPI:IPI00339106 Ensembl:ENSRNOT00000012105 ArrayExpress:F1LT63
            Uniprot:F1LT63
        Length = 827

 Score = 178 (67.7 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 38/114 (33%), Positives = 66/114 (57%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   251 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 310

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTIKM 140
              + Y+  NS+P+ IVC + VVS   +++ D   +   ++  +   P +S+ +KM
Sbjct:   311 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD--LIFSLQQTESVLKPVESSDMKM 360


>UNIPROTKB|D4A8P8 [details] [associations]
            symbol:Hif1a "Hypoxia-inducible factor 1-alpha"
            species:10116 "Rattus norvegicus" [GO:0000988 "protein binding
            transcription factor activity" evidence=IEA] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0001525
            "angiogenesis" evidence=IEA] [GO:0001755 "neural crest cell
            migration" evidence=IEA] [GO:0001837 "epithelial to mesenchymal
            transition" evidence=IEA] [GO:0001892 "embryonic placenta
            development" evidence=IEA] [GO:0001922 "B-1 B cell homeostasis"
            evidence=IEA] [GO:0001947 "heart looping" evidence=IEA] [GO:0002052
            "positive regulation of neuroblast proliferation" evidence=IEA]
            [GO:0002248 "connective tissue replacement involved in inflammatory
            response wound healing" evidence=IEA] [GO:0003151 "outflow tract
            morphogenesis" evidence=IEA] [GO:0003208 "cardiac ventricle
            morphogenesis" evidence=IEA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006089 "lactate metabolic process"
            evidence=IEA] [GO:0006110 "regulation of glycolysis" evidence=IEA]
            [GO:0006879 "cellular iron ion homeostasis" evidence=IEA]
            [GO:0007595 "lactation" evidence=IEA] [GO:0008134 "transcription
            factor binding" evidence=IEA] [GO:0008542 "visual learning"
            evidence=IEA] [GO:0010573 "vascular endothelial growth factor
            production" evidence=IEA] [GO:0010575 "positive regulation vascular
            endothelial growth factor production" evidence=IEA] [GO:0010634
            "positive regulation of epithelial cell migration" evidence=IEA]
            [GO:0010870 "positive regulation of receptor biosynthetic process"
            evidence=IEA] [GO:0014850 "response to muscle activity"
            evidence=IEA] [GO:0019896 "axon transport of mitochondrion"
            evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
            [GO:0021502 "neural fold elevation formation" evidence=IEA]
            [GO:0021987 "cerebral cortex development" evidence=IEA] [GO:0030502
            "negative regulation of bone mineralization" evidence=IEA]
            [GO:0030949 "positive regulation of vascular endothelial growth
            factor receptor signaling pathway" evidence=IEA] [GO:0031625
            "ubiquitin protein ligase binding" evidence=IEA] [GO:0032007
            "negative regulation of TOR signaling cascade" evidence=IEA]
            [GO:0032364 "oxygen homeostasis" evidence=IEA] [GO:0032909
            "regulation of transforming growth factor beta2 production"
            evidence=IEA] [GO:0032963 "collagen metabolic process"
            evidence=IEA] [GO:0035035 "histone acetyltransferase binding"
            evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IEA]
            [GO:0035774 "positive regulation of insulin secretion involved in
            cellular response to glucose stimulus" evidence=IEA] [GO:0042541
            "hemoglobin biosynthetic process" evidence=IEA] [GO:0042593
            "glucose homeostasis" evidence=IEA] [GO:0042826 "histone
            deacetylase binding" evidence=IEA] [GO:0043524 "negative regulation
            of neuron apoptotic process" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0043619
            "regulation of transcription from RNA polymerase II promoter in
            response to oxidative stress" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0045648 "positive regulation of erythrocyte differentiation"
            evidence=IEA] [GO:0045926 "negative regulation of growth"
            evidence=IEA] [GO:0046716 "muscle cell homeostasis" evidence=IEA]
            [GO:0046886 "positive regulation of hormone biosynthetic process"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0048546 "digestive tract morphogenesis"
            evidence=IEA] [GO:0050790 "regulation of catalytic activity"
            evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
            [GO:0051541 "elastin metabolic process" evidence=IEA] [GO:0051879
            "Hsp90 protein binding" evidence=IEA] [GO:0060574 "intestinal
            epithelial cell maturation" evidence=IEA] [GO:0061030 "epithelial
            cell differentiation involved in mammary gland alveolus
            development" evidence=IEA] [GO:0061298 "retina vasculature
            development in camera-type eye" evidence=IEA] [GO:0061419 "positive
            regulation of transcription from RNA polymerase II promoter in
            response to hypoxia" evidence=IEA] [GO:0071347 "cellular response
            to interleukin-1" evidence=IEA] [GO:0071542 "dopaminergic neuron
            differentiation" evidence=IEA] [GO:2001054 "negative regulation of
            mesenchymal cell apoptotic process" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001321 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR01080 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 RGD:61928 GO:GO:0005737
            GO:GO:0021987 GO:GO:0005730 GO:GO:0035774 GO:GO:0001755
            GO:GO:0071542 GO:GO:0006110 GO:GO:0043565 GO:GO:0008542
            GO:GO:0071456 GO:GO:0043524 GO:GO:0010575 GO:GO:0050790
            GO:GO:0001525 GO:GO:0042593 GO:GO:0032007 GO:GO:0006879
            GO:GO:0005667 GO:GO:0003705 GO:GO:0001077 GO:GO:0044212
            GO:GO:0004871 GO:GO:0046716 GO:GO:0009434 GO:GO:0045926
            GO:GO:0019896 GO:GO:0045648 GO:GO:0061298 GO:GO:0051216
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0001947
            GO:GO:0014850 GO:GO:0001837 GO:GO:0030949 GO:GO:0071347
            GO:GO:0003151 GO:GO:0007595 GO:GO:0010634 GO:GO:0001892
            GO:GO:0046886 GO:GO:0043619 GO:GO:0002052 GO:GO:0035162
            GO:GO:0048546 GO:GO:0030502 GO:GO:0042541 GO:GO:0000988
            GO:GO:0006089 GO:GO:0010870 GO:GO:0032364 InterPro:IPR014887
            InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            GeneTree:ENSGT00650000093281 GO:GO:0061030 GO:GO:0003208
            OrthoDB:EOG40CHGP GO:GO:0001922 GO:GO:0032963 GO:GO:0002248
            GO:GO:0051541 GO:GO:0060574 GO:GO:2001054 GO:GO:0021502
            GO:GO:0032909 GO:GO:0010573 IPI:IPI00557648
            Ensembl:ENSRNOT00000049725 ArrayExpress:D4A8P8 Uniprot:D4A8P8
        Length = 828

 Score = 178 (67.7 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 38/114 (33%), Positives = 66/114 (57%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   263 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 322

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTIKM 140
              + Y+  NS+P+ IVC + VVS   +++ D   +   ++  +   P +S+ +KM
Sbjct:   323 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD--LIFSLQQTESVLKPVESSDMKM 372


>MGI|MGI:106918 [details] [associations]
            symbol:Hif1a "hypoxia inducible factor 1, alpha subunit"
            species:10090 "Mus musculus" [GO:0000988 "protein binding
            transcription factor activity" evidence=ISO] [GO:0001076 "RNA
            polymerase II transcription factor binding transcription factor
            activity" evidence=IPI] [GO:0001077 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=IDA] [GO:0001525 "angiogenesis"
            evidence=IMP] [GO:0001568 "blood vessel development" evidence=IMP]
            [GO:0001666 "response to hypoxia" evidence=IGI;ISO;IMP;IDA]
            [GO:0001755 "neural crest cell migration" evidence=IMP] [GO:0001837
            "epithelial to mesenchymal transition" evidence=IMP] [GO:0001892
            "embryonic placenta development" evidence=IGI;IMP] [GO:0001922 "B-1
            B cell homeostasis" evidence=IMP] [GO:0001944 "vasculature
            development" evidence=IGI] [GO:0001947 "heart looping"
            evidence=IMP] [GO:0002052 "positive regulation of neuroblast
            proliferation" evidence=IGI] [GO:0002248 "connective tissue
            replacement involved in inflammatory response wound healing"
            evidence=IMP] [GO:0003151 "outflow tract morphogenesis"
            evidence=IMP] [GO:0003208 "cardiac ventricle morphogenesis"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=IGI;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISO;IDA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=ISO] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription
            factor complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0006089 "lactate metabolic process" evidence=IMP] [GO:0006110
            "regulation of glycolysis" evidence=IGI] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISO;IDA]
            [GO:0006879 "cellular iron ion homeostasis" evidence=IMP]
            [GO:0007165 "signal transduction" evidence=ISO] [GO:0007595
            "lactation" evidence=IMP] [GO:0008134 "transcription factor
            binding" evidence=ISO] [GO:0008284 "positive regulation of cell
            proliferation" evidence=ISO] [GO:0008542 "visual learning"
            evidence=IMP] [GO:0010468 "regulation of gene expression"
            evidence=ISO] [GO:0010573 "vascular endothelial growth factor
            production" evidence=ISO] [GO:0010575 "positive regulation vascular
            endothelial growth factor production" evidence=ISO] [GO:0010634
            "positive regulation of epithelial cell migration" evidence=IMP]
            [GO:0010870 "positive regulation of receptor biosynthetic process"
            evidence=ISO] [GO:0014850 "response to muscle activity"
            evidence=IMP] [GO:0019896 "axon transport of mitochondrion"
            evidence=ISO] [GO:0019899 "enzyme binding" evidence=ISO]
            [GO:0019901 "protein kinase binding" evidence=ISO] [GO:0021502
            "neural fold elevation formation" evidence=IMP] [GO:0021987
            "cerebral cortex development" evidence=IMP] [GO:0030154 "cell
            differentiation" evidence=IGI;IMP] [GO:0030502 "negative regulation
            of bone mineralization" evidence=IMP] [GO:0030949 "positive
            regulation of vascular endothelial growth factor receptor signaling
            pathway" evidence=IMP] [GO:0031514 "motile cilium" evidence=IDA]
            [GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
            [GO:0032007 "negative regulation of TOR signaling cascade"
            evidence=IMP] [GO:0032364 "oxygen homeostasis" evidence=ISO;IMP]
            [GO:0032403 "protein complex binding" evidence=ISO] [GO:0032909
            "regulation of transforming growth factor beta2 production"
            evidence=ISO] [GO:0032963 "collagen metabolic process"
            evidence=IMP] [GO:0034244 "negative regulation of transcription
            elongation from RNA polymerase II promoter" evidence=ISO]
            [GO:0035035 "histone acetyltransferase binding" evidence=ISO]
            [GO:0035162 "embryonic hemopoiesis" evidence=IMP] [GO:0035774
            "positive regulation of insulin secretion involved in cellular
            response to glucose stimulus" evidence=IMP] [GO:0042127 "regulation
            of cell proliferation" evidence=IMP] [GO:0042541 "hemoglobin
            biosynthetic process" evidence=IMP] [GO:0042593 "glucose
            homeostasis" evidence=IMP] [GO:0042826 "histone deacetylase
            binding" evidence=IPI] [GO:0042981 "regulation of apoptotic
            process" evidence=IMP] [GO:0043065 "positive regulation of
            apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
            of apoptotic process" evidence=ISO;IMP] [GO:0043524 "negative
            regulation of neuron apoptotic process" evidence=IMP] [GO:0043565
            "sequence-specific DNA binding" evidence=ISO;IDA] [GO:0043619
            "regulation of transcription from RNA polymerase II promoter in
            response to oxidative stress" evidence=ISO;IMP] [GO:0044212
            "transcription regulatory region DNA binding" evidence=ISO]
            [GO:0045648 "positive regulation of erythrocyte differentiation"
            evidence=IMP] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0045906 "negative regulation of
            vasoconstriction" evidence=ISO] [GO:0045926 "negative regulation of
            growth" evidence=IMP] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter"
            evidence=ISO;IGI;IMP;IDA] [GO:0046716 "muscle cell homeostasis"
            evidence=IMP] [GO:0046886 "positive regulation of hormone
            biosynthetic process" evidence=ISO] [GO:0046982 "protein
            heterodimerization activity" evidence=ISO] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0048514 "blood vessel
            morphogenesis" evidence=IMP] [GO:0048546 "digestive tract
            morphogenesis" evidence=IMP] [GO:0048661 "positive regulation of
            smooth muscle cell proliferation" evidence=ISO] [GO:0050790
            "regulation of catalytic activity" evidence=IMP] [GO:0051216
            "cartilage development" evidence=IMP] [GO:0051541 "elastin
            metabolic process" evidence=IMP] [GO:0051879 "Hsp90 protein
            binding" evidence=ISO] [GO:0060574 "intestinal epithelial cell
            maturation" evidence=IMP] [GO:0061030 "epithelial cell
            differentiation involved in mammary gland alveolus development"
            evidence=IMP] [GO:0061298 "retina vasculature development in
            camera-type eye" evidence=IMP] [GO:0061419 "positive regulation of
            transcription from RNA polymerase II promoter in response to
            hypoxia" evidence=ISO] [GO:0071456 "cellular response to hypoxia"
            evidence=ISO] [GO:0071542 "dopaminergic neuron differentiation"
            evidence=IGI;IMP] [GO:2001054 "negative regulation of mesenchymal
            cell apoptotic process" evidence=IMP] [GO:2001141 "regulation of
            RNA biosynthetic process" evidence=IPI] InterPro:IPR000014
            InterPro:IPR001321 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 MGI:MGI:106918 GO:GO:0005634
            GO:GO:0005737 GO:GO:0021987 GO:GO:0005730 GO:GO:0035774
            GO:GO:0032869 GO:GO:0001755 GO:GO:0071542 GO:GO:0006110
            GO:GO:0009749 GO:GO:0043565 GO:GO:0048661 GO:GO:0008542
            GO:GO:0071456 GO:GO:0043524 GO:GO:0010575 GO:GO:0050790
            GO:GO:0001525 GO:GO:0042593 GO:GO:0032007 GO:GO:0006879
            GO:GO:0005667 GO:GO:0003705 GO:GO:0001077 GO:GO:0044212
            GO:GO:0004871 GO:GO:0046716 GO:GO:0009434 GO:GO:0045926
            GO:GO:0019896 GO:GO:0045648 GO:GO:0061298 GO:GO:0051216
            GO:GO:0046982 SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            GO:GO:0001947 GO:GO:0014850 GO:GO:0001837 GO:GO:0030949
            GO:GO:0071347 GO:GO:0003151 GO:GO:0035035 GO:GO:0007595
            GO:GO:0010634 GO:GO:0001892 GO:GO:0046886 GO:GO:0043619
            GO:GO:0002052 GO:GO:0035162 GO:GO:0048546 GO:GO:0030502
            GO:GO:0042541 GO:GO:0000988 GO:GO:0006089 GO:GO:0010870
            GO:GO:0032364 eggNOG:NOG289264 HOVERGEN:HBG060456
            InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            GeneTree:ENSGT00650000093281 GO:GO:0061030 GO:GO:0003208
            OrthoDB:EOG40CHGP CTD:3091 KO:K08268 OMA:QNAQRKR ChiTaRS:HIF1A
            GO:GO:0001922 GO:GO:0032963 GO:GO:0002248 GO:GO:0051541
            GO:GO:0060574 GO:GO:2001054 GO:GO:0021502 GO:GO:0032909
            GO:GO:0010573 EMBL:U59496 EMBL:AF003695 EMBL:Y09085 EMBL:Y13656
            EMBL:AF004155 EMBL:AF004141 EMBL:AF004142 EMBL:AF004143
            EMBL:AF004144 EMBL:AF004145 EMBL:AF004146 EMBL:AF004147
            EMBL:AF004148 EMBL:AF004149 EMBL:AF004150 EMBL:AF004151
            EMBL:AF004152 EMBL:AF004153 EMBL:AF004154 EMBL:AK034087
            EMBL:AK076395 EMBL:AK033471 EMBL:AK017853 EMBL:BC026139 EMBL:X95580
            EMBL:X95002 IPI:IPI00336700 IPI:IPI00406683 PIR:JC4837
            RefSeq:NP_034561.2 UniGene:Mm.3879 UniGene:Mm.397466
            UniGene:Mm.446610 ProteinModelPortal:Q61221 SMR:Q61221
            IntAct:Q61221 MINT:MINT-1179248 STRING:Q61221 PhosphoSite:Q61221
            PRIDE:Q61221 Ensembl:ENSMUST00000021530 Ensembl:ENSMUST00000110461
            Ensembl:ENSMUST00000110464 GeneID:15251 KEGG:mmu:15251
            UCSC:uc007nwo.2 UCSC:uc007nwq.2 InParanoid:Q61221 BindingDB:Q61221
            ChEMBL:CHEMBL6046 NextBio:287865 Bgee:Q61221 CleanEx:MM_HIF1A
            Genevestigator:Q61221 GermOnline:ENSMUSG00000021109 Uniprot:Q61221
        Length = 836

 Score = 178 (67.7 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 38/114 (33%), Positives = 66/114 (57%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTIKM 140
              + Y+  NS+P+ IVC + VVS   +++ D   +   ++  +   P +S+ +KM
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD--LIFSLQQTESVLKPVESSDMKM 371


>UNIPROTKB|H0YER9 [details] [associations]
            symbol:ARNTL "Aryl hydrocarbon receptor nuclear
            translocator-like protein 1" species:9606 "Homo sapiens"
            [GO:0004871 "signal transducer activity" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447 PROSITE:PS50112
            InterPro:IPR001610 GO:GO:0006355 GO:GO:0004871 SMART:SM00086
            EMBL:AC016884 EMBL:AC022878 HGNC:HGNC:701 Ensembl:ENST00000524392
            Bgee:H0YER9 Uniprot:H0YER9
        Length = 171

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 34/86 (39%), Positives = 53/86 (61%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQWIW 81
             A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   +I 
Sbjct:     2 ATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGSFIT 60

Query:    82 LQTRFYITYHQWNSKPEFIVCTHRVV 107
             L++R++   + W  + E+IV T+ VV
Sbjct:    61 LRSRWFSFMNPWTKEVEYIVSTNTVV 86


>UNIPROTKB|Q4R658 [details] [associations]
            symbol:Q4R658 "Testis cDNA, clone: QtsA-19088, similar to
            human hypoxia-inducible factor 1, alpha subunit
            (basichelix-loop-helix transcription factor) (HIF1A),transcript
            variant 1," species:9541 "Macaca fascicularis" [GO:0001666
            "response to hypoxia" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0035035 "histone acetyltransferase binding"
            evidence=ISS] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0046982 "protein
            heterodimerization activity" evidence=ISS] InterPro:IPR000014
            InterPro:IPR001321 InterPro:IPR011598 InterPro:IPR013655
            Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0045893 GO:GO:0003677 GO:GO:0001666 GO:GO:0003700
            GO:GO:0006351 GO:GO:0004871 GO:GO:0046982 SMART:SM00086
            TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0035035 HOVERGEN:HBG060456
            InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            EMBL:AB169332 ProteinModelPortal:Q4R658 SMR:Q4R658 Uniprot:Q4R658
        Length = 826

 Score = 177 (67.4 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHGMFTKGQVTTGQYRMLAKRGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 349


>UNIPROTKB|A0JND0 [details] [associations]
            symbol:HIF1A "Hypoxia-inducible factor 1-alpha"
            species:9913 "Bos taurus" [GO:2001054 "negative regulation of
            mesenchymal cell apoptotic process" evidence=IEA] [GO:0071542
            "dopaminergic neuron differentiation" evidence=IEA] [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0061419
            "positive regulation of transcription from RNA polymerase II
            promoter in response to hypoxia" evidence=IEA] [GO:0061298 "retina
            vasculature development in camera-type eye" evidence=IEA]
            [GO:0061030 "epithelial cell differentiation involved in mammary
            gland alveolus development" evidence=IEA] [GO:0060574 "intestinal
            epithelial cell maturation" evidence=IEA] [GO:0051879 "Hsp90
            protein binding" evidence=IEA] [GO:0051541 "elastin metabolic
            process" evidence=IEA] [GO:0051216 "cartilage development"
            evidence=IEA] [GO:0050790 "regulation of catalytic activity"
            evidence=IEA] [GO:0048546 "digestive tract morphogenesis"
            evidence=IEA] [GO:0046886 "positive regulation of hormone
            biosynthetic process" evidence=IEA] [GO:0046716 "muscle cell
            homeostasis" evidence=IEA] [GO:0045926 "negative regulation of
            growth" evidence=IEA] [GO:0045648 "positive regulation of
            erythrocyte differentiation" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0043619 "regulation of transcription from RNA polymerase II
            promoter in response to oxidative stress" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0043524 "negative
            regulation of neuron apoptotic process" evidence=IEA] [GO:0042826
            "histone deacetylase binding" evidence=IEA] [GO:0042593 "glucose
            homeostasis" evidence=IEA] [GO:0042541 "hemoglobin biosynthetic
            process" evidence=IEA] [GO:0035774 "positive regulation of insulin
            secretion involved in cellular response to glucose stimulus"
            evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IEA]
            [GO:0035035 "histone acetyltransferase binding" evidence=IEA]
            [GO:0032963 "collagen metabolic process" evidence=IEA] [GO:0032909
            "regulation of transforming growth factor beta2 production"
            evidence=IEA] [GO:0032364 "oxygen homeostasis" evidence=IEA]
            [GO:0032007 "negative regulation of TOR signaling cascade"
            evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] [GO:0030949 "positive regulation of vascular
            endothelial growth factor receptor signaling pathway" evidence=IEA]
            [GO:0030502 "negative regulation of bone mineralization"
            evidence=IEA] [GO:0021987 "cerebral cortex development"
            evidence=IEA] [GO:0021502 "neural fold elevation formation"
            evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
            [GO:0019896 "axon transport of mitochondrion" evidence=IEA]
            [GO:0014850 "response to muscle activity" evidence=IEA] [GO:0010870
            "positive regulation of receptor biosynthetic process"
            evidence=IEA] [GO:0010634 "positive regulation of epithelial cell
            migration" evidence=IEA] [GO:0010575 "positive regulation vascular
            endothelial growth factor production" evidence=IEA] [GO:0010573
            "vascular endothelial growth factor production" evidence=IEA]
            [GO:0008542 "visual learning" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0007595
            "lactation" evidence=IEA] [GO:0006879 "cellular iron ion
            homeostasis" evidence=IEA] [GO:0006110 "regulation of glycolysis"
            evidence=IEA] [GO:0006089 "lactate metabolic process" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003208 "cardiac ventricle morphogenesis"
            evidence=IEA] [GO:0003151 "outflow tract morphogenesis"
            evidence=IEA] [GO:0002248 "connective tissue replacement involved
            in inflammatory response wound healing" evidence=IEA] [GO:0002052
            "positive regulation of neuroblast proliferation" evidence=IEA]
            [GO:0001947 "heart looping" evidence=IEA] [GO:0001922 "B-1 B cell
            homeostasis" evidence=IEA] [GO:0001892 "embryonic placenta
            development" evidence=IEA] [GO:0001837 "epithelial to mesenchymal
            transition" evidence=IEA] [GO:0001755 "neural crest cell migration"
            evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0001077
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0000988 "protein
            binding transcription factor activity" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001321 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0021987 GO:GO:0005730
            GO:GO:0035774 GO:GO:0001755 GO:GO:0071542 GO:GO:0006110
            GO:GO:0043565 GO:GO:0008542 GO:GO:0071456 GO:GO:0043524
            GO:GO:0010575 GO:GO:0050790 GO:GO:0001525 GO:GO:0042593
            GO:GO:0032007 GO:GO:0006879 GO:GO:0005667 GO:GO:0003705
            GO:GO:0001077 GO:GO:0044212 GO:GO:0004871 GO:GO:0046716
            GO:GO:0009434 GO:GO:0045926 GO:GO:0019896 GO:GO:0045648
            GO:GO:0061298 GO:GO:0051216 SMART:SM00086 TIGRFAMs:TIGR00229
            SUPFAM:SSF47459 GO:GO:0001947 GO:GO:0014850 GO:GO:0001837
            GO:GO:0030949 GO:GO:0071347 GO:GO:0003151 GO:GO:0007595
            GO:GO:0010634 GO:GO:0001892 GO:GO:0046886 GO:GO:0043619
            GO:GO:0002052 GO:GO:0035162 GO:GO:0048546 GO:GO:0030502
            GO:GO:0042541 GO:GO:0000988 GO:GO:0006089 GO:GO:0010870
            GO:GO:0032364 HOVERGEN:HBG060456 InterPro:IPR014887
            InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            GeneTree:ENSGT00650000093281 GO:GO:0061030 GO:GO:0003208
            UniGene:Bt.4184 CTD:3091 KO:K08268 OMA:QNAQRKR GO:GO:0001922
            GO:GO:0032963 GO:GO:0002248 GO:GO:0051541 GO:GO:0060574
            GO:GO:2001054 GO:GO:0021502 GO:GO:0032909 GO:GO:0010573
            EMBL:DAAA02029320 EMBL:BC126622 IPI:IPI00825226 RefSeq:NP_776764.2
            SMR:A0JND0 STRING:A0JND0 Ensembl:ENSBTAT00000027885 GeneID:281814
            KEGG:bta:281814 InParanoid:A0JND0 NextBio:20805726 Uniprot:A0JND0
        Length = 823

 Score = 176 (67.0 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 349


>UNIPROTKB|Q9XTA5 [details] [associations]
            symbol:HIF1A "Hypoxia-inducible factor 1-alpha"
            species:9913 "Bos taurus" [GO:0019896 "axon transport of
            mitochondrion" evidence=ISS] [GO:0071456 "cellular response to
            hypoxia" evidence=ISS] [GO:0044212 "transcription regulatory region
            DNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0035035 "histone acetyltransferase binding" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0001666 "response to hypoxia" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001321 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045893 GO:GO:0071456 GO:GO:0003700 GO:GO:0006351
            GO:GO:0044212 GO:GO:0004871 GO:GO:0019896 SMART:SM00086
            TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0035035 eggNOG:NOG289264
            HOGENOM:HOG000234306 HOVERGEN:HBG060456 InterPro:IPR014887
            InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778 EMBL:AB018398
            IPI:IPI00689122 UniGene:Bt.4184 ProteinModelPortal:Q9XTA5
            SMR:Q9XTA5 STRING:Q9XTA5 PRIDE:Q9XTA5 InParanoid:Q9XTA5
            OrthoDB:EOG40CHGP Uniprot:Q9XTA5
        Length = 823

 Score = 176 (67.0 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 349


>UNIPROTKB|Q0PGG7 [details] [associations]
            symbol:HIF1A "Hypoxia-inducible factor 1-alpha"
            species:30521 "Bos grunniens" [GO:0001666 "response to hypoxia"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0019896 "axon
            transport of mitochondrion" evidence=ISS] [GO:0035035 "histone
            acetyltransferase binding" evidence=ISS] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=ISS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0046982 "protein heterodimerization activity" evidence=ISS]
            [GO:0071456 "cellular response to hypoxia" evidence=ISS]
            InterPro:IPR000014 InterPro:IPR001321 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR01080 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045893 GO:GO:0071456 GO:GO:0003700
            GO:GO:0006351 GO:GO:0044212 GO:GO:0004871 GO:GO:0019896
            GO:GO:0046982 SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            GO:GO:0035035 HOVERGEN:HBG060456 InterPro:IPR014887
            InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778 EMBL:DQ838046
            EMBL:AY621118 ProteinModelPortal:Q0PGG7 SMR:Q0PGG7 Uniprot:Q0PGG7
        Length = 823

 Score = 176 (67.0 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKKGGYVWIETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 349


>UNIPROTKB|Q52RL7 [details] [associations]
            symbol:Q52RL7 "Hypoxia inducible factor-1 alpha"
            species:59538 "Pantholops hodgsonii" [GO:0001666 "response to
            hypoxia" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0035035 "histone acetyltransferase binding" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0046982 "protein heterodimerization activity"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR001321
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0045893 GO:GO:0003677 GO:GO:0001666
            GO:GO:0003700 GO:GO:0006351 GO:GO:0004871 GO:GO:0046982
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0035035
            HOVERGEN:HBG060456 InterPro:IPR014887 InterPro:IPR021537
            Pfam:PF11413 Pfam:PF08778 EMBL:AY971808 ProteinModelPortal:Q52RL7
            SMR:Q52RL7 Uniprot:Q52RL7
        Length = 823

 Score = 176 (67.0 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 349


>UNIPROTKB|E1BLF5 [details] [associations]
            symbol:ARNTL "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051879 "Hsp90 protein binding" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            [GO:0043425 "bHLH transcription factor binding" evidence=IEA]
            [GO:0042176 "regulation of protein catabolic process" evidence=IEA]
            [GO:0032922 "circadian regulation of gene expression" evidence=IEA]
            [GO:0017162 "aryl hydrocarbon receptor binding" evidence=IEA]
            [GO:0016604 "nuclear body" evidence=IEA] [GO:0005667 "transcription
            factor complex" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0001190 "RNA polymerase II transcription factor
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0000982 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0000060
            "protein import into nucleus, translocation" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0007623 GO:GO:0005667 GO:GO:0000060 GO:GO:0004871
            GO:GO:0000982 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0001190
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GO:GO:0042176 CTD:406 KO:K02296 OMA:EKINTNC EMBL:DAAA02040648
            IPI:IPI00712443 RefSeq:NP_001178099.1 UniGene:Bt.39079 PRIDE:E1BLF5
            Ensembl:ENSBTAT00000017323 GeneID:530705 KEGG:bta:530705
            NextBio:20875311 Uniprot:E1BLF5
        Length = 626

 Score = 174 (66.3 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQSREKITTNCY-KFKIKDGS 412

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
             +I L++R++   + W  + E+IV T+ VV   NVL   +   P
Sbjct:   413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPSFP 454


>UNIPROTKB|F8W9L0 [details] [associations]
            symbol:HIF1A "Hypoxia-inducible factor 1-alpha"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0000988 "protein binding transcription
            factor activity" evidence=IEA] [GO:0001077 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=IEA] [GO:0001525 "angiogenesis"
            evidence=IEA] [GO:0001755 "neural crest cell migration"
            evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=IEA] [GO:0001892 "embryonic placenta development"
            evidence=IEA] [GO:0001922 "B-1 B cell homeostasis" evidence=IEA]
            [GO:0001947 "heart looping" evidence=IEA] [GO:0002052 "positive
            regulation of neuroblast proliferation" evidence=IEA] [GO:0002248
            "connective tissue replacement involved in inflammatory response
            wound healing" evidence=IEA] [GO:0003151 "outflow tract
            morphogenesis" evidence=IEA] [GO:0003208 "cardiac ventricle
            morphogenesis" evidence=IEA] [GO:0006089 "lactate metabolic
            process" evidence=IEA] [GO:0006110 "regulation of glycolysis"
            evidence=IEA] [GO:0006879 "cellular iron ion homeostasis"
            evidence=IEA] [GO:0007595 "lactation" evidence=IEA] [GO:0008542
            "visual learning" evidence=IEA] [GO:0010634 "positive regulation of
            epithelial cell migration" evidence=IEA] [GO:0014850 "response to
            muscle activity" evidence=IEA] [GO:0021502 "neural fold elevation
            formation" evidence=IEA] [GO:0021987 "cerebral cortex development"
            evidence=IEA] [GO:0030502 "negative regulation of bone
            mineralization" evidence=IEA] [GO:0030949 "positive regulation of
            vascular endothelial growth factor receptor signaling pathway"
            evidence=IEA] [GO:0032007 "negative regulation of TOR signaling
            cascade" evidence=IEA] [GO:0032364 "oxygen homeostasis"
            evidence=IEA] [GO:0032963 "collagen metabolic process"
            evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IEA]
            [GO:0035774 "positive regulation of insulin secretion involved in
            cellular response to glucose stimulus" evidence=IEA] [GO:0042541
            "hemoglobin biosynthetic process" evidence=IEA] [GO:0042593
            "glucose homeostasis" evidence=IEA] [GO:0042826 "histone
            deacetylase binding" evidence=IEA] [GO:0043524 "negative regulation
            of neuron apoptotic process" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0043619
            "regulation of transcription from RNA polymerase II promoter in
            response to oxidative stress" evidence=IEA] [GO:0045648 "positive
            regulation of erythrocyte differentiation" evidence=IEA]
            [GO:0045926 "negative regulation of growth" evidence=IEA]
            [GO:0046716 "muscle cell homeostasis" evidence=IEA] [GO:0048546
            "digestive tract morphogenesis" evidence=IEA] [GO:0050790
            "regulation of catalytic activity" evidence=IEA] [GO:0051216
            "cartilage development" evidence=IEA] [GO:0051541 "elastin
            metabolic process" evidence=IEA] [GO:0060574 "intestinal epithelial
            cell maturation" evidence=IEA] [GO:0061030 "epithelial cell
            differentiation involved in mammary gland alveolus development"
            evidence=IEA] [GO:0061298 "retina vasculature development in
            camera-type eye" evidence=IEA] [GO:0071542 "dopaminergic neuron
            differentiation" evidence=IEA] [GO:2001054 "negative regulation of
            mesenchymal cell apoptotic process" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000014
            InterPro:IPR001321 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112
            SMART:SM00091 InterPro:IPR001610 GO:GO:0005737 GO:GO:0021987
            GO:GO:0005730 GO:GO:0035774 GO:GO:0032869 GO:GO:0001755
            GO:GO:0071542 GO:GO:0006110 GO:GO:0009749 GO:GO:0043565
            GO:GO:0001666 GO:GO:0048661 GO:GO:0008542 GO:GO:0043524
            GO:GO:0050790 GO:GO:0001525 GO:GO:0042593 GO:GO:0032007
            GO:GO:0006879 GO:GO:0001077 GO:GO:0004871 GO:GO:0046716
            GO:GO:0009434 GO:GO:0045926 GO:GO:0045648 GO:GO:0061298
            GO:GO:0051216 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0001947
            GO:GO:0014850 GO:GO:0001837 GO:GO:0030949 GO:GO:0003151
            GO:GO:0007595 GO:GO:0010634 GO:GO:0001892 GO:GO:0043619
            GO:GO:0002052 GO:GO:0035162 GO:GO:0048546 GO:GO:0030502
            GO:GO:0042541 GO:GO:0000988 GO:GO:0006089 GO:GO:0032364
            InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            GO:GO:0061030 GO:GO:0003208 EMBL:AL137129 HGNC:HGNC:4910
            ChiTaRS:HIF1A GO:GO:0001922 GO:GO:0032963 GO:GO:0002248
            GO:GO:0051541 GO:GO:0060574 GO:GO:2001054 GO:GO:0021502
            ProteinModelPortal:F8W9L0 SMR:F8W9L0 Ensembl:ENST00000557538
            ArrayExpress:F8W9L0 Bgee:F8W9L0 Uniprot:F8W9L0
        Length = 767

 Score = 175 (66.7 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   203 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 262

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   263 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 290


>UNIPROTKB|Q309Z6 [details] [associations]
            symbol:HIF1A "Hypoxia-inducible factor 1-alpha"
            species:146132 "Eospalax baileyi" [GO:0001666 "response to hypoxia"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0019896 "axon
            transport of mitochondrion" evidence=ISS] [GO:0035035 "histone
            acetyltransferase binding" evidence=ISS] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=ISS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0046982 "protein heterodimerization activity" evidence=ISS]
            [GO:0071456 "cellular response to hypoxia" evidence=ISS]
            InterPro:IPR000014 InterPro:IPR001321 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR01080 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045893 GO:GO:0071456 GO:GO:0003700
            GO:GO:0006351 GO:GO:0044212 GO:GO:0004871 GO:GO:0019896
            GO:GO:0046982 SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            GO:GO:0035035 HOVERGEN:HBG060456 InterPro:IPR014887
            InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778 EMBL:DQ229099
            ProteinModelPortal:Q309Z6 SMR:Q309Z6 Uniprot:Q309Z6
        Length = 819

 Score = 175 (66.7 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   263 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 322

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   323 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 350


>UNIPROTKB|Q7YSE5 [details] [associations]
            symbol:Q7YSE5 "Hypoxia inducible factor 1 alpha subunit"
            species:9986 "Oryctolagus cuniculus" [GO:0001666 "response to
            hypoxia" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0035035 "histone acetyltransferase binding" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0046982 "protein heterodimerization activity"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR001321
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0045893 GO:GO:0003677 GO:GO:0001666
            GO:GO:0003700 GO:GO:0006351 GO:GO:0004871 GO:GO:0046982
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0035035
            eggNOG:NOG289264 HOGENOM:HOG000234306 HOVERGEN:HBG060456
            InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            OrthoDB:EOG40CHGP CTD:3091 EMBL:AY273790 RefSeq:NP_001076251.1
            UniGene:Ocu.3329 HSSP:Q16665 ProteinModelPortal:Q7YSE5 SMR:Q7YSE5
            STRING:Q7YSE5 GeneID:100009579 Uniprot:Q7YSE5
        Length = 819

 Score = 175 (66.7 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 349


>UNIPROTKB|F1SRU5 [details] [associations]
            symbol:HIF1A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2001054 "negative regulation of mesenchymal cell
            apoptotic process" evidence=IEA] [GO:0071542 "dopaminergic neuron
            differentiation" evidence=IEA] [GO:0071347 "cellular response to
            interleukin-1" evidence=IEA] [GO:0061419 "positive regulation of
            transcription from RNA polymerase II promoter in response to
            hypoxia" evidence=IEA] [GO:0061298 "retina vasculature development
            in camera-type eye" evidence=IEA] [GO:0061030 "epithelial cell
            differentiation involved in mammary gland alveolus development"
            evidence=IEA] [GO:0060574 "intestinal epithelial cell maturation"
            evidence=IEA] [GO:0051879 "Hsp90 protein binding" evidence=IEA]
            [GO:0051541 "elastin metabolic process" evidence=IEA] [GO:0051216
            "cartilage development" evidence=IEA] [GO:0050790 "regulation of
            catalytic activity" evidence=IEA] [GO:0048546 "digestive tract
            morphogenesis" evidence=IEA] [GO:0046886 "positive regulation of
            hormone biosynthetic process" evidence=IEA] [GO:0046716 "muscle
            cell homeostasis" evidence=IEA] [GO:0045926 "negative regulation of
            growth" evidence=IEA] [GO:0045648 "positive regulation of
            erythrocyte differentiation" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0043619 "regulation of transcription from RNA polymerase II
            promoter in response to oxidative stress" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0043524 "negative
            regulation of neuron apoptotic process" evidence=IEA] [GO:0042826
            "histone deacetylase binding" evidence=IEA] [GO:0042593 "glucose
            homeostasis" evidence=IEA] [GO:0042541 "hemoglobin biosynthetic
            process" evidence=IEA] [GO:0035774 "positive regulation of insulin
            secretion involved in cellular response to glucose stimulus"
            evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IEA]
            [GO:0035035 "histone acetyltransferase binding" evidence=IEA]
            [GO:0032963 "collagen metabolic process" evidence=IEA] [GO:0032909
            "regulation of transforming growth factor beta2 production"
            evidence=IEA] [GO:0032364 "oxygen homeostasis" evidence=IEA]
            [GO:0032007 "negative regulation of TOR signaling cascade"
            evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] [GO:0030949 "positive regulation of vascular
            endothelial growth factor receptor signaling pathway" evidence=IEA]
            [GO:0030502 "negative regulation of bone mineralization"
            evidence=IEA] [GO:0021987 "cerebral cortex development"
            evidence=IEA] [GO:0021502 "neural fold elevation formation"
            evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
            [GO:0019896 "axon transport of mitochondrion" evidence=IEA]
            [GO:0014850 "response to muscle activity" evidence=IEA] [GO:0010870
            "positive regulation of receptor biosynthetic process"
            evidence=IEA] [GO:0010634 "positive regulation of epithelial cell
            migration" evidence=IEA] [GO:0010575 "positive regulation vascular
            endothelial growth factor production" evidence=IEA] [GO:0010573
            "vascular endothelial growth factor production" evidence=IEA]
            [GO:0008542 "visual learning" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0007595
            "lactation" evidence=IEA] [GO:0006879 "cellular iron ion
            homeostasis" evidence=IEA] [GO:0006110 "regulation of glycolysis"
            evidence=IEA] [GO:0006089 "lactate metabolic process" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003208 "cardiac ventricle morphogenesis"
            evidence=IEA] [GO:0003151 "outflow tract morphogenesis"
            evidence=IEA] [GO:0002248 "connective tissue replacement involved
            in inflammatory response wound healing" evidence=IEA] [GO:0002052
            "positive regulation of neuroblast proliferation" evidence=IEA]
            [GO:0001947 "heart looping" evidence=IEA] [GO:0001922 "B-1 B cell
            homeostasis" evidence=IEA] [GO:0001892 "embryonic placenta
            development" evidence=IEA] [GO:0001837 "epithelial to mesenchymal
            transition" evidence=IEA] [GO:0001755 "neural crest cell migration"
            evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0001077
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0000988 "protein
            binding transcription factor activity" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001321 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0021987 GO:GO:0005730
            GO:GO:0035774 GO:GO:0001755 GO:GO:0071542 GO:GO:0006110
            GO:GO:0043565 GO:GO:0008542 GO:GO:0071456 GO:GO:0043524
            GO:GO:0010575 GO:GO:0050790 GO:GO:0001525 GO:GO:0042593
            GO:GO:0032007 GO:GO:0006879 GO:GO:0005667 GO:GO:0003705
            GO:GO:0001077 GO:GO:0044212 GO:GO:0004871 GO:GO:0046716
            GO:GO:0009434 GO:GO:0045926 GO:GO:0019896 GO:GO:0045648
            GO:GO:0061298 GO:GO:0051216 SMART:SM00086 TIGRFAMs:TIGR00229
            SUPFAM:SSF47459 GO:GO:0001947 GO:GO:0014850 GO:GO:0001837
            GO:GO:0030949 GO:GO:0071347 GO:GO:0003151 GO:GO:0007595
            GO:GO:0010634 GO:GO:0001892 GO:GO:0046886 GO:GO:0043619
            GO:GO:0002052 GO:GO:0035162 GO:GO:0048546 GO:GO:0030502
            GO:GO:0042541 GO:GO:0000988 GO:GO:0006089 GO:GO:0010870
            GO:GO:0032364 InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413
            Pfam:PF08778 GeneTree:ENSGT00650000093281 GO:GO:0061030
            GO:GO:0003208 OMA:QNAQRKR GO:GO:0001922 GO:GO:0032963 GO:GO:0002248
            GO:GO:0051541 GO:GO:0060574 GO:GO:2001054 GO:GO:0021502
            GO:GO:0032909 GO:GO:0010573 EMBL:FP236550
            Ensembl:ENSSSCT00000005618 ArrayExpress:F1SRU5 Uniprot:F1SRU5
        Length = 824

 Score = 175 (66.7 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 349


>UNIPROTKB|Q6H8T3 [details] [associations]
            symbol:hif-1a "Hypoxia inducible factor 1 alpha"
            species:134510 "Nannospalax judaei" [GO:0001666 "response to
            hypoxia" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0035035 "histone acetyltransferase binding" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0046982 "protein heterodimerization activity"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR001321
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0045893 GO:GO:0003677 GO:GO:0001666
            GO:GO:0003700 GO:GO:0006351 GO:GO:0004871 GO:GO:0046982
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0035035
            HOVERGEN:HBG060456 InterPro:IPR014887 InterPro:IPR021537
            Pfam:PF11413 Pfam:PF08778 EMBL:AJ715791 ProteinModelPortal:Q6H8T3
            SMR:Q6H8T3 Uniprot:Q6H8T3
        Length = 824

 Score = 175 (66.7 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 349


>UNIPROTKB|Q16665 [details] [associations]
            symbol:HIF1A "Hypoxia-inducible factor 1-alpha"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0001077 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=IEA] [GO:0001525 "angiogenesis"
            evidence=IEA] [GO:0001755 "neural crest cell migration"
            evidence=IEA] [GO:0001892 "embryonic placenta development"
            evidence=IEA] [GO:0001922 "B-1 B cell homeostasis" evidence=IEA]
            [GO:0001947 "heart looping" evidence=IEA] [GO:0002052 "positive
            regulation of neuroblast proliferation" evidence=IEA] [GO:0003151
            "outflow tract morphogenesis" evidence=IEA] [GO:0003208 "cardiac
            ventricle morphogenesis" evidence=IEA] [GO:0006089 "lactate
            metabolic process" evidence=IEA] [GO:0006879 "cellular iron ion
            homeostasis" evidence=IEA] [GO:0007595 "lactation" evidence=IEA]
            [GO:0008542 "visual learning" evidence=IEA] [GO:0014850 "response
            to muscle activity" evidence=IEA] [GO:0021502 "neural fold
            elevation formation" evidence=IEA] [GO:0021987 "cerebral cortex
            development" evidence=IEA] [GO:0030502 "negative regulation of bone
            mineralization" evidence=IEA] [GO:0032007 "negative regulation of
            TOR signaling cascade" evidence=IEA] [GO:0035162 "embryonic
            hemopoiesis" evidence=IEA] [GO:0035774 "positive regulation of
            insulin secretion involved in cellular response to glucose
            stimulus" evidence=IEA] [GO:0042541 "hemoglobin biosynthetic
            process" evidence=IEA] [GO:0042593 "glucose homeostasis"
            evidence=IEA] [GO:0042826 "histone deacetylase binding"
            evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
            process" evidence=IEA] [GO:0045926 "negative regulation of growth"
            evidence=IEA] [GO:0046716 "muscle cell homeostasis" evidence=IEA]
            [GO:0048546 "digestive tract morphogenesis" evidence=IEA]
            [GO:0051216 "cartilage development" evidence=IEA] [GO:0060574
            "intestinal epithelial cell maturation" evidence=IEA] [GO:0061030
            "epithelial cell differentiation involved in mammary gland alveolus
            development" evidence=IEA] [GO:0061298 "retina vasculature
            development in camera-type eye" evidence=IEA] [GO:0071542
            "dopaminergic neuron differentiation" evidence=IEA] [GO:2001054
            "negative regulation of mesenchymal cell apoptotic process"
            evidence=IEA] [GO:0046982 "protein heterodimerization activity"
            evidence=TAS;IPI] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0001666 "response to hypoxia" evidence=IMP;IDA] [GO:0045893
            "positive regulation of transcription, DNA-dependent"
            evidence=IMP;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IDA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IDA;TAS]
            [GO:0035035 "histone acetyltransferase binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0010468 "regulation of gene
            expression" evidence=IDA] [GO:0071456 "cellular response to
            hypoxia" evidence=IEP;IDA;TAS] [GO:0019901 "protein kinase binding"
            evidence=IPI] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IDA] [GO:0019896 "axon transport of
            mitochondrion" evidence=IMP] [GO:0019899 "enzyme binding"
            evidence=IPI] [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IPI] [GO:0005667 "transcription factor complex"
            evidence=IPI] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IGI] [GO:0032364 "oxygen
            homeostasis" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0007219 "Notch signaling
            pathway" evidence=TAS] [GO:0033554 "cellular response to stress"
            evidence=TAS] [GO:0061418 "regulation of transcription from RNA
            polymerase II promoter in response to hypoxia" evidence=TAS]
            [GO:0043619 "regulation of transcription from RNA polymerase II
            promoter in response to oxidative stress" evidence=IDA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IDA] [GO:0008134
            "transcription factor binding" evidence=IPI] [GO:0042789 "mRNA
            transcription from RNA polymerase II promoter" evidence=IC]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0007165 "signal transduction" evidence=IMP] [GO:0032909
            "regulation of transforming growth factor beta2 production"
            evidence=IMP] [GO:0051879 "Hsp90 protein binding" evidence=IDA]
            [GO:0032722 "positive regulation of chemokine production"
            evidence=TAS] [GO:0051000 "positive regulation of nitric-oxide
            synthase activity" evidence=TAS] [GO:0001938 "positive regulation
            of endothelial cell proliferation" evidence=IC] [GO:0010575
            "positive regulation vascular endothelial growth factor production"
            evidence=IDA] [GO:0030949 "positive regulation of vascular
            endothelial growth factor receptor signaling pathway" evidence=IC]
            [GO:0045766 "positive regulation of angiogenesis" evidence=IC]
            [GO:0045821 "positive regulation of glycolysis" evidence=IC]
            [GO:0046886 "positive regulation of hormone biosynthetic process"
            evidence=IDA] [GO:0045648 "positive regulation of erythrocyte
            differentiation" evidence=IC] [GO:0001837 "epithelial to
            mesenchymal transition" evidence=ISS] [GO:0002248 "connective
            tissue replacement involved in inflammatory response wound healing"
            evidence=ISS] [GO:0010634 "positive regulation of epithelial cell
            migration" evidence=ISS] [GO:0032963 "collagen metabolic process"
            evidence=ISS] [GO:0051541 "elastin metabolic process" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0070101 "positive
            regulation of chemokine-mediated signaling pathway" evidence=IC]
            [GO:0010870 "positive regulation of receptor biosynthetic process"
            evidence=IMP] [GO:0071347 "cellular response to interleukin-1"
            evidence=IEP] [GO:0010573 "vascular endothelial growth factor
            production" evidence=IDA] [GO:0061419 "positive regulation of
            transcription from RNA polymerase II promoter in response to
            hypoxia" evidence=IDA;IMP] [GO:0000988 "protein binding
            transcription factor activity" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] InterPro:IPR000014 InterPro:IPR001321
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112
            PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 Reactome:REACT_120956 GO:GO:0005829
            GO:GO:0005737 Reactome:REACT_111102 GO:GO:0021987 GO:GO:0005730
            GO:GO:0035774 GO:GO:0032869 GO:GO:0003677 GO:GO:0001755
            GO:GO:0001938 GO:GO:0051000 GO:GO:0071542
            Pathway_Interaction_DB:hif1_tfpathway GO:GO:0009749 GO:GO:0043565
            GO:GO:0048661 GO:GO:0008542 GO:GO:0007219 GO:GO:0043524
            GO:GO:0032722 GO:GO:0010575 GO:GO:0003700 GO:GO:0006351
            GO:GO:0001525 GO:GO:0045766 GO:GO:0042593 GO:GO:0032007
            GO:GO:0045821 GO:GO:0006879 GO:GO:0005667 GO:GO:0003705
            GO:GO:0001077 GO:GO:0044212 Pathway_Interaction_DB:pdgfrbpathway
            GO:GO:0004871 GO:GO:0046716 GO:GO:0009434 GO:GO:0045926
            GO:GO:0019896 GO:GO:0045648 GO:GO:0061298 GO:GO:0051216
            GO:GO:0046982 SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            GO:GO:0001947 GO:GO:0051879 GO:GO:0014850
            Pathway_Interaction_DB:vegfr1_2_pathway
            Pathway_Interaction_DB:vegfr1_pathway GO:GO:0001837 GO:GO:0030949
            GO:GO:0071347 GO:GO:0003151 GO:GO:0007595 GO:GO:0010634 PDB:1D7G
            PDB:4H6J PDBsum:1D7G PDBsum:4H6J
            Pathway_Interaction_DB:hif1apathway GO:GO:0001892 GO:GO:0042789
            GO:GO:0046886 GO:GO:0043619 GO:GO:0002052 GO:GO:0035162
            GO:GO:0048546 GO:GO:0030502 GO:GO:0042541 PDB:1L8C PDBsum:1L8C
            GO:GO:0000988 GO:GO:0006089 GO:GO:0010870 GO:GO:0070101 PDB:3HQR
            PDB:3HQU PDBsum:3HQR PDBsum:3HQU GO:GO:0032364 PDB:1LM8 PDB:1LQB
            PDB:4AJY PDBsum:1LM8 PDBsum:1LQB PDBsum:4AJY PDB:1L3E PDBsum:1L3E
            eggNOG:NOG289264 HOGENOM:HOG000234306 HOVERGEN:HBG060456
            InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            GO:GO:0061030 GO:GO:0003208 OrthoDB:EOG40CHGP CTD:3091 KO:K08268
            EMBL:U22431 EMBL:U29165 EMBL:AF050127 EMBL:AF050115 EMBL:AF050116
            EMBL:AF050117 EMBL:AF050118 EMBL:AF050119 EMBL:AF050120
            EMBL:AF050121 EMBL:AF050122 EMBL:AF050123 EMBL:AF050124
            EMBL:AF050125 EMBL:AF050126 EMBL:FJ790247 EMBL:AF207601
            EMBL:AF207602 EMBL:AF208487 EMBL:AF304431 EMBL:AB073325
            EMBL:BT009776 EMBL:AL137129 EMBL:BC012527 IPI:IPI00003442
            IPI:IPI00332963 IPI:IPI00788876 PIR:I38972 RefSeq:NP_001230013.1
            RefSeq:NP_001521.1 RefSeq:NP_851397.1 UniGene:Hs.597216
            UniGene:Hs.719495 PDB:1H2K PDB:1H2L PDB:1H2M PDB:2ILM PDBsum:1H2K
            PDBsum:1H2L PDBsum:1H2M PDBsum:2ILM DisProt:DP00262
            ProteinModelPortal:Q16665 SMR:Q16665 DIP:DIP-29722N IntAct:Q16665
            MINT:MINT-133270 STRING:Q16665 PhosphoSite:Q16665 DMDM:2498017
            PaxDb:Q16665 PRIDE:Q16665 DNASU:3091 Ensembl:ENST00000323441
            Ensembl:ENST00000337138 Ensembl:ENST00000539097 GeneID:3091
            KEGG:hsa:3091 UCSC:uc001xfq.2 GeneCards:GC14P062162 HGNC:HGNC:4910
            HPA:CAB017442 HPA:HPA001275 MIM:603348 neXtProt:NX_Q16665
            PharmGKB:PA29283 OMA:QNAQRKR PhylomeDB:Q16665 BindingDB:Q16665
            ChEMBL:CHEMBL4261 ChiTaRS:HIF1A EvolutionaryTrace:Q16665
            GenomeRNAi:3091 NextBio:12265 ArrayExpress:Q16665 Bgee:Q16665
            CleanEx:HS_HIF1A Genevestigator:Q16665 GermOnline:ENSG00000100644
            GO:GO:0001922 GO:GO:0032963 GO:GO:0002248 GO:GO:0051541
            GO:GO:0060574 GO:GO:2001054 GO:GO:0021502 GO:GO:0061419
            GO:GO:0032909 GO:GO:0010573 Uniprot:Q16665
        Length = 826

 Score = 175 (66.7 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 349


>UNIPROTKB|A8MYV6 [details] [associations]
            symbol:HIF1A "Hypoxia-inducible factor 1, alpha subunit
            (Basic helix-loop-helix transcription factor), isoform CRA_a"
            species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000014 InterPro:IPR001321 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR01080 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0005730
            EMBL:CH471061 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            HOVERGEN:HBG060456 InterPro:IPR014887 InterPro:IPR021537
            Pfam:PF11413 Pfam:PF08778 EMBL:AL137129 IPI:IPI00788876
            UniGene:Hs.597216 UniGene:Hs.719495 HGNC:HGNC:4910 ChiTaRS:HIF1A
            SMR:A8MYV6 STRING:A8MYV6 Ensembl:ENST00000394997 UCSC:uc001xfs.2
            Uniprot:A8MYV6
        Length = 827

 Score = 175 (66.7 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   263 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 322

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   323 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 350


>UNIPROTKB|Q4ZH58 [details] [associations]
            symbol:Q4ZH58 "Hypoxia-inducible factor 1 alpha"
            species:64717 "Microtus oeconomus" [GO:0001666 "response to
            hypoxia" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0035035 "histone acetyltransferase binding" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0046982 "protein heterodimerization activity"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR001321
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0045893 GO:GO:0003677 GO:GO:0001666
            GO:GO:0003700 GO:GO:0006351 GO:GO:0004871 GO:GO:0046982
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0035035
            HOVERGEN:HBG060456 InterPro:IPR014887 InterPro:IPR021537
            Pfam:PF11413 Pfam:PF08778 EMBL:DQ010149 ProteinModelPortal:Q4ZH58
            SMR:Q4ZH58 Uniprot:Q4ZH58
        Length = 828

 Score = 175 (66.7 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + VVS   +++ D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS--GIIQHD 349


>ZFIN|ZDB-GENE-000509-1 [details] [associations]
            symbol:arntl1a "aryl hydrocarbon receptor nuclear
            translocator-like 1a" species:7955 "Danio rerio" [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0007165 "signal transduction" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0046982 "protein heterodimerization activity"
            evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA;IDA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0009648 "photoperiodism" evidence=IEP]
            [GO:0007623 "circadian rhythm" evidence=IGI] [GO:0009416 "response
            to light stimulus" evidence=IGI] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 ZFIN:ZDB-GENE-000509-1
            GO:GO:0005737 GO:GO:0045892 GO:GO:0045893 GO:GO:0003677
            GO:GO:0007623 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            HSSP:P36956 HOVERGEN:HBG107503 KO:K02296 OMA:EKINTNC GO:GO:0009648
            EMBL:CR759966 EMBL:AF144689 EMBL:AF144690 IPI:IPI00490446
            RefSeq:NP_571652.1 UniGene:Dr.75458 DIP:DIP-46453N STRING:Q9I879
            Ensembl:ENSDART00000023959 Ensembl:ENSDART00000148660 GeneID:58098
            KEGG:dre:58098 CTD:58098 InParanoid:Q9I879 NextBio:20892352
            Uniprot:Q9I879
        Length = 626

 Score = 173 (66.0 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 36/90 (40%), Positives = 55/90 (61%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGE--GTSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   358 DQRATAILAYLPQELLGTSFYEYFHQDDIGHLAECHRQVLQMREKISTNCY-KFKIKDGS 416

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVS 108
             +I L++R++   + W  + E+IV T+ VVS
Sbjct:   417 FITLRSRWFSFMNPWTKEVEYIVSTNTVVS 446


>UNIPROTKB|Q64F54 [details] [associations]
            symbol:Q64F54 "Hypoxia-inducible factor 1 alpha subunit"
            species:43179 "Spermophilus tridecemlineatus" [GO:0001666 "response
            to hypoxia" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0035035 "histone acetyltransferase binding" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0046982 "protein heterodimerization activity"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR001321
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0045893 GO:GO:0003677 GO:GO:0001666
            GO:GO:0003700 GO:GO:0006351 GO:GO:0004871 GO:GO:0046982
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0035035
            HOVERGEN:HBG060456 InterPro:IPR014887 InterPro:IPR021537
            Pfam:PF11413 Pfam:PF08778 EMBL:AY713478 ProteinModelPortal:Q64F54
            SMR:Q64F54 Uniprot:Q64F54
        Length = 821

 Score = 174 (66.3 bits), Expect = 4.7e-12, P = 4.7e-12
 Identities = 33/82 (40%), Positives = 51/82 (62%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVS 108
              + Y+  NS+P+ IVC + VVS
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVVS 343


>UNIPROTKB|Q5R4T2 [details] [associations]
            symbol:ARNTL "Aryl hydrocarbon receptor nuclear
            translocator-like protein 1" species:9601 "Pongo abelii"
            [GO:0005667 "transcription factor complex" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0032922 "circadian regulation of gene expression"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0006355
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 GO:GO:0032922 SMART:SM00086 TIGRFAMs:TIGR00229
            Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956 CTD:406
            HOVERGEN:HBG107503 KO:K02296 EMBL:CR861161 RefSeq:NP_001126900.1
            UniGene:Pab.3880 ProteinModelPortal:Q5R4T2 GeneID:100173916
            KEGG:pon:100173916 Uniprot:Q5R4T2
        Length = 625

 Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   353 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 411

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
             +I L++R++   + W  + E+IV T+ VV   NVL   +   P
Sbjct:   412 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFP 453


>UNIPROTKB|O00327 [details] [associations]
            symbol:ARNTL "Aryl hydrocarbon receptor nuclear
            translocator-like protein 1" species:9606 "Homo sapiens"
            [GO:0004871 "signal transducer activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000060 "protein import into nucleus,
            translocation" evidence=IEA] [GO:0001190 "RNA polymerase II
            transcription factor binding transcription factor activity involved
            in positive regulation of transcription" evidence=IEA] [GO:0016604
            "nuclear body" evidence=IEA] [GO:0042176 "regulation of protein
            catabolic process" evidence=IEA] [GO:0043425 "bHLH transcription
            factor binding" evidence=IEA] [GO:0046982 "protein
            heterodimerization activity" evidence=IEA] [GO:0007623 "circadian
            rhythm" evidence=TAS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0032922 "circadian regulation of
            gene expression" evidence=ISS] [GO:0003677 "DNA binding"
            evidence=IGI] [GO:0005667 "transcription factor complex"
            evidence=IPI] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IGI;IDA] [GO:0017162
            "aryl hydrocarbon receptor binding" evidence=IPI] [GO:0051879
            "Hsp90 protein binding" evidence=IDA] [GO:0000982 "RNA polymerase
            II core promoter proximal region sequence-specific DNA binding
            transcription factor activity" evidence=ISS] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005737
            EMBL:CH471064 GO:GO:0003677 GO:GO:0045944 GO:GO:0005667
            GO:GO:0000060 GO:GO:0004871 GO:GO:0000982 GO:GO:0032922
            SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0001190 eggNOG:NOG293303
            HOGENOM:HOG000234379 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GO:GO:0051879 GO:GO:0042176 Pathway_Interaction_DB:circadianpathway
            Reactome:REACT_24941 CTD:406 HOVERGEN:HBG107503 KO:K02296
            OMA:EKINTNC OrthoDB:EOG4NS3B2 EMBL:D89722 EMBL:AB000812
            EMBL:AB000813 EMBL:AB000814 EMBL:AB000815 EMBL:AB000816 EMBL:U51627
            EMBL:U60415 EMBL:AF044288 EMBL:AK095749 EMBL:AK291510 EMBL:EF015894
            EMBL:AC016884 EMBL:AC022878 EMBL:BC016674 EMBL:BC031214
            EMBL:BC041129 IPI:IPI00217732 IPI:IPI00217734 IPI:IPI00217735
            IPI:IPI00217736 IPI:IPI00412162 IPI:IPI00413132 IPI:IPI00783543
            IPI:IPI00879656 IPI:IPI00910251 PIR:JC5405 PIR:JC5407 PIR:PC4288
            PIR:PC4289 RefSeq:NP_001025443.1 RefSeq:NP_001025444.1
            RefSeq:NP_001169.3 UniGene:Hs.65734 PDB:4H10 PDBsum:4H10
            ProteinModelPortal:O00327 SMR:O00327 IntAct:O00327 STRING:O00327
            PhosphoSite:O00327 PaxDb:O00327 PRIDE:O00327 DNASU:406
            Ensembl:ENST00000361003 Ensembl:ENST00000389707
            Ensembl:ENST00000396441 Ensembl:ENST00000401424
            Ensembl:ENST00000403290 Ensembl:ENST00000403482
            Ensembl:ENST00000403510 GeneID:406 KEGG:hsa:406 UCSC:uc001mkp.3
            UCSC:uc001mkr.3 UCSC:uc001mks.3 UCSC:uc001mkx.3 UCSC:uc009ygm.1
            GeneCards:GC11P013299 HGNC:HGNC:701 MIM:602550 neXtProt:NX_O00327
            PharmGKB:PA24996 InParanoid:O00327 GenomeRNAi:406 NextBio:1701
            ArrayExpress:O00327 Bgee:O00327 Genevestigator:O00327
            GermOnline:ENSG00000133794 Uniprot:O00327
        Length = 626

 Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 412

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
             +I L++R++   + W  + E+IV T+ VV   NVL   +   P
Sbjct:   413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFP 454


>UNIPROTKB|A0MLS5 [details] [associations]
            symbol:ARNTL "Aryl hydrocarbon receptor nuclear
            translocator-like protein 1" species:9796 "Equus caballus"
            [GO:0005667 "transcription factor complex" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0032922 "circadian regulation of gene expression"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0006355
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 GO:GO:0032922 SMART:SM00086 TIGRFAMs:TIGR00229
            eggNOG:NOG293303 HOGENOM:HOG000234379 Gene3D:4.10.280.10
            SUPFAM:SSF47459 CTD:406 HOVERGEN:HBG107503 KO:K02296
            OrthoDB:EOG4NS3B2 EMBL:DQ988038 RefSeq:NP_001075390.1
            UniGene:Eca.2805 ProteinModelPortal:A0MLS5 STRING:A0MLS5
            GeneID:100034115 KEGG:ecb:100034115 InParanoid:A0MLS5
            Uniprot:A0MLS5
        Length = 626

 Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 412

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
             +I L++R++   + W  + E+IV T+ VV   NVL   +   P
Sbjct:   413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFP 454


>UNIPROTKB|O88529 [details] [associations]
            symbol:ARNTL "Aryl hydrocarbon receptor nuclear
            translocator-like protein 1" species:10036 "Mesocricetus auratus"
            [GO:0005667 "transcription factor complex" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0032922 "circadian regulation of gene expression"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0006355
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 GO:GO:0032922 SMART:SM00086 TIGRFAMs:TIGR00229
            Gene3D:4.10.280.10 SUPFAM:SSF47459 HOVERGEN:HBG107503 EMBL:AF070917
            ProteinModelPortal:O88529 IntAct:O88529 Uniprot:O88529
        Length = 626

 Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 412

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
             +I L++R++   + W  + E+IV T+ VV   NVL   +   P
Sbjct:   413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFP 454


>UNIPROTKB|Q91YA9 [details] [associations]
            symbol:Arntl "Aryl hydrocarbon receptor nuclear
            translocator-like protein 1" species:1026970 "Nannospalax galili"
            [GO:0005667 "transcription factor complex" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0032922 "circadian regulation of gene expression"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 EMBL:AJ318060 GO:GO:0005737
            GO:GO:0006355 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0004871 GO:GO:0032922 SMART:SM00086
            TIGRFAMs:TIGR00229 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
            HOVERGEN:HBG107503 ProteinModelPortal:Q91YA9 Uniprot:Q91YA9
        Length = 626

 Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 412

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
             +I L++R++   + W  + E+IV T+ VV   NVL   +   P
Sbjct:   413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFP 454


>RGD|62003 [details] [associations]
            symbol:Arntl "aryl hydrocarbon receptor nuclear translocator-like"
           species:10116 "Rattus norvegicus" [GO:0000060 "protein import into
           nucleus, translocation" evidence=ISO] [GO:0000982 "RNA polymerase II
           core promoter proximal region sequence-specific DNA binding
           transcription factor activity" evidence=ISO] [GO:0001190 "RNA
           polymerase II transcription factor binding transcription factor
           activity involved in positive regulation of transcription"
           evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
           [GO:0003700 "sequence-specific DNA binding transcription factor
           activity" evidence=IEA;ISO] [GO:0004871 "signal transducer activity"
           evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005667
           "transcription factor complex" evidence=IEA;ISO;ISS] [GO:0005737
           "cytoplasm" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
           evidence=IEA] [GO:0006355 "regulation of transcription,
           DNA-dependent" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
           evidence=IEP;ISO] [GO:0016604 "nuclear body" evidence=ISO]
           [GO:0017162 "aryl hydrocarbon receptor binding" evidence=ISO]
           [GO:0032922 "circadian regulation of gene expression"
           evidence=ISO;ISS] [GO:0042176 "regulation of protein catabolic
           process" evidence=ISO] [GO:0042752 "regulation of circadian rhythm"
           evidence=NAS] [GO:0043425 "bHLH transcription factor binding"
           evidence=ISO] [GO:0045944 "positive regulation of transcription from
           RNA polymerase II promoter" evidence=ISO] [GO:0046982 "protein
           heterodimerization activity" evidence=ISO] [GO:0046983 "protein
           dimerization activity" evidence=IEA] [GO:0051879 "Hsp90 protein
           binding" evidence=ISO] InterPro:IPR000014 InterPro:IPR001067
           InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
           Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
           PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
           SMART:SM00353 InterPro:IPR001610 RGD:62003 GO:GO:0005737
           GO:GO:0006355 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
           GO:GO:0042752 GO:GO:0005667 GO:GO:0004871 GO:GO:0032922
           SMART:SM00086 TIGRFAMs:TIGR00229 eggNOG:NOG293303
           GeneTree:ENSGT00650000092935 HOGENOM:HOG000234379 Gene3D:4.10.280.10
           SUPFAM:SSF47459 CTD:406 HOVERGEN:HBG107503 KO:K02296 EMBL:AB012600
           EMBL:AF015953 EMBL:AF317669 EMBL:BC099833 IPI:IPI00339130
           IPI:IPI00339131 IPI:IPI00339132 RefSeq:NP_077338.2 UniGene:Rn.14532
           ProteinModelPortal:Q9EPW1 STRING:Q9EPW1 PhosphoSite:Q9EPW1
           Ensembl:ENSRNOT00000019645 GeneID:29657 KEGG:rno:29657
           UCSC:RGD:62003 NextBio:609947 ArrayExpress:Q9EPW1
           Genevestigator:Q9EPW1 GermOnline:ENSRNOG00000014448 Uniprot:Q9EPW1
        Length = 626

 Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 412

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
             +I L++R++   + W  + E+IV T+ VV   NVL   +   P
Sbjct:   413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFP 454


>UNIPROTKB|Q9EPW1 [details] [associations]
            symbol:Arntl "Aryl hydrocarbon receptor nuclear
            translocator-like protein 1" species:10116 "Rattus norvegicus"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 RGD:62003
            GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0042752 GO:GO:0005667 GO:GO:0004871
            GO:GO:0032922 SMART:SM00086 TIGRFAMs:TIGR00229 eggNOG:NOG293303
            GeneTree:ENSGT00650000092935 HOGENOM:HOG000234379
            Gene3D:4.10.280.10 SUPFAM:SSF47459 CTD:406 HOVERGEN:HBG107503
            KO:K02296 EMBL:AB012600 EMBL:AF015953 EMBL:AF317669 EMBL:BC099833
            IPI:IPI00339130 IPI:IPI00339131 IPI:IPI00339132 RefSeq:NP_077338.2
            UniGene:Rn.14532 ProteinModelPortal:Q9EPW1 STRING:Q9EPW1
            PhosphoSite:Q9EPW1 Ensembl:ENSRNOT00000019645 GeneID:29657
            KEGG:rno:29657 UCSC:RGD:62003 NextBio:609947 ArrayExpress:Q9EPW1
            Genevestigator:Q9EPW1 GermOnline:ENSRNOG00000014448 Uniprot:Q9EPW1
        Length = 626

 Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 412

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
             +I L++R++   + W  + E+IV T+ VV   NVL   +   P
Sbjct:   413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFP 454


>UNIPROTKB|E2R130 [details] [associations]
            symbol:ARNTL "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005667 "transcription factor
            complex" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AAEX03012928
            Ensembl:ENSCAFT00000012969 Uniprot:E2R130
        Length = 627

 Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 412

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
             +I L++R++   + W  + E+IV T+ VV   NVL   +   P
Sbjct:   413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFP 454


>MGI|MGI:1096381 [details] [associations]
            symbol:Arntl "aryl hydrocarbon receptor nuclear
            translocator-like" species:10090 "Mus musculus" [GO:0000060
            "protein import into nucleus, translocation" evidence=IDA]
            [GO:0000982 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IC]
            [GO:0001190 "RNA polymerase II transcription factor binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=ISO;IPI] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISA;IDA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005667 "transcription factor complex" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISA;IDA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0007623 "circadian rhythm"
            evidence=IDA;IMP] [GO:0008134 "transcription factor binding"
            evidence=ISA] [GO:0016604 "nuclear body" evidence=IDA] [GO:0017162
            "aryl hydrocarbon receptor binding" evidence=ISO] [GO:0032922
            "circadian regulation of gene expression" evidence=IDA] [GO:0042176
            "regulation of protein catabolic process" evidence=IDA] [GO:0043425
            "bHLH transcription factor binding" evidence=IPI] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IGI;IC;ISO;IDA] [GO:0046982 "protein
            heterodimerization activity" evidence=IPI] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0048511 "rhythmic process"
            evidence=IEA] [GO:0051879 "Hsp90 protein binding" evidence=ISO]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            MGI:MGI:1096381 GO:GO:0005829 GO:GO:0003677 GO:GO:0005667
            GO:GO:0001077 GO:GO:0000060 GO:GO:0004871 GO:GO:0032922
            SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0001190 eggNOG:NOG293303
            GeneTree:ENSGT00650000092935 HOGENOM:HOG000234379
            Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0008134 GO:GO:0042176
            GO:GO:0016604 Reactome:REACT_109335 Reactome:REACT_24972 CTD:406
            HOVERGEN:HBG107503 KO:K02296 OMA:EKINTNC OrthoDB:EOG4NS3B2
            EMBL:AB012601 EMBL:AB015203 EMBL:AB012602 EMBL:AB014494
            EMBL:BC025973 EMBL:BC011080 IPI:IPI00403502 IPI:IPI00462286
            IPI:IPI00474434 IPI:IPI00474567 IPI:IPI00875930 PIR:JE0270
            RefSeq:NP_001229977.1 RefSeq:NP_031515.1 UniGene:Mm.440371 PDB:4F3L
            PDBsum:4F3L ProteinModelPortal:Q9WTL8 SMR:Q9WTL8 DIP:DIP-43977N
            IntAct:Q9WTL8 MINT:MINT-1657344 STRING:Q9WTL8 PhosphoSite:Q9WTL8
            PaxDb:Q9WTL8 PRIDE:Q9WTL8 Ensembl:ENSMUST00000047321 GeneID:11865
            KEGG:mmu:11865 UCSC:uc009jhf.1 UCSC:uc009jhi.1 UCSC:uc009jhj.1
            InParanoid:Q9WTL8 NextBio:279875 Bgee:Q9WTL8 Genevestigator:Q9WTL8
            GermOnline:ENSMUSG00000055116 Uniprot:Q9WTL8
        Length = 632

 Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   360 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 418

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
             +I L++R++   + W  + E+IV T+ VV   NVL   +   P
Sbjct:   419 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFP 460


>UNIPROTKB|J9NTT7 [details] [associations]
            symbol:ARNTL "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005667 "transcription factor
            complex" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 OMA:EKINTNC EMBL:AAEX03012928
            Ensembl:ENSCAFT00000044767 Uniprot:J9NTT7
        Length = 659

 Score = 172 (65.6 bits), Expect = 5.6e-12, P = 5.6e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   386 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 444

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
             +I L++R++   + W  + E+IV T+ VV   NVL   +   P
Sbjct:   445 FITLRSRWFSFMNPWTKEVEYIVSTNTVV-LANVLEGGDPTFP 486


>UNIPROTKB|F1NJK2 [details] [associations]
            symbol:HIF1A "Hypoxia-inducible factor 1-alpha"
            species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001321 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            SUPFAM:SSF47459 InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413
            Pfam:PF08778 GeneTree:ENSGT00650000093281 IPI:IPI00597728
            EMBL:AADN02003885 EMBL:AADN02003886 Ensembl:ENSGALT00000019364
            ArrayExpress:F1NJK2 Uniprot:F1NJK2
        Length = 810

 Score = 173 (66.0 bits), Expect = 5.9e-12, P = 5.9e-12
 Identities = 33/90 (36%), Positives = 56/90 (62%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   261 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKQGGYVWVETQA 320

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + V+S   ++++D
Sbjct:   321 TVIYNTKNSQPQCIVCVNYVLS--GIVQKD 348


>UNIPROTKB|F1NQK5 [details] [associations]
            symbol:HIF1A "Hypoxia-inducible factor 1-alpha"
            species:9031 "Gallus gallus" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0046716 "muscle cell homeostasis" evidence=IEA]
            [GO:0046886 "positive regulation of hormone biosynthetic process"
            evidence=IEA] [GO:0048546 "digestive tract morphogenesis"
            evidence=IEA] [GO:0050790 "regulation of catalytic activity"
            evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
            [GO:0051541 "elastin metabolic process" evidence=IEA] [GO:0051879
            "Hsp90 protein binding" evidence=IEA] [GO:0060574 "intestinal
            epithelial cell maturation" evidence=IEA] [GO:0061030 "epithelial
            cell differentiation involved in mammary gland alveolus
            development" evidence=IEA] [GO:0061298 "retina vasculature
            development in camera-type eye" evidence=IEA] [GO:0061419 "positive
            regulation of transcription from RNA polymerase II promoter in
            response to hypoxia" evidence=IEA] [GO:0071347 "cellular response
            to interleukin-1" evidence=IEA] [GO:0071542 "dopaminergic neuron
            differentiation" evidence=IEA] [GO:2001054 "negative regulation of
            mesenchymal cell apoptotic process" evidence=IEA] [GO:0000988
            "protein binding transcription factor activity" evidence=IEA]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IEA]
            [GO:0001525 "angiogenesis" evidence=IEA] [GO:0001755 "neural crest
            cell migration" evidence=IEA] [GO:0001837 "epithelial to
            mesenchymal transition" evidence=IEA] [GO:0001892 "embryonic
            placenta development" evidence=IEA] [GO:0001922 "B-1 B cell
            homeostasis" evidence=IEA] [GO:0001947 "heart looping"
            evidence=IEA] [GO:0002052 "positive regulation of neuroblast
            proliferation" evidence=IEA] [GO:0002248 "connective tissue
            replacement involved in inflammatory response wound healing"
            evidence=IEA] [GO:0003151 "outflow tract morphogenesis"
            evidence=IEA] [GO:0003208 "cardiac ventricle morphogenesis"
            evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006089 "lactate metabolic process"
            evidence=IEA] [GO:0006110 "regulation of glycolysis" evidence=IEA]
            [GO:0006879 "cellular iron ion homeostasis" evidence=IEA]
            [GO:0007595 "lactation" evidence=IEA] [GO:0008134 "transcription
            factor binding" evidence=IEA] [GO:0008542 "visual learning"
            evidence=IEA] [GO:0010573 "vascular endothelial growth factor
            production" evidence=IEA] [GO:0010575 "positive regulation vascular
            endothelial growth factor production" evidence=IEA] [GO:0010634
            "positive regulation of epithelial cell migration" evidence=IEA]
            [GO:0010870 "positive regulation of receptor biosynthetic process"
            evidence=IEA] [GO:0014850 "response to muscle activity"
            evidence=IEA] [GO:0019896 "axon transport of mitochondrion"
            evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
            [GO:0021502 "neural fold elevation formation" evidence=IEA]
            [GO:0021987 "cerebral cortex development" evidence=IEA] [GO:0030502
            "negative regulation of bone mineralization" evidence=IEA]
            [GO:0030949 "positive regulation of vascular endothelial growth
            factor receptor signaling pathway" evidence=IEA] [GO:0031625
            "ubiquitin protein ligase binding" evidence=IEA] [GO:0032007
            "negative regulation of TOR signaling cascade" evidence=IEA]
            [GO:0032364 "oxygen homeostasis" evidence=IEA] [GO:0032909
            "regulation of transforming growth factor beta2 production"
            evidence=IEA] [GO:0032963 "collagen metabolic process"
            evidence=IEA] [GO:0035035 "histone acetyltransferase binding"
            evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IEA]
            [GO:0035774 "positive regulation of insulin secretion involved in
            cellular response to glucose stimulus" evidence=IEA] [GO:0042541
            "hemoglobin biosynthetic process" evidence=IEA] [GO:0042593
            "glucose homeostasis" evidence=IEA] [GO:0042826 "histone
            deacetylase binding" evidence=IEA] [GO:0043524 "negative regulation
            of neuron apoptotic process" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0043619
            "regulation of transcription from RNA polymerase II promoter in
            response to oxidative stress" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0045648 "positive regulation of erythrocyte differentiation"
            evidence=IEA] [GO:0045926 "negative regulation of growth"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001321
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005737 GO:GO:0030154 GO:GO:0005730 GO:GO:0035774
            GO:GO:0006110 GO:GO:0043565 GO:GO:0071456 GO:GO:0043524
            GO:GO:0010575 GO:GO:0050790 GO:GO:0042593 GO:GO:0032007
            GO:GO:0006879 GO:GO:0005667 GO:GO:0003705 GO:GO:0042127
            GO:GO:0001077 GO:GO:0044212 GO:GO:0004871 GO:GO:0046716
            GO:GO:0009434 GO:GO:0045926 GO:GO:0019896 GO:GO:0045648
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0014850
            GO:GO:0030949 GO:GO:0071347 GO:GO:0010634 GO:GO:0046886
            GO:GO:0043619 GO:GO:0030502 GO:GO:0042541 GO:GO:0000988
            GO:GO:0006089 GO:GO:0010870 GO:GO:0032364 InterPro:IPR014887
            InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            GeneTree:ENSGT00650000093281 OMA:QNAQRKR GO:GO:0001922
            GO:GO:0051541 GO:GO:2001054 GO:GO:0032909 EMBL:AADN02003885
            EMBL:AADN02003886 IPI:IPI00822528 Ensembl:ENSGALT00000037380
            ArrayExpress:F1NQK5 Uniprot:F1NQK5
        Length = 811

 Score = 173 (66.0 bits), Expect = 5.9e-12, P = 5.9e-12
 Identities = 33/90 (36%), Positives = 56/90 (62%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKQGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + V+S   ++++D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVLS--GIVQKD 349


>UNIPROTKB|Q9YIB9 [details] [associations]
            symbol:HIF1A "Hypoxia-inducible factor 1-alpha"
            species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0001666
            "response to hypoxia" evidence=ISS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0035035 "histone
            acetyltransferase binding" evidence=ISS] InterPro:IPR000014
            InterPro:IPR001321 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PRINTS:PR01080
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045893 GO:GO:0003677 GO:GO:0001666 GO:GO:0003700
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            SUPFAM:SSF47459 GO:GO:0035035 eggNOG:NOG289264 HOGENOM:HOG000234306
            HOVERGEN:HBG060456 InterPro:IPR014887 InterPro:IPR021537
            Pfam:PF11413 Pfam:PF08778 OrthoDB:EOG40CHGP EMBL:AB013746
            IPI:IPI00597728 PIR:JC7619 RefSeq:NP_989628.1 UniGene:Gga.4933
            ProteinModelPortal:Q9YIB9 SMR:Q9YIB9 STRING:Q9YIB9 PRIDE:Q9YIB9
            GeneID:374177 KEGG:gga:374177 CTD:3091 KO:K08268 NextBio:20813683
            Uniprot:Q9YIB9
        Length = 811

 Score = 173 (66.0 bits), Expect = 5.9e-12, P = 5.9e-12
 Identities = 33/90 (36%), Positives = 56/90 (62%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKQGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD 116
              + Y+  NS+P+ IVC + V+S   ++++D
Sbjct:   322 TVIYNTKNSQPQCIVCVNYVLS--GIVQKD 349


>RGD|61928 [details] [associations]
            symbol:Hif1a "hypoxia-inducible factor 1, alpha subunit (basic
           helix-loop-helix transcription factor)" species:10116 "Rattus
           norvegicus" [GO:0000988 "protein binding transcription factor
           activity" evidence=IEA;ISO] [GO:0001076 "RNA polymerase II
           transcription factor binding transcription factor activity"
           evidence=ISO] [GO:0001077 "RNA polymerase II core promoter proximal
           region sequence-specific DNA binding transcription factor activity
           involved in positive regulation of transcription" evidence=IEA;ISO]
           [GO:0001525 "angiogenesis" evidence=IEA;ISO] [GO:0001568 "blood
           vessel development" evidence=ISO] [GO:0001666 "response to hypoxia"
           evidence=ISO;ISS;IDA] [GO:0001755 "neural crest cell migration"
           evidence=IEA;ISO] [GO:0001837 "epithelial to mesenchymal transition"
           evidence=IEA;ISO] [GO:0001892 "embryonic placenta development"
           evidence=IEA;ISO] [GO:0001922 "B-1 B cell homeostasis"
           evidence=IEA;ISO] [GO:0001944 "vasculature development"
           evidence=ISO] [GO:0001947 "heart looping" evidence=IEA;ISO]
           [GO:0002052 "positive regulation of neuroblast proliferation"
           evidence=IEA;ISO] [GO:0002248 "connective tissue replacement
           involved in inflammatory response wound healing" evidence=IEA;ISO]
           [GO:0003151 "outflow tract morphogenesis" evidence=IEA;ISO]
           [GO:0003208 "cardiac ventricle morphogenesis" evidence=IEA;ISO]
           [GO:0003677 "DNA binding" evidence=ISO] [GO:0003690 "double-stranded
           DNA binding" evidence=TAS] [GO:0003700 "sequence-specific DNA
           binding transcription factor activity" evidence=IEA;ISO] [GO:0003705
           "RNA polymerase II distal enhancer sequence-specific DNA binding
           transcription factor activity" evidence=IEA;ISO] [GO:0004871 "signal
           transducer activity" evidence=IEA] [GO:0005634 "nucleus"
           evidence=ISO;ISS;IDA;TAS] [GO:0005667 "transcription factor complex"
           evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
           [GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA] [GO:0006089 "lactate
           metabolic process" evidence=IEA;ISO] [GO:0006110 "regulation of
           glycolysis" evidence=IEA;ISO] [GO:0006351 "transcription,
           DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
           transcription, DNA-dependent" evidence=ISO;TAS] [GO:0006879
           "cellular iron ion homeostasis" evidence=IEA;ISO] [GO:0007165
           "signal transduction" evidence=ISO] [GO:0007595 "lactation"
           evidence=IEA;ISO] [GO:0008134 "transcription factor binding"
           evidence=IEA;ISO] [GO:0008284 "positive regulation of cell
           proliferation" evidence=IMP] [GO:0008542 "visual learning"
           evidence=IEA;ISO] [GO:0009612 "response to mechanical stimulus"
           evidence=IEP] [GO:0009749 "response to glucose stimulus"
           evidence=IEP] [GO:0010468 "regulation of gene expression"
           evidence=ISO] [GO:0010573 "vascular endothelial growth factor
           production" evidence=IEA;ISO] [GO:0010575 "positive regulation
           vascular endothelial growth factor production" evidence=IEA;ISO]
           [GO:0010634 "positive regulation of epithelial cell migration"
           evidence=IEA;ISO] [GO:0010870 "positive regulation of receptor
           biosynthetic process" evidence=IEA;ISO] [GO:0014850 "response to
           muscle activity" evidence=IEA;ISO] [GO:0019896 "axon transport of
           mitochondrion" evidence=IEA;ISO;ISS] [GO:0019899 "enzyme binding"
           evidence=ISO] [GO:0019901 "protein kinase binding" evidence=IEA;ISO]
           [GO:0021502 "neural fold elevation formation" evidence=IEA;ISO]
           [GO:0021987 "cerebral cortex development" evidence=IEA;ISO]
           [GO:0030154 "cell differentiation" evidence=ISO] [GO:0030502
           "negative regulation of bone mineralization" evidence=IEA;ISO]
           [GO:0030949 "positive regulation of vascular endothelial growth
           factor receptor signaling pathway" evidence=IEA;ISO] [GO:0031514
           "motile cilium" evidence=ISO] [GO:0031625 "ubiquitin protein ligase
           binding" evidence=IEA;ISO] [GO:0032007 "negative regulation of TOR
           signaling cascade" evidence=IEA;ISO] [GO:0032364 "oxygen
           homeostasis" evidence=IEA;ISO] [GO:0032403 "protein complex binding"
           evidence=IPI] [GO:0032869 "cellular response to insulin stimulus"
           evidence=IEP] [GO:0032909 "regulation of transforming growth factor
           beta2 production" evidence=IEA;ISO] [GO:0032963 "collagen metabolic
           process" evidence=IEA;ISO] [GO:0034244 "negative regulation of
           transcription elongation from RNA polymerase II promoter"
           evidence=IMP] [GO:0035035 "histone acetyltransferase binding"
           evidence=IEA;ISO;ISS] [GO:0035162 "embryonic hemopoiesis"
           evidence=IEA;ISO] [GO:0035774 "positive regulation of insulin
           secretion involved in cellular response to glucose stimulus"
           evidence=IEA;ISO] [GO:0042127 "regulation of cell proliferation"
           evidence=ISO] [GO:0042541 "hemoglobin biosynthetic process"
           evidence=IEA;ISO] [GO:0042593 "glucose homeostasis"
           evidence=IEA;ISO] [GO:0042826 "histone deacetylase binding"
           evidence=IEA;ISO] [GO:0042981 "regulation of apoptotic process"
           evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
           evidence=IMP] [GO:0043066 "negative regulation of apoptotic process"
           evidence=ISO;IMP] [GO:0043524 "negative regulation of neuron
           apoptotic process" evidence=IEA;ISO] [GO:0043565 "sequence-specific
           DNA binding" evidence=IEA;ISO;IDA] [GO:0043619 "regulation of
           transcription from RNA polymerase II promoter in response to
           oxidative stress" evidence=IEA;ISO;IMP] [GO:0043627 "response to
           estrogen stimulus" evidence=IEP] [GO:0044212 "transcription
           regulatory region DNA binding" evidence=IEA;ISO;ISS] [GO:0045648
           "positive regulation of erythrocyte differentiation"
           evidence=IEA;ISO] [GO:0045893 "positive regulation of transcription,
           DNA-dependent" evidence=ISO;ISS] [GO:0045906 "negative regulation of
           vasoconstriction" evidence=IMP] [GO:0045926 "negative regulation of
           growth" evidence=IEA;ISO] [GO:0045944 "positive regulation of
           transcription from RNA polymerase II promoter" evidence=ISO;IDA;IMP]
           [GO:0046716 "muscle cell homeostasis" evidence=IEA;ISO] [GO:0046886
           "positive regulation of hormone biosynthetic process"
           evidence=IEA;ISO] [GO:0046982 "protein heterodimerization activity"
           evidence=ISO;ISS;IDA] [GO:0046983 "protein dimerization activity"
           evidence=IEA] [GO:0048514 "blood vessel morphogenesis" evidence=ISO]
           [GO:0048546 "digestive tract morphogenesis" evidence=IEA;ISO]
           [GO:0048661 "positive regulation of smooth muscle cell
           proliferation" evidence=IMP] [GO:0050790 "regulation of catalytic
           activity" evidence=IEA;ISO] [GO:0051216 "cartilage development"
           evidence=IEA;ISO] [GO:0051541 "elastin metabolic process"
           evidence=IEA;ISO] [GO:0051879 "Hsp90 protein binding"
           evidence=IEA;ISO] [GO:0060135 "maternal process involved in female
           pregnancy" evidence=IEP] [GO:0060574 "intestinal epithelial cell
           maturation" evidence=IEA;ISO] [GO:0061030 "epithelial cell
           differentiation involved in mammary gland alveolus development"
           evidence=IEA;ISO] [GO:0061298 "retina vasculature development in
           camera-type eye" evidence=IEA;ISO] [GO:0061419 "positive regulation
           of transcription from RNA polymerase II promoter in response to
           hypoxia" evidence=IEA;ISO] [GO:0071222 "cellular response to
           lipopolysaccharide" evidence=IEP] [GO:0071347 "cellular response to
           interleukin-1" evidence=IEA;ISO] [GO:0071407 "cellular response to
           organic cyclic compound" evidence=IEP] [GO:0071456 "cellular
           response to hypoxia" evidence=ISO;ISS] [GO:0071542 "dopaminergic
           neuron differentiation" evidence=IEA;ISO] [GO:2001054 "negative
           regulation of mesenchymal cell apoptotic process" evidence=IEA;ISO]
           [GO:2001141 "regulation of RNA biosynthetic process" evidence=ISO]
           InterPro:IPR000014 InterPro:IPR001321 InterPro:IPR011598
           InterPro:IPR013655 Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112
           PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
           InterPro:IPR001610 RGD:61928 GO:GO:0005634 GO:GO:0005737
           GO:GO:0043066 GO:GO:0009612 GO:GO:0032869 GO:GO:0060135
           GO:GO:0009749 GO:GO:0048661 GO:GO:0045944 GO:GO:0071456
           GO:GO:0003700 GO:GO:0006351 GO:GO:0071222 GO:GO:0044212
           GO:GO:0043065 GO:GO:0004871 GO:GO:0003690 GO:GO:0019896
           GO:GO:0046982 GO:GO:0043627 GO:GO:0045906 SMART:SM00086
           TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0071407 GO:GO:0035035
           GO:GO:0034244 eggNOG:NOG289264 HOGENOM:HOG000234306
           HOVERGEN:HBG060456 InterPro:IPR014887 InterPro:IPR021537
           Pfam:PF11413 Pfam:PF08778 CTD:3091 KO:K08268 EMBL:Y09507
           EMBL:AF057308 IPI:IPI00951313 PIR:JC5809 RefSeq:NP_077335.1
           UniGene:Rn.10852 ProteinModelPortal:O35800 SMR:O35800
           MINT:MINT-235713 STRING:O35800 PRIDE:O35800 GeneID:29560
           KEGG:rno:29560 UCSC:RGD:61928 NextBio:609610 ArrayExpress:O35800
           Genevestigator:O35800 GermOnline:ENSRNOG00000008292 Uniprot:O35800
        Length = 825

 Score = 173 (66.0 bits), Expect = 6.1e-12, P = 6.1e-12
 Identities = 37/114 (32%), Positives = 66/114 (57%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTIKM 140
              + Y+  +S+P+ IVC + VVS   +++ D   +   ++  +   P +S+ +KM
Sbjct:   322 TVIYNTKDSQPQCIVCVNYVVS--GIIQHD--LIFSLQQTESVLKPVESSDMKM 371


>UNIPROTKB|O35800 [details] [associations]
            symbol:Hif1a "Hypoxia-inducible factor 1-alpha"
            species:10116 "Rattus norvegicus" [GO:0004871 "signal transducer
            activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR001321
            InterPro:IPR011598 InterPro:IPR013655 Pfam:PF08447 PRINTS:PR01080
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 RGD:61928 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043066 GO:GO:0009612 GO:GO:0032869
            GO:GO:0060135 GO:GO:0009749 GO:GO:0048661 GO:GO:0045944
            GO:GO:0071456 GO:GO:0003700 GO:GO:0006351 GO:GO:0071222
            GO:GO:0044212 GO:GO:0043065 GO:GO:0004871 GO:GO:0003690
            GO:GO:0019896 GO:GO:0046982 GO:GO:0043627 GO:GO:0045906
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0071407
            GO:GO:0035035 GO:GO:0034244 eggNOG:NOG289264 HOGENOM:HOG000234306
            HOVERGEN:HBG060456 InterPro:IPR014887 InterPro:IPR021537
            Pfam:PF11413 Pfam:PF08778 CTD:3091 KO:K08268 EMBL:Y09507
            EMBL:AF057308 IPI:IPI00951313 PIR:JC5809 RefSeq:NP_077335.1
            UniGene:Rn.10852 ProteinModelPortal:O35800 SMR:O35800
            MINT:MINT-235713 STRING:O35800 PRIDE:O35800 GeneID:29560
            KEGG:rno:29560 UCSC:RGD:61928 NextBio:609610 ArrayExpress:O35800
            Genevestigator:O35800 GermOnline:ENSRNOG00000008292 Uniprot:O35800
        Length = 825

 Score = 173 (66.0 bits), Expect = 6.1e-12, P = 6.1e-12
 Identities = 37/114 (32%), Positives = 66/114 (57%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTIKM 140
              + Y+  +S+P+ IVC + VVS   +++ D   +   ++  +   P +S+ +KM
Sbjct:   322 TVIYNTKDSQPQCIVCVNYVVS--GIIQHD--LIFSLQQTESVLKPVESSDMKM 371


>UNIPROTKB|Q9I8T7 [details] [associations]
            symbol:ARNTL "Aryl hydrocarbon receptor nuclear
            translocator-like protein 1" species:9031 "Gallus gallus"
            [GO:0004871 "signal transducer activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000060 "protein import into nucleus,
            translocation" evidence=IEA] [GO:0000982 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0001190 "RNA
            polymerase II transcription factor binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0016604 "nuclear
            body" evidence=IEA] [GO:0017162 "aryl hydrocarbon receptor binding"
            evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
            evidence=IEA] [GO:0042176 "regulation of protein catabolic process"
            evidence=IEA] [GO:0043425 "bHLH transcription factor binding"
            evidence=IEA] [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0051879 "Hsp90 protein binding" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005737 GO:GO:0003677 GO:GO:0007623 GO:GO:0005667
            GO:GO:0000060 GO:GO:0004871 GO:GO:0000982 SMART:SM00086
            TIGRFAMs:TIGR00229 GO:GO:0001190 eggNOG:NOG293303
            GeneTree:ENSGT00650000092935 HOGENOM:HOG000234379
            Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956 GO:GO:0042176
            EMBL:AF205219 EMBL:AF246957 IPI:IPI00577807 RefSeq:NP_001001463.1
            UniGene:Gga.1329 ProteinModelPortal:Q9I8T7 STRING:Q9I8T7
            Ensembl:ENSGALT00000032732 GeneID:374115 KEGG:gga:374115 CTD:406
            HOVERGEN:HBG107503 InParanoid:Q9I8T7 KO:K02296 OMA:EKINTNC
            OrthoDB:EOG4NS3B2 NextBio:20813631 ArrayExpress:Q9I8T7
            Uniprot:Q9I8T7
        Length = 633

 Score = 171 (65.3 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 36/90 (40%), Positives = 55/90 (61%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   361 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 419

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVS 108
             +I L++R++   + W  + E+IV T+ VVS
Sbjct:   420 FITLRSRWFSFMNPWTKEVEYIVSTNTVVS 449


>ZFIN|ZDB-GENE-030408-1 [details] [associations]
            symbol:arntl1b "aryl hydrocarbon receptor nuclear
            translocator-like 1b" species:7955 "Danio rerio" [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA;IPI] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0007165 "signal transduction" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
            [GO:0009648 "photoperiodism" evidence=IEP] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 ZFIN:ZDB-GENE-030408-1
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GO:GO:0009648 EMBL:CR318647 IPI:IPI00859492
            Ensembl:ENSDART00000098259 OMA:REKINTH Uniprot:E7F4H0
        Length = 646

 Score = 171 (65.3 bits), Expect = 6.9e-12, P = 6.9e-12
 Identities = 36/90 (40%), Positives = 54/90 (60%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGE--GTSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T CY +F  K   
Sbjct:   380 DQRATAILAYLPQELLGTSFYEYFHQDDIGHLAECHRQVLQMREKINTHCY-KFKIKDGS 438

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVS 108
             +I L++R++   + W  + E+IV T+ VVS
Sbjct:   439 FITLRSRWFSFMNPWTKEVEYIVSTNTVVS 468


>UNIPROTKB|F8W6J9 [details] [associations]
            symbol:ARNTL "Aryl hydrocarbon receptor nuclear
            translocator-like protein 1" species:9606 "Homo sapiens"
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005667 GO:GO:0004871 SMART:SM00086
            TIGRFAMs:TIGR00229 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC016884
            EMBL:AC022878 IPI:IPI00217732 HGNC:HGNC:701
            ProteinModelPortal:F8W6J9 SMR:F8W6J9 Ensembl:ENST00000389708
            ArrayExpress:F8W6J9 Bgee:F8W6J9 Uniprot:F8W6J9
        Length = 526

 Score = 167 (63.8 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 35/89 (39%), Positives = 54/89 (60%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG--TSCYYRFLTKGQQ 78
             D  A  I+ YLP E+LGTS Y+Y+H DD+  +  CH  ++Q  E   T+CY +F  K   
Sbjct:   354 DQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY-KFKIKDGS 412

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVV 107
             +I L++R++   + W  + E+IV T+ VV
Sbjct:   413 FITLRSRWFSFMNPWTKEVEYIVSTNTVV 441


>UNIPROTKB|F1S5K9 [details] [associations]
            symbol:EPAS1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048625 "myoblast cell fate commitment" evidence=IEA]
            [GO:0048469 "cell maturation" evidence=IEA] [GO:0046982 "protein
            heterodimerization activity" evidence=IEA] [GO:0043619 "regulation
            of transcription from RNA polymerase II promoter in response to
            oxidative stress" evidence=IEA] [GO:0043129 "surfactant
            homeostasis" evidence=IEA] [GO:0042415 "norepinephrine metabolic
            process" evidence=IEA] [GO:0035035 "histone acetyltransferase
            binding" evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
            [GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0007601 "visual
            perception" evidence=IEA] [GO:0007005 "mitochondrion organization"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0002027 "regulation of heart rate"
            evidence=IEA] [GO:0001974 "blood vessel remodeling" evidence=IEA]
            [GO:0001892 "embryonic placenta development" evidence=IEA]
            [GO:0001525 "angiogenesis" evidence=IEA] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677 GO:GO:0030324
            GO:GO:0007601 GO:GO:0001525 GO:GO:0005667 GO:GO:0001077
            GO:GO:0004871 GO:GO:0001974 GO:GO:0030218 SMART:SM00086
            TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0007005 GO:GO:0002027
            GO:GO:0001892 GO:GO:0043619 GO:GO:0042415 GO:GO:0048469
            GO:GO:0043129 OMA:QYQDYSL GO:GO:0048625 InterPro:IPR014887
            InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            GeneTree:ENSGT00650000093281 EMBL:CU570958
            Ensembl:ENSSSCT00000009245 Uniprot:F1S5K9
        Length = 863

 Score = 168 (64.2 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 34/96 (35%), Positives = 55/96 (57%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     +IGY P E+LG S Y++YH  D +++   H+ L  KG+  S  YR L 
Sbjct:   244 MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLA 303

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             K   ++WL+T+  + Y+  N +P+ I+C + V+S +
Sbjct:   304 KHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEI 339


>UNIPROTKB|Q99814 [details] [associations]
            symbol:EPAS1 "Endothelial PAS domain-containing protein 1"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0001077 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=IEA] [GO:0001525 "angiogenesis"
            evidence=IEA] [GO:0001892 "embryonic placenta development"
            evidence=IEA] [GO:0001974 "blood vessel remodeling" evidence=IEA]
            [GO:0002027 "regulation of heart rate" evidence=IEA] [GO:0007005
            "mitochondrion organization" evidence=IEA] [GO:0007601 "visual
            perception" evidence=IEA] [GO:0030218 "erythrocyte differentiation"
            evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
            [GO:0042415 "norepinephrine metabolic process" evidence=IEA]
            [GO:0043129 "surfactant homeostasis" evidence=IEA] [GO:0043619
            "regulation of transcription from RNA polymerase II promoter in
            response to oxidative stress" evidence=IEA] [GO:0048469 "cell
            maturation" evidence=IEA] [GO:0035035 "histone acetyltransferase
            binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0001666 "response to hypoxia" evidence=IDA] [GO:0003677 "DNA
            binding" evidence=IGI] [GO:0005667 "transcription factor complex"
            evidence=IDA;IPI] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IGI] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=TAS]
            [GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
            "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0033554 "cellular response to stress" evidence=TAS] [GO:0061418
            "regulation of transcription from RNA polymerase II promoter in
            response to hypoxia" evidence=TAS] [GO:0071456 "cellular response
            to hypoxia" evidence=TAS] [GO:0008134 "transcription factor
            binding" evidence=IPI] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0046982 "protein heterodimerization activity"
            evidence=IPI] [GO:0048625 "myoblast cell fate commitment"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112
            PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 Reactome:REACT_120956 GO:GO:0005829
            GO:GO:0007165 GO:GO:0003677 GO:GO:0030324 GO:GO:0007601
            GO:GO:0043565 GO:GO:0045944 GO:GO:0001525 GO:GO:0005667
            GO:GO:0001077 GO:GO:0006366 GO:GO:0004871 GO:GO:0001974
            GO:GO:0030218 SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            GO:GO:0007005 Pathway_Interaction_DB:vegfr1_2_pathway GO:GO:0002027
            PDB:2A24 PDB:3F1N PDB:3F1O PDB:3F1P PDB:3H7W PDB:3H82 PDBsum:2A24
            PDBsum:3F1N PDBsum:3F1O PDBsum:3F1P PDBsum:3H7W PDBsum:3H82
            GO:GO:0001892 GO:GO:0061418 GO:GO:0043619 GO:GO:0042415
            GO:GO:0048469 GO:GO:0043129 Orphanet:247511 EMBL:U81984 EMBL:U51626
            EMBL:BC051338 IPI:IPI00294084 RefSeq:NP_001421.2 UniGene:Hs.468410
            PDB:1P97 PDBsum:1P97 ProteinModelPortal:Q99814 SMR:Q99814
            DIP:DIP-32857N IntAct:Q99814 MINT:MINT-1199606 STRING:Q99814
            PhosphoSite:Q99814 DMDM:32470617 PRIDE:Q99814
            Ensembl:ENST00000263734 GeneID:2034 KEGG:hsa:2034 UCSC:uc002ruv.3
            CTD:2034 GeneCards:GC02P046436 HGNC:HGNC:3374 HPA:CAB012248
            MIM:603349 MIM:611783 neXtProt:NX_Q99814 PharmGKB:PA27809
            eggNOG:NOG289264 HOGENOM:HOG000234306 HOVERGEN:HBG060456
            InParanoid:Q99814 KO:K09095 OMA:QYQDYSL OrthoDB:EOG4XPQF6
            PhylomeDB:Q99814 BindingDB:Q99814 ChEMBL:CHEMBL1744522
            ChiTaRS:EPAS1 EvolutionaryTrace:Q99814 GenomeRNAi:2034 NextBio:8255
            ArrayExpress:Q99814 Bgee:Q99814 CleanEx:HS_EPAS1
            Genevestigator:Q99814 GermOnline:ENSG00000116016 GO:GO:0048625
            InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            Uniprot:Q99814
        Length = 870

 Score = 168 (64.2 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 34/96 (35%), Positives = 55/96 (57%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     +IGY P E+LG S Y++YH  D +++   H+ L  KG+  S  YR L 
Sbjct:   252 MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLA 311

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             K   ++WL+T+  + Y+  N +P+ I+C + V+S +
Sbjct:   312 KHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEI 347


>ZFIN|ZDB-GENE-040426-706 [details] [associations]
            symbol:hif1ab "hypoxia-inducible factor 1, alpha
            subunit (basic helix-loop-helix transcription factor) b"
            species:7955 "Danio rerio" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0004871 "signal transducer activity" evidence=IEA] [GO:0007165
            "signal transduction" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IGI]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001321 InterPro:IPR011598 InterPro:IPR013655
            Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            ZFIN:ZDB-GENE-040426-706 GO:GO:0005634 GO:GO:0003677 GO:GO:0051402
            GO:GO:0003700 GO:GO:0006351 GO:GO:0004871 SMART:SM00086
            TIGRFAMs:TIGR00229 SUPFAM:SSF47459 eggNOG:NOG289264
            HOGENOM:HOG000234306 HOVERGEN:HBG060456 InterPro:IPR014887
            InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            GeneTree:ENSGT00650000093281 OrthoDB:EOG40CHGP OMA:QNAQRKR
            EMBL:BX255914 EMBL:AY326951 IPI:IPI00491851 UniGene:Dr.75612
            SMR:Q6EHI4 STRING:Q6EHI4 Ensembl:ENSDART00000018500
            InParanoid:Q6EHI4 Uniprot:Q6EHI4
        Length = 777

 Score = 167 (63.8 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 31/82 (37%), Positives = 50/82 (60%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P ++L  S Y+YYH  D D +   H  L  KG+ T+  YR L K   ++W++T+ 
Sbjct:   262 LMGYEPDDLLNRSVYEYYHALDSDHLTKTHHNLFAKGQATTGQYRMLAKKGGFVWVETQA 321

Query:    87 YITYHQWNSKPEFIVCTHRVVS 108
              + Y+  NS+P+ IVC + V+S
Sbjct:   322 TVIYNPKNSQPQCIVCVNYVLS 343


>UNIPROTKB|Q9I8A9 [details] [associations]
            symbol:hif1a "Hypoxia-inducible factor 1-alpha"
            species:8355 "Xenopus laevis" [GO:0001666 "response to hypoxia"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0035035
            "histone acetyltransferase binding" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            InterPro:IPR000014 InterPro:IPR001321 InterPro:IPR011598
            InterPro:IPR013655 Pfam:PF08447 PRINTS:PR01080 PROSITE:PS50112
            PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893
            GO:GO:0003677 GO:GO:0001666 GO:GO:0003700 GO:GO:0006351
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0035035
            HOVERGEN:HBG060456 InterPro:IPR014887 InterPro:IPR021537
            Pfam:PF11413 Pfam:PF08778 EMBL:AJ277829 RefSeq:NP_001165655.1
            UniGene:Xl.4589 ProteinModelPortal:Q9I8A9 SMR:Q9I8A9
            GeneID:100337573 KEGG:xla:100337573 Uniprot:Q9I8A9
        Length = 805

 Score = 167 (63.8 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 38/114 (33%), Positives = 65/114 (57%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y+YYH  D D +   +  +  KG+ T+  YR L K   ++W++T+ 
Sbjct:   263 LVGYEPDELLGRSVYEYYHALDSDHLTKPNYNMFTKGQVTTGQYRMLAKKGGYVWVETQA 322

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTIKM 140
              + Y+  NS+P+ IVC + V+S   V+ +D   +    + ++   P +S  IKM
Sbjct:   323 TVIYNSKNSQPQCIVCVNYVLS--EVVEKD--LILSLGQTASVLIPVESQEIKM 372


>UNIPROTKB|F1NG41 [details] [associations]
            symbol:EPAS1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0004871 "signal transducer activity" evidence=IEA]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IEA]
            [GO:0001525 "angiogenesis" evidence=IEA] [GO:0001892 "embryonic
            placenta development" evidence=IEA] [GO:0001974 "blood vessel
            remodeling" evidence=IEA] [GO:0002027 "regulation of heart rate"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0007005 "mitochondrion organization"
            evidence=IEA] [GO:0007601 "visual perception" evidence=IEA]
            [GO:0008134 "transcription factor binding" evidence=IEA]
            [GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0030324
            "lung development" evidence=IEA] [GO:0035035 "histone
            acetyltransferase binding" evidence=IEA] [GO:0042415
            "norepinephrine metabolic process" evidence=IEA] [GO:0043129
            "surfactant homeostasis" evidence=IEA] [GO:0043619 "regulation of
            transcription from RNA polymerase II promoter in response to
            oxidative stress" evidence=IEA] [GO:0046982 "protein
            heterodimerization activity" evidence=IEA] [GO:0048469 "cell
            maturation" evidence=IEA] [GO:0048625 "myoblast cell fate
            commitment" evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0030154 GO:GO:0003677
            GO:GO:0005667 GO:GO:0001077 GO:GO:0004871 SMART:SM00086
            TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0007005 GO:GO:0002027
            GO:GO:0043619 GO:GO:0042415 OMA:QYQDYSL InterPro:IPR014887
            InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            GeneTree:ENSGT00650000093281 EMBL:AADN02011973 IPI:IPI00572997
            Ensembl:ENSGALT00000016253 ArrayExpress:F1NG41 Uniprot:F1NG41
        Length = 859

 Score = 167 (63.8 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 33/96 (34%), Positives = 55/96 (57%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     +IGY P E+LG S Y++YH  D +++   H+ L  KG+  +  YR L 
Sbjct:   243 MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVTGQYRMLA 302

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             K   ++WL+T+  + Y+  N +P+ I+C + V+S +
Sbjct:   303 KHGGYVWLETQGTVIYNTRNLQPQCIICVNYVLSEI 338


>UNIPROTKB|E2QUK0 [details] [associations]
            symbol:EPAS1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0048625 "myoblast cell fate commitment"
            evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            [GO:0043619 "regulation of transcription from RNA polymerase II
            promoter in response to oxidative stress" evidence=IEA] [GO:0043129
            "surfactant homeostasis" evidence=IEA] [GO:0042415 "norepinephrine
            metabolic process" evidence=IEA] [GO:0035035 "histone
            acetyltransferase binding" evidence=IEA] [GO:0030324 "lung
            development" evidence=IEA] [GO:0030218 "erythrocyte
            differentiation" evidence=IEA] [GO:0008134 "transcription factor
            binding" evidence=IEA] [GO:0007601 "visual perception"
            evidence=IEA] [GO:0007005 "mitochondrion organization"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0002027 "regulation of heart rate"
            evidence=IEA] [GO:0001974 "blood vessel remodeling" evidence=IEA]
            [GO:0001892 "embryonic placenta development" evidence=IEA]
            [GO:0001525 "angiogenesis" evidence=IEA] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0030324 GO:GO:0007601 GO:GO:0001525 GO:GO:0005667
            GO:GO:0001077 GO:GO:0004871 GO:GO:0001974 GO:GO:0030218
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0007005
            GO:GO:0002027 GO:GO:0001892 GO:GO:0043619 GO:GO:0042415
            GO:GO:0048469 GO:GO:0043129 OMA:QYQDYSL GO:GO:0048625
            InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            GeneTree:ENSGT00650000093281 EMBL:AAEX03007490
            Ensembl:ENSCAFT00000004132 Uniprot:E2QUK0
        Length = 869

 Score = 167 (63.8 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 33/96 (34%), Positives = 55/96 (57%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     ++GY P E+LG S Y++YH  D +++   H+ L  KG+  S  YR L 
Sbjct:   252 MKFTYCDDRITELVGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLA 311

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             K   ++WL+T+  + Y+  N +P+ I+C + V+S +
Sbjct:   312 KHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEI 347


>UNIPROTKB|A5PJT1 [details] [associations]
            symbol:EPAS1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0048625 "myoblast cell fate commitment" evidence=IEA]
            [GO:0048469 "cell maturation" evidence=IEA] [GO:0046982 "protein
            heterodimerization activity" evidence=IEA] [GO:0043619 "regulation
            of transcription from RNA polymerase II promoter in response to
            oxidative stress" evidence=IEA] [GO:0043129 "surfactant
            homeostasis" evidence=IEA] [GO:0042415 "norepinephrine metabolic
            process" evidence=IEA] [GO:0035035 "histone acetyltransferase
            binding" evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
            [GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0007601 "visual
            perception" evidence=IEA] [GO:0007005 "mitochondrion organization"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0002027 "regulation of heart rate"
            evidence=IEA] [GO:0001974 "blood vessel remodeling" evidence=IEA]
            [GO:0001892 "embryonic placenta development" evidence=IEA]
            [GO:0001525 "angiogenesis" evidence=IEA] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677 GO:GO:0030324
            GO:GO:0007601 GO:GO:0001525 GO:GO:0005667 GO:GO:0001077
            GO:GO:0004871 GO:GO:0001974 GO:GO:0030218 SMART:SM00086
            TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0007005 GO:GO:0002027
            GO:GO:0001892 GO:GO:0043619 GO:GO:0042415 GO:GO:0048469
            GO:GO:0043129 HOGENOM:HOG000234306 HOVERGEN:HBG060456 OMA:QYQDYSL
            GO:GO:0048625 InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413
            Pfam:PF08778 GeneTree:ENSGT00650000093281 EMBL:DAAA02030718
            EMBL:DAAA02030719 EMBL:BC142229 IPI:IPI00718553 UniGene:Bt.45570
            SMR:A5PJT1 STRING:A5PJT1 Ensembl:ENSBTAT00000004836
            InParanoid:A5PJT1 Uniprot:A5PJT1
        Length = 870

 Score = 167 (63.8 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 33/96 (34%), Positives = 55/96 (57%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     ++GY P E+LG S Y++YH  D +++   H+ L  KG+  S  YR L 
Sbjct:   252 MKFTYCDDRITELVGYHPQELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLA 311

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             K   ++WL+T+  + Y+  N +P+ I+C + V+S +
Sbjct:   312 KHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEI 347


>MGI|MGI:109169 [details] [associations]
            symbol:Epas1 "endothelial PAS domain protein 1" species:10090
            "Mus musculus" [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=IDA] [GO:0001525 "angiogenesis" evidence=IMP] [GO:0001666
            "response to hypoxia" evidence=ISO;IMP] [GO:0001892 "embryonic
            placenta development" evidence=IGI] [GO:0001974 "blood vessel
            remodeling" evidence=IMP] [GO:0002027 "regulation of heart rate"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=IGI;ISO;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISO;IDA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005667 "transcription factor complex" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006979 "response to oxidative stress" evidence=IGI;IMP]
            [GO:0007005 "mitochondrion organization" evidence=IMP] [GO:0007165
            "signal transduction" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0007601 "visual
            perception" evidence=IMP] [GO:0008134 "transcription factor
            binding" evidence=ISO;IPI] [GO:0030097 "hemopoiesis" evidence=IMP]
            [GO:0030154 "cell differentiation" evidence=IGI] [GO:0030218
            "erythrocyte differentiation" evidence=IMP] [GO:0030324 "lung
            development" evidence=IMP] [GO:0035035 "histone acetyltransferase
            binding" evidence=ISO] [GO:0042415 "norepinephrine metabolic
            process" evidence=IMP] [GO:0043129 "surfactant homeostasis"
            evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISO] [GO:0043619 "regulation of transcription from RNA
            polymerase II promoter in response to oxidative stress"
            evidence=IGI;IMP;IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter"
            evidence=IGI;ISO;IMP;IDA] [GO:0046982 "protein heterodimerization
            activity" evidence=ISO;IPI] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0048469 "cell maturation" evidence=IMP]
            [GO:0048625 "myoblast cell fate commitment" evidence=IMP]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 MGI:MGI:109169
            GO:GO:0005737 GO:GO:0003677 GO:GO:0030324 GO:GO:0007601
            GO:GO:0043565 GO:GO:0001666 GO:GO:0001525 GO:GO:0005667
            GO:GO:0001077 GO:GO:0004871 GO:GO:0001974 GO:GO:0030218
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0007005
            GO:GO:0002027 GO:GO:0035035 GO:GO:0001892 GO:GO:0043619
            GO:GO:0042415 GO:GO:0048469 GO:GO:0043129 CTD:2034 eggNOG:NOG289264
            HOGENOM:HOG000234306 HOVERGEN:HBG060456 KO:K09095 OMA:QYQDYSL
            OrthoDB:EOG4XPQF6 ChiTaRS:EPAS1 GO:GO:0048625 InterPro:IPR014887
            InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778 EMBL:U81983
            EMBL:D89787 EMBL:AF045160 IPI:IPI00312615 RefSeq:NP_034267.3
            UniGene:Mm.1415 ProteinModelPortal:P97481 SMR:P97481 DIP:DIP-46109N
            STRING:P97481 PhosphoSite:P97481 PRIDE:P97481
            Ensembl:ENSMUST00000024954 GeneID:13819 KEGG:mmu:13819
            UCSC:uc008duj.2 GeneTree:ENSGT00650000093281 InParanoid:P97481
            NextBio:284608 Bgee:P97481 CleanEx:MM_EPAS1 Genevestigator:P97481
            GermOnline:ENSMUSG00000024140 Uniprot:P97481
        Length = 874

 Score = 167 (63.8 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 31/84 (36%), Positives = 52/84 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             +IGY P E+LG S Y++YH  D +++   H+ L  KG+  S  YR L K   ++WL+T+ 
Sbjct:   264 LIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQG 323

Query:    87 YITYHQWNSKPEFIVCTHRVVSYV 110
              + Y+  N +P+ I+C + V+S +
Sbjct:   324 TVIYNPRNLQPQCIMCVNYVLSEI 347


>RGD|68404 [details] [associations]
            symbol:Epas1 "endothelial PAS domain protein 1" species:10116
           "Rattus norvegicus" [GO:0001077 "RNA polymerase II core promoter
           proximal region sequence-specific DNA binding transcription factor
           activity involved in positive regulation of transcription"
           evidence=ISO] [GO:0001525 "angiogenesis" evidence=IEA;ISO]
           [GO:0001666 "response to hypoxia" evidence=ISO;IDA;TAS] [GO:0001892
           "embryonic placenta development" evidence=ISO] [GO:0001974 "blood
           vessel remodeling" evidence=ISO] [GO:0002027 "regulation of heart
           rate" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
           [GO:0003700 "sequence-specific DNA binding transcription factor
           activity" evidence=IEA;ISO;IDA] [GO:0004871 "signal transducer
           activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
           [GO:0005667 "transcription factor complex" evidence=IEA;ISO]
           [GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA] [GO:0006351
           "transcription, DNA-dependent" evidence=IEA] [GO:0006979 "response
           to oxidative stress" evidence=ISO] [GO:0007005 "mitochondrion
           organization" evidence=ISO] [GO:0007601 "visual perception"
           evidence=ISO] [GO:0008134 "transcription factor binding"
           evidence=ISO] [GO:0030097 "hemopoiesis" evidence=ISO] [GO:0030154
           "cell differentiation" evidence=IEA;ISO] [GO:0030218 "erythrocyte
           differentiation" evidence=ISO] [GO:0030324 "lung development"
           evidence=ISO] [GO:0035035 "histone acetyltransferase binding"
           evidence=ISO] [GO:0042415 "norepinephrine metabolic process"
           evidence=ISO] [GO:0043129 "surfactant homeostasis" evidence=ISO]
           [GO:0043619 "regulation of transcription from RNA polymerase II
           promoter in response to oxidative stress" evidence=ISO] [GO:0045944
           "positive regulation of transcription from RNA polymerase II
           promoter" evidence=ISO;IDA] [GO:0046982 "protein heterodimerization
           activity" evidence=ISO] [GO:0046983 "protein dimerization activity"
           evidence=IEA] [GO:0048469 "cell maturation" evidence=ISO]
           [GO:0048625 "myoblast cell fate commitment" evidence=ISO]
           [GO:0043565 "sequence-specific DNA binding" evidence=ISO;IDA]
           InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
           InterPro:IPR013655 Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112
           PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
           InterPro:IPR001610 RGD:68404 GO:GO:0005634 GO:GO:0005737
           GO:GO:0003677 GO:GO:0030324 GO:GO:0007601 GO:GO:0001666
           GO:GO:0045944 GO:GO:0003700 GO:GO:0001525 GO:GO:0005667
           GO:GO:0001077 GO:GO:0004871 GO:GO:0001974 GO:GO:0030218
           SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459 GO:GO:0007005
           GO:GO:0002027 GO:GO:0001892 GO:GO:0043619 GO:GO:0042415
           GO:GO:0048469 GO:GO:0043129 CTD:2034 eggNOG:NOG289264
           HOGENOM:HOG000234306 HOVERGEN:HBG060456 KO:K09095 OrthoDB:EOG4XPQF6
           GO:GO:0048625 InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413
           Pfam:PF08778 EMBL:AJ277828 IPI:IPI00199803 RefSeq:NP_075578.1
           UniGene:Rn.55138 ProteinModelPortal:Q9JHS1 SMR:Q9JHS1 STRING:Q9JHS1
           PRIDE:Q9JHS1 GeneID:29452 KEGG:rno:29452 UCSC:RGD:68404
           InParanoid:Q9JHS1 NextBio:609218 ArrayExpress:Q9JHS1
           Genevestigator:Q9JHS1 GermOnline:ENSRNOG00000021318 Uniprot:Q9JHS1
        Length = 874

 Score = 167 (63.8 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 30/84 (35%), Positives = 52/84 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y++YH  D +++   H+ L  KG+  S  YR L K   ++WL+T+ 
Sbjct:   264 LVGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQG 323

Query:    87 YITYHQWNSKPEFIVCTHRVVSYV 110
              + Y+  N +P+ I+C + V+S +
Sbjct:   324 TVVYNPRNLQPQCIMCVNYVLSEI 347


>UNIPROTKB|Q9JHS1 [details] [associations]
            symbol:Epas1 "Endothelial PAS domain-containing protein 1"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 RGD:68404 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0030324 GO:GO:0007601
            GO:GO:0001666 GO:GO:0045944 GO:GO:0003700 GO:GO:0001525
            GO:GO:0005667 GO:GO:0001077 GO:GO:0004871 GO:GO:0001974
            GO:GO:0030218 SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            GO:GO:0007005 GO:GO:0002027 GO:GO:0001892 GO:GO:0043619
            GO:GO:0042415 GO:GO:0048469 GO:GO:0043129 CTD:2034 eggNOG:NOG289264
            HOGENOM:HOG000234306 HOVERGEN:HBG060456 KO:K09095 OrthoDB:EOG4XPQF6
            GO:GO:0048625 InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413
            Pfam:PF08778 EMBL:AJ277828 IPI:IPI00199803 RefSeq:NP_075578.1
            UniGene:Rn.55138 ProteinModelPortal:Q9JHS1 SMR:Q9JHS1 STRING:Q9JHS1
            PRIDE:Q9JHS1 GeneID:29452 KEGG:rno:29452 UCSC:RGD:68404
            InParanoid:Q9JHS1 NextBio:609218 ArrayExpress:Q9JHS1
            Genevestigator:Q9JHS1 GermOnline:ENSRNOG00000021318 Uniprot:Q9JHS1
        Length = 874

 Score = 167 (63.8 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 30/84 (35%), Positives = 52/84 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P E+LG S Y++YH  D +++   H+ L  KG+  S  YR L K   ++WL+T+ 
Sbjct:   264 LVGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQG 323

Query:    87 YITYHQWNSKPEFIVCTHRVVSYV 110
              + Y+  N +P+ I+C + V+S +
Sbjct:   324 TVVYNPRNLQPQCIMCVNYVLSEI 347


>ZFIN|ZDB-GENE-030131-4490 [details] [associations]
            symbol:epas1a "endothelial PAS domain protein 1a"
            species:7955 "Danio rerio" [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 ZFIN:ZDB-GENE-030131-4490 GO:GO:0005737
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            GeneTree:ENSGT00650000093281 EMBL:CR931998 IPI:IPI00499388
            Ensembl:ENSDART00000024415 ArrayExpress:E7FAJ1 Bgee:E7FAJ1
            Uniprot:E7FAJ1
        Length = 842

 Score = 165 (63.1 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 30/84 (35%), Positives = 52/84 (61%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             +IGY P E+LG S Y++ H  D +++   H+ L  KG+  S  YR L K   ++W++T+ 
Sbjct:   263 LIGYRPEELLGRSVYEFCHALDSENMTKSHQNLCNKGQVVSGQYRMLAKNGGYVWVETQA 322

Query:    87 YITYHQWNSKPEFIVCTHRVVSYV 110
              + Y+  NS+P+ I+C + ++S V
Sbjct:   323 TVIYNNRNSQPQCIICINYILSSV 346


>FB|FBgn0004666 [details] [associations]
            symbol:sim "single-minded" species:7227 "Drosophila
            melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0007418
            "ventral midline development" evidence=IMP] [GO:0000978 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0000982 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IPI]
            [GO:0046982 "protein heterodimerization activity" evidence=IPI]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS;IPI] [GO:0007417 "central nervous system
            development" evidence=NAS] [GO:0007398 "ectoderm development"
            evidence=TAS] [GO:0007628 "adult walking behavior"
            evidence=IMP;TAS] [GO:0040011 "locomotion" evidence=TAS]
            [GO:0007420 "brain development" evidence=IMP] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0007419 "ventral cord development"
            evidence=IMP] [GO:0035225 "determination of genital disc
            primordium" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007411 "axon guidance"
            evidence=IMP] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 EMBL:AE014297 GO:GO:0005634 GO:GO:0005737
            GO:GO:0007411 GO:GO:0007420 GO:GO:0007419 GO:GO:0045944
            GO:GO:0005667 GO:GO:0035225 GO:GO:0000978 GO:GO:0004871
            GO:GO:0000982 SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            GO:GO:0007398 GO:GO:0007628 GO:GO:0007418 eggNOG:NOG310284
            KO:K09100 EMBL:AF071934 EMBL:AY129457 EMBL:M19020 PIR:A29945
            PIR:A41647 RefSeq:NP_524340.2 RefSeq:NP_731771.3 UniGene:Dm.4557
            ProteinModelPortal:P05709 SMR:P05709 STRING:P05709 GeneID:41612
            KEGG:dme:Dmel_CG7771 CTD:41612 FlyBase:FBgn0004666
            InParanoid:P05709 OrthoDB:EOG4MPG5H GenomeRNAi:41612 NextBio:824647
            Bgee:P05709 GermOnline:CG7771 Uniprot:P05709
        Length = 697

 Score = 161 (61.7 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 31/94 (32%), Positives = 54/94 (57%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M    +D     + GY P +++  + Y Y H  D+ ++   H+ L+ KG+ T+ YYRFLT
Sbjct:   288 MKLIFFDARVSQLTGYEPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLT 347

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVS 108
             KG  W+W+Q+   + ++  +S+  FIV  + V+S
Sbjct:   348 KGGGWVWVQSYATLVHNSRSSREVFIVSVNYVLS 381


>UNIPROTKB|J9P3T5 [details] [associations]
            symbol:ARNTL2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005667 "transcription factor
            complex" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AAEX03015178
            Ensembl:ENSCAFT00000046810 Uniprot:J9P3T5
        Length = 593

 Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 40/129 (31%), Positives = 72/129 (55%)

Query:     5 KPVTFCMSDLMNST-IY-DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQK 62
             KP  F     MN   +Y D  A  I+GYLP E+LGTS Y+Y+H DD  ++   H+A++Q 
Sbjct:   325 KPTEFITRFAMNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHSNLTDKHKAVLQS 384

Query:    63 GEGT-SCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
              E   +  Y+F  K   ++ L+++++   + W  + E+IV  + +V   + +R + + +P
Sbjct:   385 KEKIFTDSYKFRKKDGSFVTLKSQWFSFTNPWTKELEYIVSVNTLVLGHSEMR-EVSLLP 443

Query:   122 DSEEQSNDT 130
              S + S ++
Sbjct:   444 CSSQSSEES 452


>UNIPROTKB|F1PZY3 [details] [associations]
            symbol:ARNTL2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0007623
            "circadian rhythm" evidence=IEA] [GO:0000982 "RNA polymerase II
            core promoter proximal region sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0007623 GO:GO:0045944 GO:GO:0005667 GO:GO:0004871
            GO:GO:0000982 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            OMA:IPQCNPM EMBL:AAEX03015178 Ensembl:ENSCAFT00000017664
            Uniprot:F1PZY3
        Length = 624

 Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 40/129 (31%), Positives = 72/129 (55%)

Query:     5 KPVTFCMSDLMNST-IY-DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQK 62
             KP  F     MN   +Y D  A  I+GYLP E+LGTS Y+Y+H DD  ++   H+A++Q 
Sbjct:   356 KPTEFITRFAMNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHSNLTDKHKAVLQS 415

Query:    63 GEGT-SCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVP 121
              E   +  Y+F  K   ++ L+++++   + W  + E+IV  + +V   + +R + + +P
Sbjct:   416 KEKIFTDSYKFRKKDGSFVTLKSQWFSFTNPWTKELEYIVSVNTLVLGHSEMR-EVSLLP 474

Query:   122 DSEEQSNDT 130
              S + S ++
Sbjct:   475 CSSQSSEES 483


>RGD|620230 [details] [associations]
            symbol:Arntl2 "aryl hydrocarbon receptor nuclear
            translocator-like 2" species:10116 "Rattus norvegicus" [GO:0000982
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding transcription factor activity" evidence=ISO]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISO] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0007623 "circadian rhythm" evidence=IEP;ISO] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 RGD:620230 GO:GO:0005737 GO:GO:0003677
            GO:GO:0007623 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229 Gene3D:4.10.280.10
            SUPFAM:SSF47459 HSSP:P22415 HOVERGEN:HBG107503 IPI:IPI00781061
            EMBL:AF327071 UniGene:Rn.41612 ProteinModelPortal:Q924H3
            Genevestigator:Q924H3 Uniprot:Q924H3
        Length = 565

 Score = 157 (60.3 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 36/109 (33%), Positives = 61/109 (55%)

Query:     2 VGFKPVTFCMSDLMNST-IY-DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEAL 59
             +  +P  F     MN   +Y D  A  I+GYLP E+LGTS Y+Y+H DD  ++   H+A+
Sbjct:   298 INVRPAEFITRFAMNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHSNLSDKHKAV 357

Query:    60 MQKGEGT-SCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVV 107
             +Q  E   +  Y+F  K   ++ L+++++   + W  K E+IV  + +V
Sbjct:   358 LQSKEKILTDSYKFRVKDGSFVTLKSKWFSFTNPWTKKLEYIVSVNTLV 406


>ZFIN|ZDB-GENE-040426-1315 [details] [associations]
            symbol:hif1al "hypoxia-inducible factor 1, alpha
            subunit, like" species:7955 "Danio rerio" [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IGI]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            ZFIN:ZDB-GENE-040426-1315 GO:GO:0005737 GO:GO:0003677 GO:GO:0051402
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 HOGENOM:HOG000234306
            HOVERGEN:HBG060456 InterPro:IPR021537 Pfam:PF11413 EMBL:AY330295
            IPI:IPI00960923 UniGene:Dr.11978 ProteinModelPortal:Q6EGR9
            InParanoid:Q6EGR9 ArrayExpress:Q6EGR9 Uniprot:Q6EGR9
        Length = 626

 Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 28/84 (33%), Positives = 50/84 (59%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++GY P +++G S ++++H  D D V      L  KG+  +  YRFLTK   ++W +T+ 
Sbjct:   251 LVGYQPDDLIGRSAFEFFHALDFDHVSRSLHILFSKGQVCTGQYRFLTKNGGFVWTETQA 310

Query:    87 YITYHQWNSKPEFIVCTHRVVSYV 110
              + Y+   S+PE +VC + ++S V
Sbjct:   311 TVLYNSRTSQPEAVVCLNFILSGV 334


>MGI|MGI:2684845 [details] [associations]
            symbol:Arntl2 "aryl hydrocarbon receptor nuclear
            translocator-like 2" species:10090 "Mus musculus" [GO:0000982 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity" evidence=ISO] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISO] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0007165 "signal transduction"
            evidence=IEA] [GO:0007623 "circadian rhythm" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0048511 "rhythmic process"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 MGI:MGI:2684845 GO:GO:0005737
            GO:GO:0003677 GO:GO:0007623 GO:GO:0045944 GO:GO:0005667
            GO:GO:0004871 GO:GO:0000982 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 HOGENOM:HOG000234379
            Gene3D:4.10.280.10 SUPFAM:SSF47459 HOVERGEN:HBG107503 CTD:56938
            eggNOG:NOG288887 KO:K09099 OMA:IPQCNPM EMBL:AY005163 EMBL:AY014836
            EMBL:BC108965 EMBL:BC108966 IPI:IPI00129201 IPI:IPI00828642
            RefSeq:NP_758513.1 UniGene:Mm.333500 UniGene:Mm.442075
            ProteinModelPortal:Q2VPD4 SMR:Q2VPD4 STRING:Q2VPD4
            PhosphoSite:Q2VPD4 PRIDE:Q2VPD4 Ensembl:ENSMUST00000080530
            Ensembl:ENSMUST00000111639 Ensembl:ENSMUST00000129788 GeneID:272322
            KEGG:mmu:272322 UCSC:uc009esj.1 InParanoid:Q2VPD4 OrthoDB:EOG4DFPNB
            NextBio:393555 Bgee:Q2VPD4 Genevestigator:Q2VPD4 Uniprot:Q2VPD4
        Length = 579

 Score = 155 (59.6 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 36/109 (33%), Positives = 60/109 (55%)

Query:     2 VGFKPVTFCMSDLMNST-IY-DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEAL 59
             +  +P  F     MN   +Y D  A  I+GYLP E+LGTS Y+Y+H DD  S+   H+A+
Sbjct:   303 INVRPAEFITRFAMNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHSSLTDKHKAV 362

Query:    60 MQKGEGT-SCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVV 107
             +Q  E   +  Y+F  K   ++ L++ ++   + W  + E+IV  + +V
Sbjct:   363 LQSKEKILTDSYKFRVKDGAFVTLKSEWFSFTNPWTKELEYIVSVNTLV 411


>UNIPROTKB|H0Y5R1 [details] [associations]
            symbol:ARNTL2 "Aryl hydrocarbon receptor nuclear
            translocator-like protein 2" species:9606 "Homo sapiens"
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005667 GO:GO:0004871 SMART:SM00086
            TIGRFAMs:TIGR00229 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC068794
            EMBL:AC092829 HGNC:HGNC:18984 Ensembl:ENST00000457040
            Uniprot:H0Y5R1
        Length = 588

 Score = 154 (59.3 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 35/109 (32%), Positives = 62/109 (56%)

Query:     2 VGFKPVTFCMSDLMNST-IY-DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEAL 59
             +  KP  F     +N   +Y D  A  I+GYLP E+LGTS Y+Y+H DD +++   H+A+
Sbjct:   316 INVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAV 375

Query:    60 MQKGEGT-SCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVV 107
             +Q  E   +  Y+F  K   ++ L+++++   + W  + E+IV  + +V
Sbjct:   376 LQSKEKILTDSYKFRAKDGSFVTLKSQWFSFTNPWTKELEYIVSVNTLV 424


>UNIPROTKB|Q8WYA1 [details] [associations]
            symbol:ARNTL2 "Aryl hydrocarbon receptor nuclear
            translocator-like protein 2" species:9606 "Homo sapiens"
            [GO:0004871 "signal transducer activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IDA;NAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] [GO:0009649 "entrainment of circadian clock"
            evidence=NAS] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0007623 "circadian
            rhythm" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0000982 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity"
            evidence=IDA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005634 GO:GO:0005737
            GO:GO:0003677 GO:GO:0009649 GO:GO:0007623 GO:GO:0045944
            GO:GO:0005667 GO:GO:0004871 GO:GO:0000982 SMART:SM00086
            TIGRFAMs:TIGR00229 Gene3D:4.10.280.10 SUPFAM:SSF47459
            HOVERGEN:HBG107503 CTD:56938 eggNOG:NOG288887 KO:K09099
            EMBL:AB039921 EMBL:AF256215 EMBL:AF231338 EMBL:AF231339
            EMBL:AF246960 EMBL:AF246961 EMBL:AF246962 EMBL:AF246963
            EMBL:AK296706 EMBL:AC068794 EMBL:AC092829 EMBL:BC000172
            EMBL:BC125061 EMBL:BC125062 IPI:IPI00142781 IPI:IPI00163662
            IPI:IPI00465306 IPI:IPI00788724 IPI:IPI00789255 IPI:IPI00795339
            IPI:IPI00827866 IPI:IPI00827897 IPI:IPI01009213
            RefSeq:NP_001234931.1 RefSeq:NP_001234932.1 RefSeq:NP_001234933.1
            RefSeq:NP_001234934.1 RefSeq:NP_064568.3 UniGene:Hs.434269
            UniGene:Hs.445447 PDB:2KDK PDBsum:2KDK ProteinModelPortal:Q8WYA1
            SMR:Q8WYA1 IntAct:Q8WYA1 STRING:Q8WYA1 PhosphoSite:Q8WYA1
            DMDM:124007121 PaxDb:Q8WYA1 PRIDE:Q8WYA1 Ensembl:ENST00000261178
            Ensembl:ENST00000266503 Ensembl:ENST00000311001
            Ensembl:ENST00000395901 Ensembl:ENST00000542388
            Ensembl:ENST00000544915 Ensembl:ENST00000546179 GeneID:56938
            KEGG:hsa:56938 UCSC:uc001rht.2 UCSC:uc001rhu.2 UCSC:uc001rhv.2
            UCSC:uc001rhw.3 UCSC:uc009zji.2 GeneCards:GC12P027485
            H-InvDB:HIX0037110 HGNC:HGNC:18984 MIM:614517 neXtProt:NX_Q8WYA1
            PharmGKB:PA134896555 InParanoid:Q8WYA1 OMA:IPQCNPM PhylomeDB:Q8WYA1
            GenomeRNAi:56938 NextBio:62501 ArrayExpress:Q8WYA1 Bgee:Q8WYA1
            CleanEx:HS_ARNTL2 Genevestigator:Q8WYA1 Uniprot:Q8WYA1
        Length = 636

 Score = 154 (59.3 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 35/109 (32%), Positives = 62/109 (56%)

Query:     2 VGFKPVTFCMSDLMNST-IY-DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEAL 59
             +  KP  F     +N   +Y D  A  I+GYLP E+LGTS Y+Y+H DD +++   H+A+
Sbjct:   364 INVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAV 423

Query:    60 MQKGEGT-SCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVV 107
             +Q  E   +  Y+F  K   ++ L+++++   + W  + E+IV  + +V
Sbjct:   424 LQSKEKILTDSYKFRAKDGSFVTLKSQWFSFTNPWTKELEYIVSVNTLV 472


>UNIPROTKB|F1NQK6 [details] [associations]
            symbol:HIF1A "Hypoxia-inducible factor 1-alpha"
            species:9031 "Gallus gallus" [GO:0000988 "protein binding
            transcription factor activity" evidence=IEA] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0001525
            "angiogenesis" evidence=IEA] [GO:0001755 "neural crest cell
            migration" evidence=IEA] [GO:0001837 "epithelial to mesenchymal
            transition" evidence=IEA] [GO:0001892 "embryonic placenta
            development" evidence=IEA] [GO:0001922 "B-1 B cell homeostasis"
            evidence=IEA] [GO:0001947 "heart looping" evidence=IEA] [GO:0002052
            "positive regulation of neuroblast proliferation" evidence=IEA]
            [GO:0002248 "connective tissue replacement involved in inflammatory
            response wound healing" evidence=IEA] [GO:0003151 "outflow tract
            morphogenesis" evidence=IEA] [GO:0003208 "cardiac ventricle
            morphogenesis" evidence=IEA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006089 "lactate metabolic process"
            evidence=IEA] [GO:0006110 "regulation of glycolysis" evidence=IEA]
            [GO:0006879 "cellular iron ion homeostasis" evidence=IEA]
            [GO:0007165 "signal transduction" evidence=IEA] [GO:0007595
            "lactation" evidence=IEA] [GO:0008134 "transcription factor
            binding" evidence=IEA] [GO:0008542 "visual learning" evidence=IEA]
            [GO:0010573 "vascular endothelial growth factor production"
            evidence=IEA] [GO:0010575 "positive regulation vascular endothelial
            growth factor production" evidence=IEA] [GO:0010634 "positive
            regulation of epithelial cell migration" evidence=IEA] [GO:0010870
            "positive regulation of receptor biosynthetic process"
            evidence=IEA] [GO:0014850 "response to muscle activity"
            evidence=IEA] [GO:0019896 "axon transport of mitochondrion"
            evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
            [GO:0021502 "neural fold elevation formation" evidence=IEA]
            [GO:0021987 "cerebral cortex development" evidence=IEA] [GO:0030502
            "negative regulation of bone mineralization" evidence=IEA]
            [GO:0030949 "positive regulation of vascular endothelial growth
            factor receptor signaling pathway" evidence=IEA] [GO:0031625
            "ubiquitin protein ligase binding" evidence=IEA] [GO:0032007
            "negative regulation of TOR signaling cascade" evidence=IEA]
            [GO:0032364 "oxygen homeostasis" evidence=IEA] [GO:0032909
            "regulation of transforming growth factor beta2 production"
            evidence=IEA] [GO:0032963 "collagen metabolic process"
            evidence=IEA] [GO:0035035 "histone acetyltransferase binding"
            evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IEA]
            [GO:0035774 "positive regulation of insulin secretion involved in
            cellular response to glucose stimulus" evidence=IEA] [GO:0042541
            "hemoglobin biosynthetic process" evidence=IEA] [GO:0042593
            "glucose homeostasis" evidence=IEA] [GO:0042826 "histone
            deacetylase binding" evidence=IEA] [GO:0043524 "negative regulation
            of neuron apoptotic process" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0043619
            "regulation of transcription from RNA polymerase II promoter in
            response to oxidative stress" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0045648 "positive regulation of erythrocyte differentiation"
            evidence=IEA] [GO:0045926 "negative regulation of growth"
            evidence=IEA] [GO:0046716 "muscle cell homeostasis" evidence=IEA]
            [GO:0046886 "positive regulation of hormone biosynthetic process"
            evidence=IEA] [GO:0048546 "digestive tract morphogenesis"
            evidence=IEA] [GO:0050790 "regulation of catalytic activity"
            evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
            [GO:0051541 "elastin metabolic process" evidence=IEA] [GO:0051879
            "Hsp90 protein binding" evidence=IEA] [GO:0060574 "intestinal
            epithelial cell maturation" evidence=IEA] [GO:0061030 "epithelial
            cell differentiation involved in mammary gland alveolus
            development" evidence=IEA] [GO:0061298 "retina vasculature
            development in camera-type eye" evidence=IEA] [GO:0061419 "positive
            regulation of transcription from RNA polymerase II promoter in
            response to hypoxia" evidence=IEA] [GO:0071347 "cellular response
            to interleukin-1" evidence=IEA] [GO:0071542 "dopaminergic neuron
            differentiation" evidence=IEA] [GO:2001054 "negative regulation of
            mesenchymal cell apoptotic process" evidence=IEA]
            InterPro:IPR001321 InterPro:IPR013655 Pfam:PF08447 PRINTS:PR01080
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0007165 GO:GO:0030154
            GO:GO:0005730 GO:GO:0035774 GO:GO:0006110 GO:GO:0043565
            GO:GO:0071456 GO:GO:0043524 GO:GO:0010575 GO:GO:0050790
            GO:GO:0042593 GO:GO:0032007 GO:GO:0006879 GO:GO:0005667
            GO:GO:0003705 GO:GO:0042127 GO:GO:0001077 GO:GO:0044212
            GO:GO:0046716 GO:GO:0009434 GO:GO:0045926 GO:GO:0019896
            GO:GO:0045648 SMART:SM00086 GO:GO:0014850 GO:GO:0030949
            GO:GO:0071347 GO:GO:0010634 GO:GO:0046886 GO:GO:0043619
            GO:GO:0030502 GO:GO:0042541 GO:GO:0000988 GO:GO:0006089
            GO:GO:0010870 GO:GO:0032364 InterPro:IPR014887 InterPro:IPR021537
            Pfam:PF11413 Pfam:PF08778 GeneTree:ENSGT00650000093281
            GO:GO:0001922 GO:GO:0051541 GO:GO:2001054 GO:GO:0032909
            EMBL:AADN02003885 EMBL:AADN02003886 IPI:IPI00823267
            Ensembl:ENSGALT00000037379 ArrayExpress:F1NQK6 Uniprot:F1NQK6
        Length = 525

 Score = 150 (57.9 bits), Expect = 9.0e-10, P = 9.0e-10
 Identities = 29/81 (35%), Positives = 49/81 (60%)

Query:    36 LGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYHQWNS 95
             LG S Y+YYH  D D +   H  +  KG+ T+  YR L K   ++W++T+  + Y+  NS
Sbjct:     1 LGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKQGGYVWVETQATVIYNTKNS 60

Query:    96 KPEFIVCTHRVVSYVNVLRRD 116
             +P+ IVC + V+S   ++++D
Sbjct:    61 QPQCIVCVNYVLS--GIVQKD 79


>FB|FBgn0023094 [details] [associations]
            symbol:cyc "cycle" species:7227 "Drosophila melanogaster"
            [GO:0000977 "RNA polymerase II regulatory region sequence-specific
            DNA binding" evidence=IPI] [GO:0046982 "protein heterodimerization
            activity" evidence=NAS;IPI] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA;NAS]
            [GO:0005634 "nucleus" evidence=NAS] [GO:0007623 "circadian rhythm"
            evidence=NAS;TAS] [GO:0008062 "eclosion rhythm" evidence=NAS;TAS]
            [GO:0045475 "locomotor rhythm" evidence=NAS;TAS] [GO:0048148
            "behavioral response to cocaine" evidence=NAS;TAS] [GO:0045187
            "regulation of circadian sleep/wake cycle, sleep" evidence=IMP;TAS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=NAS;TAS] [GO:0007622 "rhythmic behavior" evidence=TAS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=NAS;TAS] [GO:0006355 "regulation
            of transcription, DNA-dependent" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005667 "transcription
            factor complex" evidence=IEA] [GO:0007165 "signal transduction"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=NAS] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0032922 "circadian regulation of gene expression" evidence=IMP]
            [GO:0042594 "response to starvation" evidence=IDA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0005737 EMBL:AE014296 GO:GO:0003677
            GO:GO:0045187 GO:GO:0045944 GO:GO:0042594 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005667 GO:GO:0000122 GO:GO:0004871
            GO:GO:0046982 GO:GO:0048148 GO:GO:0045475 GO:GO:0032922
            SMART:SM00086 eggNOG:NOG293303 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 KO:K02296 GO:GO:0008062
            EMBL:AF065473 EMBL:AF067206 EMBL:AF069998 EMBL:AY119284
            EMBL:BT025197 RefSeq:NP_524168.2 UniGene:Dm.1004
            ProteinModelPortal:O61734 SMR:O61734 IntAct:O61734
            MINT:MINT-1328881 STRING:O61734 PRIDE:O61734
            EnsemblMetazoa:FBtr0074924 GeneID:40162 KEGG:dme:Dmel_CG8727
            CTD:40162 FlyBase:FBgn0023094 InParanoid:O61734 OMA:EQCPRER
            OrthoDB:EOG46WWQT PhylomeDB:O61734 GenomeRNAi:40162 NextBio:817333
            Bgee:O61734 GermOnline:CG8727 Uniprot:O61734
        Length = 413

 Score = 148 (57.2 bits), Expect = 9.7e-10, P = 9.7e-10
 Identities = 31/87 (35%), Positives = 53/87 (60%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEG-TSCYYRFLTKGQQW 79
             D  A  +IG+LP E+LGTS Y+Y+H +D+ +++  H+ +MQ  E  T+  YRF  K   +
Sbjct:   325 DQRATLVIGFLPQEILGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSY 384

Query:    80 IWLQTRFYITYHQWNSKPEFIVCTHRV 106
             I LQ+ +    + W S+ ++I+  + V
Sbjct:   385 IQLQSEWRAFKNPWTSEIDYIIAKNSV 411


>FB|FBgn0003068 [details] [associations]
            symbol:per "period" species:7227 "Drosophila melanogaster"
            [GO:0005634 "nucleus" evidence=IDA;NAS;TAS] [GO:0007623 "circadian
            rhythm" evidence=IMP;NAS;TAS] [GO:2000678 "negative regulation of
            transcription regulatory region DNA binding" evidence=IDA]
            [GO:0046982 "protein heterodimerization activity"
            evidence=NAS;TAS;IPI] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter"
            evidence=NAS;IDA;TAS] [GO:0008134 "transcription factor binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA;NAS;TAS]
            [GO:0007624 "ultradian rhythm" evidence=NAS] [GO:0048512 "circadian
            behavior" evidence=IMP] [GO:0045433 "male courtship behavior,
            veined wing generated song production" evidence=NAS;TAS]
            [GO:0045475 "locomotor rhythm" evidence=NAS;IMP;TAS] [GO:0008062
            "eclosion rhythm" evidence=NAS;IMP;TAS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0007617 "mating behavior" evidence=IMP]
            [GO:0007619 "courtship behavior" evidence=NAS] [GO:0003712
            "transcription cofactor activity" evidence=NAS] [GO:0048148
            "behavioral response to cocaine" evidence=NAS] [GO:0045187
            "regulation of circadian sleep/wake cycle, sleep" evidence=IMP]
            [GO:0042745 "circadian sleep/wake cycle" evidence=TAS] [GO:0007622
            "rhythmic behavior" evidence=TAS] [GO:0003714 "transcription
            corepressor activity" evidence=TAS] [GO:0009416 "response to light
            stimulus" evidence=TAS] [GO:0009266 "response to temperature
            stimulus" evidence=TAS] [GO:0007165 "signal transduction"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0007620 "copulation" evidence=IMP] [GO:0007616
            "long-term memory" evidence=IMP] [GO:0009649 "entrainment of
            circadian clock" evidence=IMP] [GO:0043153 "entrainment of
            circadian clock by photoperiod" evidence=IMP] [GO:0006979 "response
            to oxidative stress" evidence=IMP] [GO:0008340 "determination of
            adult lifespan" evidence=IMP] [GO:0001306 "age-dependent response
            to oxidative stress" evidence=IMP] [GO:0060086 "circadian
            temperature homeostasis" evidence=IMP] InterPro:IPR000014
            InterPro:IPR013767 Pfam:PF00989 PROSITE:PS50112 SMART:SM00091
            InterPro:IPR001610 GO:GO:0005634 GO:GO:0008340 GO:GO:0005737
            GO:GO:0048471 GO:GO:0003714 GO:GO:0045187 EMBL:AE014298
            GO:GO:0007616 GO:GO:0000122 GO:GO:0004871 GO:GO:0046982
            GO:GO:0048148 GO:GO:0045475 SMART:SM00086 GO:GO:0009266
            GO:GO:0045433 GO:GO:0043153 EMBL:AL024485 EMBL:AY047980
            EMBL:AY047981 EMBL:AY047982 EMBL:AY047983 EMBL:AY047984
            EMBL:AY047985 EMBL:AY047986 EMBL:AY047987 EMBL:AY047988
            EMBL:AY047989 EMBL:AY047990 EMBL:AY047991 EMBL:AY047992
            EMBL:AY047993 EMBL:AY047994 EMBL:AY047995 EMBL:AY047996
            EMBL:AY047997 EMBL:AY047998 EMBL:AY047999 EMBL:AY048000
            EMBL:AY048001 EMBL:AY048002 EMBL:AY048003 EMBL:AY048004
            EMBL:AY048005 EMBL:AY048006 EMBL:AY048007 EMBL:AY048008
            EMBL:AY048009 EMBL:AY048010 EMBL:AY048011 EMBL:AY048012
            EMBL:AY048013 EMBL:AY048014 EMBL:AY048015 EMBL:AY048016
            EMBL:AY048017 EMBL:AY048018 EMBL:AY048019 EMBL:AY048020
            EMBL:AY048021 EMBL:AY048022 EMBL:AY048023 EMBL:AY048024
            EMBL:AY048025 EMBL:AY048026 EMBL:AY048027 EMBL:AY048028
            EMBL:AY048029 EMBL:AY048030 EMBL:AY048031 EMBL:AY048032
            EMBL:AY048033 EMBL:AY048034 EMBL:AY048035 EMBL:AY048036
            EMBL:AY048037 EMBL:AY048038 EMBL:AY048040 EMBL:AY048041
            EMBL:AY048042 GO:GO:0001306 GO:GO:0008062 GO:GO:0007620
            GO:GO:2000678 eggNOG:NOG253593 KO:K02633 EMBL:M30114 EMBL:AF033029
            EMBL:X03636 EMBL:AY575847 EMBL:L07817 EMBL:L07818 EMBL:L07819
            EMBL:L07821 EMBL:L07823 EMBL:L07825 EMBL:AB029194 EMBL:AB029195
            EMBL:AB029196 EMBL:AB029222 EMBL:AB029223 EMBL:AB029224
            EMBL:AB029250 EMBL:AB029251 EMBL:AB029252 EMBL:D00009 EMBL:AF251241
            PIR:A23932 PIR:A26427 PIR:A26588 PIR:B26427 PIR:C26427 PIR:S52943
            RefSeq:NP_525056.2 UniGene:Dm.65 PDB:1WA9 PDB:3GEC PDB:3RTY
            PDBsum:1WA9 PDBsum:3GEC PDBsum:3RTY ProteinModelPortal:P07663
            SMR:P07663 DIP:DIP-29426N MINT:MINT-1327740 STRING:P07663
            GeneID:31251 KEGG:dme:Dmel_CG2647 CTD:31251 FlyBase:FBgn0003068
            InParanoid:P07663 OrthoDB:EOG4V41PZ EvolutionaryTrace:P07663
            GenomeRNAi:31251 NextBio:772671 Bgee:P07663 GermOnline:CG2647
            Uniprot:P07663
        Length = 1224

 Score = 145 (56.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 34/91 (37%), Positives = 53/91 (58%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGE--GTS-CY--YRFLTK 75
             D  A   +GYLP +++G S  D+YH +DL  +   +E +M+KG+  G S C   YRFL +
Sbjct:   405 DSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQ 464

Query:    76 GQQWIWLQTRFYITYHQWNSKPEFIVCTHRV 106
                ++ L+T +    + W+ K EF+V  HRV
Sbjct:   465 NGCYVLLETEWTSFVNPWSRKLEFVVGHHRV 495

 Score = 35 (17.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query:   119 QVPDSEEQSNDTGPGDSNTI 138
             Q P S+  S  T PG S  +
Sbjct:  1099 QRPSSQSASVKTEPGSSAAV 1118


>UNIPROTKB|F1RM22 [details] [associations]
            symbol:HIF3A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0001666
            "response to hypoxia" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0005667 "transcription
            factor complex" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005886
            GO:GO:0005737 GO:GO:0003677 GO:GO:0001666 GO:GO:0003700
            GO:GO:0005667 GO:GO:0006366 GO:GO:0004871 SMART:SM00086
            InterPro:IPR021537 Pfam:PF11413 GeneTree:ENSGT00650000093281
            OMA:APILDGT EMBL:FP565329 Ensembl:ENSSSCT00000003440 Uniprot:F1RM22
        Length = 670

 Score = 149 (57.5 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 32/96 (33%), Positives = 49/96 (51%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     + GY P +++G S Y+Y H  D D+V     AL+ KG+  +  YRFL 
Sbjct:   250 MKFTYCDERIAEVAGYRPDDLIGCSAYEYIHALDSDAVGQSIHALLSKGQAVTGQYRFLA 309

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             +   ++W QT+  +       + E IVC H ++S V
Sbjct:   310 RSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISQV 345


>ZFIN|ZDB-GENE-080917-55 [details] [associations]
            symbol:hif1aa "hypoxia-inducible factor 1, alpha
            subunit (basic helix-loop-helix transcription factor) a"
            species:7955 "Danio rerio" [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0007165 "signal transduction"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            ZFIN:ZDB-GENE-080917-55 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086 SUPFAM:SSF47459
            InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413 Pfam:PF08778
            GeneTree:ENSGT00650000093281 EMBL:BX649520 IPI:IPI00506879
            Ensembl:ENSDART00000044282 Bgee:F1QNB9 Uniprot:F1QNB9
        Length = 760

 Score = 149 (57.5 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 30/94 (31%), Positives = 51/94 (54%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     ++G+ P +VL  S Y+YYH  D D +   H +L  KG+  +  YR L 
Sbjct:   249 MRFTYCDERITELLGFDPEDVLQHSVYEYYHALDSDHMTKTHHSLFVKGQVCTGQYRLLA 308

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVS 108
             K   ++W +T+  + Y+  NS+ + +VC + ++S
Sbjct:   309 KAGGFVWAETQATVIYNSKNSQAQCVVCVNYILS 342


>UNIPROTKB|H0YDZ5 [details] [associations]
            symbol:HIF3A "Hypoxia-inducible factor 3-alpha"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447
            PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610 GO:GO:0005886
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 EMBL:AC007193 HGNC:HGNC:15825
            Ensembl:ENST00000472815 Uniprot:H0YDZ5
        Length = 492

 Score = 145 (56.1 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
             D +A  + GY P +++G S Y+Y H  D D+V      L+ KG+  +  YRFL +   ++
Sbjct:   229 DRIAE-VAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSKGQAVTGQYRFLARSGGYL 287

Query:    81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             W QT+  +       + E IVC H ++S V
Sbjct:   288 WTQTQATVVSGGRGPQSESIVCVHFLISQV 317


>UNIPROTKB|F1N4Q7 [details] [associations]
            symbol:ARNTL2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0007623 "circadian
            rhythm" evidence=IEA] [GO:0000982 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667 "transcription
            factor complex" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677 GO:GO:0007623
            GO:GO:0045944 GO:GO:0005667 GO:GO:0004871 GO:GO:0000982
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 OMA:IPQCNPM EMBL:DAAA02014003
            IPI:IPI00837789 Ensembl:ENSBTAT00000043261 Uniprot:F1N4Q7
        Length = 629

 Score = 146 (56.5 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 38/122 (31%), Positives = 64/122 (52%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-SCYYRFLTKGQQWIWL 82
             A  I+GYLP E+LGTS Y+Y+H DD  ++   H+A++Q  E   +  Y+F  K   ++ L
Sbjct:   382 ATAILGYLPQELLGTSCYEYFHQDDHSNLTDKHKAVLQSKEKIFTDSYKFRAKDGSFVTL 441

Query:    83 QTRFYITYHQWNSKPEFIVCTHRVV------SYVNVLRRDNNQVPDSEEQSNDTGPGDSN 136
             +++++   + W  + E+IV  + VV         ++L   +     S  QS  + PG S 
Sbjct:   442 KSQWFSFTNPWTKELEYIVSVNTVVLGHSDAGETSLLPCSSQSSEGSSRQSFISVPGTST 501

Query:   137 TI 138
              I
Sbjct:   502 EI 503


>FB|FBgn0264075 [details] [associations]
            symbol:tgo "tango" species:7227 "Drosophila melanogaster"
            [GO:0007422 "peripheral nervous system development" evidence=TAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0001077 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IPI]
            [GO:0046982 "protein heterodimerization activity" evidence=TAS;IPI]
            [GO:0005634 "nucleus" evidence=IC;ISS;IDA] [GO:0000981
            "sequence-specific DNA binding RNA polymerase II transcription
            factor activity" evidence=ISS] [GO:0007417 "central nervous system
            development" evidence=IMP] [GO:0007424 "open tracheal system
            development" evidence=TAS] [GO:0007425 "epithelial cell fate
            determination, open tracheal system" evidence=NAS;TAS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA;TAS;IPI] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005667 "transcription factor complex" evidence=IEA]
            [GO:0007165 "signal transduction" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0007420 "brain development"
            evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
            [GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
            "dendrite morphogenesis" evidence=IMP] [GO:0071456 "cellular
            response to hypoxia" evidence=IDA] [GO:0032869 "cellular response
            to insulin stimulus" evidence=IDA] [GO:0043565 "sequence-specific
            DNA binding" evidence=IDA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0043234 "protein
            complex" evidence=IPI] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] [GO:0008347 "glial cell migration"
            evidence=IMP] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 EMBL:AE014297 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043234 GO:GO:0007420 GO:GO:0032869
            GO:GO:0043565 GO:GO:0045944 GO:GO:0007422 GO:GO:0071456
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0000122
            GO:GO:0048813 GO:GO:0004871 GO:GO:0007517 GO:GO:0046982
            SMART:SM00086 TIGRFAMs:TIGR00229 eggNOG:NOG293303
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            KO:K09097 EMBL:AB002556 EMBL:AF016053 EMBL:AF020426 EMBL:AF154417
            EMBL:AY069581 EMBL:M14550 RefSeq:NP_731308.1 UniGene:Dm.3376
            ProteinModelPortal:O15945 SMR:O15945 IntAct:O15945 MINT:MINT-875932
            STRING:O15945 PaxDb:O15945 EnsemblMetazoa:FBtr0082005 GeneID:41084
            KEGG:dme:Dmel_CG11987 CTD:41084 FlyBase:FBgn0015014
            InParanoid:O15945 OMA:QPVTEGY OrthoDB:EOG4GTHV2 PhylomeDB:O15945
            GenomeRNAi:41084 NextBio:822075 Bgee:O15945 GermOnline:CG11987
            GO:GO:0007425 GO:GO:0008347 Uniprot:O15945
        Length = 642

 Score = 146 (56.5 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 28/79 (35%), Positives = 47/79 (59%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVV-TCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             I+GY P E+LG   YD++H +D   +  +  + L QKG+  S  YR   K  +++WL+T+
Sbjct:   305 ILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQ 364

Query:    86 FYITYHQWNSKPEFIVCTH 104
              Y   + +  + E+IVCT+
Sbjct:   365 AYAFLNPYTDEVEYIVCTN 383


>UNIPROTKB|F5H884 [details] [associations]
            symbol:HIF3A "Hypoxia-inducible factor 3-alpha"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447
            PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610 GO:GO:0005886
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 InterPro:IPR021537 Pfam:PF11413
            EMBL:AC007193 HGNC:HGNC:15825 IPI:IPI00908806
            ProteinModelPortal:F5H884 SMR:F5H884 Ensembl:ENST00000420102
            UCSC:uc010xxz.2 ArrayExpress:F5H884 Bgee:F5H884 Uniprot:F5H884
        Length = 612

 Score = 145 (56.1 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
             D +A  + GY P +++G S Y+Y H  D D+V      L+ KG+  +  YRFL +   ++
Sbjct:   205 DRIAE-VAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSKGQAVTGQYRFLARSGGYL 263

Query:    81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             W QT+  +       + E IVC H ++S V
Sbjct:   264 WTQTQATVVSGGRGPQSESIVCVHFLISQV 293


>UNIPROTKB|E9PB04 [details] [associations]
            symbol:HIF3A "Hypoxia-inducible factor 3-alpha"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0001666 "response to hypoxia"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] InterPro:IPR000014 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            SMART:SM00091 InterPro:IPR001610 GO:GO:0005886 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0001666 GO:GO:0045944
            GO:GO:0003700 GO:GO:0006366 GO:GO:0004871 SMART:SM00086
            TIGRFAMs:TIGR00229 InterPro:IPR021537 Pfam:PF11413 EMBL:AC007193
            HGNC:HGNC:15825 IPI:IPI01008729 ProteinModelPortal:E9PB04
            SMR:E9PB04 Ensembl:ENST00000339613 ArrayExpress:E9PB04 Bgee:E9PB04
            Uniprot:E9PB04
        Length = 613

 Score = 145 (56.1 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
             D +A  + GY P +++G S Y+Y H  D D+V      L+ KG+  +  YRFL +   ++
Sbjct:   200 DRIAE-VAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSKGQAVTGQYRFLARSGGYL 258

Query:    81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             W QT+  +       + E IVC H ++S V
Sbjct:   259 WTQTQATVVSGGRGPQSESIVCVHFLISQV 288


>UNIPROTKB|Q9Y2N7 [details] [associations]
            symbol:HIF3A "Hypoxia-inducible factor 3-alpha"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0033554 "cellular response
            to stress" evidence=TAS] [GO:0061418 "regulation of transcription
            from RNA polymerase II promoter in response to hypoxia"
            evidence=TAS] [GO:0071456 "cellular response to hypoxia"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 Reactome:REACT_120956 GO:GO:0005829
            GO:GO:0005886 GO:GO:0005654 GO:GO:0003677 GO:GO:0045944
            EMBL:CH471126 GO:GO:0003700 GO:GO:0006366 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            Pathway_Interaction_DB:hif1apathway GO:GO:0061418 HSSP:Q99814
            HOGENOM:HOG000234306 HOVERGEN:HBG060456 InterPro:IPR021537
            Pfam:PF11413 EMBL:AB054067 EMBL:AF463492 EMBL:AB118749
            EMBL:AB295039 EMBL:AK021653 EMBL:AK024095 EMBL:AK027725
            EMBL:AK297828 EMBL:AC007193 EMBL:BC080551 IPI:IPI00164458
            IPI:IPI00292048 IPI:IPI00470784 IPI:IPI00738729 IPI:IPI00746815
            IPI:IPI00844043 IPI:IPI00844320 PIR:JC7771 RefSeq:NP_071907.4
            RefSeq:NP_690007.1 RefSeq:NP_690008.2 UniGene:Hs.420830
            ProteinModelPortal:Q9Y2N7 SMR:Q9Y2N7 STRING:Q9Y2N7
            PhosphoSite:Q9Y2N7 DMDM:145558932 PRIDE:Q9Y2N7
            Ensembl:ENST00000244302 Ensembl:ENST00000244303
            Ensembl:ENST00000300862 Ensembl:ENST00000377670 GeneID:64344
            KEGG:hsa:64344 UCSC:uc002peh.3 UCSC:uc002pel.3 CTD:64344
            GeneCards:GC19P046800 HGNC:HGNC:15825 HPA:HPA041141 MIM:609976
            neXtProt:NX_Q9Y2N7 PharmGKB:PA29285 eggNOG:NOG288942
            InParanoid:Q9Y2N7 KO:K09096 GenomeRNAi:64344 NextBio:66283
            ArrayExpress:Q9Y2N7 Bgee:Q9Y2N7 CleanEx:HS_HIF3A
            Genevestigator:Q9Y2N7 Uniprot:Q9Y2N7
        Length = 669

 Score = 145 (56.1 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
             D +A  + GY P +++G S Y+Y H  D D+V      L+ KG+  +  YRFL +   ++
Sbjct:   256 DRIAE-VAGYSPDDLIGCSAYEYIHALDSDAVSKSIHTLLSKGQAVTGQYRFLARSGGYL 314

Query:    81 WLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             W QT+  +       + E IVC H ++S V
Sbjct:   315 WTQTQATVVSGGRGPQSESIVCVHFLISQV 344


>UNIPROTKB|F1SG81 [details] [associations]
            symbol:ARNTL2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0007623 "circadian
            rhythm" evidence=IEA] [GO:0000982 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667 "transcription
            factor complex" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677 GO:GO:0007623
            GO:GO:0045944 GO:GO:0005667 GO:GO:0004871 GO:GO:0000982
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 OMA:IPQCNPM EMBL:CU633729
            Ensembl:ENSSSCT00000000594 Uniprot:F1SG81
        Length = 489

 Score = 143 (55.4 bits), Expect = 4.6e-09, P = 4.6e-09
 Identities = 29/85 (34%), Positives = 52/85 (61%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-SCYYRFLTKGQQWIWL 82
             A  I+GYLP E+LGTS Y+Y+H DD  ++   H+A++Q  E   +  Y+F  K   ++ L
Sbjct:   285 ATAILGYLPQELLGTSCYEYFHQDDHSNLTNKHKAVLQSKEKIFTDSYKFRAKDGSFVTL 344

Query:    83 QTRFYITYHQWNSKPEFIVCTHRVV 107
             +++++   + W  + E+IV  + +V
Sbjct:   345 KSQWFSFTNPWTKELEYIVSVNTLV 369


>UNIPROTKB|A7Z028 [details] [associations]
            symbol:HIF3A "HIF3A protein" species:9913 "Bos taurus"
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0001666 "response to hypoxia"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005886 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
            GO:GO:0001666 GO:GO:0003700 GO:GO:0006366 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            HOGENOM:HOG000234306 HOVERGEN:HBG060456 InterPro:IPR021537
            Pfam:PF11413 GeneTree:ENSGT00650000093281 CTD:64344
            eggNOG:NOG288942 KO:K09096 OrthoDB:EOG4BVRT7 EMBL:DAAA02047392
            EMBL:BC153226 IPI:IPI00695039 RefSeq:NP_001098812.1
            UniGene:Bt.43927 Ensembl:ENSBTAT00000025217 GeneID:507699
            KEGG:bta:507699 InParanoid:A7Z028 OMA:APILDGT NextBio:20868183
            Uniprot:A7Z028
        Length = 669

 Score = 144 (55.7 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 31/96 (32%), Positives = 48/96 (50%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     + GY P +++G S Y+Y H  D D+V      L+ KG+  +  YRFL 
Sbjct:   249 MKFTYCDERIAEVAGYSPDDLIGCSAYEYIHALDSDAVGQSIHTLLSKGQAVTGQYRFLA 308

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             +   ++W QT+  +       + E IVC H ++S V
Sbjct:   309 RSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRV 344


>ZFIN|ZDB-GENE-020531-2 [details] [associations]
            symbol:ahr1a "aryl hydrocarbon receptor 1a"
            species:7955 "Danio rerio" [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0007165
            "signal transduction" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0042221 "response
            to chemical stimulus" evidence=IGI] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            ZFIN:ZDB-GENE-020531-2 GO:GO:0005737 GO:GO:0003677 GO:GO:0042221
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 Gene3D:4.10.280.10 GeneTree:ENSGT00700000104038
            EMBL:BX511151 IPI:IPI00866185 Ensembl:ENSDART00000049830
            ArrayExpress:F1R5Y6 Bgee:F1R5Y6 Uniprot:F1R5Y6
        Length = 808

 Score = 132 (51.5 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
 Identities = 25/83 (30%), Positives = 46/83 (55%)

Query:    27 IIGYLPFEVLGT-SGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             ++GY   E+  + SGY + H  D+      H  +M+ G+     +R LTK  +W+W+Q+ 
Sbjct:   312 VLGYTEAELCNSGSGYQFIHAADMMYCAEGHMRMMRTGKTGLTVFRLLTKQNRWVWVQSN 371

Query:    86 FYITYHQWNSKPEFIVCTHRVVS 108
               + Y   N +P+ I+ +HRV++
Sbjct:   372 GKLVYK--NGQPDCIITSHRVIT 392

 Score = 36 (17.7 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   155 FHQSDVIHQSVYELI 169


>UNIPROTKB|F1SEI6 [details] [associations]
            symbol:F1SEI6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005634 GO:GO:0006355
            GO:GO:0003677 GO:GO:0006351 GO:GO:0004871 SMART:SM00086
            Gene3D:4.10.280.10 SUPFAM:SSF47459 GeneTree:ENSGT00700000104038
            EMBL:FP312884 Ensembl:ENSSSCT00000016739 Uniprot:F1SEI6
        Length = 385

 Score = 123 (48.4 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
 Identities = 25/81 (30%), Positives = 42/81 (51%)

Query:    27 IIGYLPFEVL--GTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84
             ++GY   E+   GT GY + H  D+      H  +++ GE     +R LTK  +W W+Q+
Sbjct:   305 VLGYTEAELCMRGT-GYQFIHAADMLYCAEYHVRMIKTGESGMIVFRLLTKDNRWTWVQS 363

Query:    85 RFYITYHQWNSKPEFIVCTHR 105
                + Y   N +P++I+ T R
Sbjct:   364 NARLVYK--NGRPDYIIATQR 382

 Score = 36 (17.7 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   147 FQQSDVIHQSVYELI 161


>UNIPROTKB|I3L5U3 [details] [associations]
            symbol:I3L5U3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005634 GO:GO:0006355
            GO:GO:0003677 GO:GO:0006351 GO:GO:0004871 SMART:SM00086
            Gene3D:4.10.280.10 SUPFAM:SSF47459 GeneTree:ENSGT00700000104038
            EMBL:FP312884 Ensembl:ENSSSCT00000027011 OMA:SEGLIFY Uniprot:I3L5U3
        Length = 394

 Score = 123 (48.4 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
 Identities = 25/81 (30%), Positives = 42/81 (51%)

Query:    27 IIGYLPFEVL--GTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84
             ++GY   E+   GT GY + H  D+      H  +++ GE     +R LTK  +W W+Q+
Sbjct:   314 VLGYTEAELCMRGT-GYQFIHAADMLYCAEYHVRMIKTGESGMIVFRLLTKDNRWTWVQS 372

Query:    85 RFYITYHQWNSKPEFIVCTHR 105
                + Y   N +P++I+ T R
Sbjct:   373 NARLVYK--NGRPDYIIATQR 391

 Score = 36 (17.7 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   156 FQQSDVIHQSVYELI 170


>MGI|MGI:1859778 [details] [associations]
            symbol:Hif3a "hypoxia inducible factor 3, alpha subunit"
            species:10090 "Mus musculus" [GO:0001666 "response to hypoxia"
            evidence=IDA] [GO:0003677 "DNA binding" evidence=IPI] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISO;IPI] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IC] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IPI] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IPI]
            [GO:0007165 "signal transduction" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0046983 "protein dimerization activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 MGI:MGI:1859778 GO:GO:0005634 GO:GO:0005737
            GO:GO:0003677 GO:GO:0001666 GO:GO:0003700 GO:GO:0006366
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            EMBL:AC148976 HOGENOM:HOG000234306 HOVERGEN:HBG060456
            InterPro:IPR021537 Pfam:PF11413 GeneTree:ENSGT00650000093281
            CTD:64344 eggNOG:NOG288942 KO:K09096 EMBL:AF060194 EMBL:AH008971
            EMBL:AF416641 EMBL:BC120587 EMBL:AK144472 IPI:IPI00131181
            IPI:IPI00621179 RefSeq:NP_058564.2 UniGene:Mm.135110
            ProteinModelPortal:Q0VBL6 SMR:Q0VBL6 STRING:Q0VBL6
            PhosphoSite:Q0VBL6 PRIDE:Q0VBL6 Ensembl:ENSMUST00000037762
            GeneID:53417 KEGG:mmu:53417 UCSC:uc009fir.2 UCSC:uc009fit.2
            OrthoDB:EOG4BVRT7 NextBio:310241 Bgee:Q0VBL6 CleanEx:MM_HIF3A
            Genevestigator:Q0VBL6 Uniprot:Q0VBL6
        Length = 662

 Score = 142 (55.0 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 30/96 (31%), Positives = 48/96 (50%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     + GY P +++G S Y+Y H  D D+V      L+ KG+  +  YRFL 
Sbjct:   247 MKFTYCDERIAEVAGYSPDDLIGCSAYEYIHALDSDAVSRSIHTLLSKGQAVTGQYRFLA 306

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             +   ++W QT+  +       + E I+C H ++S V
Sbjct:   307 RTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRV 342


>RGD|70332 [details] [associations]
            symbol:Hif3a "hypoxia inducible factor 3, alpha subunit"
           species:10116 "Rattus norvegicus" [GO:0001666 "response to hypoxia"
           evidence=IEA;ISO;TAS] [GO:0003677 "DNA binding" evidence=IEA;ISO]
           [GO:0003700 "sequence-specific DNA binding transcription factor
           activity" evidence=IEA;ISO;IDA] [GO:0004871 "signal transducer
           activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;IDA]
           [GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA] [GO:0005886 "plasma
           membrane" evidence=IEA;ISO] [GO:0006351 "transcription,
           DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
           transcription, DNA-dependent" evidence=ISO] [GO:0006366
           "transcription from RNA polymerase II promoter" evidence=IEA;ISO]
           [GO:0045944 "positive regulation of transcription from RNA
           polymerase II promoter" evidence=IDA] [GO:0046983 "protein
           dimerization activity" evidence=IEA] InterPro:IPR000014
           InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
           Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888
           SMART:SM00091 SMART:SM00353 InterPro:IPR001610 RGD:70332
           GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0001666
           GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0004871
           SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459 HSSP:Q99814
           HOGENOM:HOG000234306 HOVERGEN:HBG060456 InterPro:IPR021537
           Pfam:PF11413 CTD:64344 eggNOG:NOG288942 KO:K09096 EMBL:AJ277827
           IPI:IPI00199807 RefSeq:NP_071973.1 UniGene:Rn.161814
           ProteinModelPortal:Q9JHS2 STRING:Q9JHS2 PhosphoSite:Q9JHS2
           PRIDE:Q9JHS2 GeneID:64345 KEGG:rno:64345 UCSC:RGD:70332
           InParanoid:Q9JHS2 NextBio:613008 ArrayExpress:Q9JHS2
           Genevestigator:Q9JHS2 Uniprot:Q9JHS2
        Length = 662

 Score = 142 (55.0 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 30/96 (31%), Positives = 48/96 (50%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     + GY P +++G S Y+Y H  D D+V      L+ KG+  +  YRFL 
Sbjct:   247 MKFTYCDERIAEVAGYSPDDLIGCSAYEYIHALDSDAVSRSIHTLLSKGQAVTGQYRFLA 306

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             +   ++W QT+  +       + E I+C H ++S V
Sbjct:   307 RTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRV 342


>UNIPROTKB|Q9JHS2 [details] [associations]
            symbol:Hif3a "Hypoxia-inducible factor 3-alpha"
            species:10116 "Rattus norvegicus" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 RGD:70332 GO:GO:0005634 GO:GO:0005737
            GO:GO:0003677 GO:GO:0001666 GO:GO:0045944 GO:GO:0003700
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            SUPFAM:SSF47459 HSSP:Q99814 HOGENOM:HOG000234306 HOVERGEN:HBG060456
            InterPro:IPR021537 Pfam:PF11413 CTD:64344 eggNOG:NOG288942
            KO:K09096 EMBL:AJ277827 IPI:IPI00199807 RefSeq:NP_071973.1
            UniGene:Rn.161814 ProteinModelPortal:Q9JHS2 STRING:Q9JHS2
            PhosphoSite:Q9JHS2 PRIDE:Q9JHS2 GeneID:64345 KEGG:rno:64345
            UCSC:RGD:70332 InParanoid:Q9JHS2 NextBio:613008 ArrayExpress:Q9JHS2
            Genevestigator:Q9JHS2 Uniprot:Q9JHS2
        Length = 662

 Score = 142 (55.0 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 30/96 (31%), Positives = 48/96 (50%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     + GY P +++G S Y+Y H  D D+V      L+ KG+  +  YRFL 
Sbjct:   247 MKFTYCDERIAEVAGYSPDDLIGCSAYEYIHALDSDAVSRSIHTLLSKGQAVTGQYRFLA 306

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSYV 110
             +   ++W QT+  +       + E I+C H ++S V
Sbjct:   307 RTGGYLWTQTQATVVSGGRGPQSESIICVHFLISRV 342


>UNIPROTKB|E2QWU8 [details] [associations]
            symbol:AHR "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005634 GO:GO:0006355
            GO:GO:0003677 GO:GO:0006351 GO:GO:0004871 SMART:SM00086
            Gene3D:4.10.280.10 SUPFAM:SSF47459 GeneTree:ENSGT00700000104038
            CTD:196 KO:K09093 OMA:QQLCQKM EMBL:AAEX03009350 RefSeq:XP_532485.2
            Ensembl:ENSCAFT00000003863 GeneID:475251 KEGG:cfa:475251
            Uniprot:E2QWU8
        Length = 853

 Score = 129 (50.5 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 30/108 (27%), Positives = 53/108 (49%)

Query:    18 TIYDLVAPPIIGYLPFEV-LGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKG 76
             T  D     ++GY   E+ +  SGY + H  D+      H  +++ GE     +R LTK 
Sbjct:   297 TACDAKGKLVLGYTEAELCMRGSGYQFIHAADMLYCAEYHIRMIKTGESGMIVFRLLTKD 356

Query:    77 QQWIWLQTRFYITYHQWNSKPEFIVCTHRVVSY---VNVLRRDNNQVP 121
              +W W+Q+   + Y   N +P++I+ T R ++       LR+ N ++P
Sbjct:   357 NRWTWVQSNARLVYK--NGRPDYIIATQRPLTDEEGTEHLRKRNMKLP 402

 Score = 36 (17.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   147 FQQSDVIHQSVYELI 161


>UNIPROTKB|Q8QGQ7 [details] [associations]
            symbol:ARNTL2 "Aryl hydrocarbon receptor nuclear
            translocator-like protein 2" species:9031 "Gallus gallus"
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0048511 "rhythmic process" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0048511 GO:GO:0005667 GO:GO:0004871 SMART:SM00086
            TIGRFAMs:TIGR00229 HOGENOM:HOG000234379 Gene3D:4.10.280.10
            SUPFAM:SSF47459 HSSP:P27540 HOVERGEN:HBG107503 EMBL:AF246958
            IPI:IPI00819869 RefSeq:NP_989464.1 UniGene:Gga.2818
            ProteinModelPortal:Q8QGQ7 GeneID:373925 KEGG:gga:373925 CTD:56938
            eggNOG:NOG288887 KO:K09099 NextBio:20813457 Uniprot:Q8QGQ7
        Length = 622

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 32/91 (35%), Positives = 53/91 (58%)

Query:    19 IY-DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-SCYYRFLTKG 76
             +Y D  A  I+GYLP E+LGTS Y+Y H DD + +   H+ ++Q  E   +  Y+F  K 
Sbjct:   367 VYVDQRATAILGYLPQELLGTSCYEYCHQDDHNHLAEKHKEVLQNKEKVFTNSYKFRAKD 426

Query:    77 QQWIWLQTRFYITYHQWNSKPEFIVCTHRVV 107
               +I L+++++   + W  + E+IV  + VV
Sbjct:   427 GSFITLKSQWFSFMNPWTKELEYIVSNNTVV 457


>UNIPROTKB|F1NQL8 [details] [associations]
            symbol:ARNTL2 "Aryl hydrocarbon receptor nuclear
            translocator-like protein 2" species:9031 "Gallus gallus"
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005667 GO:GO:0004871 SMART:SM00086
            TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10
            SUPFAM:SSF47459 IPI:IPI00819869 EMBL:AADN02006684
            Ensembl:ENSGALT00000037361 ArrayExpress:F1NQL8 Uniprot:F1NQL8
        Length = 623

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 32/91 (35%), Positives = 53/91 (58%)

Query:    19 IY-DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-SCYYRFLTKG 76
             +Y D  A  I+GYLP E+LGTS Y+Y H DD + +   H+ ++Q  E   +  Y+F  K 
Sbjct:   368 VYVDQRATAILGYLPQELLGTSCYEYCHQDDHNHLAEKHKEVLQNKEKVFTNSYKFRAKD 427

Query:    77 QQWIWLQTRFYITYHQWNSKPEFIVCTHRVV 107
               +I L+++++   + W  + E+IV  + VV
Sbjct:   428 GSFITLKSQWFSFMNPWTKELEYIVSNNTVV 458


>UNIPROTKB|E1C1C5 [details] [associations]
            symbol:ARNTL2 "Aryl hydrocarbon receptor nuclear
            translocator-like protein 2" species:9031 "Gallus gallus"
            [GO:0004871 "signal transducer activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0000982 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0007623 GO:GO:0045944 GO:GO:0005667 GO:GO:0004871
            GO:GO:0000982 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            OMA:IPQCNPM EMBL:AADN02006684 IPI:IPI00598933
            Ensembl:ENSGALT00000022820 ArrayExpress:E1C1C5 Uniprot:E1C1C5
        Length = 624

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 32/91 (35%), Positives = 53/91 (58%)

Query:    19 IY-DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGT-SCYYRFLTKG 76
             +Y D  A  I+GYLP E+LGTS Y+Y H DD + +   H+ ++Q  E   +  Y+F  K 
Sbjct:   367 VYVDQRATAILGYLPQELLGTSCYEYCHQDDHNHLAEKHKEVLQNKEKVFTNSYKFRAKD 426

Query:    77 QQWIWLQTRFYITYHQWNSKPEFIVCTHRVV 107
               +I L+++++   + W  + E+IV  + VV
Sbjct:   427 GSFITLKSQWFSFMNPWTKELEYIVSNNTVV 457


>UNIPROTKB|P35869 [details] [associations]
            symbol:AHR "Aryl hydrocarbon receptor" species:9606 "Homo
            sapiens" [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0003705 "RNA polymerase
            II distal enhancer sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0030850 "prostate gland
            development" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0045899 "positive regulation of RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA;TAS]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0030888 "regulation of B cell
            proliferation" evidence=IDA] [GO:0010468 "regulation of gene
            expression" evidence=IDA] [GO:0006357 "regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0001568 "blood
            vessel development" evidence=NAS] [GO:0046982 "protein
            heterodimerization activity" evidence=TAS] [GO:0046983 "protein
            dimerization activity" evidence=TAS] [GO:0034752 "cytosolic aryl
            hydrocarbon receptor complex" evidence=TAS] [GO:0005667
            "transcription factor complex" evidence=TAS] [GO:0006805
            "xenobiotic metabolic process" evidence=TAS] [GO:0004879
            "ligand-activated sequence-specific DNA binding RNA polymerase II
            transcription factor activity" evidence=IDA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0009410 "response to xenobiotic stimulus" evidence=IDA]
            [GO:0007049 "cell cycle" evidence=TAS] [GO:0006915 "apoptotic
            process" evidence=TAS] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0006950 "response to
            stress" evidence=IDA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0008134 "transcription factor binding"
            evidence=IPI] [GO:0051879 "Hsp90 protein binding" evidence=IDA]
            [GO:0030522 "intracellular receptor mediated signaling pathway"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0006915 GO:GO:0006950
            GO:GO:0032355 EMBL:CH471073 GO:GO:0004879 GO:GO:0043565
            GO:GO:0071385 EMBL:CH236948 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000122 GO:GO:0044212 GO:GO:0007049 GO:GO:0006805
            GO:GO:0001541 GO:GO:0046982 SMART:SM00086 GO:GO:0001568
            Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG253623 EMBL:D16354
            EMBL:L19872 EMBL:AC003075 EMBL:BC069390 EMBL:BC070080 EMBL:U28063
            EMBL:U27656 EMBL:U27657 EMBL:U28060 EMBL:U28061 EMBL:U28062
            EMBL:U28064 EMBL:U28066 EMBL:U28065 EMBL:D38044 IPI:IPI00021008
            PIR:S59514 RefSeq:NP_001612.1 UniGene:Hs.171189 DisProt:DP00381
            ProteinModelPortal:P35869 SMR:P35869 DIP:DIP-946N IntAct:P35869
            STRING:P35869 PhosphoSite:P35869 DMDM:3041653 PaxDb:P35869
            PRIDE:P35869 Ensembl:ENST00000242057 Ensembl:ENST00000463496
            GeneID:196 KEGG:hsa:196 UCSC:uc011jxz.1 CTD:196
            GeneCards:GC07P017304 HGNC:HGNC:348 HPA:CAB005072 HPA:HPA029722
            HPA:HPA029723 MIM:600253 neXtProt:NX_P35869 PharmGKB:PA24641
            HOGENOM:HOG000252935 HOVERGEN:HBG007313 InParanoid:P35869 KO:K09093
            OMA:QQLCQKM OrthoDB:EOG42BX7X PhylomeDB:P35869 BindingDB:P35869
            ChEMBL:CHEMBL3201 ChiTaRS:AHR GenomeRNAi:196 NextBio:786
            Bgee:P35869 CleanEx:HS_AHR Genevestigator:P35869 GO:GO:0034752
            GO:GO:0051879 GO:GO:0045899 GO:GO:0030850 GO:GO:0030888
            Uniprot:P35869
        Length = 848

 Score = 128 (50.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
 Identities = 28/99 (28%), Positives = 50/99 (50%)

Query:    27 IIGYLPFEVLGT-SGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             ++GY   E+    SGY + H  D+      H  +++ GE     +R LTK  +W W+Q+ 
Sbjct:   307 VLGYTEAELCTRGSGYQFIHAADMLYCAESHIRMIKTGESGMIVFRLLTKNNRWTWVQSN 366

Query:    86 FYITYHQWNSKPEFIVCTHRVVSY---VNVLRRDNNQVP 121
               + Y   N +P++I+ T R ++       LR+ N ++P
Sbjct:   367 ARLLYK--NGRPDYIIVTQRPLTDEEGTEHLRKRNTKLP 403

 Score = 36 (17.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   148 FQQSDVIHQSVYELI 162


>UNIPROTKB|E9PTS2 [details] [associations]
            symbol:Arnt "Aryl hydrocarbon receptor nuclear
            translocator" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005667 "transcription
            factor complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 RGD:2153
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            IPI:IPI00476252 Ensembl:ENSRNOT00000044738 ArrayExpress:E9PTS2
            Uniprot:E9PTS2
        Length = 785

 Score = 123 (48.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
 Identities = 27/114 (23%), Positives = 63/114 (55%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF  K ++W+W++T  
Sbjct:   369 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRAKNREWLWMRTSS 428

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTIKM 140
             +   + ++ + E+I+CT+  V   N  +     + ++ ++S   GP  + +++M
Sbjct:   429 FTFQNPYSDEIEYIICTNTNVK--NSSQEPRPTLSNTIQRSQ-LGPTTNLSLEM 479

 Score = 40 (19.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query:    12 SDLMNSTIYDLVAPPIIGYLPFEVLGTS 39
             S+   ST+YD V P  +  L  E L TS
Sbjct:   187 SEWFGSTLYDQVHPDDVDKLR-EQLSTS 213


>UNIPROTKB|F1LMF9 [details] [associations]
            symbol:Arnt "Aryl hydrocarbon receptor nuclear
            translocator" species:10116 "Rattus norvegicus" [GO:0001666
            "response to hypoxia" evidence=IEA] [GO:0001892 "embryonic placenta
            development" evidence=IEA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0003713 "transcription coactivator
            activity" evidence=IEA] [GO:0004874 "aryl hydrocarbon receptor
            activity" evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0010575
            "positive regulation vascular endothelial growth factor production"
            evidence=IEA] [GO:0017162 "aryl hydrocarbon receptor binding"
            evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0033235 "positive regulation of protein sumoylation"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0043619 "regulation of transcription from RNA
            polymerase II promoter in response to oxidative stress"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0046886
            "positive regulation of hormone biosynthetic process" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 RGD:2153
            GO:GO:0005737 GO:GO:0030154 GO:GO:0043565 GO:GO:0001666
            GO:GO:0045944 GO:GO:0010575 GO:GO:0005667 GO:GO:0003705
            GO:GO:0003713 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GO:GO:0033235 GO:GO:0004874 GO:GO:0001892 GO:GO:0046886
            GO:GO:0043619 IPI:IPI00947650 Ensembl:ENSRNOT00000064442
            ArrayExpress:F1LMF9 Uniprot:F1LMF9
        Length = 801

 Score = 123 (48.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
 Identities = 27/114 (23%), Positives = 63/114 (55%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF  K ++W+W++T  
Sbjct:   384 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRAKNREWLWMRTSS 443

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTIKM 140
             +   + ++ + E+I+CT+  V   N  +     + ++ ++S   GP  + +++M
Sbjct:   444 FTFQNPYSDEIEYIICTNTNVK--NSSQEPRPTLSNTIQRSQ-LGPTTNLSLEM 494

 Score = 40 (19.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query:    12 SDLMNSTIYDLVAPPIIGYLPFEVLGTS 39
             S+   ST+YD V P  +  L  E L TS
Sbjct:   202 SEWFGSTLYDQVHPDDVDKLR-EQLSTS 228


>UNIPROTKB|F1ML85 [details] [associations]
            symbol:AHR "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051879 "Hsp90 protein binding" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0030888 "regulation of B cell proliferation"
            evidence=IEA] [GO:0030850 "prostate gland development"
            evidence=IEA] [GO:0009410 "response to xenobiotic stimulus"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
            binding RNA polymerase II transcription factor activity"
            evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006950 GO:GO:0004879
            GO:GO:0043565 GO:GO:0003705 GO:GO:0000122 GO:GO:0044212
            SMART:SM00086 GO:GO:0009410 Gene3D:4.10.280.10
            GeneTree:ENSGT00700000104038 CTD:196 KO:K09093 OMA:QQLCQKM
            GO:GO:0045899 GO:GO:0030850 GO:GO:0030888 EMBL:DAAA02010042
            IPI:IPI00692346 RefSeq:NP_001192955.1 UniGene:Bt.13046 PRIDE:F1ML85
            Ensembl:ENSBTAT00000010187 GeneID:280714 KEGG:bta:280714
            NextBio:20804893 ArrayExpress:F1ML85 Uniprot:F1ML85
        Length = 844

 Score = 125 (49.1 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
 Identities = 24/80 (30%), Positives = 42/80 (52%)

Query:    27 IIGYLPFEV-LGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             ++GY   E+ +  SGY + H  D+      H  +++ GE     +R LTK  +W W+Q+ 
Sbjct:   306 VLGYTEAELSMRGSGYQFVHAADMLYCAEYHIRMIKTGESGMIVFRLLTKDNRWAWVQSN 365

Query:    86 FYITYHQWNSKPEFIVCTHR 105
               + Y   N +P++I+ T R
Sbjct:   366 ARLVYK--NGRPDYIIATQR 383

 Score = 36 (17.7 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   147 FQQSDVIHQSVYELI 161


>UNIPROTKB|F1NLX8 [details] [associations]
            symbol:AHR "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0003705 "RNA polymerase
            II distal enhancer sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0004879 "ligand-activated
            sequence-specific DNA binding RNA polymerase II transcription
            factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0009410 "response to xenobiotic stimulus"
            evidence=IEA] [GO:0030850 "prostate gland development"
            evidence=IEA] [GO:0030888 "regulation of B cell proliferation"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IEA] [GO:0045899 "positive regulation of RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0051879 "Hsp90 protein binding" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006950 GO:GO:0004879
            GO:GO:0043565 GO:GO:0003705 GO:GO:0000122 GO:GO:0044212
            SMART:SM00086 GO:GO:0009410 Gene3D:4.10.280.10
            GeneTree:ENSGT00700000104038 OMA:QQLCQKM GO:GO:0045899
            GO:GO:0030888 EMBL:AADN02000881 EMBL:AADN02000879 EMBL:AADN02000880
            IPI:IPI00583925 Ensembl:ENSGALT00000017616 Uniprot:F1NLX8
        Length = 839

 Score = 126 (49.4 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
 Identities = 30/100 (30%), Positives = 50/100 (50%)

Query:    27 IIGYLPFEVL--GTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84
             ++GY   E+   GT GY + H  D+      H  +M+ GE     +R LTK  +W W+Q 
Sbjct:   287 VLGYTEAELCMRGT-GYQFIHAADMLYCAENHVRMMKTGESGMTVFRLLTKENRWAWVQA 345

Query:    85 RFYITYHQWNSKPEFIVCTHRVVSY---VNVLRRDNNQVP 121
                + Y   N +P++I+ T R ++       LR+ N ++P
Sbjct:   346 NARLVYK--NGRPDYIISTQRPLTDEEGAEHLRKRNMKLP 383

 Score = 33 (16.7 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
 Identities = 4/15 (26%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++++L+
Sbjct:   128 FQQSDIIHQSVFELI 142


>UNIPROTKB|I3LF82 [details] [associations]
            symbol:AHR "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005634 GO:GO:0005737
            GO:GO:0006950 GO:GO:0004879 GO:GO:0043565 GO:GO:0003705
            GO:GO:0000122 GO:GO:0044212 SMART:SM00086 GO:GO:0009410
            Gene3D:4.10.280.10 SUPFAM:SSF47459 GeneTree:ENSGT00700000104038
            OMA:QQLCQKM GO:GO:0045899 GO:GO:0030850 GO:GO:0030888 EMBL:FP102833
            Ensembl:ENSSSCT00000031031 Uniprot:I3LF82
        Length = 849

 Score = 123 (48.4 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
 Identities = 25/81 (30%), Positives = 42/81 (51%)

Query:    27 IIGYLPFEVL--GTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84
             ++GY   E+   GT GY + H  D+      H  +++ GE     +R LTK  +W W+Q+
Sbjct:   305 VLGYTEAELCMRGT-GYQFIHAADMLYCAEYHVRMIKTGESGMIVFRLLTKDNRWTWVQS 363

Query:    85 RFYITYHQWNSKPEFIVCTHR 105
                + Y   N +P++I+ T R
Sbjct:   364 NARLVYK--NGRPDYIIATQR 382

 Score = 36 (17.7 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   147 FQQSDVIHQSVYELI 161


>RGD|2074 [details] [associations]
            symbol:Ahr "aryl hydrocarbon receptor" species:10116 "Rattus
          norvegicus" [GO:0000122 "negative regulation of transcription from
          RNA polymerase II promoter" evidence=ISO] [GO:0000902 "cell
          morphogenesis" evidence=ISO] [GO:0001541 "ovarian follicle
          development" evidence=IMP] [GO:0001568 "blood vessel development"
          evidence=ISO] [GO:0001569 "patterning of blood vessels" evidence=ISO]
          [GO:0001782 "B cell homeostasis" evidence=ISO] [GO:0001889 "liver
          development" evidence=ISO] [GO:0001974 "blood vessel remodeling"
          evidence=ISO] [GO:0002260 "lymphocyte homeostasis" evidence=ISO]
          [GO:0002376 "immune system process" evidence=ISO] [GO:0003085
          "negative regulation of systemic arterial blood pressure"
          evidence=ISO] [GO:0003214 "cardiac left ventricle morphogenesis"
          evidence=ISO] [GO:0003243 "circumferential growth involved in left
          ventricle morphogenesis" evidence=ISO] [GO:0003677 "DNA binding"
          evidence=ISO;TAS] [GO:0003700 "sequence-specific DNA binding
          transcription factor activity" evidence=ISO;TAS] [GO:0003705 "RNA
          polymerase II distal enhancer sequence-specific DNA binding
          transcription factor activity" evidence=ISO] [GO:0004874 "aryl
          hydrocarbon receptor activity" evidence=IDA;TAS] [GO:0004879
          "ligand-activated sequence-specific DNA binding RNA polymerase II
          transcription factor activity" evidence=ISO;IDA] [GO:0005515 "protein
          binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
          [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
          evidence=ISO;IDA;TAS] [GO:0006355 "regulation of transcription,
          DNA-dependent" evidence=ISO;IDA] [GO:0006357 "regulation of
          transcription from RNA polymerase II promoter" evidence=ISO]
          [GO:0006366 "transcription from RNA polymerase II promoter"
          evidence=ISO;IDA] [GO:0006915 "apoptotic process" evidence=ISO;TAS]
          [GO:0006950 "response to stress" evidence=ISO;IDA] [GO:0007049 "cell
          cycle" evidence=ISO;TAS] [GO:0008015 "blood circulation"
          evidence=ISO] [GO:0008134 "transcription factor binding"
          evidence=ISO] [GO:0009410 "response to xenobiotic stimulus"
          evidence=ISO;IDA;TAS] [GO:0009636 "response to toxic substance"
          evidence=ISO] [GO:0010468 "regulation of gene expression"
          evidence=ISO] [GO:0014070 "response to organic cyclic compound"
          evidence=IEP;IMP] [GO:0030522 "intracellular receptor mediated
          signaling pathway" evidence=ISO;IDA;TAS] [GO:0030850 "prostate gland
          development" evidence=ISO] [GO:0030888 "regulation of B cell
          proliferation" evidence=ISO] [GO:0032355 "response to estradiol
          stimulus" evidence=IEP] [GO:0035162 "embryonic hemopoiesis"
          evidence=ISO] [GO:0035166 "post-embryonic hemopoiesis" evidence=ISO]
          [GO:0040010 "positive regulation of growth rate" evidence=ISO]
          [GO:0043010 "camera-type eye development" evidence=ISO] [GO:0043029
          "T cell homeostasis" evidence=ISO] [GO:0043565 "sequence-specific DNA
          binding" evidence=ISO] [GO:0044212 "transcription regulatory region
          DNA binding" evidence=ISO] [GO:0045793 "positive regulation of cell
          size" evidence=ISO] [GO:0045893 "positive regulation of
          transcription, DNA-dependent" evidence=ISO] [GO:0045899 "positive
          regulation of RNA polymerase II transcriptional preinitiation complex
          assembly" evidence=ISO] [GO:0045906 "negative regulation of
          vasoconstriction" evidence=ISO] [GO:0046982 "protein
          heterodimerization activity" evidence=ISO] [GO:0046983 "protein
          dimerization activity" evidence=IEA] [GO:0048514 "blood vessel
          morphogenesis" evidence=ISO] [GO:0048536 "spleen development"
          evidence=ISO] [GO:0048608 "reproductive structure development"
          evidence=ISO] [GO:0048732 "gland development" evidence=ISO]
          [GO:0048745 "smooth muscle tissue development" evidence=ISO]
          [GO:0050880 "regulation of blood vessel size" evidence=ISO]
          [GO:0051879 "Hsp90 protein binding" evidence=ISO] [GO:0060547
          "negative regulation of necrotic cell death" evidence=ISO]
          [GO:0060841 "venous blood vessel development" evidence=ISO]
          [GO:0060993 "kidney morphogenesis" evidence=ISO] [GO:0061009 "common
          bile duct development" evidence=ISO] [GO:0071320 "cellular response
          to cAMP" evidence=ISO] [GO:0071385 "cellular response to
          glucocorticoid stimulus" evidence=IEP] [GO:0072102 "glomerulus
          morphogenesis" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
          InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
          InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
          PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
          SMART:SM00353 InterPro:IPR001610 RGD:2074 GO:GO:0005829 GO:GO:0005634
          GO:GO:0006915 GO:GO:0006950 GO:GO:0032355 GO:GO:0003677 GO:GO:0004879
          GO:GO:0043565 GO:GO:0071385 GO:GO:0003705 GO:GO:0000122 GO:GO:0044212
          GO:GO:0007049 GO:GO:0001541 SMART:SM00086 GO:GO:0009410
          Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG253623 GO:GO:0004874
          CTD:196 HOGENOM:HOG000252935 HOVERGEN:HBG007313 KO:K09093
          OrthoDB:EOG42BX7X GO:GO:0045899 GO:GO:0030850 GO:GO:0030888
          EMBL:U09000 EMBL:U04860 EMBL:AF082124 EMBL:AF082125 EMBL:AF082126
          IPI:IPI00231916 IPI:IPI00364957 PIR:S58375 RefSeq:NP_037281.2
          UniGene:Rn.91370 ProteinModelPortal:P41738 IntAct:P41738
          STRING:P41738 PhosphoSite:P41738 PRIDE:P41738 GeneID:25690
          KEGG:rno:25690 UCSC:RGD:2074 InParanoid:P41738 BindingDB:P41738
          ChEMBL:CHEMBL5400 NextBio:607689 ArrayExpress:P41738
          Genevestigator:P41738 GermOnline:ENSRNOG00000004342 Uniprot:P41738
        Length = 853

 Score = 121 (47.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query:    27 IIGYLPFEVLGT-SGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             I+GY   E+    SGY + H  D+      H  +++ GE     +R L K  +W W+Q+ 
Sbjct:   305 ILGYTEVELCNKGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAKHSRWRWVQSN 364

Query:    86 FYITYHQWNSKPEFIVCTHR 105
               + Y   N +P++I+ T R
Sbjct:   365 ARLIYR--NGRPDYIIATQR 382

 Score = 36 (17.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   146 FQQSDVIHQSVYELI 160


>UNIPROTKB|G3V6M2 [details] [associations]
            symbol:Ahr "RCG61977, isoform CRA_b" species:10116 "Rattus
            norvegicus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0004879
            "ligand-activated sequence-specific DNA binding RNA polymerase II
            transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006950
            "response to stress" evidence=IEA] [GO:0008134 "transcription
            factor binding" evidence=IEA] [GO:0009410 "response to xenobiotic
            stimulus" evidence=IEA] [GO:0030850 "prostate gland development"
            evidence=IEA] [GO:0030888 "regulation of B cell proliferation"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IEA] [GO:0045899 "positive regulation of RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0051879 "Hsp90 protein binding" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 RGD:2074 GO:GO:0005634 GO:GO:0006355
            GO:GO:0003677 GO:GO:0006351 GO:GO:0004871 SMART:SM00086
            Gene3D:4.10.280.10 SUPFAM:SSF47459 GeneTree:ENSGT00700000104038
            OMA:QQLCQKM EMBL:CH473947 Ensembl:ENSRNOT00000006618 Uniprot:G3V6M2
        Length = 853

 Score = 121 (47.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query:    27 IIGYLPFEVLGT-SGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             I+GY   E+    SGY + H  D+      H  +++ GE     +R L K  +W W+Q+ 
Sbjct:   305 ILGYTEVELCNKGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAKHSRWRWVQSN 364

Query:    86 FYITYHQWNSKPEFIVCTHR 105
               + Y   N +P++I+ T R
Sbjct:   365 ARLIYR--NGRPDYIIATQR 382

 Score = 36 (17.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   146 FQQSDVIHQSVYELI 160


>UNIPROTKB|E1C4K6 [details] [associations]
            symbol:LOC424033 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005634 GO:GO:0006355
            GO:GO:0003677 GO:GO:0006351 GO:GO:0004871 SMART:SM00086
            GeneTree:ENSGT00700000104038 EMBL:AADN02034423 EMBL:AADN02034424
            IPI:IPI00812541 Ensembl:ENSGALT00000008831 OMA:CMERNFT
            Uniprot:E1C4K6
        Length = 755

 Score = 118 (46.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 30/103 (29%), Positives = 50/103 (48%)

Query:    27 IIGYLPFEVLGT-SGYDYYHVDDLDSVVTCH--EALMQKGEGTSCYYRFLTKGQQWIWLQ 83
             ++GY   E+    SGY + H  D+      H    +++ G+  +  +R LTK   W+WLQ
Sbjct:   295 VLGYTEAELCSRGSGYQFVHTADIICCAESHVRAPVIKTGQTGTTVFRLLTKNGSWVWLQ 354

Query:    84 TRFYITYHQWNSKPEFIVCTHRVVSYVNV---LRRDNNQVPDS 123
                ++ Y     +P+ I+   RV+S       LR+ N Q+P S
Sbjct:   355 ATAWLVYK--GDEPDCIISRQRVLSNEEGEEHLRKRNLQLPFS 395

 Score = 37 (18.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SDL+  +IY+L+
Sbjct:   142 FHQSDLIYQSIYELI 156


>UNIPROTKB|E1BY63 [details] [associations]
            symbol:LOC100859347 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086
            GeneTree:ENSGT00700000104038 EMBL:AADN02034423 IPI:IPI00598982
            Ensembl:ENSGALT00000006889 ArrayExpress:E1BY63 Uniprot:E1BY63
        Length = 586

 Score = 130 (50.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query:    27 IIGYLPFEV--LGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84
             ++GY   E+   GT GY + H  D+      H  +M+ GE     +R LTK + W W+Q 
Sbjct:   297 VLGYTEAELRMCGT-GYQFIHAADMLYCAENHIRMMKTGESGLTVFRLLTKDKHWKWVQA 355

Query:    85 RFYITYHQWNSKPEFIVCTHR 105
                + Y   NSKPE+I+ T R
Sbjct:   356 NARLVYK--NSKPEYIIVTQR 374


>UNIPROTKB|F1NWS4 [details] [associations]
            symbol:LOC100859347 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086
            GeneTree:ENSGT00700000104038 OMA:SEGLIFY EMBL:AADN02034423
            IPI:IPI00587681 Ensembl:ENSGALT00000006888 ArrayExpress:F1NWS4
            Uniprot:F1NWS4
        Length = 588

 Score = 130 (50.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query:    27 IIGYLPFEV--LGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQT 84
             ++GY   E+   GT GY + H  D+      H  +M+ GE     +R LTK + W W+Q 
Sbjct:   292 VLGYTEAELRMCGT-GYQFIHAADMLYCAENHIRMMKTGESGLTVFRLLTKDKHWKWVQA 350

Query:    85 RFYITYHQWNSKPEFIVCTHR 105
                + Y   NSKPE+I+ T R
Sbjct:   351 NARLVYK--NSKPEYIIVTQR 369


>UNIPROTKB|E1BSJ1 [details] [associations]
            symbol:SIM2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0009880
            "embryonic pattern specification" evidence=IEA] [GO:0030324 "lung
            development" evidence=IEA] [GO:0046982 "protein heterodimerization
            activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR010578 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF06621
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            PROSITE:PS51302 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0000122 GO:GO:0004871 SMART:SM00086
            GeneTree:ENSGT00700000104038 EMBL:AADN02010800 IPI:IPI00597363
            Ensembl:ENSGALT00000025849 OMA:FEPQDLI Uniprot:E1BSJ1
        Length = 419

 Score = 127 (49.8 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 30/102 (29%), Positives = 56/102 (54%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D+  +   H  L+ KG+ T+ YYR L+K   W+W+Q+  
Sbjct:   252 LTGYEPQDLIEKTLYHHVHGCDVFHLRYAHHLLLVKGQVTTKYYRLLSKQGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNV--LRRDNNQVPDSEEQ 126
              I ++  +S+P  IV  + V++ +    L+   +QV  S+ Q
Sbjct:   312 TIVHNSRSSRPHCIVSVNYVLTDIEYKELQLSLDQVTISKSQ 353


>UNIPROTKB|Q8R4S2 [details] [associations]
            symbol:Ahr "Aryl hydrocarbon receptor" species:10096 "Mus
            spretus" [GO:0004879 "ligand-activated sequence-specific DNA
            binding RNA polymerase II transcription factor activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006915 "apoptotic process" evidence=ISS]
            [GO:0006950 "response to stress" evidence=ISS] [GO:0007049 "cell
            cycle" evidence=ISS] [GO:0009410 "response to xenobiotic stimulus"
            evidence=ISS] [GO:0030522 "intracellular receptor mediated
            signaling pathway" evidence=ISS] InterPro:IPR000014
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 MGI:MGI:105043 GO:GO:0005634 GO:GO:0005737
            GO:GO:0006915 GO:GO:0006950 GO:GO:0003677 GO:GO:0004879
            GO:GO:0007049 SMART:SM00086 GO:GO:0009410 Gene3D:4.10.280.10
            SUPFAM:SSF47459 HOVERGEN:HBG007313 EMBL:AF405571
            ProteinModelPortal:Q8R4S2 PRIDE:Q8R4S2 Uniprot:Q8R4S2
        Length = 854

 Score = 119 (46.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query:    27 IIGYLPFEVLGT-SGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             I+GY   E+    SGY + H  D+      H  +++ GE     +R L K  +W W+Q+ 
Sbjct:   305 ILGYTEVELCTRGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAKHSRWRWVQSN 364

Query:    86 FYITYHQWNSKPEFIVCTHR 105
               + Y   N +P++I+ T R
Sbjct:   365 ARLIYR--NGRPDYIIATQR 382

 Score = 36 (17.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   146 FQQSDVIHQSVYELI 160


>UNIPROTKB|Q8R4S4 [details] [associations]
            symbol:Ahr "Aryl hydrocarbon receptor" species:10103 "Mus
            spicilegus" [GO:0004879 "ligand-activated sequence-specific DNA
            binding RNA polymerase II transcription factor activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006915 "apoptotic process" evidence=ISS]
            [GO:0006950 "response to stress" evidence=ISS] [GO:0007049 "cell
            cycle" evidence=ISS] [GO:0009410 "response to xenobiotic stimulus"
            evidence=ISS] [GO:0030522 "intracellular receptor mediated
            signaling pathway" evidence=ISS] InterPro:IPR000014
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 MGI:MGI:105043 GO:GO:0005634 GO:GO:0005737
            GO:GO:0006915 GO:GO:0006950 GO:GO:0003677 GO:GO:0004879
            GO:GO:0007049 SMART:SM00086 GO:GO:0009410 Gene3D:4.10.280.10
            SUPFAM:SSF47459 HOVERGEN:HBG007313 EMBL:AF405569
            ProteinModelPortal:Q8R4S4 Uniprot:Q8R4S4
        Length = 854

 Score = 119 (46.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query:    27 IIGYLPFEVLGT-SGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             I+GY   E+    SGY + H  D+      H  +++ GE     +R L K  +W W+Q+ 
Sbjct:   305 ILGYTEVELCTRGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAKHSRWRWVQSN 364

Query:    86 FYITYHQWNSKPEFIVCTHR 105
               + Y   N +P++I+ T R
Sbjct:   365 ARLIYR--NGRPDYIIATQR 382

 Score = 36 (17.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   146 FQQSDVIHQSVYELI 160


>UNIPROTKB|Q8R4S7 [details] [associations]
            symbol:Ahr "Aryl hydrocarbon receptor" species:10089 "Mus
            caroli" [GO:0004879 "ligand-activated sequence-specific DNA binding
            RNA polymerase II transcription factor activity" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0006915 "apoptotic process" evidence=ISS] [GO:0006950 "response
            to stress" evidence=ISS] [GO:0007049 "cell cycle" evidence=ISS]
            [GO:0009410 "response to xenobiotic stimulus" evidence=ISS]
            [GO:0030522 "intracellular receptor mediated signaling pathway"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 MGI:MGI:105043
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 GO:GO:0006950
            GO:GO:0003677 GO:GO:0004879 GO:GO:0007049 SMART:SM00086
            GO:GO:0009410 Gene3D:4.10.280.10 SUPFAM:SSF47459 HOVERGEN:HBG007313
            EMBL:AF405564 ProteinModelPortal:Q8R4S7 Uniprot:Q8R4S7
        Length = 854

 Score = 119 (46.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query:    27 IIGYLPFEVLGT-SGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             I+GY   E+    SGY + H  D+      H  +++ GE     +R L K  +W W+Q+ 
Sbjct:   305 ILGYTEVELCTRGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAKHSRWRWVQSN 364

Query:    86 FYITYHQWNSKPEFIVCTHR 105
               + Y   N +P++I+ T R
Sbjct:   365 ARLIYR--NGRPDYIIATQR 382

 Score = 36 (17.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   146 FQQSDVIHQSVYELI 160


>ZFIN|ZDB-GENE-041210-5 [details] [associations]
            symbol:sim1b "single-minded homolog 1b (Drosophila)"
            species:7955 "Danio rerio" [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0007165 "signal transduction"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR010578 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF06621
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            ZFIN:ZDB-GENE-041210-5 GO:GO:0005737 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005667 GO:GO:0004871 SMART:SM00086
            SUPFAM:SSF47459 GeneTree:ENSGT00700000104038 eggNOG:NOG310284
            HOGENOM:HOG000236298 EMBL:BX649468 OrthoDB:EOG4QC14V EMBL:FJ654702
            IPI:IPI00929984 RefSeq:NP_001153057.1 UniGene:Dr.155154
            Ensembl:ENSDART00000023483 GeneID:566656 KEGG:dre:566656 CTD:566656
            NextBio:20888303 Uniprot:C1JIE2
        Length = 586

 Score = 129 (50.5 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 26/82 (31%), Positives = 47/82 (57%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D   +   H  L+ KG+ T+ YYRFL+K   W+W+Q+  
Sbjct:   260 LTGYEPQDLIEKTLYHHVHCCDSFHLRCAHHLLLVKGQVTTKYYRFLSKRGGWVWVQSYA 319

Query:    87 YITYHQWNSKPEFIVCTHRVVS 108
              I ++  +S+P  IV  + V++
Sbjct:   320 TIVHNSRSSRPHCIVSVNYVLT 341


>UNIPROTKB|Q8R4S5 [details] [associations]
            symbol:Ahr "Aryl hydrocarbon receptor" species:57486 "Mus
            musculus molossinus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISO;IDA;TAS] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0004879 "ligand-activated
            sequence-specific DNA binding RNA polymerase II transcription
            factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005667 "transcription factor complex" evidence=TAS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0006805 "xenobiotic metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=ISS] [GO:0006950 "response
            to stress" evidence=ISS] [GO:0007049 "cell cycle" evidence=ISS]
            [GO:0009410 "response to xenobiotic stimulus" evidence=ISS]
            [GO:0030522 "intracellular receptor mediated signaling pathway"
            evidence=ISS] [GO:0030850 "prostate gland development"
            evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IDA] [GO:0045899 "positive regulation of
            RNA polymerase II transcriptional preinitiation complex assembly"
            evidence=IDA] [GO:0048608 "reproductive structure development"
            evidence=IMP] [GO:0048732 "gland development" evidence=IMP]
            InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 MGI:MGI:105043 GO:GO:0005737
            GO:GO:0006915 GO:GO:0006950 GO:GO:0004879 GO:GO:0043565
            GO:GO:0005667 GO:GO:0003705 GO:GO:0000122 GO:GO:0007049
            GO:GO:0006805 SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459
            HOVERGEN:HBG007313 GO:GO:0045899 GO:GO:0030850 UniGene:Mm.341377
            EMBL:AF405568 ProteinModelPortal:Q8R4S5 SMR:Q8R4S5 Uniprot:Q8R4S5
        Length = 883

 Score = 119 (46.9 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query:    27 IIGYLPFEVLGT-SGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             I+GY   E+    SGY + H  D+      H  +++ GE     +R L K  +W W+Q+ 
Sbjct:   301 ILGYTEVELCTRGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAKHSRWRWVQSN 360

Query:    86 FYITYHQWNSKPEFIVCTHR 105
               + Y   N +P++I+ T R
Sbjct:   361 ARLIYR--NGRPDYIIATQR 378

 Score = 36 (17.7 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   146 FQQSDVIHQSVYELI 160


>UNIPROTKB|H7BZX8 [details] [associations]
            symbol:SIM2 "Single-minded homolog 2" species:9606 "Homo
            sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR010578 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF06621 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS51302 SMART:SM00091 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0004871
            SMART:SM00086 EMBL:AP000697 EMBL:AP000698 HGNC:HGNC:10883
            ProteinModelPortal:H7BZX8 Ensembl:ENST00000431229 Uniprot:H7BZX8
        Length = 480

 Score = 127 (49.8 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 28/104 (26%), Positives = 56/104 (53%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D+  +   H  L+ KG+ T+ YYR L+K   W+W+Q+  
Sbjct:   190 VTGYEPQDLIEKTLYHHVHGCDVFHLRYAHHLLLVKGQVTTKYYRLLSKRGGWVWVQSYA 249

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNV--LRRDNNQVPDSEEQSN 128
              + ++  +S+P  IV  + V++ +    L+    QV  ++ Q +
Sbjct:   250 TVVHNSRSSRPHCIVSVNYVLTEIEYKELQLSLEQVSTAKSQDS 293


>UNIPROTKB|Q8R4S6 [details] [associations]
            symbol:Ahr "Aryl hydrocarbon receptor" species:10091 "Mus
            musculus castaneus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISO;IDA;TAS] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0004879 "ligand-activated
            sequence-specific DNA binding RNA polymerase II transcription
            factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005667 "transcription factor complex" evidence=TAS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0006805 "xenobiotic metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=ISS] [GO:0006950 "response
            to stress" evidence=ISS] [GO:0007049 "cell cycle" evidence=ISS]
            [GO:0009410 "response to xenobiotic stimulus" evidence=ISS]
            [GO:0030522 "intracellular receptor mediated signaling pathway"
            evidence=ISS] [GO:0030850 "prostate gland development"
            evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IDA] [GO:0045899 "positive regulation of
            RNA polymerase II transcriptional preinitiation complex assembly"
            evidence=IDA] [GO:0048608 "reproductive structure development"
            evidence=IMP] [GO:0048732 "gland development" evidence=IMP]
            InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 MGI:MGI:105043 GO:GO:0005737
            GO:GO:0006915 GO:GO:0006950 GO:GO:0004879 GO:GO:0043565
            GO:GO:0005667 GO:GO:0003705 GO:GO:0000122 GO:GO:0007049
            GO:GO:0006805 SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459
            HOVERGEN:HBG007313 GO:GO:0045899 GO:GO:0030850 EMBL:AF405565
            UniGene:Mm.341377 ProteinModelPortal:Q8R4S6 SMR:Q8R4S6
            Uniprot:Q8R4S6
        Length = 848

 Score = 118 (46.6 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query:    27 IIGYLPFEVLGT-SGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             I+GY   E+    SGY + H  D+      H  +++ GE     +R L K  +W W+Q+ 
Sbjct:   301 ILGYTEVELCTRGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAKHSRWRWVQSN 360

Query:    86 FYITYHQWNSKPEFIVCTHR 105
               + Y   N +P++I+ T R
Sbjct:   361 ARLIYR--NGRPDYIIVTQR 378

 Score = 36 (17.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   146 FQQSDVIHQSVYELI 160


>MGI|MGI:105043 [details] [associations]
            symbol:Ahr "aryl-hydrocarbon receptor" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0000902 "cell
            morphogenesis" evidence=IMP] [GO:0001541 "ovarian follicle
            development" evidence=ISO] [GO:0001568 "blood vessel development"
            evidence=IMP] [GO:0001569 "patterning of blood vessels"
            evidence=IMP] [GO:0001782 "B cell homeostasis" evidence=IMP;TAS]
            [GO:0001889 "liver development" evidence=IMP] [GO:0001922 "B-1 B
            cell homeostasis" evidence=TAS] [GO:0001974 "blood vessel
            remodeling" evidence=IMP] [GO:0002260 "lymphocyte homeostasis"
            evidence=IMP;TAS] [GO:0002376 "immune system process" evidence=IMP]
            [GO:0003085 "negative regulation of systemic arterial blood
            pressure" evidence=IMP] [GO:0003214 "cardiac left ventricle
            morphogenesis" evidence=IMP] [GO:0003243 "circumferential growth
            involved in left ventricle morphogenesis" evidence=IMP] [GO:0003677
            "DNA binding" evidence=ISO;IDA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISO;IDA;TAS]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IDA]
            [GO:0004871 "signal transducer activity" evidence=IEA] [GO:0004874
            "aryl hydrocarbon receptor activity" evidence=ISO] [GO:0004879
            "ligand-activated sequence-specific DNA binding RNA polymerase II
            transcription factor activity" evidence=ISO;IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
            evidence=TAS] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005829
            "cytosol" evidence=ISO;IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISO;IDA;TAS] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO;IDA] [GO:0006805 "xenobiotic metabolic
            process" evidence=TAS] [GO:0006915 "apoptotic process"
            evidence=IDA] [GO:0006950 "response to stress" evidence=ISO;IDA]
            [GO:0007049 "cell cycle" evidence=IDA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0008015 "blood circulation"
            evidence=IMP] [GO:0008134 "transcription factor binding"
            evidence=ISO] [GO:0008217 "regulation of blood pressure"
            evidence=TAS] [GO:0009410 "response to xenobiotic stimulus"
            evidence=ISO;IDA] [GO:0009636 "response to toxic substance"
            evidence=IDA] [GO:0010468 "regulation of gene expression"
            evidence=ISO] [GO:0014070 "response to organic cyclic compound"
            evidence=ISO] [GO:0030183 "B cell differentiation" evidence=TAS]
            [GO:0030522 "intracellular receptor mediated signaling pathway"
            evidence=ISO] [GO:0030850 "prostate gland development"
            evidence=IMP] [GO:0030888 "regulation of B cell proliferation"
            evidence=ISO] [GO:0034751 "aryl hydrocarbon receptor complex"
            evidence=TAS] [GO:0034752 "cytosolic aryl hydrocarbon receptor
            complex" evidence=TAS] [GO:0034753 "nuclear aryl hydrocarbon
            receptor complex" evidence=TAS] [GO:0035162 "embryonic hemopoiesis"
            evidence=IMP] [GO:0035166 "post-embryonic hemopoiesis"
            evidence=IMP] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0043010 "camera-type eye development"
            evidence=IMP] [GO:0043029 "T cell homeostasis" evidence=IMP]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=ISO] [GO:0045793 "positive regulation of cell size"
            evidence=IMP] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IDA] [GO:0045899 "positive regulation of
            RNA polymerase II transcriptional preinitiation complex assembly"
            evidence=IDA] [GO:0045906 "negative regulation of vasoconstriction"
            evidence=IMP] [GO:0046982 "protein heterodimerization activity"
            evidence=IPI] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0048514 "blood vessel morphogenesis"
            evidence=IMP] [GO:0048536 "spleen development" evidence=IMP]
            [GO:0048608 "reproductive structure development" evidence=IMP]
            [GO:0048732 "gland development" evidence=IMP] [GO:0048745 "smooth
            muscle tissue development" evidence=IMP] [GO:0050880 "regulation of
            blood vessel size" evidence=IMP] [GO:0051879 "Hsp90 protein
            binding" evidence=ISO;TAS] [GO:0060420 "regulation of heart growth"
            evidence=TAS] [GO:0060547 "negative regulation of necrotic cell
            death" evidence=IMP] [GO:0060841 "venous blood vessel development"
            evidence=IMP] [GO:0060993 "kidney morphogenesis" evidence=IMP]
            [GO:0061009 "common bile duct development" evidence=IMP]
            [GO:0071320 "cellular response to cAMP" evidence=IDA] [GO:0072102
            "glomerulus morphogenesis" evidence=IMP] InterPro:IPR000014
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 MGI:MGI:105043 GO:GO:0005737 GO:GO:0006915
            GO:GO:0006950 GO:GO:0004879 GO:GO:0043565 GO:GO:0005667
            GO:GO:0003705 GO:GO:0000122 GO:GO:0007049 GO:GO:0006805
            SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459 HOVERGEN:HBG007313
            GO:GO:0045899 GO:GO:0030850 EMBL:AF405565 UniGene:Mm.341377
            ProteinModelPortal:Q8R4S6 SMR:Q8R4S6 Uniprot:Q8R4S6
        Length = 848

 Score = 118 (46.6 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query:    27 IIGYLPFEVLGT-SGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             I+GY   E+    SGY + H  D+      H  +++ GE     +R L K  +W W+Q+ 
Sbjct:   301 ILGYTEVELCTRGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAKHSRWRWVQSN 360

Query:    86 FYITYHQWNSKPEFIVCTHR 105
               + Y   N +P++I+ T R
Sbjct:   361 ARLIYR--NGRPDYIIVTQR 378

 Score = 36 (17.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query:     9 FCMSDLMNSTIYDLV 23
             F  SD+++ ++Y+L+
Sbjct:   146 FQQSDVIHQSVYELI 160


>UNIPROTKB|E1BJ63 [details] [associations]
            symbol:E1BJ63 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000014
            InterPro:IPR010578 InterPro:IPR013655 Pfam:PF06621 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS51302 SMART:SM00091 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0004871
            SMART:SM00086 GeneTree:ENSGT00700000104038 EMBL:DAAA02003571
            EMBL:DAAA02003572 IPI:IPI00695521 Ensembl:ENSBTAT00000028592
            Uniprot:E1BJ63
        Length = 540

 Score = 127 (49.8 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 29/104 (27%), Positives = 57/104 (54%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D+  +   H  L+ KG+ T+ YYR L+K   W+W+Q+  
Sbjct:   137 LTGYEPQDLIEKTLYHHVHGCDVFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYA 196

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNV--LRRDNNQVPDSEEQSN 128
              + ++  +S+P  IV  + V++ +    L+   +QV  S+ Q +
Sbjct:   197 TVVHNSRSSRPHCIVSVNYVLTDIEYKELQLSLDQVSTSKSQDS 240


>UNIPROTKB|F1MKK8 [details] [associations]
            symbol:LOC782260 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
            [GO:0009880 "embryonic pattern specification" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR010578 InterPro:IPR013655
            Pfam:PF06621 Pfam:PF08447 PROSITE:PS50112 PROSITE:PS51302
            SMART:SM00091 InterPro:IPR001610 GO:GO:0005634 GO:GO:0003677
            GO:GO:0030324 GO:GO:0003700 GO:GO:0000122 GO:GO:0004871
            SMART:SM00086 GeneTree:ENSGT00700000104038 GO:GO:0009880
            OMA:KKPMLPA EMBL:DAAA02003571 EMBL:DAAA02003572 IPI:IPI00905160
            Ensembl:ENSBTAT00000052408 Uniprot:F1MKK8
        Length = 555

 Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 29/104 (27%), Positives = 57/104 (54%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D+  +   H  L+ KG+ T+ YYR L+K   W+W+Q+  
Sbjct:   137 LTGYEPQDLIEKTLYHHVHGCDVFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYA 196

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNV--LRRDNNQVPDSEEQSN 128
              + ++  +S+P  IV  + V++ +    L+   +QV  S+ Q +
Sbjct:   197 TVVHNSRSSRPHCIVSVNYVLTDIEYKELQLSLDQVSTSKSQDS 240


>ZFIN|ZDB-GENE-050211-2 [details] [associations]
            symbol:hif1al2 "hypoxia-inducible factor 1, alpha
            subunit, like 2" species:7955 "Danio rerio" [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            ZFIN:ZDB-GENE-050211-2 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            SUPFAM:SSF47459 InterPro:IPR014887 InterPro:IPR021537 Pfam:PF11413
            Pfam:PF08778 GeneTree:ENSGT00650000093281 EMBL:BX530031
            IPI:IPI00554390 Ensembl:ENSDART00000130632 ArrayExpress:F1QQQ1
            Bgee:F1QQQ1 Uniprot:F1QQQ1
        Length = 663

 Score = 128 (50.1 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             +IG+   ++LG S Y YYH  D   +   H  L+ KG+ ++  YR L +   ++W +T  
Sbjct:   264 LIGFRDTDLLGQSVYQYYHPSDCQQIRKAHICLLSKGQVSTGKYRLLHRYGGYVWAETDA 323

Query:    87 YITYHQWNSKPEFIVCTHRVVSYV 110
              +  +     PE +VC + ++S V
Sbjct:   324 SLVCNSQTGVPESVVCINYILSEV 347


>ZFIN|ZDB-GENE-020829-1 [details] [associations]
            symbol:sim1a "single-minded homolog 1a (Drosophila)"
            species:7955 "Danio rerio" [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007165
            "signal transduction" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0071542 "dopaminergic neuron differentiation" evidence=IGI;IMP]
            [GO:0030154 "cell differentiation" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0007399 "nervous
            system development" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0021979 "hypothalamus
            cell differentiation" evidence=IMP] [GO:0021536 "diencephalon
            development" evidence=IMP] InterPro:IPR000014 InterPro:IPR010578
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF06621 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50113 PROSITE:PS50888 PROSITE:PS51302 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 ZFIN:ZDB-GENE-020829-1
            GO:GO:0005634 GO:GO:0003677 GO:GO:0071542 GO:GO:0003700
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            Gene3D:4.10.280.10 HSSP:Q99814 eggNOG:NOG310284 GO:GO:0021979
            EMBL:AY028626 IPI:IPI00494277 RefSeq:NP_835740.1 UniGene:Dr.25265
            ProteinModelPortal:Q98SJ5 STRING:Q98SJ5 GeneID:260351
            KEGG:dre:260351 CTD:260351 HOVERGEN:HBG003936 KO:K09100
            OrthoDB:EOG4QC14V NextBio:20804722 ArrayExpress:Q98SJ5
            Uniprot:Q98SJ5
        Length = 745

 Score = 128 (50.1 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D   +   H  L+ KG+ T+ YYRFL K   W+W+Q+  
Sbjct:   252 LTGYEPQDLIEKTLYHHVHSCDTFHLRCAHHLLLVKGQVTTKYYRFLAKQGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIVCTHRVVS 108
              I ++  +S+P  IV  + V++
Sbjct:   312 TIVHNSRSSRPHCIVSVNYVLT 333


>RGD|2153 [details] [associations]
            symbol:Arnt "aryl hydrocarbon receptor nuclear translocator"
          species:10116 "Rattus norvegicus" [GO:0000989 "transcription factor
          binding transcription factor activity" evidence=ISO] [GO:0001666
          "response to hypoxia" evidence=IEP;ISO] [GO:0001892 "embryonic
          placenta development" evidence=ISO] [GO:0003677 "DNA binding"
          evidence=IEA;ISO] [GO:0003700 "sequence-specific DNA binding
          transcription factor activity" evidence=IEA] [GO:0003713
          "transcription coactivator activity" evidence=ISO] [GO:0004871
          "signal transducer activity" evidence=IEA] [GO:0004874 "aryl
          hydrocarbon receptor activity" evidence=ISO] [GO:0005515 "protein
          binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
          [GO:0005667 "transcription factor complex" evidence=IEA;ISO]
          [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006351 "transcription,
          DNA-dependent" evidence=IEA] [GO:0008134 "transcription factor
          binding" evidence=ISO] [GO:0009636 "response to toxic substance"
          evidence=NAS] [GO:0010575 "positive regulation vascular endothelial
          growth factor production" evidence=ISO] [GO:0017162 "aryl hydrocarbon
          receptor binding" evidence=ISO] [GO:0030154 "cell differentiation"
          evidence=ISO] [GO:0030522 "intracellular receptor mediated signaling
          pathway" evidence=ISO] [GO:0033235 "positive regulation of protein
          sumoylation" evidence=ISO] [GO:0043619 "regulation of transcription
          from RNA polymerase II promoter in response to oxidative stress"
          evidence=ISO] [GO:0045893 "positive regulation of transcription,
          DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
          transcription from RNA polymerase II promoter" evidence=ISO]
          [GO:0046886 "positive regulation of hormone biosynthetic process"
          evidence=ISO] [GO:0046982 "protein heterodimerization activity"
          evidence=ISO;IDA] [GO:2001141 "regulation of RNA biosynthetic
          process" evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
          evidence=ISO;IDA] [GO:0003705 "RNA polymerase II distal enhancer
          sequence-specific DNA binding transcription factor activity"
          evidence=ISO] InterPro:IPR000014 InterPro:IPR001067
          InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010
          Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112
          PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
          InterPro:IPR001610 RGD:2153 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
          GO:GO:0009636 GO:GO:0043565 GO:GO:0001666 GO:GO:0045944 GO:GO:0010575
          GO:GO:0005667 GO:GO:0003705 GO:GO:0003713 GO:GO:0046982 SMART:SM00086
          TIGRFAMs:TIGR00229 eggNOG:NOG293303 Gene3D:4.10.280.10
          SUPFAM:SSF47459 GO:GO:0033235 GO:GO:0004874 HOVERGEN:HBG000164
          CTD:405 KO:K09097 GO:GO:0001892 GO:GO:0046886 GO:GO:0043619
          EMBL:U61184 EMBL:U08986 IPI:IPI00195864 PIR:S58376 RefSeq:NP_036912.1
          UniGene:Rn.10520 ProteinModelPortal:P41739 SMR:P41739 IntAct:P41739
          STRING:P41739 PhosphoSite:P41739 PRIDE:P41739 GeneID:25242
          KEGG:rno:25242 UCSC:RGD:2153 InParanoid:P41739 NextBio:605831
          ArrayExpress:P41739 Genevestigator:P41739
          GermOnline:ENSRNOG00000031174 Uniprot:P41739
        Length = 800

 Score = 112 (44.5 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
 Identities = 25/114 (21%), Positives = 60/114 (52%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF  K ++W+W++T  
Sbjct:   384 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRAKNREWLWMRTSS 443

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTIKM 140
             +   + ++ +    +CT+  V   N  +     + ++ ++S   GP  + +++M
Sbjct:   444 FTFQNPYSDEMSIFICTNTNVK--NSSQEPRPTLSNTIQRSQ-LGPTTNLSLEM 494

 Score = 40 (19.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query:    12 SDLMNSTIYDLVAPPIIGYLPFEVLGTS 39
             S+   ST+YD V P  +  L  E L TS
Sbjct:   202 SEWFGSTLYDQVHPDDVDKLR-EQLSTS 228


>RGD|1308016 [details] [associations]
            symbol:Sim2 "single-minded homolog 2 (Drosophila)" species:10116
            "Rattus norvegicus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA;ISO]
            [GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0009880 "embryonic
            pattern specification" evidence=IEA;ISO] [GO:0030324 "lung
            development" evidence=IEA;ISO] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0046982 "protein
            heterodimerization activity" evidence=IEA;ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR000014 InterPro:IPR010578
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF06621 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50888 PROSITE:PS51302 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 RGD:1308016 GO:GO:0005634 GO:GO:0003677
            GO:GO:0030324 GO:GO:0003700 GO:GO:0006351 GO:GO:0000122
            GO:GO:0004871 SMART:SM00086 GeneTree:ENSGT00700000104038
            GO:GO:0009880 KO:K09100 CTD:6493 OrthoDB:EOG43N7CB EMBL:CH474083
            IPI:IPI00362902 RefSeq:NP_001100578.1 UniGene:Rn.113883
            Ensembl:ENSRNOT00000002294 GeneID:304071 KEGG:rno:304071
            UCSC:RGD:1308016 NextBio:652548 Uniprot:D4AA36
        Length = 656

 Score = 127 (49.8 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 30/104 (28%), Positives = 56/104 (53%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D   +   H  L+ KG+ T+ YYR L+K   W+W+Q+  
Sbjct:   252 LTGYEPQDLIEKTLYHHVHGCDTFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNV--LRRDNNQVPDSEEQSN 128
              + ++  +S+P  IV  + V++ V    L+   +QV  S+ Q +
Sbjct:   312 TVVHNSRSSRPHCIVSVNYVLTEVEYKELQLSLDQVSTSKSQES 355


>UNIPROTKB|Q14190 [details] [associations]
            symbol:SIM2 "Single-minded homolog 2" species:9606 "Homo
            sapiens" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0007399 "nervous system development"
            evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0009880 "embryonic pattern specification"
            evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000014 InterPro:IPR010578
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF06621 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50113 PROSITE:PS50888 PROSITE:PS51302 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005634 GO:GO:0007399
            GO:GO:0030154 GO:GO:0003677 GO:GO:0030324 EMBL:CH471079
            GO:GO:0003700 GO:GO:0006351 GO:GO:0000122 GO:GO:0004871
            SMART:SM00086 GO:GO:0009880 EMBL:AP000697 EMBL:AP001726
            eggNOG:NOG310284 HOVERGEN:HBG003936 KO:K09100 EMBL:U80456
            EMBL:U80457 EMBL:AB003185 EMBL:BC110444 EMBL:D85922 EMBL:D44444
            EMBL:D44445 EMBL:D44446 EMBL:D44447 EMBL:D44448 EMBL:AJ001858
            EMBL:X84790 EMBL:D70838 IPI:IPI00029105 IPI:IPI00220895 PIR:A58520
            PIR:I78525 PIR:I78526 RefSeq:NP_005060.1 RefSeq:NP_033664.2
            UniGene:Hs.146186 ProteinModelPortal:Q14190 SMR:Q14190
            IntAct:Q14190 STRING:Q14190 PhosphoSite:Q14190 DMDM:2851630
            PaxDb:Q14190 PRIDE:Q14190 Ensembl:ENST00000290399
            Ensembl:ENST00000430056 GeneID:6493 KEGG:hsa:6493 UCSC:uc002yvq.3
            UCSC:uc002yvr.2 CTD:6493 GeneCards:GC21P038071 HGNC:HGNC:10883
            HPA:HPA029295 MIM:600892 neXtProt:NX_Q14190 PharmGKB:PA35783
            InParanoid:Q14190 OMA:KKPMLPA OrthoDB:EOG43N7CB PhylomeDB:Q14190
            GenomeRNAi:6493 NextBio:25235 Bgee:Q14190 CleanEx:HS_SIM2
            Genevestigator:Q14190 GermOnline:ENSG00000159263 Uniprot:Q14190
        Length = 667

 Score = 127 (49.8 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 28/104 (26%), Positives = 56/104 (53%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D+  +   H  L+ KG+ T+ YYR L+K   W+W+Q+  
Sbjct:   252 VTGYEPQDLIEKTLYHHVHGCDVFHLRYAHHLLLVKGQVTTKYYRLLSKRGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNV--LRRDNNQVPDSEEQSN 128
              + ++  +S+P  IV  + V++ +    L+    QV  ++ Q +
Sbjct:   312 TVVHNSRSSRPHCIVSVNYVLTEIEYKELQLSLEQVSTAKSQDS 355


>UNIPROTKB|F1NPM8 [details] [associations]
            symbol:PER2 "Period circadian protein homolog 2"
            species:9031 "Gallus gallus" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000014 InterPro:IPR013655
            Pfam:PF08447 PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610
            GO:GO:0006355 GO:GO:0004871 SMART:SM00086 InterPro:IPR022728
            Pfam:PF12114 GeneTree:ENSGT00510000046467 EMBL:AADN02024209
            EMBL:AADN02024210 IPI:IPI00680148 Ensembl:ENSGALT00000033729
            ArrayExpress:F1NPM8 Uniprot:F1NPM8
        Length = 1291

 Score = 114 (45.2 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
 Identities = 25/85 (29%), Positives = 45/85 (52%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY--YRFLTKGQQWIW 81
             A P++GYLP +++GT    + H +D   ++  H+ ++Q G     Y   RF T+   +I 
Sbjct:   341 AVPLLGYLPQDLIGTPVLVHLHPNDRPLMLAIHKKILQYGGQPFDYSPIRFCTRNGDYIT 400

Query:    82 LQTRFYITYHQWNSKPEFIVCTHRV 106
             + T +    + W+ K  FI+  H+V
Sbjct:   401 MDTSWSSFINPWSRKVSFIIGRHKV 425

 Score = 42 (19.8 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query:    96 KPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTI 138
             KPE +V      SY + +    ++ P  E +  + GP  +  +
Sbjct:   665 KPESVVSLTSQCSYSSTIVHVGDKKPQPELEMIEDGPSGAEVL 707


>UNIPROTKB|I3LA51 [details] [associations]
            symbol:SIM2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
            [GO:0009880 "embryonic pattern specification" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR010578 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF06621 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS51302 SMART:SM00091 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0003677 GO:GO:0030324 GO:GO:0003700
            GO:GO:0000122 GO:GO:0004871 SMART:SM00086
            GeneTree:ENSGT00700000104038 GO:GO:0009880 OMA:KKPMLPA
            EMBL:FP325296 Ensembl:ENSSSCT00000025022 Uniprot:I3LA51
        Length = 614

 Score = 126 (49.4 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 29/104 (27%), Positives = 57/104 (54%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D+  +   H  L+ KG+ T+ YYR L+K   W+W+Q+  
Sbjct:   194 LTGYEPQDLIEKTLYHHVHGCDVFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSCA 253

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNV--LRRDNNQVPDSEEQSN 128
              + ++  +S+P  IV  + V++ +    L+   +QV  S+ Q +
Sbjct:   254 TVVHNSRSSRPHCIVSVNYVLTDIEYKELQLSLDQVSTSKSQDS 297


>UNIPROTKB|F1NRI5 [details] [associations]
            symbol:PER2 "Period circadian protein homolog 2"
            species:9031 "Gallus gallus" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447 PROSITE:PS50112
            SMART:SM00091 InterPro:IPR001610 GO:GO:0005634 GO:GO:0005737
            GO:GO:0007623 GO:GO:0000122 GO:GO:0004871 SMART:SM00086
            InterPro:IPR022728 Pfam:PF12114 GeneTree:ENSGT00510000046467
            IPI:IPI00579148 EMBL:AADN02024209 EMBL:AADN02024210
            Ensembl:ENSGALT00000008858 OMA:VEMKSSG ArrayExpress:F1NRI5
            Uniprot:F1NRI5
        Length = 1344

 Score = 114 (45.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 25/85 (29%), Positives = 45/85 (52%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY--YRFLTKGQQWIW 81
             A P++GYLP +++GT    + H +D   ++  H+ ++Q G     Y   RF T+   +I 
Sbjct:   400 AVPLLGYLPQDLIGTPVLVHLHPNDRPLMLAIHKKILQYGGQPFDYSPIRFCTRNGDYIT 459

Query:    82 LQTRFYITYHQWNSKPEFIVCTHRV 106
             + T +    + W+ K  FI+  H+V
Sbjct:   460 MDTSWSSFINPWSRKVSFIIGRHKV 484

 Score = 42 (19.8 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query:    96 KPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTI 138
             KPE +V      SY + +    ++ P  E +  + GP  +  +
Sbjct:   718 KPESVVSLTSQCSYSSTIVHVGDKKPQPELEMIEDGPSGAEVL 760


>UNIPROTKB|Q8QGQ8 [details] [associations]
            symbol:PER2 "Period circadian protein homolog 2"
            species:9031 "Gallus gallus" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0048511 "rhythmic process"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR000014 InterPro:IPR013655
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50113 SMART:SM00091
            InterPro:IPR001610 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
            GO:GO:0006351 GO:GO:0048511 GO:GO:0004871 SMART:SM00086
            eggNOG:NOG253593 HOGENOM:HOG000231111 HOVERGEN:HBG008167 KO:K02633
            InterPro:IPR022728 Pfam:PF12114 EMBL:AF246956 IPI:IPI00579148
            RefSeq:NP_989593.1 UniGene:Gga.39390 ProteinModelPortal:Q8QGQ8
            STRING:Q8QGQ8 PRIDE:Q8QGQ8 GeneID:374116 KEGG:gga:374116 CTD:8864
            InParanoid:Q8QGQ8 NextBio:20813632 Uniprot:Q8QGQ8
        Length = 1344

 Score = 114 (45.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 25/85 (29%), Positives = 45/85 (52%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY--YRFLTKGQQWIW 81
             A P++GYLP +++GT    + H +D   ++  H+ ++Q G     Y   RF T+   +I 
Sbjct:   400 AVPLLGYLPQDLIGTPVLVHLHPNDRPLMLAIHKKILQYGGQPFDYSPIRFCTRNGDYIT 459

Query:    82 LQTRFYITYHQWNSKPEFIVCTHRV 106
             + T +    + W+ K  FI+  H+V
Sbjct:   460 MDTSWSSFINPWSRKVSFIIGRHKV 484

 Score = 42 (19.8 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query:    96 KPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSNDTGPGDSNTI 138
             KPE +V      SY + +    ++ P  E +  + GP  +  +
Sbjct:   718 KPESVVSLTSQCSYSSTIVHVGDKKPQPELEMIEDGPSGAEVL 760


>MGI|MGI:98306 [details] [associations]
            symbol:Sim1 "single-minded homolog 1 (Drosophila)"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA;IDA]
            [GO:0007165 "signal transduction" evidence=IEA] [GO:0007275
            "multicellular organismal development" evidence=IEA] [GO:0007399
            "nervous system development" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0046982 "protein
            heterodimerization activity" evidence=IPI] [GO:0046983 "protein
            dimerization activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR010578 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF06621
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            PROSITE:PS51302 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            MGI:MGI:98306 GO:GO:0005634 GO:GO:0007399 GO:GO:0030154
            GO:GO:0006355 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0004871 SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GeneTree:ENSGT00700000104038 GO:GO:0001657 eggNOG:NOG310284
            HOGENOM:HOG000236298 HOVERGEN:HBG003936 KO:K09100 OrthoDB:EOG4QC14V
            CTD:6492 OMA:NSMPHIT EMBL:U40575 EMBL:AF038857 EMBL:AF038853
            EMBL:AF038854 EMBL:AF038856 EMBL:AF044913 EMBL:AF038855 EMBL:D79209
            EMBL:AB013491 IPI:IPI00117015 RefSeq:NP_035506.2 UniGene:Mm.4774
            ProteinModelPortal:Q61045 SMR:Q61045 IntAct:Q61045 STRING:Q61045
            PhosphoSite:Q61045 PRIDE:Q61045 DNASU:20464
            Ensembl:ENSMUST00000020071 GeneID:20464 KEGG:mmu:20464
            UCSC:uc007fal.1 InParanoid:Q61045 NextBio:298559 Bgee:Q61045
            CleanEx:MM_SIM1 Genevestigator:Q61045 GermOnline:ENSMUSG00000019913
            Uniprot:Q61045
        Length = 765

 Score = 127 (49.8 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D   +   H  L+ KG+ T+ YYRFL K   W+W+Q+  
Sbjct:   252 LTGYEPQDLIEKTLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKQGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIVCTHRVVS 108
              I ++  +S+P  IV  + V++
Sbjct:   312 TIVHNSRSSRPHCIVSVNYVLT 333


>RGD|1309949 [details] [associations]
            symbol:Sim1 "single-minded homolog 1 (Drosophila)" species:10116
            "Rattus norvegicus" [GO:0001657 "ureteric bud development"
            evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0008150
            "biological_process" evidence=ND] [GO:0046982 "protein
            heterodimerization activity" evidence=IEA;ISO] InterPro:IPR000014
            InterPro:IPR010578 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF06621
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888 PROSITE:PS51302
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 RGD:1309949
            GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0004871 SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GeneTree:ENSGT00700000104038 GO:GO:0001657 EMBL:CH474025 KO:K09100
            OrthoDB:EOG4QC14V CTD:6492 OMA:NSMPHIT IPI:IPI00361456
            RefSeq:NP_001101111.1 UniGene:Rn.165946 Ensembl:ENSRNOT00000057010
            GeneID:309888 KEGG:rno:309888 UCSC:RGD:1309949 NextBio:661438
            Uniprot:D3ZMU8
        Length = 765

 Score = 127 (49.8 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D   +   H  L+ KG+ T+ YYRFL K   W+W+Q+  
Sbjct:   252 LTGYEPQDLIEKTLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIVCTHRVVS 108
              I ++  +S+P  IV  + V++
Sbjct:   312 TIVHNSRSSRPHCIVSVNYVLT 333


>UNIPROTKB|E1C5G3 [details] [associations]
            symbol:SIM1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0001657 "ureteric bud development" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0046982 "protein heterodimerization
            activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR010578
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF06621 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50888 PROSITE:PS51302 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086 Gene3D:4.10.280.10
            SUPFAM:SSF47459 GeneTree:ENSGT00700000104038 EMBL:AADN02002234
            KO:K09100 CTD:6492 OMA:NSMPHIT EMBL:AADN02002235 EMBL:AADN02002236
            EMBL:AADN02002237 IPI:IPI00821218 RefSeq:XP_419817.2
            UniGene:Gga.31324 Ensembl:ENSGALT00000024939 GeneID:396129
            KEGG:gga:396129 NextBio:20816186 Uniprot:E1C5G3
        Length = 766

 Score = 127 (49.8 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D   +   H  L+ KG+ T+ YYRFL K   W+W+Q+  
Sbjct:   252 LTGYEPQDLIEKTLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIVCTHRVVS 108
              I ++  +S+P  IV  + V++
Sbjct:   312 TIVHNSRSSRPHCIVSVNYVLT 333


>UNIPROTKB|F1N178 [details] [associations]
            symbol:SIM1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001657
            "ureteric bud development" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR010578 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF06621
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888 PROSITE:PS51302
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0004871
            SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GeneTree:ENSGT00700000104038 GO:GO:0001657 OMA:NSMPHIT
            EMBL:DAAA02026200 EMBL:DAAA02026201 IPI:IPI00999630
            UniGene:Bt.106531 Ensembl:ENSBTAT00000002960 NextBio:20877091
            Uniprot:F1N178
        Length = 766

 Score = 127 (49.8 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D   +   H  L+ KG+ T+ YYRFL K   W+W+Q+  
Sbjct:   252 LTGYEPQDLIEKTLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIVCTHRVVS 108
              I ++  +S+P  IV  + V++
Sbjct:   312 TIVHNSRSSRPHCIVSVNYVLT 333


>UNIPROTKB|E2QWV9 [details] [associations]
            symbol:SIM1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001657
            "ureteric bud development" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR010578 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF06621
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888 PROSITE:PS51302
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0004871
            SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GeneTree:ENSGT00700000104038 GO:GO:0001657 KO:K09100 CTD:6492
            OMA:NSMPHIT EMBL:AAEX03008562 RefSeq:XP_539058.2
            ProteinModelPortal:E2QWV9 Ensembl:ENSCAFT00000005680 GeneID:481937
            KEGG:cfa:481937 NextBio:20856645 Uniprot:E2QWV9
        Length = 766

 Score = 127 (49.8 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D   +   H  L+ KG+ T+ YYRFL K   W+W+Q+  
Sbjct:   252 LTGYEPQDLIEKTLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIVCTHRVVS 108
              I ++  +S+P  IV  + V++
Sbjct:   312 TIVHNSRSSRPHCIVSVNYVLT 333


>UNIPROTKB|P81133 [details] [associations]
            symbol:SIM1 "Single-minded homolog 1" species:9606 "Homo
            sapiens" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0007399 "nervous system development" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0001657 "ureteric bud
            development" evidence=IEA] [GO:0046982 "protein heterodimerization
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR010578 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF06621 Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 PROSITE:PS51302 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005634 GO:GO:0007399 GO:GO:0030154
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0004871
            SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0001657
            EMBL:Z86062 eggNOG:NOG310284 HOGENOM:HOG000236298
            HOVERGEN:HBG003936 KO:K09100 OrthoDB:EOG4QC14V EMBL:U70212
            EMBL:AL121948 IPI:IPI00292234 RefSeq:NP_005059.2 UniGene:Hs.520293
            ProteinModelPortal:P81133 SMR:P81133 STRING:P81133
            PhosphoSite:P81133 DMDM:109940166 PRIDE:P81133 DNASU:6492
            Ensembl:ENST00000262901 Ensembl:ENST00000369208 GeneID:6492
            KEGG:hsa:6492 UCSC:uc003pqj.4 CTD:6492 GeneCards:GC06M100882
            HGNC:HGNC:10882 HPA:HPA002084 HPA:HPA024385 MIM:603128
            neXtProt:NX_P81133 Orphanet:171829 PharmGKB:PA35782
            InParanoid:P81133 OMA:NSMPHIT PhylomeDB:P81133 ChiTaRS:SIM1
            GenomeRNAi:6492 NextBio:25231 Bgee:P81133 CleanEx:HS_SIM1
            Genevestigator:P81133 GermOnline:ENSG00000112246 Uniprot:P81133
        Length = 766

 Score = 127 (49.8 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D   +   H  L+ KG+ T+ YYRFL K   W+W+Q+  
Sbjct:   252 LTGYEPQDLIEKTLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIVCTHRVVS 108
              I ++  +S+P  IV  + V++
Sbjct:   312 TIVHNSRSSRPHCIVSVNYVLT 333


>UNIPROTKB|F8WAP6 [details] [associations]
            symbol:ARNT "Aryl hydrocarbon receptor nuclear
            translocator" species:9606 "Homo sapiens" [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL355860 HGNC:HGNC:700
            ChiTaRS:ARNT IPI:IPI00965109 ProteinModelPortal:F8WAP6 SMR:F8WAP6
            Ensembl:ENST00000354396 UCSC:uc009wmc.2 ArrayExpress:F8WAP6
            Bgee:F8WAP6 Uniprot:F8WAP6
        Length = 787

 Score = 127 (49.8 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 22/78 (28%), Positives = 48/78 (61%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF +K Q+W+W++T  
Sbjct:   384 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSS 443

Query:    87 YITYHQWNSKPEFIVCTH 104
             +   + ++ + E+I+CT+
Sbjct:   444 FTFQNPYSDEIEYIICTN 461


>UNIPROTKB|P27540 [details] [associations]
            symbol:ARNT "Aryl hydrocarbon receptor nuclear
            translocator" species:9606 "Homo sapiens" [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0001892 "embryonic
            placenta development" evidence=IEA] [GO:0003713 "transcription
            coactivator activity" evidence=IEA] [GO:0004874 "aryl hydrocarbon
            receptor activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0033235 "positive regulation of protein sumoylation"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0033554
            "cellular response to stress" evidence=TAS] [GO:0061418 "regulation
            of transcription from RNA polymerase II promoter in response to
            hypoxia" evidence=TAS] [GO:0071456 "cellular response to hypoxia"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008134 "transcription factor binding" evidence=IPI]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IDA]
            [GO:0042789 "mRNA transcription from RNA polymerase II promoter"
            evidence=IC] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0017162 "aryl hydrocarbon receptor binding"
            evidence=IPI] [GO:0046982 "protein heterodimerization activity"
            evidence=IPI] [GO:0001666 "response to hypoxia" evidence=IDA]
            [GO:0001938 "positive regulation of endothelial cell proliferation"
            evidence=IC] [GO:0005634 "nucleus" evidence=IDA] [GO:0010575
            "positive regulation vascular endothelial growth factor production"
            evidence=IDA] [GO:0030949 "positive regulation of vascular
            endothelial growth factor receptor signaling pathway" evidence=IC]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0043619 "regulation of transcription from RNA
            polymerase II promoter in response to oxidative stress"
            evidence=IDA] [GO:0045648 "positive regulation of erythrocyte
            differentiation" evidence=IC] [GO:0045821 "positive regulation of
            glycolysis" evidence=IC] [GO:0046886 "positive regulation of
            hormone biosynthetic process" evidence=IDA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            Reactome:REACT_120956 GO:GO:0005737 GO:GO:0045893 GO:GO:0005654
            GO:GO:0030154 GO:GO:0001938 Pathway_Interaction_DB:hif1_tfpathway
            GO:GO:0043565 GO:GO:0045944 GO:GO:0010575 GO:GO:0003700
            GO:GO:0045821 GO:GO:0005667 GO:GO:0003713 GO:GO:0045648
            SMART:SM00086 TIGRFAMs:TIGR00229 eggNOG:NOG293303
            Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0033235 GO:GO:0004874
            Pathway_Interaction_DB:vegfr1_2_pathway EMBL:CH471121 GO:GO:0030949
            HOGENOM:HOG000234380 HOVERGEN:HBG000164 CTD:405 KO:K09097
            OrthoDB:EOG4R7V9H EMBL:M69238 EMBL:Y18859 EMBL:AJ251863
            EMBL:AJ404851 EMBL:AJ404852 EMBL:AJ404853 EMBL:AJ404854
            EMBL:AK290177 EMBL:AK293027 EMBL:AL834279 EMBL:AY430083
            EMBL:AL355860 IPI:IPI00218287 IPI:IPI00514749 IPI:IPI00922490
            PIR:I59550 RefSeq:NP_001184254.1 RefSeq:NP_001659.1
            RefSeq:NP_848514.1 UniGene:Hs.632446 PDB:1D7G PDB:1X0O PDB:2A24
            PDB:2ARN PDB:2B02 PDB:2HV1 PDB:2K7S PDB:3F1N PDB:3F1O PDB:3F1P
            PDB:3H7W PDB:3H82 PDB:4H6J PDBsum:1D7G PDBsum:1X0O PDBsum:2A24
            PDBsum:2ARN PDBsum:2B02 PDBsum:2HV1 PDBsum:2K7S PDBsum:3F1N
            PDBsum:3F1O PDBsum:3F1P PDBsum:3H7W PDBsum:3H82 PDBsum:4H6J
            ProteinModelPortal:P27540 SMR:P27540 DIP:DIP-30886N IntAct:P27540
            MINT:MINT-1196758 STRING:P27540 PhosphoSite:P27540 DMDM:114163
            PaxDb:P27540 PRIDE:P27540 DNASU:405 Ensembl:ENST00000358595
            Ensembl:ENST00000505755 Ensembl:ENST00000515192 GeneID:405
            KEGG:hsa:405 UCSC:uc001evr.2 UCSC:uc001evs.2 UCSC:uc009wmb.2
            GeneCards:GC01M150782 HGNC:HGNC:700 HPA:CAB004318 HPA:HPA001759
            MIM:126110 neXtProt:NX_P27540 PharmGKB:PA24994 OMA:AGQGSKF
            Pathway_Interaction_DB:hif1apathway ChEMBL:CHEMBL5618 ChiTaRS:ARNT
            EvolutionaryTrace:P27540 GenomeRNAi:405 NextBio:1693
            ArrayExpress:P27540 Bgee:P27540 CleanEx:HS_ARNT
            Genevestigator:P27540 GermOnline:ENSG00000143437 GO:GO:0001892
            GO:GO:0042789 GO:GO:0046886 GO:GO:0061418 GO:GO:0043619
            Uniprot:P27540
        Length = 789

 Score = 127 (49.8 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 22/78 (28%), Positives = 48/78 (61%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF +K Q+W+W++T  
Sbjct:   384 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSS 443

Query:    87 YITYHQWNSKPEFIVCTH 104
             +   + ++ + E+I+CT+
Sbjct:   444 FTFQNPYSDEIEYIICTN 461


>MGI|MGI:98307 [details] [associations]
            symbol:Sim2 "single-minded homolog 2 (Drosophila)"
            species:10090 "Mus musculus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IGI]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0007275 "multicellular organismal
            development" evidence=IEA] [GO:0007399 "nervous system development"
            evidence=IEA] [GO:0009880 "embryonic pattern specification"
            evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0030324 "lung development" evidence=IMP] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0046982 "protein heterodimerization activity" evidence=IPI]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR010578 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF06621 Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 PROSITE:PS51302 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 MGI:MGI:98307 GO:GO:0005634 GO:GO:0007399
            GO:GO:0030154 GO:GO:0003677 GO:GO:0030324 GO:GO:0003700
            GO:GO:0006351 GO:GO:0000122 GO:GO:0004871 SMART:SM00086
            GeneTree:ENSGT00700000104038 GO:GO:0009880 eggNOG:NOG310284
            HOGENOM:HOG000236298 HOVERGEN:HBG003936 KO:K09100 CTD:6493
            OMA:KKPMLPA OrthoDB:EOG43N7CB EMBL:U42554 EMBL:D63383 EMBL:U40576
            EMBL:AF023873 EMBL:AF023864 EMBL:AF023865 EMBL:AF023869
            EMBL:AF023871 EMBL:AF023870 EMBL:AF023868 EMBL:AF023867
            EMBL:AF023866 EMBL:AF023872 EMBL:D64135 IPI:IPI00117078
            RefSeq:NP_035507.2 UniGene:Mm.4775 ProteinModelPortal:Q61079
            SMR:Q61079 IntAct:Q61079 STRING:Q61079 PhosphoSite:Q61079
            PRIDE:Q61079 Ensembl:ENSMUST00000072182 GeneID:20465 KEGG:mmu:20465
            UCSC:uc008aae.1 InParanoid:Q61079 NextBio:298563 Bgee:Q61079
            CleanEx:MM_SIM2 Genevestigator:Q61079 Uniprot:Q61079
        Length = 657

 Score = 126 (49.4 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 30/104 (28%), Positives = 56/104 (53%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D   +   H  L+ KG+ T+ YYR L+K   W+W+Q+  
Sbjct:   252 LTGYEPQDLIEKTLYHHVHGCDTFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNV--LRRDNNQVPDSEEQSN 128
              + ++  +S+P  IV  + V++ V    L+   +QV  S+ Q +
Sbjct:   312 TVVHNSRSSRPHCIVSVNYVLTDVEYKELQLSLDQVSTSKSQES 355


>UNIPROTKB|H9L0U2 [details] [associations]
            symbol:ARNT "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005667 GO:GO:0004871 SMART:SM00086
            TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10
            SUPFAM:SSF47459 EMBL:AADN02010491 EMBL:AADN02010492
            EMBL:AADN02010493 Ensembl:ENSGALT00000029129 Uniprot:H9L0U2
        Length = 788

 Score = 126 (49.4 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 22/78 (28%), Positives = 47/78 (60%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG    D+ H +D   +    + +++ KG+  S  +RF +K ++W+W++T  
Sbjct:   387 VGYQPQELLGKDIVDFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSS 446

Query:    87 YITYHQWNSKPEFIVCTH 104
             +   + ++ + E+I+CT+
Sbjct:   447 FTFQNPYSDEIEYIICTN 464


>UNIPROTKB|Q98SN3 [details] [associations]
            symbol:ARNT "Aryl hydrocarbon receptor nuclear
            translocator" species:9031 "Gallus gallus" [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0001666 "response
            to hypoxia" evidence=IEA] [GO:0001892 "embryonic placenta
            development" evidence=IEA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0003713 "transcription coactivator
            activity" evidence=IEA] [GO:0004874 "aryl hydrocarbon receptor
            activity" evidence=IEA] [GO:0010575 "positive regulation vascular
            endothelial growth factor production" evidence=IEA] [GO:0017162
            "aryl hydrocarbon receptor binding" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0033235 "positive regulation of
            protein sumoylation" evidence=IEA] [GO:0043565 "sequence-specific
            DNA binding" evidence=IEA] [GO:0043619 "regulation of transcription
            from RNA polymerase II promoter in response to oxidative stress"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0046886
            "positive regulation of hormone biosynthetic process" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
            GO:GO:0043565 GO:GO:0001666 GO:GO:0045944 GO:GO:0010575
            GO:GO:0005667 GO:GO:0003705 GO:GO:0003713 SMART:SM00086
            TIGRFAMs:TIGR00229 eggNOG:NOG293303 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0033235 GO:GO:0004874
            HOGENOM:HOG000234380 HOVERGEN:HBG000164 CTD:405 KO:K09097
            OMA:AGQGSKF GO:GO:0046886 GO:GO:0043619 HSSP:P22415
            EMBL:AADN02010491 EMBL:AADN02010492 EMBL:AADN02010493 EMBL:AF348088
            IPI:IPI00581095 PIR:JC7635 RefSeq:NP_989531.1 UniGene:Gga.8458
            ProteinModelPortal:Q98SN3 SMR:Q98SN3 STRING:Q98SN3
            Ensembl:ENSGALT00000001095 GeneID:374026 KEGG:gga:374026
            InParanoid:Q98SN3 NextBio:20813553 Uniprot:Q98SN3
        Length = 805

 Score = 126 (49.4 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 22/78 (28%), Positives = 47/78 (60%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG    D+ H +D   +    + +++ KG+  S  +RF +K ++W+W++T  
Sbjct:   405 VGYQPQELLGKDIVDFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSS 464

Query:    87 YITYHQWNSKPEFIVCTH 104
             +   + ++ + E+I+CT+
Sbjct:   465 FTFQNPYSDEIEYIICTN 482


>UNIPROTKB|E2RDR2 [details] [associations]
            symbol:SIM2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR010578 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF06621
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888 PROSITE:PS51302
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0004871
            SMART:SM00086 GeneTree:ENSGT00700000104038 OMA:KKPMLPA
            EMBL:AAEX03016522 Ensembl:ENSCAFT00000015386 Uniprot:E2RDR2
        Length = 562

 Score = 124 (48.7 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 29/104 (27%), Positives = 56/104 (53%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D+  +   H  L+ KG+ T+ YYR L+K   W+W+Q+  
Sbjct:   252 LTGYEPQDLIEKTLYHHVHGCDVFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNV--LRRDNNQVPDSEEQSN 128
              I ++  +S+P  IV  + V++ +    L+   +Q   S+ Q +
Sbjct:   312 TIVHNSRSSRPHCIVSVNYVLTDIEYKELQLSLDQASTSKSQDS 355


>MGI|MGI:88071 [details] [associations]
            symbol:Arnt "aryl hydrocarbon receptor nuclear translocator"
            species:10090 "Mus musculus" [GO:0000989 "transcription factor
            binding transcription factor activity" evidence=IPI] [GO:0001666
            "response to hypoxia" evidence=ISO;IDA] [GO:0001892 "embryonic
            placenta development" evidence=IMP] [GO:0003677 "DNA binding"
            evidence=IGI] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=TAS] [GO:0003713
            "transcription coactivator activity" evidence=IDA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0004874 "aryl
            hydrocarbon receptor activity" evidence=IMP] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005667 "transcription factor complex" evidence=IDA;TAS]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=TAS]
            [GO:0007165 "signal transduction" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=ISO] [GO:0009636 "response
            to toxic substance" evidence=TAS] [GO:0010575 "positive regulation
            vascular endothelial growth factor production" evidence=ISO]
            [GO:0017162 "aryl hydrocarbon receptor binding" evidence=ISO]
            [GO:0030154 "cell differentiation" evidence=IMP] [GO:0030522
            "intracellular receptor mediated signaling pathway" evidence=IMP]
            [GO:0033235 "positive regulation of protein sumoylation"
            evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISO] [GO:0043619 "regulation of transcription from RNA
            polymerase II promoter in response to oxidative stress"
            evidence=ISO] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISO;IDA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IGI]
            [GO:0046886 "positive regulation of hormone biosynthetic process"
            evidence=ISO] [GO:0046982 "protein heterodimerization activity"
            evidence=ISO;IPI] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:2001141 "regulation of RNA biosynthetic process"
            evidence=IPI] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 MGI:MGI:88071 GO:GO:0005737
            GO:GO:0030154 EMBL:CH466620 GO:GO:0003677 GO:GO:0009636
            GO:GO:0043565 GO:GO:0001666 GO:GO:0045944 GO:GO:0010575
            GO:GO:0003700 GO:GO:0005667 GO:GO:0003705 GO:GO:0003713
            SMART:SM00086 TIGRFAMs:TIGR00229 eggNOG:NOG293303
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GO:GO:0033235 GO:GO:0004874 HOGENOM:HOG000234380 HOVERGEN:HBG000164
            CTD:405 KO:K09097 OrthoDB:EOG4R7V9H OMA:AGQGSKF ChiTaRS:ARNT
            GO:GO:0001892 GO:GO:0046886 GO:GO:0043619 EMBL:U10325 EMBL:U14333
            EMBL:AK153355 EMBL:BC012870 IPI:IPI00627004 IPI:IPI00875488
            PIR:A55448 PIR:A56241 RefSeq:NP_001032826.1 UniGene:Mm.250265
            ProteinModelPortal:P53762 SMR:P53762 DIP:DIP-280N IntAct:P53762
            STRING:P53762 PhosphoSite:P53762 PRIDE:P53762
            Ensembl:ENSMUST00000102749 GeneID:11863 KEGG:mmu:11863
            InParanoid:Q921F3 NextBio:279865 Bgee:P53762 CleanEx:MM_ARNT
            Genevestigator:P53762 GermOnline:ENSMUSG00000015522 Uniprot:P53762
        Length = 791

 Score = 124 (48.7 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 26/100 (26%), Positives = 57/100 (57%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF +K ++W+W++T  
Sbjct:   384 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKTREWLWMRTSS 443

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRD--NNQVPDSE 124
             +   + ++ + E+I+CT+  V   +   R   +N +P S+
Sbjct:   444 FTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIPRSQ 483


>UNIPROTKB|F1RYR5 [details] [associations]
            symbol:SIM1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001657
            "ureteric bud development" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR010578 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF06621
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888 PROSITE:PS51302
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0004871
            SMART:SM00086 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GeneTree:ENSGT00700000104038 GO:GO:0001657 OMA:NSMPHIT
            EMBL:CU024902 Ensembl:ENSSSCT00000004814 Uniprot:F1RYR5
        Length = 767

 Score = 123 (48.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + GY P +++  + Y + H  D   +   H  L+ KG+ T+ YYRFL K   W+W+Q+  
Sbjct:   252 LTGYEPQDLIEKTLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYA 311

Query:    87 YITYHQWNSKPEFIV 101
              I ++  +S+P  IV
Sbjct:   312 TIVHNSRSSRPHCIV 326


>UNIPROTKB|F6V057 [details] [associations]
            symbol:ARNT "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005667 "transcription factor
            complex" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 Ensembl:ENSCAFT00000019492
            EMBL:AAEX03011051 Uniprot:F6V057
        Length = 781

 Score = 123 (48.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 21/78 (26%), Positives = 48/78 (61%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF +K ++W+W++T  
Sbjct:   375 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSS 434

Query:    87 YITYHQWNSKPEFIVCTH 104
             +   + ++ + E+I+CT+
Sbjct:   435 FTFQNPYSDEIEYIICTN 452


>UNIPROTKB|F1SS94 [details] [associations]
            symbol:ARNT "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 OMA:AGQGSKF EMBL:CU463875
            Ensembl:ENSSSCT00000007282 Uniprot:F1SS94
        Length = 781

 Score = 123 (48.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 21/78 (26%), Positives = 48/78 (61%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF +K ++W+W++T  
Sbjct:   375 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSS 434

Query:    87 YITYHQWNSKPEFIVCTH 104
             +   + ++ + E+I+CT+
Sbjct:   435 FTFQNPYSDEIEYIICTN 452


>UNIPROTKB|F1MYI1 [details] [associations]
            symbol:ARNT "Aryl hydrocarbon receptor nuclear
            translocator" species:9913 "Bos taurus" [GO:0046982 "protein
            heterodimerization activity" evidence=IEA] [GO:0046886 "positive
            regulation of hormone biosynthetic process" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0043619 "regulation of
            transcription from RNA polymerase II promoter in response to
            oxidative stress" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0033235 "positive regulation of protein
            sumoylation" evidence=IEA] [GO:0030154 "cell differentiation"
            evidence=IEA] [GO:0017162 "aryl hydrocarbon receptor binding"
            evidence=IEA] [GO:0010575 "positive regulation vascular endothelial
            growth factor production" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0004874 "aryl hydrocarbon receptor activity"
            evidence=IEA] [GO:0003713 "transcription coactivator activity"
            evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0001892 "embryonic placenta development"
            evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
            [GO:0005667 "transcription factor complex" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005737
            GO:GO:0030154 GO:GO:0043565 GO:GO:0001666 GO:GO:0045944
            GO:GO:0010575 GO:GO:0005667 GO:GO:0003705 GO:GO:0003713
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0033235 GO:GO:0004874
            IPI:IPI00701584 OMA:AGQGSKF GO:GO:0001892 GO:GO:0046886
            GO:GO:0043619 EMBL:DAAA02007256 Ensembl:ENSBTAT00000028023
            ArrayExpress:F1MYI1 Uniprot:F1MYI1
        Length = 782

 Score = 123 (48.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 21/78 (26%), Positives = 48/78 (61%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF +K ++W+W++T  
Sbjct:   376 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSS 435

Query:    87 YITYHQWNSKPEFIVCTH 104
             +   + ++ + E+I+CT+
Sbjct:   436 FTFQNPYSDEIEYIICTN 453


>UNIPROTKB|K7GNG1 [details] [associations]
            symbol:ARNT "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            EMBL:CU463875 Ensembl:ENSSSCT00000034834 Uniprot:K7GNG1
        Length = 790

 Score = 123 (48.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 21/78 (26%), Positives = 48/78 (61%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF +K ++W+W++T  
Sbjct:   384 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSS 443

Query:    87 YITYHQWNSKPEFIVCTH 104
             +   + ++ + E+I+CT+
Sbjct:   444 FTFQNPYSDEIEYIICTN 461


>UNIPROTKB|E2QT96 [details] [associations]
            symbol:ARNT "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005667 "transcription factor
            complex" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 Gene3D:4.10.280.10 SUPFAM:SSF47459
            Ensembl:ENSCAFT00000019492 Uniprot:E2QT96
        Length = 791

 Score = 123 (48.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 21/78 (26%), Positives = 48/78 (61%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF +K ++W+W++T  
Sbjct:   384 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSS 443

Query:    87 YITYHQWNSKPEFIVCTH 104
             +   + ++ + E+I+CT+
Sbjct:   444 FTFQNPYSDEIEYIICTN 461


>UNIPROTKB|J9P204 [details] [associations]
            symbol:ARNT "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005667 "transcription factor
            complex" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            Gene3D:4.10.280.10 SUPFAM:SSF47459 OMA:AGQGSKF EMBL:AAEX03011051
            Ensembl:ENSCAFT00000047223 Uniprot:J9P204
        Length = 791

 Score = 123 (48.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 21/78 (26%), Positives = 48/78 (61%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF +K ++W+W++T  
Sbjct:   385 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSS 444

Query:    87 YITYHQWNSKPEFIVCTH 104
             +   + ++ + E+I+CT+
Sbjct:   445 FTFQNPYSDEIEYIICTN 462


>UNIPROTKB|P79832 [details] [associations]
            symbol:arnt "Aryl hydrocarbon receptor nuclear
            translocator" species:8022 "Oncorhynchus mykiss" [GO:0003714
            "transcription corepressor activity" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0009967 "positive regulation of signal
            transduction" evidence=IDA] [GO:0009968 "negative regulation of
            signal transduction" evidence=IDA] [GO:0017162 "aryl hydrocarbon
            receptor binding" evidence=IDA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0046982 "protein heterodimerization activity" evidence=IPI]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
            GO:GO:0045893 GO:GO:0006355 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005667 GO:GO:0004871 GO:GO:0009967
            SMART:SM00086 TIGRFAMs:TIGR00229 Gene3D:4.10.280.10 SUPFAM:SSF47459
            HOVERGEN:HBG000164 GO:GO:0017162 CTD:405 EMBL:U73840 EMBL:U73841
            RefSeq:NP_001118182.1 UniGene:Omy.14654 ProteinModelPortal:P79832
            SMR:P79832 IntAct:P79832 GeneID:100136759 GO:GO:0009968
            Uniprot:P79832
        Length = 723

 Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 22/78 (28%), Positives = 48/78 (61%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  +  H +D + +    + +++ KG+  S  +RFL+K + W+W++T  
Sbjct:   360 VGYQPQELLGKNILELAHPEDQELLRDSFQQVVKLKGQVLSVMFRFLSKTRDWLWIRTSS 419

Query:    87 YITYHQWNSKPEFIVCTH 104
             +   + ++ + E+I+CT+
Sbjct:   420 FTFQNPFSEEIEYIICTN 437


>UNIPROTKB|F1MYL2 [details] [associations]
            symbol:ARNT2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR013655
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 SMART:SM00091
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0003700 GO:GO:0005667
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 OMA:VCMDMSG EMBL:DAAA02052316
            EMBL:DAAA02052317 EMBL:DAAA02052318 EMBL:DAAA02052319
            IPI:IPI00715386 Ensembl:ENSBTAT00000016391 Uniprot:F1MYL2
        Length = 513

 Score = 120 (47.3 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 22/79 (27%), Positives = 47/79 (59%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTR 85
             +IGY P ++LG    ++ H +D   +    + +++ KG+  S  YRF TK ++W+ ++T 
Sbjct:   153 VIGYQPQDLLGKDILEFCHSEDQSHLRESFQQVVKLKGQVLSVMYRFRTKNREWVLIRTS 212

Query:    86 FYITYHQWNSKPEFIVCTH 104
              +   + ++ + E+I+CT+
Sbjct:   213 SFTFQNPYSDEIEYIICTN 231


>ZFIN|ZDB-GENE-050922-1 [details] [associations]
            symbol:ahr1b "aryl hydrocarbon receptor 1b"
            species:7955 "Danio rerio" [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0007165 "signal transduction"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0042221 "response to chemical stimulus"
            evidence=IDA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 ZFIN:ZDB-GENE-050922-1
            GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0042221
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086 Gene3D:4.10.280.10
            GeneTree:ENSGT00700000104038 HOVERGEN:HBG007313 KO:K09093
            EMBL:BX908726 EMBL:CR394522 EMBL:DQ016494 IPI:IPI00498003
            RefSeq:NP_001019987.1 UniGene:Dr.93042 STRING:Q4U3K9
            Ensembl:ENSDART00000028787 GeneID:554265 KEGG:dre:554265 CTD:554265
            InParanoid:Q4U3K9 OMA:HDNSKAT NextBio:20880738 Uniprot:Q4U3K9
        Length = 940

 Score = 123 (48.4 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query:    27 IIGYLPFEV-LGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             ++GY   E+ +  SGY + H  D+      H  +++ GE     +R LTK  +W W+Q  
Sbjct:   304 VLGYTEAELRVRGSGYQFIHAADMLYCAENHVRMIKTGESGLTVFRLLTKDNRWKWVQAN 363

Query:    86 FYITYHQWNSKPEFIVCTHR 105
               + Y   N KP++I+ T R
Sbjct:   364 ARLVYK--NGKPDYIIATQR 381


>UNIPROTKB|Q9BE97 [details] [associations]
            symbol:ARNT "Aryl hydrocarbon receptor nuclear
            translocator" species:9913 "Bos taurus" [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            eggNOG:NOG293303 Gene3D:4.10.280.10 SUPFAM:SSF47459
            HOGENOM:HOG000234380 HOVERGEN:HBG000164 HSSP:P27540 EMBL:AB053954
            IPI:IPI00701584 RefSeq:NP_776418.1 UniGene:Bt.87256
            ProteinModelPortal:Q9BE97 SMR:Q9BE97 STRING:Q9BE97 PRIDE:Q9BE97
            GeneID:281010 KEGG:bta:281010 CTD:405 InParanoid:Q9BE97 KO:K09097
            OrthoDB:EOG4R7V9H NextBio:20805105 Uniprot:Q9BE97
        Length = 790

 Score = 122 (48.0 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 21/78 (26%), Positives = 48/78 (61%)

Query:    28 IGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTRF 86
             +GY P E+LG +  ++ H +D   +    + +++ KG+  S  +RF +K ++W+W++T  
Sbjct:   384 VGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWVRTSS 443

Query:    87 YITYHQWNSKPEFIVCTH 104
             +   + ++ + E+I+CT+
Sbjct:   444 FTFQNPYSDEIEYIICTN 461


>FB|FBgn0015542 [details] [associations]
            symbol:sima "similar" species:7227 "Drosophila melanogaster"
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS;NAS] [GO:0071456 "cellular response to hypoxia"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IMP] [GO:0005634 "nucleus" evidence=NAS;IDA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0004871 "signal transducer activity" evidence=IEA] [GO:0007165
            "signal transduction" evidence=IEA] [GO:0030308 "negative
            regulation of cell growth" evidence=IMP] [GO:0032869 "cellular
            response to insulin stimulus" evidence=IDA] [GO:0006974 "response
            to DNA damage stimulus" evidence=IMP] InterPro:IPR000014
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            EMBL:AE014297 GO:GO:0005634 GO:GO:0005737 GO:GO:0030308
            GO:GO:0032869 GO:GO:0003677 GO:GO:0045944 GO:GO:0071456
            GO:GO:0006351 GO:GO:0006974 GO:GO:0004871 SMART:SM00086
            eggNOG:NOG289264 GeneTree:ENSGT00650000093281 KO:K08268 EMBL:U43090
            PIR:JC4851 RefSeq:NP_524584.2 UniGene:Dm.6953
            ProteinModelPortal:Q24167 SMR:Q24167 DIP:DIP-21002N IntAct:Q24167
            MINT:MINT-304504 STRING:Q24167 PaxDb:Q24167
            EnsemblMetazoa:FBtr0085565 GeneID:43580 KEGG:dme:Dmel_CG7951
            CTD:43580 FlyBase:FBgn0015542 InParanoid:Q24167 OMA:PGPRTIT
            OrthoDB:EOG4JQ2CF PhylomeDB:Q24167 ChiTaRS:sima GenomeRNAi:43580
            NextBio:834672 Bgee:Q24167 GermOnline:CG7951 Uniprot:Q24167
        Length = 1507

 Score = 125 (49.1 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 28/94 (29%), Positives = 51/94 (54%)

Query:    15 MNSTIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLT 74
             M  T  D     ++GY P ++L TS +   H  D + ++   ++++ KG+G +  YRFL 
Sbjct:   329 MRFTYVDDKMHDLLGYSPKDLLDTSLFSCQHGADSERLMATFKSVLSKGQGETSRYRFLG 388

Query:    75 KGQQWIWLQTRFYITYHQWNSKPEFIVCTHRVVS 108
             K   + W+ ++  I Y +   KP+ +VC + V+S
Sbjct:   389 KYGGYCWILSQATIVYDKL--KPQSVVCVNYVIS 420


>ZFIN|ZDB-GENE-060503-934 [details] [associations]
            symbol:npas3b "neuronal PAS domain protein 3b"
            species:7955 "Danio rerio" [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 ZFIN:ZDB-GENE-060503-934 GO:GO:0005634
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 SUPFAM:SSF47459
            GeneTree:ENSGT00700000104038 EMBL:BX296539 IPI:IPI00612477
            Ensembl:ENSDART00000101511 ArrayExpress:F1Q754 Bgee:F1Q754
            Uniprot:F1Q754
        Length = 770

 Score = 120 (47.3 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 27/94 (28%), Positives = 53/94 (56%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P EV+G + Y + H +DLD+V   HE L++KG+  + YYR+L +   ++W+Q+   ++ +
Sbjct:   335 PAEVVGHTCYHFIHAEDLDTVRQSHEDLLRKGQVVTGYYRWLQRRGGYLWIQSCATVSIN 394

Query:    92 QWNSKPEFIVCTHRVVSYVNV--LRRDNNQVPDS 123
                     ++  + V+S   +  +  D  Q+P+S
Sbjct:   395 HKAPHERNVIWVNYVLSRPELADMPLDLLQLPES 428


>ZFIN|ZDB-GENE-990714-16 [details] [associations]
            symbol:ahr2 "aryl hydrocarbon receptor 2"
            species:7955 "Danio rerio" [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
            activity" evidence=IEA] [GO:0007165 "signal transduction"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
            [GO:0043565 "sequence-specific DNA binding" evidence=IPI]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IPI] [GO:0009410 "response to xenobiotic stimulus"
            evidence=IMP;IDA;IPI] [GO:0042221 "response to chemical stimulus"
            evidence=IGI;IDA;IMP] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0009636 "response to toxic substance" evidence=IMP] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 ZFIN:ZDB-GENE-990714-16 GO:GO:0005634
            GO:GO:0005737 GO:GO:0009636 GO:GO:0043565 GO:GO:0045944
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086 GO:GO:0009410
            Gene3D:4.10.280.10 EMBL:AF063446 IPI:IPI00491298 RefSeq:NP_571339.1
            UniGene:Dr.79593 ProteinModelPortal:Q9YGV3 STRING:Q9YGV3
            GeneID:30517 KEGG:dre:30517 CTD:30517 HOVERGEN:HBG105620
            InParanoid:Q9YGV3 NextBio:20806903 ArrayExpress:Q9YGV3
            Uniprot:Q9YGV3
        Length = 1027

 Score = 121 (47.7 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 24/83 (28%), Positives = 42/83 (50%)

Query:    27 IIGYLPFEV-LGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTR 85
             ++GY   E+ +  SGY + H  D+      H  +++ GE     +R L+KG  WIW+Q  
Sbjct:   312 VLGYTEIELCMRGSGYQFIHAADMMYCADNHIRMIKTGESGLTVFRLLSKGGTWIWVQAN 371

Query:    86 FYITYHQWNSKPEFIVCTHRVVS 108
               + Y     +P+FI+   R ++
Sbjct:   372 ARLVYKA--GRPDFIIARQRALT 392


>ZFIN|ZDB-GENE-010803-1 [details] [associations]
            symbol:sim2 "single-minded homolog 2 (Drosophila)"
            species:7955 "Danio rerio" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0004871 "signal transducer activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0007165 "signal transduction"
            evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 ZFIN:ZDB-GENE-010803-1 GO:GO:0005737
            GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229 HSSP:Q99814
            eggNOG:NOG310284 OrthoDB:EOG4QC14V CTD:6493 EMBL:BC065360
            EMBL:AF363019 IPI:IPI00487129 RefSeq:NP_571911.1 UniGene:Dr.15420
            GeneID:114450 KEGG:dre:114450 InParanoid:Q8UVV3 OMA:ANIEPEM
            NextBio:20796935 Uniprot:Q8UVV3
        Length = 585

 Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             + G+ P +++  + Y + H  D+  +   H  L+ KG+ T+ YYR L+K   W+W+Q+  
Sbjct:   249 LTGHEPQDLIEKTLYHHVHGCDVFHLRFAHHLLLVKGQVTTRYYRLLSKRGGWVWVQSCA 308

Query:    87 YITYHQWNSKPEFIVCTHRVVSYV 110
              I ++  +S+P  IV  + V++ V
Sbjct:   309 TIVHNSRSSRPHCIVSVNYVLTDV 332


>UNIPROTKB|E1BS65 [details] [associations]
            symbol:ARNT2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677 GO:GO:0003700
            GO:GO:0006351 GO:GO:0005667 GO:GO:0004871 SMART:SM00086
            TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10
            SUPFAM:SSF47459 EMBL:AADN02041540 EMBL:AADN02041541
            EMBL:AADN02041542 EMBL:AADN02041543 IPI:IPI00575824
            Ensembl:ENSGALT00000010398 ArrayExpress:E1BS65 Uniprot:E1BS65
        Length = 704

 Score = 118 (46.6 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 22/79 (27%), Positives = 47/79 (59%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTR 85
             +IGY P ++LG    ++ H +D   +    + +++ KG+  S  YRF TK ++W+ ++T 
Sbjct:   345 VIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKLKGQVLSVMYRFRTKNREWMLIRTS 404

Query:    86 FYITYHQWNSKPEFIVCTH 104
              +   + ++ + E+I+CT+
Sbjct:   405 SFTFQNPYSDEIEYIICTN 423


>MGI|MGI:107188 [details] [associations]
            symbol:Arnt2 "aryl hydrocarbon receptor nuclear translocator
            2" species:10090 "Mus musculus" [GO:0001666 "response to hypoxia"
            evidence=ISO;TAS] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;NAS] [GO:0005667
            "transcription factor complex" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISA] [GO:0007165 "signal
            transduction" evidence=NAS] [GO:0007417 "central nervous system
            development" evidence=IMP] [GO:0008284 "positive regulation of cell
            proliferation" evidence=ISO] [GO:0009410 "response to xenobiotic
            stimulus" evidence=TAS] [GO:0009636 "response to toxic substance"
            evidence=TAS] [GO:0017162 "aryl hydrocarbon receptor binding"
            evidence=IPI] [GO:0043066 "negative regulation of apoptotic
            process" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IGI;IDA] [GO:0046982 "protein heterodimerization activity"
            evidence=ISO;IPI] [GO:0046983 "protein dimerization activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 MGI:MGI:107188 GO:GO:0005737
            GO:GO:0007165 GO:GO:0043066 GO:GO:0032355 GO:GO:0003677
            GO:GO:0008284 GO:GO:0009636 GO:GO:0001701 GO:GO:0001666
            GO:GO:0045944 GO:GO:0007417 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0004871 GO:GO:0046982 SMART:SM00086
            TIGRFAMs:TIGR00229 eggNOG:NOG293303 GeneTree:ENSGT00650000092935
            GO:GO:0009410 Gene3D:4.10.280.10 SUPFAM:SSF47459 CTD:9915
            HOGENOM:HOG000234380 HOVERGEN:HBG000164 KO:K15589 OMA:VCMDMSG
            OrthoDB:EOG4K3KVQ EMBL:D63644 EMBL:AB093225 EMBL:BC054546
            IPI:IPI00403978 IPI:IPI00828407 RefSeq:NP_031514.2 UniGene:Mm.38594
            ProteinModelPortal:Q61324 SMR:Q61324 IntAct:Q61324 STRING:Q61324
            PhosphoSite:Q61324 PRIDE:Q61324 Ensembl:ENSMUST00000085077
            GeneID:11864 KEGG:mmu:11864 UCSC:uc009ief.1 UCSC:uc009ieh.1
            InParanoid:Q61324 NextBio:279871 Bgee:Q61324 CleanEx:MM_ARNT2
            Genevestigator:Q61324 GermOnline:ENSMUSG00000015709 Uniprot:Q61324
        Length = 712

 Score = 118 (46.6 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 21/79 (26%), Positives = 47/79 (59%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTR 85
             +IGY P ++LG    ++ H +D   +    + +++ KG+  S  YRF TK ++W+ ++T 
Sbjct:   357 VIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKLKGQVLSVMYRFRTKNREWLLIRTS 416

Query:    86 FYITYHQWNSKPEFIVCTH 104
              +   + ++ + E+++CT+
Sbjct:   417 SFTFQNPYSDEIEYVICTN 435


>RGD|2154 [details] [associations]
            symbol:Arnt2 "aryl hydrocarbon receptor nuclear translocator 2"
          species:10116 "Rattus norvegicus" [GO:0001666 "response to hypoxia"
          evidence=IEP;ISO] [GO:0001701 "in utero embryonic development"
          evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0003700
          "sequence-specific DNA binding transcription factor activity"
          evidence=IEA;ISO] [GO:0004871 "signal transducer activity"
          evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667
          "transcription factor complex" evidence=IEA;ISO] [GO:0005737
          "cytoplasm" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
          evidence=IEA] [GO:0006355 "regulation of transcription,
          DNA-dependent" evidence=ISO] [GO:0007417 "central nervous system
          development" evidence=IEA;ISO] [GO:0008284 "positive regulation of
          cell proliferation" evidence=IMP] [GO:0017162 "aryl hydrocarbon
          receptor binding" evidence=IEA;ISO] [GO:0032355 "response to
          estradiol stimulus" evidence=IEP] [GO:0042221 "response to chemical
          stimulus" evidence=TAS] [GO:0043066 "negative regulation of apoptotic
          process" evidence=IMP] [GO:0045893 "positive regulation of
          transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
          regulation of transcription from RNA polymerase II promoter"
          evidence=IEA;ISO] [GO:0046982 "protein heterodimerization activity"
          evidence=ISO;IDA] InterPro:IPR000014 InterPro:IPR001067
          InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010
          Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112
          PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
          InterPro:IPR001610 RGD:2154 GO:GO:0005634 GO:GO:0005737 GO:GO:0043066
          GO:GO:0032355 GO:GO:0003677 GO:GO:0008284 GO:GO:0001701 GO:GO:0001666
          GO:GO:0045944 GO:GO:0007417 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
          GO:GO:0004871 GO:GO:0046982 SMART:SM00086 TIGRFAMs:TIGR00229
          eggNOG:NOG293303 GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10
          SUPFAM:SSF47459 CTD:9915 HOGENOM:HOG000234380 HOVERGEN:HBG000164
          KO:K15589 OrthoDB:EOG4K3KVQ EMBL:U61157 EMBL:U61405 EMBL:AY264366
          EMBL:DQ223732 IPI:IPI00211044 IPI:IPI00829430 RefSeq:NP_036913.3
          UniGene:Rn.10518 HSSP:P27540 ProteinModelPortal:Q78E60 SMR:Q78E60
          STRING:Q78E60 PhosphoSite:Q78E60 Ensembl:ENSRNOT00000017636
          GeneID:25243 KEGG:rno:25243 UCSC:RGD:2154 InParanoid:Q78E60
          NextBio:605835 Genevestigator:Q78E60 Uniprot:Q78E60
        Length = 712

 Score = 118 (46.6 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 21/79 (26%), Positives = 47/79 (59%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTR 85
             +IGY P ++LG    ++ H +D   +    + +++ KG+  S  YRF TK ++W+ ++T 
Sbjct:   357 VIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKLKGQVLSVMYRFRTKNREWLLIRTS 416

Query:    86 FYITYHQWNSKPEFIVCTH 104
              +   + ++ + E+++CT+
Sbjct:   417 SFTFQNPYSDEIEYVICTN 435


>UNIPROTKB|Q9HBZ2 [details] [associations]
            symbol:ARNT2 "Aryl hydrocarbon receptor nuclear
            translocator 2" species:9606 "Homo sapiens" [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0008284 "positive
            regulation of cell proliferation" evidence=IEA] [GO:0032355
            "response to estradiol stimulus" evidence=IEA] [GO:0043066
            "negative regulation of apoptotic process" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0046982 "protein
            heterodimerization activity" evidence=ISS;IPI] [GO:0007417 "central
            nervous system development" evidence=ISS] [GO:0001701 "in utero
            embryonic development" evidence=ISS] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISS]
            [GO:0001666 "response to hypoxia" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0017162 "aryl
            hydrocarbon receptor binding" evidence=ISS] [GO:0006355 "regulation
            of transcription, DNA-dependent" evidence=IDA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045893 GO:GO:0043066 GO:GO:0032355
            GO:GO:0003677 GO:GO:0008284 GO:GO:0001701 GO:GO:0001666
            GO:GO:0045944 GO:GO:0007417 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0004871 EMBL:CH471136 GO:GO:0046982
            SMART:SM00086 TIGRFAMs:TIGR00229 eggNOG:NOG293303
            Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF185610 EMBL:AF185593
            EMBL:AF185594 EMBL:AF185595 EMBL:AF185596 EMBL:AF185597
            EMBL:AF185598 EMBL:AF185599 EMBL:AF185600 EMBL:AF185601
            EMBL:AF185602 EMBL:AF185603 EMBL:AF185604 EMBL:AF185605
            EMBL:AF185606 EMBL:AF185607 EMBL:AF185608 EMBL:AF185609
            EMBL:AB002305 EMBL:AK295763 EMBL:BX647212 EMBL:BC036099
            IPI:IPI00478506 IPI:IPI00796054 RefSeq:NP_055677.3
            UniGene:Hs.459070 ProteinModelPortal:Q9HBZ2 SMR:Q9HBZ2
            IntAct:Q9HBZ2 MINT:MINT-2867815 STRING:Q9HBZ2 PhosphoSite:Q9HBZ2
            DMDM:125987793 PRIDE:Q9HBZ2 DNASU:9915 Ensembl:ENST00000303329
            Ensembl:ENST00000527771 Ensembl:ENST00000533983 GeneID:9915
            KEGG:hsa:9915 UCSC:uc002bfr.3 CTD:9915 GeneCards:GC15P080696
            H-InvDB:HIX0012493 HGNC:HGNC:16876 HPA:CAB005081 HPA:HPA001056
            MIM:606036 neXtProt:NX_Q9HBZ2 PharmGKB:PA24995 HOGENOM:HOG000234380
            HOVERGEN:HBG000164 InParanoid:Q9HBZ2 KO:K15589 OMA:VCMDMSG
            OrthoDB:EOG4K3KVQ ChiTaRS:ARNT2 GenomeRNAi:9915 NextBio:37404
            ArrayExpress:Q9HBZ2 Bgee:Q9HBZ2 CleanEx:HS_ARNT2
            Genevestigator:Q9HBZ2 GermOnline:ENSG00000172379 GO:GO:0017162
            Uniprot:Q9HBZ2
        Length = 717

 Score = 118 (46.6 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 22/79 (27%), Positives = 47/79 (59%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTR 85
             +IGY P ++LG    ++ H +D   +    + +++ KG+  S  YRF TK ++W+ ++T 
Sbjct:   357 VIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKLKGQVLSVMYRFRTKNREWMLIRTS 416

Query:    86 FYITYHQWNSKPEFIVCTH 104
              +   + ++ + E+I+CT+
Sbjct:   417 SFTFQNPYSDEIEYIICTN 435


>UNIPROTKB|E1BS64 [details] [associations]
            symbol:ARNT2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0004871 "signal transducer activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0007417 "central nervous system development"
            evidence=IEA] [GO:0017162 "aryl hydrocarbon receptor binding"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677
            GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            OMA:VCMDMSG EMBL:AADN02041540 EMBL:AADN02041541 EMBL:AADN02041542
            EMBL:AADN02041543 IPI:IPI00587220 Ensembl:ENSGALT00000010400
            ArrayExpress:E1BS64 Uniprot:E1BS64
        Length = 725

 Score = 118 (46.6 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 22/79 (27%), Positives = 47/79 (59%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTR 85
             +IGY P ++LG    ++ H +D   +    + +++ KG+  S  YRF TK ++W+ ++T 
Sbjct:   360 VIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKLKGQVLSVMYRFRTKNREWMLIRTS 419

Query:    86 FYITYHQWNSKPEFIVCTH 104
              +   + ++ + E+I+CT+
Sbjct:   420 SFTFQNPYSDEIEYIICTN 438


>FB|FBgn0262139 [details] [associations]
            symbol:trh "trachealess" species:7227 "Drosophila
            melanogaster" [GO:0072175 "epithelial tube formation" evidence=IMP]
            [GO:0005634 "nucleus" evidence=ISS;NAS;IDA;TAS] [GO:0000981
            "sequence-specific DNA binding RNA polymerase II transcription
            factor activity" evidence=ISS] [GO:0007424 "open tracheal system
            development" evidence=NAS;IMP;TAS] [GO:0007431 "salivary gland
            development" evidence=NAS;IMP] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IPI] [GO:0046982 "protein
            heterodimerization activity" evidence=TAS;IPI] [GO:0035277
            "spiracle morphogenesis, open tracheal system" evidence=IMP]
            [GO:0007443 "Malpighian tubule morphogenesis" evidence=IMP]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS;TAS;IPI] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=NAS]
            [GO:0007425 "epithelial cell fate determination, open tracheal
            system" evidence=IMP;TAS] [GO:0007435 "salivary gland
            morphogenesis" evidence=IMP;TAS] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0007165 "signal transduction"
            evidence=IEA] [GO:0048813 "dendrite morphogenesis" evidence=IMP]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000014
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50113
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 EMBL:AE014296 GO:GO:0007435 GO:GO:0043565
            GO:GO:0035277 GO:GO:0048813 GO:GO:0004871 GO:GO:0000981
            GO:GO:0046982 SMART:SM00086 GO:GO:0046331 SUPFAM:SSF47459
            GO:GO:0007425 GO:GO:0007443 eggNOG:NOG287666 KO:K09098
            GO:GO:0072175 CTD:7200 EMBL:U33427 EMBL:U42699 EMBL:BT031114
            EMBL:AY094911 RefSeq:NP_001036575.1 RefSeq:NP_001097461.2
            RefSeq:NP_523872.2 UniGene:Dm.7330 ProteinModelPortal:Q24119
            SMR:Q24119 STRING:Q24119 GeneID:38065 KEGG:dme:Dmel_CG42865
            FlyBase:FBgn0262139 InParanoid:Q24119 OMA:PNASESH OrthoDB:EOG4JWSVB
            GenomeRNAi:38065 NextBio:806807 Bgee:Q24119 GermOnline:CG6883
            Uniprot:Q24119
        Length = 1022

 Score = 119 (46.9 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
             ++ Y P +++  S Y   H +D + +   H  L++KG+  + YYR + K   + WLQT  
Sbjct:   425 LLDYSPEDLVNKSLYSLCHAEDANRLRKSHSDLIEKGQVLTGYYRLMNKSGGYTWLQTCA 484

Query:    87 YITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPD 122
              +     N+  + I+C + V+S  N  R + N + D
Sbjct:   485 TVVCSTKNADEQNIICVNYVIS--N--RENENMILD 516


>UNIPROTKB|Q8TAR6 [details] [associations]
            symbol:PER3 "Period circadian protein homolog 3"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0007623 "circadian rhythm" evidence=IEA] InterPro:IPR000014
            InterPro:IPR013655 Pfam:PF08447 PROSITE:PS50112 SMART:SM00091
            InterPro:IPR001610 GO:GO:0007623 GO:GO:0000122 GO:GO:0004871
            SMART:SM00086 EMBL:Z98884 HOVERGEN:HBG008167 UniGene:Hs.162200
            HGNC:HGNC:8847 ChiTaRS:PER3 EMBL:BC026102 IPI:IPI00644811
            SMR:Q8TAR6 IntAct:Q8TAR6 STRING:Q8TAR6 Ensembl:ENST00000377541
            UCSC:uc001aon.3 HOGENOM:HOG000150477 Uniprot:Q8TAR6
        Length = 378

 Score = 112 (44.5 bits), Expect = 6.8e-06, P = 6.8e-06
 Identities = 28/90 (31%), Positives = 47/90 (52%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY----YRFLTKG 76
             D  A P++GYLP +++GTS   Y H +D   +V  H+ ++ K  G   +     RF T+ 
Sbjct:   288 DEKAVPLLGYLPQDLIGTSILSYLHPEDRSLMVAIHQKVL-KYAGHPPFEHSPIRFCTQN 346

Query:    77 QQWIWLQTRFYITYHQWNSKPEFIVCTHRV 106
               +I L + +    + W+ K  FI+  H+V
Sbjct:   347 GDYIILDSSWSSFVNPWSRKISFIIGRHKV 376


>UNIPROTKB|F1PF11 [details] [associations]
            symbol:PER3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR013655
            Pfam:PF08447 PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610
            GO:GO:0006355 GO:GO:0004871 SMART:SM00086 InterPro:IPR022728
            Pfam:PF12114 GeneTree:ENSGT00510000046467 OMA:FKHVGLT
            EMBL:AAEX03003917 Ensembl:ENSCAFT00000031273 Uniprot:F1PF11
        Length = 1131

 Score = 108 (43.1 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
 Identities = 26/87 (29%), Positives = 46/87 (52%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY----YRFLTKGQQW 79
             A P++GYLP +++G S   Y H +D   ++T H+ ++ K  G   +     RF T+   +
Sbjct:   289 AVPLLGYLPQDLMGRSVLTYLHPEDRSLMLTVHQKVL-KYAGHPPFEHSPIRFCTQNGDY 347

Query:    80 IWLQTRFYITYHQWNSKPEFIVCTHRV 106
             I L + +    + W+ K  FI+  H+V
Sbjct:   348 IILDSSWSSFVNPWSRKVSFIIGRHKV 374

 Score = 34 (17.0 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query:   113 LRRDNNQVPDSEEQSNDTGPGDSNTIK 139
             ++R N+ VP  E  S         T+K
Sbjct:   484 VKRFNSSVPQPEACSEQKASSPLQTLK 510


>RGD|1307181 [details] [associations]
            symbol:Npas3 "neuronal PAS domain protein 3" species:10116
            "Rattus norvegicus" [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0005730
            "nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447
            PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045893 GO:GO:0007626 GO:GO:0004871
            GO:GO:0035176 SMART:SM00086 GeneTree:ENSGT00700000104038
            GO:GO:0042711 IPI:IPI00367100 Ensembl:ENSRNOT00000049945
            Uniprot:F1M4F7
        Length = 636

 Score = 114 (45.2 bits), Expect = 8.8e-06, P = 8.8e-06
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:    74 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAIN 133

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   134 AKNANEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKASESSETSDSESDS 184


>UNIPROTKB|F1SHH0 [details] [associations]
            symbol:LOC100739785 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005730 "nucleolus" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0042711 "maternal behavior" evidence=IEA]
            [GO:0035176 "social behavior" evidence=IEA] [GO:0007626 "locomotory
            behavior" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447
            PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045893 GO:GO:0004871 SMART:SM00086
            GeneTree:ENSGT00700000104038 OMA:FENPKAA EMBL:CU467954
            EMBL:CU468220 Ensembl:ENSSSCT00000002197 Uniprot:F1SHH0
        Length = 650

 Score = 114 (45.2 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:    92 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAIN 151

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   152 AKNANEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKTSESSETSDSESDS 202


>UNIPROTKB|F1MB19 [details] [associations]
            symbol:NPAS3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005730 "nucleolus" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0042711 "maternal behavior" evidence=IEA] [GO:0035176 "social
            behavior" evidence=IEA] [GO:0007626 "locomotory behavior"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447
            PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045893 GO:GO:0007626 GO:GO:0004871
            GO:GO:0035176 SMART:SM00086 GeneTree:ENSGT00700000104038
            GO:GO:0042711 OMA:FENPKAA EMBL:DAAA02052717 IPI:IPI00714021
            Ensembl:ENSBTAT00000005853 Uniprot:F1MB19
        Length = 651

 Score = 114 (45.2 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:    76 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAIN 135

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   136 AKNANEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKTSESSETSDSESDS 186


>UNIPROTKB|F1PI90 [details] [associations]
            symbol:NPAS3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0042711 "maternal behavior"
            evidence=IEA] [GO:0035176 "social behavior" evidence=IEA]
            [GO:0007626 "locomotory behavior" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0004871 "signal transducer activity" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447 PROSITE:PS50112
            SMART:SM00091 InterPro:IPR001610 GO:GO:0005634 GO:GO:0005737
            GO:GO:0006355 GO:GO:0007626 GO:GO:0004871 GO:GO:0035176
            SMART:SM00086 GeneTree:ENSGT00700000104038 GO:GO:0042711
            EMBL:AAEX03005658 EMBL:AAEX03005657 Ensembl:ENSCAFT00000020917
            Uniprot:F1PI90
        Length = 657

 Score = 114 (45.2 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:    92 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAIN 151

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   152 AKNANEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKTSESSETSDSESDS 202


>UNIPROTKB|J9NTF3 [details] [associations]
            symbol:NPAS3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR013655
            Pfam:PF08447 PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610
            GO:GO:0006355 GO:GO:0004871 SMART:SM00086
            GeneTree:ENSGT00700000104038 EMBL:AAEX03005658 EMBL:AAEX03005657
            Ensembl:ENSCAFT00000046640 OMA:ESCISAR Uniprot:J9NTF3
        Length = 707

 Score = 114 (45.2 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:   124 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAIN 183

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   184 AKNANEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKTSESSETSDSESDS 234


>UNIPROTKB|F6ZT88 [details] [associations]
            symbol:NPAS3 "Uncharacterized protein" species:13616
            "Monodelphis domestica" [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0005730 "nucleolus" evidence=ISS] InterPro:IPR000014
            InterPro:IPR013655 Pfam:PF08447 PROSITE:PS50112 SMART:SM00091
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0006355 GO:GO:0004871
            SMART:SM00086 Ensembl:ENSMODT00000022361 Uniprot:F6ZT88
        Length = 726

 Score = 114 (45.2 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:   153 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAIN 212

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   213 AKNANEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKTSESSETSDSESDS 263


>UNIPROTKB|F1NG48 [details] [associations]
            symbol:NPAS3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0004871 "signal transducer activity" evidence=IEA]
            [GO:0007626 "locomotory behavior" evidence=IEA] [GO:0035176 "social
            behavior" evidence=IEA] [GO:0042711 "maternal behavior"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005730 "nucleolus"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447
            PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045893 GO:GO:0004871 SMART:SM00086
            GeneTree:ENSGT00700000104038 OMA:FENPKAA EMBL:AADN02003378
            EMBL:AADN02003379 EMBL:AADN02003380 IPI:IPI00575845
            Ensembl:ENSGALT00000016244 Uniprot:F1NG48
        Length = 727

 Score = 114 (45.2 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:   173 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAVN 232

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   233 AKNASEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKTSESSETSDSESDS 283


>ZFIN|ZDB-GENE-001207-3 [details] [associations]
            symbol:arnt2 "aryl hydrocarbon receptor nuclear
            translocator 2" species:7955 "Danio rerio" [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA;IDA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA;IC] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA;IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA;IDA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0048798 "swim bladder inflation" evidence=IMP]
            [GO:0021591 "ventricular system development" evidence=IMP]
            [GO:0072576 "liver morphogenesis" evidence=IMP] [GO:0003208
            "cardiac ventricle morphogenesis" evidence=IMP] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=IPI]
            [GO:0001666 "response to hypoxia" evidence=IDA] [GO:0016337
            "cell-cell adhesion" evidence=IMP] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0021979 "hypothalamus cell differentiation"
            evidence=IMP] [GO:0071542 "dopaminergic neuron differentiation"
            evidence=IMP] [GO:0021536 "diencephalon development" evidence=IMP]
            InterPro:IPR000014 InterPro:IPR001067 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            ZFIN:ZDB-GENE-001207-3 GO:GO:0005737 GO:GO:0045893 GO:GO:0003677
            GO:GO:0071542 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
            GO:GO:0004871 GO:GO:0016337 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            GO:GO:0021591 GO:GO:0003208 GO:GO:0072576 GO:GO:0021979
            EMBL:BX936312 EMBL:CABZ01029550 EMBL:CABZ01029551 EMBL:CABZ01029561
            EMBL:CABZ01029562 EMBL:CABZ01029563 EMBL:CABZ01029564 EMBL:CU652843
            EMBL:CU695017 EMBL:FP017235 EMBL:FP236184 IPI:IPI00504497
            Ensembl:ENSDART00000129575 ArrayExpress:F1QVH4 Bgee:F1QVH4
            GO:GO:0048798 Uniprot:F1QVH4
        Length = 738

 Score = 113 (44.8 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 26/104 (25%), Positives = 53/104 (50%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTR 85
             +IGY P ++LG    ++ H +D   +    + +++ KG+  S  YRF  K ++W+ ++T 
Sbjct:   372 VIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKLKGQVLSVMYRFRMKNREWMLIRTS 431

Query:    86 FYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSND 129
              +   + ++ + E+I+CT+      NV +    Q  + E    D
Sbjct:   432 SFTFQNPYSDEIEYIICTN-----TNVKQLQQQQQAELEVHQRD 470


>UNIPROTKB|F8VS42 [details] [associations]
            symbol:NPAS3 "Neuronal PAS domain-containing protein 3"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086 SUPFAM:SSF47459
            HGNC:HGNC:19311 EMBL:AL109769 EMBL:AL133305 EMBL:AL139296
            EMBL:AL157689 EMBL:AL158802 EMBL:AL161851 EMBL:AL355886
            IPI:IPI01021732 ProteinModelPortal:F8VS42 SMR:F8VS42
            Ensembl:ENST00000551634 ArrayExpress:F8VS42 Bgee:F8VS42
            Uniprot:F8VS42
        Length = 906

 Score = 114 (45.2 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:   335 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAIN 394

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   395 AKNANEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKTSESSETSDSESDS 445


>UNIPROTKB|F6VP83 [details] [associations]
            symbol:NPAS3 "Uncharacterized protein" species:9544 "Macaca
            mulatta" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0005730 "nucleolus"
            evidence=ISS] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893
            GO:GO:0003677 GO:GO:0007626 GO:GO:0006351 GO:GO:0004871
            GO:GO:0035176 SMART:SM00086 SUPFAM:SSF47459
            GeneTree:ENSGT00700000104038 GO:GO:0042711 OMA:FENPKAA
            Ensembl:ENSMMUT00000020820 Uniprot:F6VP83
        Length = 913

 Score = 114 (45.2 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:   342 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAIN 401

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   402 AKNANEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKTSESSETSDSESDS 452


>MGI|MGI:1351610 [details] [associations]
            symbol:Npas3 "neuronal PAS domain protein 3" species:10090
            "Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
            [GO:0007610 "behavior" evidence=IMP] [GO:0007626 "locomotory
            behavior" evidence=IMP] [GO:0035176 "social behavior" evidence=IMP]
            [GO:0042711 "maternal behavior" evidence=IMP] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0046983 "protein dimerization activity" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 MGI:MGI:1351610 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045893 GO:GO:0003677 GO:GO:0007626 GO:GO:0006351
            GO:GO:0004871 GO:GO:0035176 SMART:SM00086 SUPFAM:SSF47459
            GO:GO:0042711 eggNOG:NOG287666 OrthoDB:EOG4M0F1J HOVERGEN:HBG052656
            EMBL:AF173871 EMBL:AF168769 IPI:IPI00137835 UniGene:Mm.247044
            UniGene:Mm.466545 ProteinModelPortal:Q9QZQ0 SMR:Q9QZQ0
            STRING:Q9QZQ0 PhosphoSite:Q9QZQ0 PRIDE:Q9QZQ0 UCSC:uc007nno.1
            HOGENOM:HOG000113836 InParanoid:Q9QZQ0 CleanEx:MM_NPAS3
            Genevestigator:Q9QZQ0 GermOnline:ENSMUSG00000021010 Uniprot:Q9QZQ0
        Length = 925

 Score = 114 (45.2 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:   363 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAIN 422

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   423 AKNANEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKASESSETSDSESDS 473


>UNIPROTKB|F7HC48 [details] [associations]
            symbol:NPAS3 "Uncharacterized protein" species:9483
            "Callithrix jacchus" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0005730 "nucleolus" evidence=ISS] InterPro:IPR000014
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 GO:GO:0006351
            GO:GO:0004871 SMART:SM00086 SUPFAM:SSF47459
            GeneTree:ENSGT00700000104038 OMA:FENPKAA EMBL:ACFV01030586
            EMBL:ACFV01030587 EMBL:ACFV01030588 EMBL:ACFV01030589
            EMBL:ACFV01030590 EMBL:ACFV01030591 EMBL:ACFV01030592
            EMBL:ACFV01030593 EMBL:ACFV01030594 EMBL:ACFV01030595
            EMBL:ACFV01030596 EMBL:ACFV01030597 EMBL:ACFV01030598
            EMBL:ACFV01030599 EMBL:ACFV01030600 EMBL:ACFV01030601
            EMBL:ACFV01030602 EMBL:ACFV01030603 EMBL:ACFV01030604
            EMBL:ACFV01030605 EMBL:ACFV01030606 EMBL:ACFV01030607
            EMBL:ACFV01030608 EMBL:ACFV01030609 EMBL:ACFV01030610
            EMBL:ACFV01030611 EMBL:ACFV01030612 EMBL:ACFV01030613
            Ensembl:ENSCJAT00000010549 Uniprot:F7HC48
        Length = 932

 Score = 114 (45.2 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:   358 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAIN 417

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   418 AKNANEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKTSESSETSDSESDS 468


>UNIPROTKB|Q8IXF0 [details] [associations]
            symbol:NPAS3 "Neuronal PAS domain-containing protein 3"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0007626
            "locomotory behavior" evidence=IEA] [GO:0035176 "social behavior"
            evidence=IEA] [GO:0042711 "maternal behavior" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50113 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893
            GO:GO:0003677 GO:GO:0007626 GO:GO:0006351 GO:GO:0004871
            GO:GO:0035176 SMART:SM00086 SUPFAM:SSF47459 GO:GO:0042711
            eggNOG:NOG287666 KO:K09098 EMBL:AB055962 EMBL:AB054575
            EMBL:AB054576 EMBL:AF164438 EMBL:AY157302 EMBL:AY157303
            EMBL:AL079281 IPI:IPI00217513 IPI:IPI00394963 IPI:IPI00394964
            IPI:IPI00394965 IPI:IPI00394966 IPI:IPI00394967
            RefSeq:NP_001158221.1 RefSeq:NP_001159365.1 RefSeq:NP_071406.1
            RefSeq:NP_775182.1 UniGene:Hs.657892 UniGene:Hs.675437
            UniGene:Hs.675475 ProteinModelPortal:Q8IXF0 SMR:Q8IXF0
            STRING:Q8IXF0 PhosphoSite:Q8IXF0 DMDM:38604888 PaxDb:Q8IXF0
            PRIDE:Q8IXF0 DNASU:64067 Ensembl:ENST00000341321
            Ensembl:ENST00000346562 Ensembl:ENST00000356141
            Ensembl:ENST00000357798 Ensembl:ENST00000547068
            Ensembl:ENST00000548645 GeneID:64067 KEGG:hsa:64067 UCSC:uc001wrs.3
            UCSC:uc001wrt.3 UCSC:uc001wru.3 UCSC:uc001wrv.3 CTD:64067
            GeneCards:GC14P033408 HGNC:HGNC:19311 HPA:HPA002892 MIM:609430
            neXtProt:NX_Q8IXF0 PharmGKB:PA134968746 HOVERGEN:HBG052656
            InParanoid:Q8IXF0 PhylomeDB:Q8IXF0 GenomeRNAi:64067 NextBio:65842
            ArrayExpress:Q8IXF0 Bgee:Q8IXF0 CleanEx:HS_NPAS3
            Genevestigator:Q8IXF0 GermOnline:ENSG00000151322 Uniprot:Q8IXF0
        Length = 933

 Score = 114 (45.2 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:   358 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAIN 417

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   418 AKNANEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKTSESSETSDSESDS 468


>UNIPROTKB|F8VR32 [details] [associations]
            symbol:NPAS3 "Neuronal PAS domain-containing protein 3"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0046983 "protein dimerization activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000014 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 GO:GO:0004871 SMART:SM00086 SUPFAM:SSF47459
            HGNC:HGNC:19311 EMBL:AL109769 EMBL:AL133305 EMBL:AL139296
            EMBL:AL157689 EMBL:AL158802 EMBL:AL161851 EMBL:AL355886
            IPI:IPI01021176 ProteinModelPortal:F8VR32 SMR:F8VR32
            Ensembl:ENST00000551492 OMA:FENPKAA ArrayExpress:F8VR32 Bgee:F8VR32
            Uniprot:F8VR32
        Length = 938

 Score = 114 (45.2 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 28/112 (25%), Positives = 59/112 (52%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P +++G   Y + H +D++ +   H  L+ KG+  + YYR++ K   +IW+Q+   I  +
Sbjct:   363 PVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAIN 422

Query:    92 QWNSKPEFIVCTHRVVS---YVNVLRRDNNQVPDSEE---QSNDTGPGDSNT 137
               N+  + I+  + ++S   Y +    D  Q+P   E   +S++T   +S++
Sbjct:   423 AKNANEKNIIWVNYLLSNPEYKDT-PMDIAQLPHLPEKTSESSETSDSESDS 473


>RGD|621581 [details] [associations]
            symbol:Per3 "period circadian clock 3" species:10116 "Rattus
            norvegicus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=ISO] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0007623 "circadian rhythm" evidence=ISO] [GO:0048511 "rhythmic
            process" evidence=IEA] InterPro:IPR000014 InterPro:IPR013655
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50113 SMART:SM00091
            InterPro:IPR001610 RGD:621581 GO:GO:0005634 GO:GO:0005737
            GO:GO:0007623 GO:GO:0006351 GO:GO:0000122 GO:GO:0004871
            SMART:SM00086 HSSP:P27540 HOGENOM:HOG000231111 HOVERGEN:HBG008167
            KO:K02633 InterPro:IPR022728 Pfam:PF12114 CTD:8863 eggNOG:NOG269786
            OrthoDB:EOG4Q2DF8 EMBL:AB092512 IPI:IPI00194762 RefSeq:NP_076468.2
            UniGene:Rn.230006 ProteinModelPortal:Q8CJE2 STRING:Q8CJE2
            PRIDE:Q8CJE2 GeneID:78962 KEGG:rno:78962 UCSC:RGD:621581
            InParanoid:Q8CJE2 NextBio:614392 ArrayExpress:Q8CJE2
            Genevestigator:Q8CJE2 GermOnline:ENSRNOG00000018413 Uniprot:Q8CJE2
        Length = 1119

 Score = 104 (41.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
 Identities = 25/87 (28%), Positives = 46/87 (52%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY----YRFLTKGQQW 79
             A P++G+LP +++GTS   Y H +D   +V  H+ ++ K  G   +     RF T+   +
Sbjct:   288 AVPLLGFLPQDLIGTSILTYLHPEDRPLMVAVHQKVL-KYVGHPPFEHSPIRFCTQNGDY 346

Query:    80 IWLQTRFYITYHQWNSKPEFIVCTHRV 106
             + L + +    + W+ K  FI+  H+V
Sbjct:   347 VILDSSWSSFVNPWSRKVSFIIGRHKV 373

 Score = 35 (17.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query:   115 RDNNQVPDSEEQSNDTGPGDS 135
             RD  Q+ D  EQ   T   D+
Sbjct:   579 RDTEQLLDIPEQETTTPSADA 599


>UNIPROTKB|E1C8E2 [details] [associations]
            symbol:PER3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0004871 "signal transducer activity" evidence=IEA]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0007623 "circadian
            rhythm" evidence=IEA] InterPro:IPR000014 InterPro:IPR013655
            Pfam:PF08447 PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610
            GO:GO:0007623 GO:GO:0000122 GO:GO:0004871 SMART:SM00086
            InterPro:IPR022728 Pfam:PF12114 GeneTree:ENSGT00510000046467
            OMA:FKHVGLT EMBL:AADN02040958 IPI:IPI00588409
            Ensembl:ENSGALT00000000797 ArrayExpress:E1C8E2 Uniprot:E1C8E2
        Length = 1101

 Score = 114 (45.2 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 26/86 (30%), Positives = 46/86 (53%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYY--RFLTKGQQWI 80
             A P++GYLP +++GTS   Y H +D   ++  H  +++  G+    Y   RF T+   ++
Sbjct:   236 AVPLLGYLPQDLIGTSILMYLHPEDRPLMIAIHRKILKFAGQPPFEYLPIRFCTQNGDYV 295

Query:    81 WLQTRFYITYHQWNSKPEFIVCTHRV 106
              L T +    + W+ K  FI+  H+V
Sbjct:   296 ILDTSWSSFVNPWSRKVAFIIGRHKV 321


>ZFIN|ZDB-GENE-060126-7 [details] [associations]
            symbol:arnt "aryl hydrocarbon receptor nuclear
            translocator" species:7955 "Danio rerio" [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0007165 "signal transduction" evidence=IEA] [GO:0046983
            "protein dimerization activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IPI] [GO:0009410 "response to xenobiotic
            stimulus" evidence=IPI] [GO:0043565 "sequence-specific DNA binding"
            evidence=IPI] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0009636
            "response to toxic substance" evidence=IMP] InterPro:IPR000014
            InterPro:IPR001067 InterPro:IPR011598 InterPro:IPR013655
            InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989 Pfam:PF08447
            PRINTS:PR00785 PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091
            SMART:SM00353 InterPro:IPR001610 ZFIN:ZDB-GENE-060126-7
            GO:GO:0005737 GO:GO:0045893 GO:GO:0009636 GO:GO:0043565
            GO:GO:0003700 GO:GO:0006351 GO:GO:0005667 GO:GO:0004871
            SMART:SM00086 TIGRFAMs:TIGR00229 GeneTree:ENSGT00650000092935
            GO:GO:0009410 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:BX927222
            IPI:IPI00997127 Ensembl:ENSDART00000121648 Bgee:E7FDK6
            Uniprot:E7FDK6
        Length = 746

 Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 22/92 (23%), Positives = 50/92 (54%)

Query:    18 TIYDLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVV-TCHEALMQKGEGTSCYYRFLTKG 76
             T  D      +G+   E+LG +  D+ H +D   +  +  + +  +G+  S  +RF +K 
Sbjct:   349 TFVDHRCTATVGFQTQELLGKNILDFAHPEDQGLLRDSLQQVVKLRGQVMSVMFRFQSKS 408

Query:    77 QQWIWLQTRFYITYHQWNSKPEFIVCTHRVVS 108
             ++W+W++T  +   + ++ + E+I+CT+  V+
Sbjct:   409 REWVWMRTSSFTFQNPFSEEIEYIICTNTNVN 440


>UNIPROTKB|F1PPH3 [details] [associations]
            symbol:ARNT2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0017162 "aryl
            hydrocarbon receptor binding" evidence=IEA] [GO:0007417 "central
            nervous system development" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0001701
            "in utero embryonic development" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
            dimerization activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR001067
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PRINTS:PR00785
            PROSITE:PS50112 PROSITE:PS50888 SMART:SM00091 SMART:SM00353
            InterPro:IPR001610 GO:GO:0005737 GO:GO:0003677 GO:GO:0001701
            GO:GO:0045944 GO:GO:0007417 GO:GO:0003700 GO:GO:0006351
            GO:GO:0005667 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            GeneTree:ENSGT00650000092935 Gene3D:4.10.280.10 SUPFAM:SSF47459
            OMA:VCMDMSG EMBL:AAEX03002373 EMBL:AAEX03002374 EMBL:AAEX03002375
            Ensembl:ENSCAFT00000022111 Uniprot:F1PPH3
        Length = 717

 Score = 111 (44.1 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 20/79 (25%), Positives = 46/79 (58%)

Query:    27 IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTSCYYRFLTKGQQWIWLQTR 85
             +IGY P ++LG    ++ H +D   +    + +++ KG+  S  YR  TK ++W+ ++T 
Sbjct:   357 VIGYQPQDLLGKDILEFCHSEDQSHLRESFQQVVKLKGQVLSVMYRLRTKSREWMLIRTS 416

Query:    86 FYITYHQWNSKPEFIVCTH 104
              +   + ++ + E+++CT+
Sbjct:   417 SFTFQNPYSDEIEYVICTN 435


>RGD|1310040 [details] [associations]
            symbol:Npas1 "neuronal PAS domain protein 1" species:10116
            "Rattus norvegicus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA;ISO]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0007610 "behavior" evidence=IEA;ISO] [GO:0046983
            "protein dimerization activity" evidence=IEA] InterPro:IPR000014
            InterPro:IPR011598 InterPro:IPR013655 InterPro:IPR013767
            Pfam:PF00010 Pfam:PF00989 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50888 SMART:SM00091 SMART:SM00353 InterPro:IPR001610
            RGD:1310040 GO:GO:0005634 GO:GO:0003677 GO:GO:0007610 GO:GO:0006351
            GO:GO:0000122 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            SUPFAM:SSF47459 GeneTree:ENSGT00700000104038 EMBL:CH473979 CTD:4861
            KO:K09098 OMA:VYPHLQR OrthoDB:EOG4M0F1J IPI:IPI00373182
            RefSeq:NP_001100949.1 UniGene:Rn.211375 Ensembl:ENSRNOT00000020855
            GeneID:308387 KEGG:rno:308387 UCSC:RGD:1310040 NextBio:658741
            Uniprot:D3ZJ66
        Length = 595

 Score = 110 (43.8 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 28/105 (26%), Positives = 54/105 (51%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P E++G S Y + H  D+  +   H  L+ KG+  + YYR+L +   ++WLQ+   +  +
Sbjct:   332 PSELVGRSCYQFVHGQDVTRIRQSHLDLLDKGQVVTGYYRWLQRAGGFVWLQSVATVAGN 391

Query:    92 QWNSKPEFIVCTHRVVSYVNVLRR--DNNQVPD--SEEQSNDTGP 132
               ++    ++    V+S+    +   D  Q+P   S+E+S+  GP
Sbjct:   392 GKSAGEHHVLWVSHVLSHAEGGQTPLDAFQLPAIVSQEESSSPGP 436


>UNIPROTKB|J9PAN3 [details] [associations]
            symbol:PER2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR013655
            Pfam:PF08447 PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610
            GO:GO:0006355 GO:GO:0004871 SMART:SM00086 InterPro:IPR022728
            Pfam:PF12114 GeneTree:ENSGT00510000046467 EMBL:AAEX03014498
            EMBL:AAEX03014496 EMBL:AAEX03014497 Ensembl:ENSCAFT00000047869
            Uniprot:J9PAN3
        Length = 1015

 Score = 112 (44.5 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 31/107 (28%), Positives = 50/107 (46%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY--YRFLTKGQQWIW 81
             A P++GYLP +++ T      H  D   +VT H+ ++Q G     Y   RF  +  +++ 
Sbjct:    93 AVPLLGYLPQDLIETPVLVRLHPGDRPLMVTVHKKIVQSGGQPFDYSPIRFRARNGEYVT 152

Query:    82 LQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSN 128
             L T +    + W+ K  FI+  HRV   V  L  D    P   E+ +
Sbjct:   153 LDTSWSSFINPWSRKISFIIGRHRV--RVGPLNEDVFSAPSLVEEKD 197


>UNIPROTKB|P56645 [details] [associations]
            symbol:PER3 "Period circadian protein homolog 3"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0007623
            "circadian rhythm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50113 SMART:SM00091 InterPro:IPR001610 GO:GO:0005634
            GO:GO:0005737 GO:GO:0007623 GO:GO:0006351 GO:GO:0000122
            GO:GO:0004871 SMART:SM00086 EMBL:Z98884 HOVERGEN:HBG008167
            KO:K02633 InterPro:IPR022728 Pfam:PF12114 EMBL:AB047521
            EMBL:AB047530 EMBL:AB047531 EMBL:AB047532 EMBL:AB047533
            EMBL:AB047534 EMBL:AB047686 EMBL:AL157954 EMBL:AY493418
            IPI:IPI00604502 IPI:IPI00828102 RefSeq:NP_058515.1
            UniGene:Hs.162200 ProteinModelPortal:P56645 SMR:P56645
            IntAct:P56645 STRING:P56645 PhosphoSite:P56645 DMDM:66774152
            PaxDb:P56645 PRIDE:P56645 DNASU:8863 Ensembl:ENST00000361923
            Ensembl:ENST00000377532 GeneID:8863 KEGG:hsa:8863 UCSC:uc001aoo.3
            UCSC:uc001aop.3 CTD:8863 GeneCards:GC01P007778 HGNC:HGNC:8847
            HPA:HPA019530 MIM:603427 neXtProt:NX_P56645 PharmGKB:PA33186
            eggNOG:NOG269786 OMA:FKHVGLT ChiTaRS:PER3 GenomeRNAi:8863
            NextBio:33281 ArrayExpress:P56645 Bgee:P56645 CleanEx:HS_PER3
            Genevestigator:P56645 GermOnline:ENSG00000049246 Uniprot:P56645
        Length = 1201

 Score = 112 (44.5 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 28/90 (31%), Positives = 47/90 (52%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY----YRFLTKG 76
             D  A P++GYLP +++GTS   Y H +D   +V  H+ ++ K  G   +     RF T+ 
Sbjct:   288 DEKAVPLLGYLPQDLIGTSILSYLHPEDRSLMVAIHQKVL-KYAGHPPFEHSPIRFCTQN 346

Query:    77 QQWIWLQTRFYITYHQWNSKPEFIVCTHRV 106
               +I L + +    + W+ K  FI+  H+V
Sbjct:   347 GDYIILDSSWSSFVNPWSRKISFIIGRHKV 376


>UNIPROTKB|F1PL32 [details] [associations]
            symbol:PER2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0004871 "signal transducer
            activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR013655
            Pfam:PF08447 PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610
            GO:GO:0006355 GO:GO:0004871 SMART:SM00086 KO:K02633
            InterPro:IPR022728 Pfam:PF12114 GeneTree:ENSGT00510000046467
            CTD:8864 OMA:NATAWSP EMBL:AAEX03014498 EMBL:AAEX03014496
            EMBL:AAEX03014497 RefSeq:XP_543306.2 Ensembl:ENSCAFT00000019727
            GeneID:486180 KEGG:cfa:486180 Uniprot:F1PL32
        Length = 1265

 Score = 112 (44.5 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 31/107 (28%), Positives = 50/107 (46%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY--YRFLTKGQQWIW 81
             A P++GYLP +++ T      H  D   +VT H+ ++Q G     Y   RF  +  +++ 
Sbjct:   343 AVPLLGYLPQDLIETPVLVRLHPGDRPLMVTVHKKIVQSGGQPFDYSPIRFRARNGEYVT 402

Query:    82 LQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQSN 128
             L T +    + W+ K  FI+  HRV   V  L  D    P   E+ +
Sbjct:   403 LDTSWSSFINPWSRKISFIIGRHRV--RVGPLNEDVFSAPSLVEEKD 447


>MGI|MGI:1277134 [details] [associations]
            symbol:Per3 "period circadian clock 3" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0004871 "signal
            transducer activity" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0007623 "circadian rhythm"
            evidence=IDA] [GO:0048511 "rhythmic process" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50113 SMART:SM00091 InterPro:IPR001610 MGI:MGI:1277134
            GO:GO:0005634 GO:GO:0005737 GO:GO:0007623 GO:GO:0006351
            GO:GO:0000122 GO:GO:0004871 SMART:SM00086 EMBL:AL607143
            HOVERGEN:HBG008167 KO:K02633 InterPro:IPR022728 Pfam:PF12114
            GeneTree:ENSGT00510000046467 CTD:8863 eggNOG:NOG269786 OMA:FKHVGLT
            EMBL:AF050182 IPI:IPI00469870 PIR:T14260 RefSeq:NP_035197.2
            UniGene:Mm.121361 PDB:4DJ3 PDBsum:4DJ3 ProteinModelPortal:O70361
            SMR:O70361 STRING:O70361 PhosphoSite:O70361 PRIDE:O70361
            Ensembl:ENSMUST00000103204 GeneID:18628 KEGG:mmu:18628
            InParanoid:A2A894 OrthoDB:EOG4Q2DF8 NextBio:294584 Bgee:O70361
            CleanEx:MM_PER3 Genevestigator:O70361 GermOnline:ENSMUSG00000028957
            Uniprot:O70361
        Length = 1113

 Score = 111 (44.1 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 26/87 (29%), Positives = 47/87 (54%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY----YRFLTKGQQW 79
             A P++GYLP +++GTS   Y H +D   +V  H+ ++ K  G   +     RF T+  ++
Sbjct:   287 AVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVL-KYAGHPPFEHSPVRFCTQNGEY 345

Query:    80 IWLQTRFYITYHQWNSKPEFIVCTHRV 106
             + L + +    + W+ K  FI+  H+V
Sbjct:   346 VILDSSWSSFVNPWSRKVSFIIGRHKV 372


>UNIPROTKB|G3N0M5 [details] [associations]
            symbol:PER2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447
            PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610 GO:GO:0006355
            GO:GO:0004871 SMART:SM00086 GeneTree:ENSGT00510000046467
            EMBL:DAAA02009389 Ensembl:ENSBTAT00000063277 OMA:KSHESEI
            Uniprot:G3N0M5
        Length = 542

 Score = 106 (42.4 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 32/114 (28%), Positives = 52/114 (45%)

Query:    21 DLVAPPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY--YRFLTKGQQ 78
             D  A P++GYLP +++ T      H  D   ++  H+ ++Q G     Y   RF  +  +
Sbjct:   347 DQRAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKIVQSGGQPFDYSPLRFRARNGE 406

Query:    79 WIWLQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDS-EEQSNDTG 131
             +I L T +    + W+ K  FI+  HRV   +  L  D    P   EE++   G
Sbjct:   407 YITLDTSWSSFINPWSRKISFIIGRHRV--RLGPLNEDVFSAPPGLEEKAPQPG 458


>MGI|MGI:1195265 [details] [associations]
            symbol:Per2 "period circadian clock 2" species:10090 "Mus
            musculus" [GO:0000122 "negative regulation of transcription from
            RNA polymerase II promoter" evidence=ISO;IDA] [GO:0000988 "protein
            binding transcription factor activity" evidence=ISO] [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA;IPI]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0007165 "signal
            transduction" evidence=IEA] [GO:0007623 "circadian rhythm"
            evidence=IDA] [GO:0048511 "rhythmic process" evidence=IEA]
            InterPro:IPR000014 InterPro:IPR013655 Pfam:PF08447 PROSITE:PS50112
            PROSITE:PS50113 SMART:SM00091 InterPro:IPR001610 MGI:MGI:1195265
            GO:GO:0005829 GO:GO:0005654 GO:GO:0007623 GO:GO:0006351
            GO:GO:0000122 GO:GO:0004871 SMART:SM00086 Reactome:REACT_109335
            Reactome:REACT_24972 eggNOG:NOG253593 HOVERGEN:HBG008167 KO:K02633
            InterPro:IPR022728 Pfam:PF12114 GeneTree:ENSGT00510000046467
            CTD:8864 OrthoDB:EOG48D0TV EMBL:AF036893 EMBL:AF035830
            IPI:IPI00469179 PIR:T09493 RefSeq:NP_035196.2 UniGene:Mm.482463
            PDB:3GDI PDBsum:3GDI ProteinModelPortal:O54943 SMR:O54943
            DIP:DIP-38518N IntAct:O54943 STRING:O54943 PhosphoSite:O54943
            PRIDE:O54943 DNASU:18627 Ensembl:ENSMUST00000069620 GeneID:18627
            KEGG:mmu:18627 InParanoid:O54943 ChiTaRS:PER2
            EvolutionaryTrace:O54943 NextBio:294580 Bgee:O54943 CleanEx:MM_PER2
            Genevestigator:O54943 GermOnline:ENSMUSG00000055866 Uniprot:O54943
        Length = 1257

 Score = 108 (43.1 bits), Expect = 8.8e-05, P = 8.8e-05
 Identities = 30/105 (28%), Positives = 49/105 (46%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY--YRFLTKGQQWIW 81
             A P++GYLP +++ T      H  D   ++  H+ ++Q G     Y   RF T+  ++I 
Sbjct:   348 AVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 407

Query:    82 LQTRFYITYHQWNSKPEFIVCTHRVVSYVNVLRRDNNQVPDSEEQ 126
             L T +    + W+ K  FI+  H+V   V  L  D    P   E+
Sbjct:   408 LDTSWSSFINPWSRKISFIIGRHKV--RVGPLNEDVFAAPPCPEE 450


>UNIPROTKB|G3V8D9 [details] [associations]
            symbol:Per3 "Period homolog 3 (Drosophila), isoform CRA_a"
            species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0004871 "signal transducer activity" evidence=IEA] [GO:0007623
            "circadian rhythm" evidence=IEA] InterPro:IPR000014
            InterPro:IPR013655 Pfam:PF08447 PROSITE:PS50112 SMART:SM00091
            InterPro:IPR001610 RGD:621581 GO:GO:0006355 GO:GO:0004871
            SMART:SM00086 EMBL:CH473968 KO:K02633 InterPro:IPR022728
            Pfam:PF12114 GeneTree:ENSGT00510000046467 CTD:8863
            RefSeq:NP_076468.2 UniGene:Rn.230006 GeneID:78962 KEGG:rno:78962
            NextBio:614392 Ensembl:ENSRNOT00000024932 Uniprot:G3V8D9
        Length = 1115

 Score = 104 (41.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 25/87 (28%), Positives = 46/87 (52%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY----YRFLTKGQQW 79
             A P++G+LP +++GTS   Y H +D   +V  H+ ++ K  G   +     RF T+   +
Sbjct:   288 AVPLLGFLPQDLIGTSILTYLHPEDRPLMVAVHQKVL-KYVGHPPFEHSPIRFCTQNGDY 346

Query:    80 IWLQTRFYITYHQWNSKPEFIVCTHRV 106
             + L + +    + W+ K  FI+  H+V
Sbjct:   347 VILDSSWSSFVNPWSRKVSFIIGRHKV 373


>UNIPROTKB|F5GYD5 [details] [associations]
            symbol:PER2 "Period circadian protein homolog 2"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000014 InterPro:IPR013655
            Pfam:PF08447 PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610
            GO:GO:0006355 GO:GO:0004871 SMART:SM00086 EMBL:AC012485
            HGNC:HGNC:8846 IPI:IPI01012525 ProteinModelPortal:F5GYD5 SMR:F5GYD5
            Ensembl:ENST00000440245 UCSC:uc010znw.1 ArrayExpress:F5GYD5
            Bgee:F5GYD5 Uniprot:F5GYD5
        Length = 483

 Score = 101 (40.6 bits), Expect = 0.00046, P = 0.00046
 Identities = 24/85 (28%), Positives = 42/85 (49%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCY--YRFLTKGQQWIW 81
             A P++GYLP +++ T      H  D   ++  H+ ++Q G     Y   RF  +  ++I 
Sbjct:   350 AVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQSGGQPFDYSPIRFRARNGEYIT 409

Query:    82 LQTRFYITYHQWNSKPEFIVCTHRV 106
             L T +    + W+ K  FI+  H+V
Sbjct:   410 LDTSWSSFINPWSRKISFIIGRHKV 434


>UNIPROTKB|J3QSH9 [details] [associations]
            symbol:PER1 "Period circadian protein homolog 1"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000014 InterPro:IPR013655
            Pfam:PF08447 PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610
            EMBL:CH471108 GO:GO:0006355 GO:GO:0004871 SMART:SM00086
            EMBL:AC129492 UniGene:Hs.445534 HGNC:HGNC:8845 ChiTaRS:PER1
            ProteinModelPortal:J3QSH9 Ensembl:ENST00000581395 Uniprot:J3QSH9
        Length = 572

 Score = 101 (40.6 bits), Expect = 0.00057, P = 0.00057
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTS-CYYRFLTKGQQWIW 81
             A P++GYLP ++LG     + H +D   ++  H+ ++Q  G+       RF  +  +++ 
Sbjct:   377 AAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVT 436

Query:    82 LQTRFYITYHQWNSKPEFIVCTHRV 106
             + T +    H W+ K  F++  H+V
Sbjct:   437 MDTSWAGFVHPWSRKVAFVLGRHKV 461


>MGI|MGI:109205 [details] [associations]
            symbol:Npas1 "neuronal PAS domain protein 1" species:10090
            "Mus musculus" [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004871 "signal transducer activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0007165 "signal transduction" evidence=IEA] [GO:0007610
            "behavior" evidence=IMP] [GO:0046983 "protein dimerization
            activity" evidence=IEA] InterPro:IPR000014 InterPro:IPR011598
            InterPro:IPR013655 InterPro:IPR013767 Pfam:PF00010 Pfam:PF00989
            Pfam:PF08447 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50888
            SMART:SM00091 SMART:SM00353 InterPro:IPR001610 MGI:MGI:109205
            GO:GO:0005634 GO:GO:0003677 GO:GO:0007610 GO:GO:0006351
            GO:GO:0000122 GO:GO:0004871 SMART:SM00086 TIGRFAMs:TIGR00229
            SUPFAM:SSF47459 GeneTree:ENSGT00700000104038 CTD:4861
            eggNOG:NOG287666 HOGENOM:HOG000236298 HOVERGEN:HBG052655 KO:K09098
            OMA:VYPHLQR OrthoDB:EOG4M0F1J EMBL:U77967 IPI:IPI00125487
            RefSeq:NP_032744.1 UniGene:Mm.145821 ProteinModelPortal:P97459
            SMR:P97459 STRING:P97459 PRIDE:P97459 Ensembl:ENSMUST00000002053
            GeneID:18142 KEGG:mmu:18142 InParanoid:P97459 NextBio:293392
            Bgee:P97459 CleanEx:MM_NPAS1 Genevestigator:P97459
            GermOnline:ENSMUSG00000001988 Uniprot:P97459
        Length = 594

 Score = 101 (40.6 bits), Expect = 0.00060, P = 0.00060
 Identities = 27/108 (25%), Positives = 49/108 (45%)

Query:    32 PFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYITYH 91
             P E++G S Y + H  D   +   H  L+ KG+  + YYR+L +   ++WLQ+   +  +
Sbjct:   331 PSELVGRSCYQFVHGQDATRIRQSHLDLLDKGQVVTGYYRWLQRAGGFVWLQSVATVAGN 390

Query:    92 QWNSKPEFIVCTHRVVSYVNVLRR--DNNQVPDSEEQSNDTGPGDSNT 137
               ++    ++    V+S     +   D  Q+P    Q   + PG   T
Sbjct:   391 GKSTGEHHVLWVSHVLSNAEGSQTPLDAFQLPAIVSQEEPSRPGPEPT 438


>UNIPROTKB|J3KTM2 [details] [associations]
            symbol:PER1 "Period circadian protein homolog 1"
            species:9606 "Homo sapiens" [GO:0004871 "signal transducer
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000014 InterPro:IPR013655
            Pfam:PF08447 PROSITE:PS50112 SMART:SM00091 InterPro:IPR001610
            GO:GO:0006355 GO:GO:0004871 SMART:SM00086 EMBL:AC129492
            HGNC:HGNC:8845 ChiTaRS:PER1 ProteinModelPortal:J3KTM2
            Ensembl:ENST00000582719 Uniprot:J3KTM2
        Length = 824

 Score = 101 (40.6 bits), Expect = 0.00090, P = 0.00090
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTS-CYYRFLTKGQQWIW 81
             A P++GYLP ++LG     + H +D   ++  H+ ++Q  G+       RF  +  +++ 
Sbjct:   377 AAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVT 436

Query:    82 LQTRFYITYHQWNSKPEFIVCTHRV 106
             + T +    H W+ K  F++  H+V
Sbjct:   437 MDTSWAGFVHPWSRKVAFVLGRHKV 461


>UNIPROTKB|B4DI49 [details] [associations]
            symbol:PER1 "cDNA FLJ59327, highly similar to Period
            circadian protein 1" species:9606 "Homo sapiens" [GO:0004871
            "signal transducer activity" evidence=IEA] [GO:0006355 "regulation
            of transcription, DNA-dependent" evidence=IEA] InterPro:IPR000014
            InterPro:IPR013655 Pfam:PF08447 PROSITE:PS50112 SMART:SM00091
            InterPro:IPR001610 GO:GO:0006355 GO:GO:0004871 SMART:SM00086
            EMBL:AC129492 UniGene:Hs.445534 HGNC:HGNC:8845 HOGENOM:HOG000231111
            HOVERGEN:HBG008167 ChiTaRS:PER1 EMBL:AK295410 IPI:IPI00910605
            SMR:B4DI49 STRING:B4DI49 Ensembl:ENST00000354903 UCSC:uc010vur.1
            Uniprot:B4DI49
        Length = 859

 Score = 101 (40.6 bits), Expect = 0.00095, P = 0.00095
 Identities = 22/85 (25%), Positives = 44/85 (51%)

Query:    24 APPIIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQ-KGEGTS-CYYRFLTKGQQWIW 81
             A P++GYLP ++LG     + H +D   ++  H+ ++Q  G+       RF  +  +++ 
Sbjct:   361 AAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVT 420

Query:    82 LQTRFYITYHQWNSKPEFIVCTHRV 106
             + T +    H W+ K  F++  H+V
Sbjct:   421 MDTSWAGFVHPWSRKVAFVLGRHKV 445


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       140   0.00091  102 3  11 22  0.42    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  217
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  170 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.73u 0.11s 14.84t   Elapsed:  00:00:01
  Total cpu time:  14.76u 0.11s 14.87t   Elapsed:  00:00:01
  Start:  Thu Aug 15 11:03:43 2013   End:  Thu Aug 15 11:03:44 2013
WARNINGS ISSUED:  1
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with Clk Clk Clk Clock	protein from Drosophila melanogaster	9.4e-42
BLAST match view associations BLAST with F1NGR0 F1NGR0 F1NGR0 Uncharacterized protein	protein from Gallus gallus	2.8e-41
BLAST match view associations BLAST with Clock Clock Clock Circadian locomoter output cycles protein kaput	protein from Nannospalax galili	3.1e-41
BLAST match view associations BLAST with Clock Clock Clock Circadian locomoter output cycles protein kaput	protein from Spalax carmeli	3.1e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Circadian locomoter output cycles protein kaput	protein from Gallus gallus	3.9e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Circadian locomoter output cycles protein kaput	protein from Gallus gallus	3.9e-41
BLAST match view associations BLAST with Clock Clock Clock clock circadian regulator	gene from Rattus norvegicus	4.0e-41
BLAST match view associations BLAST with Clock Clock Clock Circadian locomoter output cycles protein kaput	protein from Rattus norvegicus	4.0e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Circadian locomoter output cycles protein kaput	protein from Gallus gallus	4.2e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Uncharacterized protein	protein from Sus scrofa	5.9e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Uncharacterized protein	protein from Bos taurus	7.9e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Circadian locomoter output cycles protein kaput	protein from Homo sapiens	7.9e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Circadian locomoter output cycles protein kaput	protein from Pongo abelii	7.9e-41
BLAST match view associations BLAST with CLOCK CLOCK CLOCK Uncharacterized protein	protein from Canis lupus familiaris	8.0e-41
BLAST match view associations BLAST with Clock Clock Clock circadian locomotor output cycles kaput	protein from Mus musculus	8.2e-41
BLAST match view associations BLAST with Clock Clock Clock Circadian locomoter output cycles protein kaput	protein from Nannospalax judaei	8.5e-41
BLAST match view associations BLAST with clock clock clock	gene_product from Danio rerio	3.3e-40
BLAST match view associations BLAST with npas2 npas2 npas2 neuronal PAS domain protein 2	gene_product from Danio rerio	9.6e-40
BLAST match view associations BLAST with clock3 clock3 clock3 clock homolog 3 (mouse)	gene_product from Danio rerio	1.1e-39
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Neuronal PAS domain-containing protein 2	protein from Gallus gallus	1.4e-39
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Neuronal PAS domain-containing protein 2	protein from Gallus gallus	1.4e-39
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Uncharacterized protein	protein from Canis lupus familiaris	6.8e-39
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Uncharacterized protein	protein from Bos taurus	1.2e-38
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Uncharacterized protein	protein from Sus scrofa	1.2e-38
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Neuronal PAS domain-containing protein 2	protein from Homo sapiens	1.4e-38
BLAST match view associations BLAST with Npas2 Npas2 Npas2 neuronal PAS domain protein 2	gene from Rattus norvegicus	1.7e-38
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Uncharacterized protein	protein from Canis lupus familiaris	1.7e-38
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Neuronal PAS domain-containing protein 2	protein from Homo sapiens	1.7e-38
BLAST match view associations BLAST with Npas2 Npas2 Npas2 neuronal PAS domain protein 2	protein from Mus musculus	5.9e-38
BLAST match view associations BLAST with NPAS2 NPAS2 NPAS2 Neuronal PAS domain-containing protein 2	protein from Homo sapiens	2.4e-24
BLAST match view associations BLAST with ss ss ss spineless	protein from Drosophila melanogaster	8.1e-14
BLAST match view associations BLAST with epas1b epas1b epas1b endothelial PAS domain protein 1b	gene_product from Danio rerio	4.1e-13
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Uncharacterized protein	protein from Canis lupus familiaris	4.7e-13
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Uncharacterized protein	protein from Sus scrofa	8.9e-13
BLAST match view associations BLAST with arntl2 arntl2 arntl2 aryl hydrocarbon receptor nuclear translocator-like 2	gene_product from Danio rerio	1.2e-12
BLAST match view associations BLAST with Hif1a Hif1a Hif1a hypoxia inducible factor 1, alpha subunit	protein from Mus musculus	1.8e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Homo sapiens	1.9e-12
BLAST match view associations BLAST with Q4R658 Q4R658 Q4R658 Testis cDNA, clone: QtsA-19088, similar to human hypoxia-inducible factor 1, alpha subunit (basichelix-loop-helix transcription factor) (HIF1A),transcript variant 1,	protein from Macaca fascicularis	2.3e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia inducible factor 1, alpha subunit (Basic helix-loop-helix transcription factor)	protein from Bos taurus	2.9e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Bos taurus	2.9e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Bos grunniens	2.9e-12
BLAST match view associations BLAST with Q52RL7 Q52RL7 Q52RL7 Hypoxia inducible factor-1 alpha	protein from Pantholops hodgsonii	2.9e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Uncharacterized protein	protein from Bos taurus	3.1e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Homo sapiens	3.3e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Eospalax baileyi	3.7e-12
BLAST match view associations BLAST with Q7YSE5 Q7YSE5 Q7YSE5 Hypoxia inducible factor 1 alpha subunit	protein from Oryctolagus cuniculus	3.7e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Uncharacterized protein	protein from Sus scrofa	3.7e-12
BLAST match view associations BLAST with hif-1a hif-1a hif-1a Hypoxia inducible factor 1 alpha	protein from Nannospalax judaei	3.7e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Homo sapiens	3.7e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Homo sapiens	3.7e-12
BLAST match view associations BLAST with Q4ZH58 Q4ZH58 Q4ZH58 Hypoxia-inducible factor 1 alpha	protein from Microtus oeconomus	3.7e-12
BLAST match view associations BLAST with arntl1a arntl1a arntl1a aryl hydrocarbon receptor nuclear translocator-like 1a	gene_product from Danio rerio	4.0e-12
BLAST match view associations BLAST with Q64F54 Q64F54 Q64F54 Hypoxia-inducible factor 1 alpha subunit	protein from Ictidomys tridecemlineatus	4.7e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Pongo abelii	5.1e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Homo sapiens	5.1e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Equus caballus	5.1e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Mesocricetus auratus	5.1e-12
BLAST match view associations BLAST with Arntl Arntl Arntl Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Nannospalax galili	5.1e-12
BLAST match view associations BLAST with Arntl Arntl Arntl aryl hydrocarbon receptor nuclear translocator-like	gene from Rattus norvegicus	5.1e-12
BLAST match view associations BLAST with Arntl Arntl Arntl Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Rattus norvegicus	5.1e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Uncharacterized protein	protein from Canis lupus familiaris	5.2e-12
BLAST match view associations BLAST with Arntl Arntl Arntl aryl hydrocarbon receptor nuclear translocator-like	protein from Mus musculus	5.2e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Uncharacterized protein	protein from Canis lupus familiaris	5.6e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Gallus gallus	5.9e-12
BLAST match view associations BLAST with HIF1A HIF1A HIF1A Hypoxia-inducible factor 1-alpha	protein from Gallus gallus	5.9e-12
BLAST match view associations BLAST with Hif1a Hif1a Hif1a hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)	gene from Rattus norvegicus	6.1e-12
BLAST match view associations BLAST with Hif1a Hif1a Hif1a Hypoxia-inducible factor 1-alpha	protein from Rattus norvegicus	6.1e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Gallus gallus	6.7e-12
BLAST match view associations BLAST with arntl1b arntl1b arntl1b aryl hydrocarbon receptor nuclear translocator-like 1b	gene_product from Danio rerio	6.9e-12
BLAST match view associations BLAST with ARNTL ARNTL ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1	protein from Homo sapiens	1.3e-11
BLAST match view associations BLAST with EPAS1 EPAS1 EPAS1 Uncharacterized protein	protein from Sus scrofa	2.2e-11
BLAST match view associations BLAST with EPAS1 EPAS1 EPAS1 Endothelial PAS domain-containing protein 1	protein from Homo sapiens	2.2e-11
BLAST match view associations BLAST with hif1ab hif1ab hif1ab hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) b	gene_product from Danio rerio	2.4e-11
BLAST match view associations BLAST with hif1a hif1a hif1a Hypoxia-inducible factor 1-alpha	protein from Xenopus laevis	2.6e-11
BLAST match view associations BLAST with EPAS1 EPAS1 EPAS1 Uncharacterized protein	protein from Gallus gallus	2.8e-11
BLAST match view associations BLAST with EPAS1 EPAS1 EPAS1 Uncharacterized protein	protein from Canis lupus familiaris	2.9e-11
BLAST match view associations BLAST with EPAS1 EPAS1 EPAS1 Uncharacterized protein	protein from Bos taurus	2.9e-11
BLAST match view associations BLAST with Epas1 Epas1 Epas1 endothelial PAS domain protein 1	protein from Mus musculus	2.9e-11
BLAST match view associations BLAST with Epas1 Epas1 Epas1 endothelial PAS domain protein 1	gene from Rattus norvegicus	2.9e-11
BLAST match view associations BLAST with Epas1 Epas1 Epas1 Endothelial PAS domain-containing protein 1	protein from Rattus norvegicus	2.9e-11
BLAST match view associations BLAST with epas1a epas1a epas1a endothelial PAS domain protein 1a	gene_product from Danio rerio	4.5e-11
BLAST match view associations BLAST with sim sim sim single-minded	protein from Drosophila melanogaster	9.2e-11
BLAST match view associations BLAST with ARNTL2 ARNTL2 ARNTL2 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-10
BLAST match view associations BLAST with ARNTL2 ARNTL2 ARNTL2 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-10
BLAST match view associations BLAST with Arntl2 Arntl2 Arntl2 aryl hydrocarbon receptor nuclear translocator-like 2	gene from Rattus norvegicus	1.8e-10
BLAST match view associations BLAST with hif1al hif1al hif1al hypoxia-inducible factor 1, alpha subunit, like	gene_product from Danio rerio	2.7e-10
BLAST match view associations BLAST with Arntl2 Arntl2 Arntl2 aryl hydrocarbon receptor nuclear translocator-like 2	protein from Mus musculus	3.1e-10
BLAST match view associations BLAST with ARNTL2 ARNTL2 ARNTL2 Aryl hydrocarbon receptor nuclear translocator-like protein 2	protein from Homo sapiens	4.0e-10
BLAST match view associations BLAST with ARNTL2 ARNTL2 ARNTL2 Aryl hydrocarbon receptor nuclear translocator-like protein 2	protein from Homo sapiens	4.5e-10
BLAST match view associations BLAST with cyc cyc cyc cycle	protein from Drosophila melanogaster	9.7e-10
BLAST match view associations BLAST with per per per period	protein from Drosophila melanogaster	1.1e-09
BLAST match view associations BLAST with HIF3A HIF3A HIF3A Uncharacterized protein	protein from Sus scrofa	1.7e-09