BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10826
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+Q EI +G + A ++D + YK G+Y+H GE GGHA++IIGWGVE+ YWL N
Sbjct: 162 IQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIAN 221
Query: 61 SWGELWGDGGLFKIRRGTDESRIESFQVSAGRVD 94
SW E WG+ G F+I RG DE IES +V+AGR++
Sbjct: 222 SWNEDWGENGYFRIVRGRDECSIES-EVTAGRIN 254
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A + D ++YK GVYQH GEM GGHA++I+GWGVE+G YWL N
Sbjct: 223 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVAN 282
Query: 61 SWGELWGDGGLFKIRRGTDESRIESFQVSAG 91
SW WGD G FKI RG D IES +V AG
Sbjct: 283 SWNTDWGDNGFFKILRGQDHCGIES-EVVAG 312
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A + D ++YK GVYQH GEM GGHA++I+GWGVE+G YWL N
Sbjct: 166 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVAN 225
Query: 61 SWGELWGDGGLFKIRRGTDESRIESFQVSAGRVDRDR 97
SW WGD G FKI RG D IES +V AG D+
Sbjct: 226 SWNTDWGDNGFFKILRGQDHCGIES-EVVAGIPRTDQ 261
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A + D ++YK GVYQH GEM GGHA++I+GWGVE+G YWL N
Sbjct: 161 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVAN 220
Query: 61 SWGELWGDGGLFKIRRGTDESRIESFQVSAGRVDRDR 97
SW WGD G FKI RG D IES +V AG D+
Sbjct: 221 SWNTDWGDNGFFKILRGQDHCGIES-EVVAGIPRTDQ 256
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A + D ++YK GVYQH GEM GGHA++I+GWGVE+G YWL N
Sbjct: 160 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVAN 219
Query: 61 SWGELWGDGGLFKIRRGTDESRIESFQVSAG 91
SW WGD G FKI RG D IES +V AG
Sbjct: 220 SWNTDWGDNGFFKILRGQDHCGIES-EVVAG 249
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A + D ++YK GVYQH GEM GGHA++I+GWGVE+G YWL N
Sbjct: 162 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVAN 221
Query: 61 SWGELWGDGGLFKIRRGTDESRIESFQVSAG 91
SW WGD G FKI RG D IES +V AG
Sbjct: 222 SWNTDWGDNGFFKILRGQDHCGIES-EVVAG 251
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A + D ++YK GVYQH GEM GGHA++I+GWGVE+G YWL N
Sbjct: 111 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVAN 170
Query: 61 SWGELWGDGGLFKIRRGTDESRIESFQVSAG 91
SW WGD G FKI RG D IES +V AG
Sbjct: 171 SWNTDWGDNGFFKILRGQDHCGIES-EVVAG 200
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 55/85 (64%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A + D ++YK GVYQH GE+ GGHA++I+GWGVE+G YWL N
Sbjct: 160 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVAN 219
Query: 61 SWGELWGDGGLFKIRRGTDESRIES 85
SW WGD G FKI RG D IES
Sbjct: 220 SWNTDWGDNGFFKILRGQDHCGIES 244
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 55/85 (64%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A + D ++YK GVYQH GE+ GGHA++I+GWGVE+G YWL N
Sbjct: 112 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGN 171
Query: 61 SWGELWGDGGLFKIRRGTDESRIES 85
SW WGD G FKI RG D IES
Sbjct: 172 SWNTDWGDNGFFKILRGQDHCGIES 196
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 55/85 (64%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A + D ++YK GVYQH GE+ GGHA++I+GWGVE+G YWL N
Sbjct: 160 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGN 219
Query: 61 SWGELWGDGGLFKIRRGTDESRIES 85
SW WGD G FKI RG D IES
Sbjct: 220 SWNTDWGDNGFFKILRGQDHCGIES 244
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 54/85 (63%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A D + YK GVY+H G++ GGHA++I+GWG+E+GV YWL N
Sbjct: 222 IMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVAN 281
Query: 61 SWGELWGDGGLFKIRRGTDESRIES 85
SW WGD G FKI RG + IES
Sbjct: 282 SWNADWGDNGFFKILRGENHCGIES 306
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 54/85 (63%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A D + YK GVY+H G++ GGHA++I+GWG+E+GV YWL N
Sbjct: 166 IMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVAN 225
Query: 61 SWGELWGDGGLFKIRRGTDESRIES 85
SW WGD G FKI RG + IES
Sbjct: 226 SWNADWGDNGFFKILRGENHCGIES 250
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 54/85 (63%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A D + YK GVY+H G++ GGHA++I+GWG+E+GV YWL N
Sbjct: 160 IMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVAN 219
Query: 61 SWGELWGDGGLFKIRRGTDESRIES 85
SW WGD G FKI RG + IES
Sbjct: 220 SWNADWGDNGFFKILRGENHCGIES 244
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 10/104 (9%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHT-------VGEMSGGHAVKIIGWGVED-- 51
M+LE+ H G + A E + D + YKKG+Y HT E++ HAV ++G+G +
Sbjct: 336 MKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTN-HAVLLVGYGTDSAS 394
Query: 52 GVKYWLCVNSWGELWGDGGLFKIRRGTDESRIESFQVSAGRVDR 95
G+ YW+ NSWG WG+ G F+IRRGTDE IES V+A + +
Sbjct: 395 GMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPK 438
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%)
Query: 4 EIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWG 63
E+F G A + ++D I Y GVY H G+ GGHAV+++GWG +GV YW NSW
Sbjct: 224 ELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWN 283
Query: 64 ELWGDGGLFKIRRGTDESRIE 84
WG G F IRRG+ E IE
Sbjct: 284 TEWGMDGYFLIRRGSSECGIE 304
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%)
Query: 4 EIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWG 63
E+F G A + ++D I Y GVY H G+ GGHAV+++GWG +GV YW NSW
Sbjct: 246 ELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWN 305
Query: 64 ELWGDGGLFKIRRGTDESRIE 84
WG G F IRRG+ E IE
Sbjct: 306 TEWGMDGYFLIRRGSSECGIE 326
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%)
Query: 4 EIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWG 63
E+F G A + ++D I Y GVY H G+ GGHAV+++GWG +GV YW NSW
Sbjct: 223 ELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWN 282
Query: 64 ELWGDGGLFKIRRGTDESRIE 84
WG G F IRRG+ E IE
Sbjct: 283 TEWGMDGYFLIRRGSSECGIE 303
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 10/104 (9%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHT-------VGEMSGGHAVKIIGWGVED-- 51
M+LE+ G + A E H D + Y G+Y HT E++ HAV ++G+G +
Sbjct: 335 MKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTN-HAVLLVGYGKDPVT 393
Query: 52 GVKYWLCVNSWGELWGDGGLFKIRRGTDESRIESFQVSAGRVDR 95
G+ YW+ NSWG WG+ G F+IRRGTDE IES ++A + +
Sbjct: 394 GLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAIPIPK 437
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 8 FGSIVAAIEAHQDLIIYKKGVYQHTVGEMSG---GHAVKIIGWGVEDGVKYWLCVNSWGE 64
+ + A E D ++Y+KG+Y T + HAV +G+G E+G+ YW+ NSWG
Sbjct: 131 YNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGP 190
Query: 65 LWGDGGLFKIRRGTD 79
WG G F I RG +
Sbjct: 191 QWGMNGYFLIERGKN 205
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
M EI+ G I I A + L Y G+Y H V + GWG+ DG +YW+ N
Sbjct: 176 MMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRN 235
Query: 61 SWGELWGDGGLFKI 74
SWGE WG+ G +I
Sbjct: 236 SWGEPWGERGWLRI 249
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor
Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 40 HAVKIIGWGVED--GVKYWLCVNSWGELWGDGGLFKIRRGTDESRIESFQVSAGRVDR 95
HAV ++G+G + G+ YW+ NSWG WG+ G F+IRRGTDE IES V+A + +
Sbjct: 11 HAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPK 68
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
M EI+ G I I A + L Y G+Y H V + GWG+ DG +YW+ N
Sbjct: 141 MMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRN 200
Query: 61 SWGELWGDGGLFKIRRGT 78
SWGE WG+ G +I T
Sbjct: 201 SWGEPWGERGWLRIVTST 218
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 9 GSIVAAIEAHQDLIIYKKGVYQHTVGEMSG-GHAVKIIGWGVEDGVKYWLCVNSWGELWG 67
G + A +A Y GVY + E + HAV I+G+G E+G YWL NSWG+ WG
Sbjct: 246 GPVAVAFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWG 305
Query: 68 DGGLFKIRRGTD 79
G FKI R +
Sbjct: 306 LDGYFKIARNAN 317
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 9 GSIVAAIEAHQDLIIYKKGVYQ-HTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWG 67
G A++ D ++Y+ G+YQ T + HAV +G+G + G YW+ NSWG WG
Sbjct: 221 GPAAVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWG 280
Query: 68 DGGLFKIRR 76
+ G ++ R
Sbjct: 281 ERGYIRMVR 289
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE----DGVKYWLCVNSW 62
G I AI+A H+ + YK+G+Y + H V ++G+G E DG KYWL NSW
Sbjct: 222 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSW 281
Query: 63 GELWGDGGLFKIRR 76
GE WG GG K+ +
Sbjct: 282 GEEWGMGGYVKMAK 295
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE----DGVKYWLCVNSW 62
G I AI+A H+ + YK+G+Y + H V ++G+G E D KYWL NSW
Sbjct: 168 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSW 227
Query: 63 GELWGDGGLFKIRR 76
GE WG GG K+ +
Sbjct: 228 GEEWGMGGYVKMAK 241
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE----DGVKYWLCVNSW 62
G I AI+A H+ + YK+G+Y + H V ++G+G E D KYWL NSW
Sbjct: 226 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSW 285
Query: 63 GELWGDGGLFKIRR 76
GE WG GG K+ +
Sbjct: 286 GEEWGMGGYVKMAK 299
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE----DGVKYWLCVNSW 62
G I AI+A H+ + YK+G+Y + H V ++G+G E D KYWL NSW
Sbjct: 131 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSW 190
Query: 63 GELWGDGGLFKIRR 76
GE WG GG K+ +
Sbjct: 191 GEEWGMGGYVKMAK 204
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE----DGVKYWLCVNSW 62
G I AI+A H+ + YK+G+Y + H V ++G+G E D KYWL NSW
Sbjct: 131 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSW 190
Query: 63 GELWGDGGLFKIRR 76
GE WG GG K+ +
Sbjct: 191 GEEWGMGGYVKMAK 204
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE----DGVKYWLCVNSW 62
G I AI+A H+ + YK+G+Y + H V ++G+G E D KYWL NSW
Sbjct: 130 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSW 189
Query: 63 GELWGDGGLFKIRR 76
GE WG GG K+ +
Sbjct: 190 GEEWGMGGYVKMAK 203
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE----DGVKYWLCVNSW 62
G I AI+A H+ + YK+G+Y + H V ++G+G E D KYWL NSW
Sbjct: 130 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSW 189
Query: 63 GELWGDGGLFKIRR 76
GE WG GG K+ +
Sbjct: 190 GEEWGMGGYVKMAK 203
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE----DGVKYWLCVNSW 62
G I AI+A H+ + YK+G+Y + H V ++G+G E D KYWL NSW
Sbjct: 130 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSW 189
Query: 63 GELWGDGGLFKIRR 76
GE WG GG K+ +
Sbjct: 190 GEEWGMGGYVKMAK 203
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE----DGVKYWLCVNSW 62
G I AI+A H+ + YK+G+Y + H V ++G+G E D KYWL NSW
Sbjct: 130 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSW 189
Query: 63 GELWGDGGLFKIRR 76
GE WG GG K+ +
Sbjct: 190 GEEWGMGGYVKMAK 203
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE----DGVKYWLCVNSW 62
G I AI+A H+ + YK+G+Y + H V ++G+G E D KYWL NSW
Sbjct: 130 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDDNKYWLVKNSW 189
Query: 63 GELWGDGGLFKIRR 76
GE WG GG K+ +
Sbjct: 190 GEEWGMGGYVKMAK 203
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 9 GSIVAAIEAHQDLIIYKKGV-YQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWG 67
G + AI+A +L Y G+ Y T + H V ++G+G ++G YW+ NSWG WG
Sbjct: 244 GPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWG 303
Query: 68 DGGLFKIRR 76
+ G ++ R
Sbjct: 304 ESGYWRQVR 312
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWG-VEDGVKYWLCVNSWGEL 65
G I AI+A H+ + YK+G+Y S HA+ ++G+G + + KYWL NSWGE
Sbjct: 130 GPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKYWLVKNSWGEE 189
Query: 66 WGDGGLFKIRR 76
WG GG K+ +
Sbjct: 190 WGMGGYVKMAK 200
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 11 IVAAIEAHQDLIIYKKGVYQ--HTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGD 68
I +I+A +D Y G+Y + H V I+G+G EDGV YW+ NSWGE WG
Sbjct: 138 ISVSIDA-KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGI 196
Query: 69 GGLFKIRRGT 78
G +I+R T
Sbjct: 197 DGYIRIQRNT 206
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 1 MQLEIFHFGSIVAAIEAH-QDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVEDGVKYWLC 58
++ + G + AI+A Y KGVY + + HAV +G+G G K+W+
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHWII 180
Query: 59 VNSWGELWGDGGLFKIRRGTDES 81
NSWGE WG GG K+ R + +
Sbjct: 181 KNSWGENWGMGGYIKMARNKNNA 203
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+Q + + VA A + Y G++ G + HAV I+G+G E G+ YW+ N
Sbjct: 124 LQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCG-TAVDHAVTIVGYGTEGGIDYWIVKN 182
Query: 61 SWGELWGDGGLFKIRR 76
SWG WG+ G +I+R
Sbjct: 183 SWGTTWGEEGYMRIQR 198
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+Q + + VA A + Y G++ G + HAV I+G+G E G+ YW+ N
Sbjct: 124 LQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCG-TAVDHAVTIVGYGTEGGIDYWIVKN 182
Query: 61 SWGELWGDGGLFKIRR 76
SWG WG+ G +I+R
Sbjct: 183 SWGTTWGEEGYMRIQR 198
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+Q + + V A +D +Y+ G++ + +S HA+ ++G+G E+ +W+ N
Sbjct: 123 LQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSC-NISANHALTVVGYGTENDKDFWIVKN 181
Query: 61 SWGELWGDGGLFKIRRGTDE-------SRIESFQVSAG 91
SWG+ WG+ G + R + +R S+ V G
Sbjct: 182 SWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKKG 219
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 1 MQLEIFHFGSIVAAIEAH-QDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVEDGVKYWLC 58
++ + G + AI+A Y KGVY + + HAV +G+G++ G K+W+
Sbjct: 120 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWII 179
Query: 59 VNSWGELWGDGGLFKIRRGTDES 81
NSWGE WG+ G + R + +
Sbjct: 180 KNSWGENWGNKGYILMARNKNNA 202
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 1 MQLEIFHFGSIVAAIEAH-QDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVEDGVKYWLC 58
++ + G + AI+A Y KGVY + + HAV +G+G++ G K+W+
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWII 180
Query: 59 VNSWGELWGDGGLFKIRRGTDES 81
NSWGE WG+ G + R + +
Sbjct: 181 KNSWGENWGNKGYILMARNKNNA 203
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 1 MQLEIFHFGSIVAAIEAH-QDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVEDGVKYWLC 58
++ + G + AI+A Y KGVY + + HAV +G+G++ G K+W+
Sbjct: 220 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWII 279
Query: 59 VNSWGELWGDGGLFKIRRGTDES 81
NSWGE WG+ G + R + +
Sbjct: 280 KNSWGENWGNKGYILMARNKNNA 302
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 1 MQLEIFHFGSIVAAIEAH-QDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVEDGVKYWLC 58
++ + G + AI+A Y KGVY + + HAV +G+G++ G K+W+
Sbjct: 123 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWII 182
Query: 59 VNSWGELWGDGGLFKIRRGTDES 81
NSWGE WG+ G + R + +
Sbjct: 183 KNSWGENWGNKGYILMARNKNNA 205
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 1 MQLEIFHFGSIVAAIEAH-QDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVEDGVKYWLC 58
++ + G + AI+A Y KGVY + + HAV +G+G++ G K+W+
Sbjct: 119 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWII 178
Query: 59 VNSWGELWGDGGLFKIRRGTDES 81
NSWGE WG+ G + R + +
Sbjct: 179 KNSWGENWGNKGYILMARNKNNA 201
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 1 MQLEIFHFGSIVAAIEAH-QDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVEDGVKYWLC 58
++ + G + AI+A Y KGVY + HAV +G+G++ G K+W+
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHWII 180
Query: 59 VNSWGELWGDGGLFKIRRGTDES 81
NSWGE WG+ G + R + +
Sbjct: 181 KNSWGESWGNKGYILMARNKNNA 203
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 10/82 (12%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYK---KGVYQHTVGEMSGGHAVKIIGWGV---EDGVK 54
++ E+ + GS++A I+A ++++ Y+ K V Q+ G+ + HAV I+G+G +G K
Sbjct: 159 IKTEVMNKGSVIAYIKA-ENVMGYEFSGKKV-QNLCGDDTADHAVNIVGYGNYVNSEGEK 216
Query: 55 --YWLCVNSWGELWGDGGLFKI 74
YW+ NSWG WGD G FK+
Sbjct: 217 KSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 11 IVAAIEAH-QDLIIYKKGVYQHTVG-EMSGGHAVKIIGWGVE-DGVKYWLCVNSWGELWG 67
+ AI+A D Y +GV+ + G E+ H V I+G+G DG KYW NSWG WG
Sbjct: 133 VSVAIDAGGSDFQFYSEGVFTGSCGTELD--HGVAIVGYGTTIDGTKYWTVKNSWGPEWG 190
Query: 68 DGGLFKIRRG 77
+ G ++ RG
Sbjct: 191 EKGYIRMERG 200
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE----DGVKYWLCVNSW 62
G I A++A H YK G+Y + + H V ++G+G E D KYWL NSW
Sbjct: 131 GPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSW 190
Query: 63 GELWGDGGLFKIRR 76
G WG G KI +
Sbjct: 191 GPEWGSNGYVKIAK 204
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE----DGVKYWLCVNSW 62
G I A++A H YK G+Y + + H V ++G+G E D KYWL NSW
Sbjct: 131 GPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSW 190
Query: 63 GELWGDGGLFKIRR 76
G WG G KI +
Sbjct: 191 GPEWGSNGYVKIAK 204
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 10 SIVAAIEAHQDLIIYK----KGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGEL 65
+ +A I +DL ++ + + QH G HAV I+G+G G YW+ NSW
Sbjct: 137 TAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGSTQGDDYWIVRNSWDTT 196
Query: 66 WGDGGLFKIRRGTDESRIESF 86
WGD G + G + IE +
Sbjct: 197 WGDSGYGYFQAGNNLMMIEQY 217
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59
++ + + G + ++A H +Y+ GVY + H V ++G+G +G +YWL
Sbjct: 124 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVK 183
Query: 60 NSWGELWGDGGLFKIRR 76
NSWG +G+ G ++ R
Sbjct: 184 NSWGHNFGEKGYIRMAR 200
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59
++ + + G + ++A H +Y+ GVY + H V ++G+G +G +YWL
Sbjct: 124 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVK 183
Query: 60 NSWGELWGDGGLFKIRR 76
NSWG +G+ G ++ R
Sbjct: 184 NSWGHNFGEKGYIRMAR 200
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59
++ + + G + ++A H +Y+ GVY + H V ++G+G +G +YWL
Sbjct: 127 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVK 186
Query: 60 NSWGELWGDGGLFKIRR 76
NSWG +G+ G ++ R
Sbjct: 187 NSWGHNFGEEGYIRMAR 203
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59
++ + + G + ++A H +Y+ GVY + H V ++G+G +G +YWL
Sbjct: 125 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVK 184
Query: 60 NSWGELWGDGGLFKIRR 76
NSWG +G+ G ++ R
Sbjct: 185 NSWGHNFGEEGYIRMAR 201
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59
++ + + G + ++A H +Y+ GVY + H V ++G+G +G +YWL
Sbjct: 124 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVK 183
Query: 60 NSWGELWGDGGLFKIRR 76
NSWG +G+ G ++ R
Sbjct: 184 NSWGHNFGEEGYIRMAR 200
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59
++ + + G + ++A H +Y+ GVY + H V ++G+G +G +YWL
Sbjct: 124 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVK 183
Query: 60 NSWGELWGDGGLFKIRR 76
NSWG +G+ G ++ R
Sbjct: 184 NSWGHNFGEEGYIRMAR 200
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59
++ + + G + ++A H +Y+ GVY + H V ++G+G +G +YWL
Sbjct: 124 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVK 183
Query: 60 NSWGELWGDGGLFKIRR 76
NSWG +G+ G ++ R
Sbjct: 184 NSWGHNFGEEGYIRMAR 200
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59
++ + + G + ++A H +Y+ GVY + H V ++G+G +G +YWL
Sbjct: 124 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVK 183
Query: 60 NSWGELWGDGGLFKIRR 76
NSWG +G+ G ++ R
Sbjct: 184 NSWGHNFGEEGYIRMAR 200
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 1 MQLEIFHFGSIVAAIEAH-QDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVEDGVKYWLC 58
++ + G + AI+A Y GVY + HAV +G+G++ G K+W+
Sbjct: 121 LKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHWII 180
Query: 59 VNSWGELWGDGGLFKIRRGTDES 81
NSWGE WG+ G + R + +
Sbjct: 181 KNSWGESWGNAGYILMARNKNNA 203
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59
++ + + G + ++A H +Y+ GVY + H V ++G+G +G +YWL
Sbjct: 125 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVK 184
Query: 60 NSWGELWGDGGLFKIRR 76
NSWG +G+ G ++ R
Sbjct: 185 NSWGHNFGEEGYIRMAR 201
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59
++ + + G + ++A H +Y+ GVY + H V ++G+G +G +YWL
Sbjct: 125 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVK 184
Query: 60 NSWGELWGDGGLFKIRR 76
NSWG +G+ G ++ R
Sbjct: 185 NSWGHNFGEEGYIRMAR 201
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59
++ + + G + ++A H +Y+ GVY + H V ++G+G +G +YWL
Sbjct: 126 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVK 185
Query: 60 NSWGELWGDGGLFKIRR 76
NSWG +G+ G ++ R
Sbjct: 186 NSWGHNFGEEGYIRMAR 202
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWG 67
G + ++A H +Y+ GVY + H V ++G+G +G +YWL NSWG +G
Sbjct: 230 GPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFG 289
Query: 68 DGGLFKIRR 76
+ G ++ R
Sbjct: 290 EEGYIRMAR 298
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59
++ + + G + ++A H +Y+ GVY + H V ++G+G +G +YWL
Sbjct: 124 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVK 183
Query: 60 NSWGELWGDGGLFKIRR 76
NSWG +G+ G ++ R
Sbjct: 184 NSWGHNFGEEGYIRMAR 200
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 10/82 (12%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYK---KGVYQHTVGEMSGGHAVKIIGWGV---EDGVK 54
++ E+ + GS++A I+A ++++ Y+ K V ++ G+ + HAV I+G+G +G K
Sbjct: 160 IKTEVMNKGSVIAYIKA-ENVMGYEFSGKKV-KNLCGDDTADHAVNIVGYGNYVNSEGEK 217
Query: 55 --YWLCVNSWGELWGDGGLFKI 74
YW+ NSWG WGD G FK+
Sbjct: 218 KSYWIVRNSWGPYWGDEGYFKV 239
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+Q + + VA A Y G++ G + HAV I+G+G E G+ YW+ N
Sbjct: 124 LQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCG-TAIDHAVTIVGYGTEGGIDYWIVKN 182
Query: 61 SWGELWGDGGLFKIRR 76
SW WG+ G +I R
Sbjct: 183 SWDTTWGEEGYMRILR 198
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 11 IVAAIEAH-QDLIIYKKGVYQHTVG-EMSGGHAVKIIGWGV-EDGVKYWLCVNSWGELWG 67
+ A+EA + + Y +GV+ G E+ H V ++G+GV EDG YW NSWG WG
Sbjct: 138 VSVAVEASGKAFMFYSEGVFTGECGTELD--HGVAVVGYGVAEDGKAYWTVKNSWGPSWG 195
Query: 68 DGGLFKIRRGTDES 81
+ G ++ + + S
Sbjct: 196 EQGYIRVEKDSGAS 209
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 19 QDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGT 78
+ +YK GV+ G HAV +G+G DG Y + NSWG WG+ G +++R +
Sbjct: 139 KPFQLYKSGVFDGPCGTKLD-HAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQS 197
Query: 79 DESR 82
S+
Sbjct: 198 GNSQ 201
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+Q + + VA A Y G++ G HA+ I+G+G E GV YW+ N
Sbjct: 124 LQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVD-HAIVIVGYGTEGGVDYWIVKN 182
Query: 61 SWGELWGDGGLFKIRR 76
SW WG+ G +I R
Sbjct: 183 SWDTTWGEEGYMRILR 198
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 7 HFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVED----------GVKYW 56
+ G I +I A D Y+ G Y G + HAV ++G+G++D Y+
Sbjct: 144 YLGPISISIAASDDFAFYRGGFYDGECG-AAPNHAVILVGYGMKDIYNEDTGRMEKFYYY 202
Query: 57 LCVNSWGELWGDGGLFKIRRGTDES 81
+ NSWG WG+GG + TDE+
Sbjct: 203 IIKNSWGSDWGEGGYINLE--TDEN 225
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 SIVAAIEAHQDLIIYK----KGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGEL 65
S +A I +DL ++ + + Q G HAV I+G+ GV YW+ NSW
Sbjct: 216 SAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTN 275
Query: 66 WGDGGLFKIRRGTDESRIESF 86
WGD G D IE +
Sbjct: 276 WGDNGYGYFAANIDLMMIEEY 296
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 24 YKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGTDES 81
Y G++ G H V I+G+G + G YW+ NSWG+ WG+ G + R S
Sbjct: 143 YSSGIFTGPCGTAQN-HGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASS 199
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 8 FGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVK----------YWL 57
G I ++ D YK+G++ G+ HAV ++G+G+++ V Y++
Sbjct: 142 LGPISISVAVSDDFAFYKEGIFDGECGDQLN-HAVMLVGFGMKEIVNPLTKKGEKHYYYI 200
Query: 58 CVNSWGELWGDGGLFKIRRGTDES 81
NSWG+ WG+ G I TDES
Sbjct: 201 IKNSWGQQWGERGFINIE--TDES 222
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 8 FGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVK----------YWL 57
G I ++ D YK+G++ G+ HAV ++G+G+++ V Y++
Sbjct: 143 LGPISISVAVSDDFAFYKEGIFDGECGDQLN-HAVMLVGFGMKEIVNPLTKKGEKHYYYI 201
Query: 58 CVNSWGELWGDGGLFKIRRGTDES 81
NSWG+ WG+ G I TDES
Sbjct: 202 IKNSWGQQWGERGFINIE--TDES 223
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 SIVAAIEAHQDLIIYK----KGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGEL 65
S +A I +DL ++ + + Q G HAV I+G+ GV YW+ NSW
Sbjct: 136 SAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTN 195
Query: 66 WGDGGLFKIRRGTDESRIESF 86
WGD G D IE +
Sbjct: 196 WGDNGYGYFAANIDLMMIEEY 216
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 SIVAAIEAHQDLIIYK----KGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGEL 65
S +A I +DL ++ + + Q G HAV I+G+ GV YW+ NSW
Sbjct: 136 SAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTN 195
Query: 66 WGDGGLFKIRRGTDESRIESF 86
WGD G D IE +
Sbjct: 196 WGDNGYGYFAANIDLMMIEEY 216
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 10 SIVAAIEAHQDLIIYK----KGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGEL 65
S +A I +DL ++ + + Q G HAV I+G+ GV YW+ NSW
Sbjct: 136 SAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTN 195
Query: 66 WGDGGLFKIRRGTDESRIESF 86
WGD G D IE +
Sbjct: 196 WGDNGYGYFAANIDLMMIEEY 216
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 2 QLEIFHFGSIVAAIE----------AHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVED 51
Q++ ++ G+++ +I A +D +Y+ G++ G HAV +G+G
Sbjct: 112 QVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVD-HAVAAVGYGPN- 169
Query: 52 GVKYWLCVNSWGELWGDGGLFKIRRGTDES 81
Y L NSWG WG+ G +I+RGT S
Sbjct: 170 ---YILIKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 2 QLEIFHFGSIVAAIE----------AHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVED 51
Q++ ++ G+++ +I A +D +Y+ G++ G HAV +G+G
Sbjct: 112 QVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVD-HAVAAVGYGPN- 169
Query: 52 GVKYWLCVNSWGELWGDGGLFKIRRGTDES 81
Y L NSWG WG+ G +I+RGT S
Sbjct: 170 ---YILIKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 2 QLEIFHFGSIVAAIE----------AHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVED 51
Q++ ++ G+++ +I A +D +Y+ G++ G HAV +G+G
Sbjct: 112 QVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVD-HAVAAVGYGPN- 169
Query: 52 GVKYWLCVNSWGELWGDGGLFKIRRGTDES 81
Y L NSWG WG+ G +I+RGT S
Sbjct: 170 ---YILIKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 2 QLEIFHFGSIVAAIE----------AHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVED 51
Q++ ++ G+++ +I A +D +Y+ G++ G HAV +G+G
Sbjct: 263 QVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD-HAVAAVGYGP-- 319
Query: 52 GVKYWLCVNSWGELWGDGGLFKIRRGTDES 81
Y L NSWG WG+ G +I+RGT S
Sbjct: 320 --NYILIRNSWGTGWGENGYIRIKRGTGNS 347
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 2 QLEIFHFGSIVAAIE----------AHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVED 51
Q++ ++ G+++ +I A +D +Y+ G++ G HAV +G+G
Sbjct: 112 QVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD-HAVAAVGYGPN- 169
Query: 52 GVKYWLCVNSWGELWGDGGLFKIRRGTDES 81
Y L NSWG WG+ G +I+RGT S
Sbjct: 170 ---YILIKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 2 QLEIFHFGSIVAAIE----------AHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVED 51
Q++ ++ G+++ +I A +D +Y+ G++ G HAV +G+G
Sbjct: 112 QVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD-HAVAAVGYGPN- 169
Query: 52 GVKYWLCVNSWGELWGDGGLFKIRRGTDES 81
Y L NSWG WG+ G +I+RGT S
Sbjct: 170 ---YILIKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 2 QLEIFHFGSIVAAIE----------AHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVED 51
Q++ ++ G+++ +I A +D +Y+ G++ G HAV +G+G
Sbjct: 112 QVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD-HAVAAVGYGPN- 169
Query: 52 GVKYWLCVNSWGELWGDGGLFKIRRGTDES 81
Y L NSWG WG+ G +I+RGT S
Sbjct: 170 ---YILIKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 40 HAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGTDESRIESFQVSA 90
HAV ++G+G V +W NSWG WG+ G + + RG+ + + SA
Sbjct: 161 HAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSA 211
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 9 GSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGD 68
G + A++A + Y GV V E H V ++G+ V YW+ NSW WG+
Sbjct: 133 GPVAVAVDA-SSWMTYTGGVMTSCVSEQLD-HGVLLVGYNDSAAVPYWIIKNSWTTQWGE 190
Query: 69 GGLFKIRRGTDESRIESFQVSA 90
G +I +G+++ ++ SA
Sbjct: 191 EGYIRIAKGSNQCLVKEEASSA 212
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 9 GSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGD 68
G + A++A + Y GV V E H V ++G+ V YW+ NSW WG+
Sbjct: 133 GPVAVAVDA-SSWMTYTGGVMTSCVSEALD-HGVLLVGYNDSAAVPYWIIKNSWTTQWGE 190
Query: 69 GGLFKIRRGTDESRIESFQVSA 90
G +I +G+++ ++ SA
Sbjct: 191 EGYIRIAKGSNQCLVKEEASSA 212
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 9 GSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGD 68
G + A++A + Y G+ E H V ++G+ YW+ NSW +WG+
Sbjct: 133 GPLAIAVDA-TSFMDYNGGILTSCTSEQLD-HGVLLVGYNDASNPPYWIIKNSWSNMWGE 190
Query: 69 GGLFKIRRGTDESRIESFQVSA 90
G +I +GT++ + SA
Sbjct: 191 DGYIRIEKGTNQCLMNQAVSSA 212
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 9 GSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGD 68
G + A++A + Y GV V E H V ++G+ V YW+ NSW WG+
Sbjct: 133 GPVAVAVDA-SSWMTYTGGVMTSCVSEQLD-HGVLLVGYNDGAAVPYWIIKNSWTTQWGE 190
Query: 69 GGLFKIRRGTDESRIESFQVSA 90
G +I +G+++ ++ SA
Sbjct: 191 EGYIRIAKGSNQCLVKEEASSA 212
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 9 GSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGD 68
G + A++A + Y GV V E H V ++G+ V YW+ NSW WG+
Sbjct: 133 GPVAVAVDA-SSWMTYTGGVMTSCVSEQLD-HGVLLVGYNDGAAVPYWIIKNSWTTQWGE 190
Query: 69 GGLFKIRRGTDESRIESFQVSA 90
G +I +G+++ ++ SA
Sbjct: 191 EGYIRIAKGSNQCLVKEEASSA 212
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 23 IYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGTDESR 82
YK G+Y+ G + HAV +G+G Y L NSWG WG+ G +I+R + S+
Sbjct: 143 FYKGGIYEGPCGTNTD-HAVTAVGYGKT----YLLLKNSWGPNWGEKGYIRIKRASGRSK 197
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHT 32
M+LE+ H G + A E + D + YKKG+Y HT
Sbjct: 130 MKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT 161
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 24 YKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGTDESR 82
Y+ G++ G S HAV +G+G + Y L NSWG WG+GG +I+RG+ +
Sbjct: 144 YRGGIFAGPCG-TSIDHAVAAVGYGND----YILIKNSWGTGWGEGGYIRIKRGSGNPQ 197
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 10 SIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDG 69
S+VA + + YK G++ G H V I+G+G + YW+ NSWG WG+
Sbjct: 128 SVVAIDASSKQFQHYKGGIFTGPCGTKLN-HGVVIVGYGKD----YWIVRNSWGRHWGEQ 182
Query: 70 GLFKIRR 76
G +++R
Sbjct: 183 GYTRMKR 189
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 10 SIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDG 69
S+VA + + YK G++ G H V I+G+ + YW+ NSWG WG+
Sbjct: 128 SVVAIDASSKQFQHYKSGIFSGPCGTKLN-HGVVIVGYWKD----YWIVRNSWGRYWGEQ 182
Query: 70 GLFKIRR 76
G +++R
Sbjct: 183 GYIRMKR 189
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 5 IFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGE 64
I H V A +D YK G+++ + G HAV +G+G G Y L NSWG
Sbjct: 125 IAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVD-HAVTAVGYGKSGGKGYILIKNSWGP 183
Query: 65 LWGDGGLFKIRRGTDES 81
WG+ G +IRR + S
Sbjct: 184 GWGENGYIRIRRASGNS 200
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 40 HAVKIIGWGVE-DGVKYWLCVNSWGELWGDGGLFKIRRGTDE 80
H V I+G+G YW+ NSWG WG G IRR T+
Sbjct: 162 HTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNR 203
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 34.7 bits (78), Expect = 0.030, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 54 KYWLCVNSWGELWGDGGLFKIRR 76
KYWL NSWGE WG GG K+ +
Sbjct: 3 KYWLVKNSWGEEWGMGGYVKMAK 25
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 10 SIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDG 69
S VA + Y G++ G H V I+G+ YW+ NSWG WG+
Sbjct: 128 STVAIDASSAQFQQYSSGIFSGPCGTKLN-HGVTIVGYQAN----YWIVRNSWGRYWGEK 182
Query: 70 GLFKIRR 76
G ++ R
Sbjct: 183 GYIRMLR 189
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 14 AIEAHQ-DLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVK--YWLCVNSWGELWGDGG 70
AIEA Q Y +GV+ + G H V ++G+G + K +W+ NSWG WG G
Sbjct: 141 AIEADQMPFQFYHEGVFDASCG-TDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDG 199
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 23 IYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGTDES 81
+YK G+++ G HAV +G+G G Y L NSWG WG+ G +I+R S
Sbjct: 143 LYKGGIFEGPCGTKVD-HAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNS 200
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 23 IYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGTDES 81
+YK G+++ G HAV +G+G G Y L NSWG WG+ G +I+R S
Sbjct: 143 LYKGGIFEGPCGTKVE-HAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNS 200
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 36 MSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLF 72
+ GGHAV +G+ +D ++++ NSWG G+ G F
Sbjct: 233 LEGGHAVLCVGY--DDEIRHFRIRNSWGNNVGEDGYF 267
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 23 IYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGTDES 81
+YK G+++ G G AV +G+G G Y L NSWG WG+ G +I+R S
Sbjct: 249 LYKGGIFEGPCGTKVDG-AVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNS 306
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE 50
G I AI+A H+ + YK+G+Y + H V ++G+G E
Sbjct: 130 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFE 173
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVY-QHTVGEMSGGHAVKIIGWGVE 50
G I AI+A H+ + YK+G+Y + H V ++G+G E
Sbjct: 130 GPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFE 173
>pdb|2CBT|A Chain A, Crystal Structure Of The Neocarzinostatin 4tes1 Mutant
Bound Testosterone Hemisuccinate.
pdb|2CBT|B Chain B, Crystal Structure Of The Neocarzinostatin 4tes1 Mutant
Bound Testosterone Hemisuccinate
Length = 112
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 36 MSGGHAVKIIGWGVEDGVKYWLCVNSW 62
+S G VK+ G G++ G YW+ ++W
Sbjct: 13 LSDGTVVKVAGAGLQAGTAYWVAQSAW 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,164,511
Number of Sequences: 62578
Number of extensions: 206197
Number of successful extensions: 494
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 111
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)