RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10825
         (140 letters)



>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator
           1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 109

 Score = 77.4 bits (190), Expect = 4e-20
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 21  DLVAPPIIGYLPFE-VLGTSGYDYYHVDDLDSVVTC--HEALMQKGEGTSCYYRFLTKGQ 77
           D  +    G   +E ++    Y ++     +        + +M +G  +S  YRF+    
Sbjct: 18  DTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDG 77

Query: 78  QWIWLQTRFYITYHQWNSKPEFIVCTHRVVS 108
             +   TR  + Y Q      FI+  H +  
Sbjct: 78  TMLSAHTRCKLCYPQSPDMQPFIMGIHIIDR 108


>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 34.3 bits (77), Expect = 0.001
 Identities = 30/80 (37%), Positives = 49/80 (61%)

Query: 29  GYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRFYI 88
           GY P E+LG S Y++YH  D +++   H+ L  KG+  S  YR L K   ++WL+T+  +
Sbjct: 30  GYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTV 89

Query: 89  TYHQWNSKPEFIVCTHRVVS 108
            Y+  N +P+ I+C + V+S
Sbjct: 90  IYNPRNLQPQCIMCVNYVLS 109


>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2
          {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 114

 Score = 27.1 bits (60), Expect = 0.42
 Identities = 3/29 (10%), Positives = 7/29 (24%)

Query: 24 APPIIGYLPFEVLGTSGYDYYHVDDLDSV 52
             ++   P  +L      Y        +
Sbjct: 37 VEDLLRQPPASLLNVPIAHYLTAASAARL 65


>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase
          {Escherichia coli [TaxId: 562]}
          Length = 253

 Score = 26.3 bits (57), Expect = 1.3
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 34 EVLGTSGYDYYHVD----DLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWI 80
          EVLG +G+D+  +D      D      + +  KG  ++   R  T     I
Sbjct: 31 EVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVII 81


>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1
           domain {Green algae (Chlamydomonas reinhardtii) [TaxId:
           3055]}
          Length = 109

 Score = 25.2 bits (54), Expect = 1.8
 Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 1/82 (1%)

Query: 27  IIGYLPFEVLGTSGYDYYHVDDLDSVVTCHEALMQKGEGTSCYYRFLTKGQQWIWLQTRF 86
           + GY P EVLG +             V      ++KGE  S       K     W     
Sbjct: 28  MTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTV 87

Query: 87  YITYHQWNSKPEFIVCTHRVVS 108
                  + +    V     V+
Sbjct: 88  TPIKTP-DGRVSKFVGVQVDVT 108


>d1slua_ b.16.1.1 (A:) Ecotin, trypsin inhibitor {Escherichia coli
          [TaxId: 562]}
          Length = 133

 Score = 24.3 bits (53), Expect = 3.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 34 EVLGTSGYDYYHVDDLDSVVT 54
          + L   GYDYY  D + S V+
Sbjct: 53 KTLEGWGYDYYVFDKVSSPVS 73


>d1gyoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio gigas,
          di-tetraheme cytochrome c3 [TaxId: 879]}
          Length = 106

 Score = 24.0 bits (51), Expect = 4.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 41 YDYYHVDDLDSVVTCHEALMQKGEGTS 67
          Y  +H +   S   CH+A+  K E T 
Sbjct: 69 YKAWHSESEISCRGCHKAMKAKNEQTG 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 571,912
Number of extensions: 25491
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 8
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)