Query psy10826
Match_columns 175
No_of_seqs 183 out of 1233
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:28:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02698 Peptidase_C1A_Cathepsi 100.0 2.4E-30 5.3E-35 215.3 10.9 92 1-93 141-238 (239)
2 cd02620 Peptidase_C1A_Cathepsi 100.0 3.1E-30 6.7E-35 214.3 9.7 86 1-86 147-232 (236)
3 cd02621 Peptidase_C1A_Cathepsi 100.0 5E-30 1.1E-34 213.3 9.9 93 1-94 136-243 (243)
4 cd02248 Peptidase_C1A Peptidas 100.0 5.7E-29 1.2E-33 200.3 10.0 86 1-86 120-206 (210)
5 PTZ00203 cathepsin L protease; 100.0 1.8E-28 4E-33 215.1 10.2 88 1-90 251-338 (348)
6 KOG1543|consensus 99.9 3.1E-28 6.7E-33 211.9 8.2 86 1-86 231-317 (325)
7 PF00112 Peptidase_C1: Papain 99.9 2E-27 4.3E-32 190.6 7.7 86 1-86 126-214 (219)
8 PTZ00021 falcipain-2; Provisio 99.9 1.1E-26 2.5E-31 211.1 9.3 91 1-95 384-488 (489)
9 PTZ00049 cathepsin C-like prot 99.9 1.3E-26 2.7E-31 216.5 9.7 96 1-97 560-680 (693)
10 PTZ00200 cysteine proteinase; 99.9 2.4E-26 5.2E-31 207.4 9.2 90 2-95 351-445 (448)
11 PTZ00364 dipeptidyl-peptidase 99.9 3.7E-26 8.1E-31 210.0 10.1 93 1-94 346-460 (548)
12 KOG1542|consensus 99.9 3.1E-26 6.8E-31 198.7 5.6 85 1-86 277-365 (372)
13 KOG1544|consensus 99.9 1.2E-23 2.7E-28 181.9 3.9 93 1-94 356-461 (470)
14 PTZ00462 Serine-repeat antigen 99.9 6.8E-23 1.5E-27 196.6 9.1 85 1-86 683-775 (1004)
15 cd02619 Peptidase_C1 C1 Peptid 99.9 1.2E-22 2.6E-27 163.0 7.9 78 1-78 128-213 (223)
16 smart00645 Pept_C1 Papain fami 99.9 2.9E-22 6.3E-27 159.7 9.8 74 12-86 93-169 (174)
17 cd00585 Peptidase_C1B Peptidas 99.6 8.9E-16 1.9E-20 138.5 6.9 74 3-77 303-399 (437)
18 COG4870 Cysteine protease [Pos 99.5 2.7E-14 5.8E-19 125.3 6.7 77 1-78 227-314 (372)
19 PF03051 Peptidase_C1_2: Pepti 98.8 2.8E-08 6.1E-13 90.1 8.6 74 2-76 303-399 (438)
20 COG3579 PepC Aminopeptidase C 96.7 0.00062 1.3E-08 60.4 1.1 40 37-76 360-401 (444)
21 PF13529 Peptidase_C39_2: Pept 94.7 0.074 1.6E-06 38.8 5.1 53 1-62 92-144 (144)
22 PF14326 DUF4384: Domain of un 92.1 0.46 1E-05 33.2 5.3 30 121-150 7-38 (83)
23 PF14399 Transpep_BrtH: NlpC/p 85.1 2 4.3E-05 36.4 5.3 52 1-59 81-132 (317)
24 PF05543 Peptidase_C47: Stapho 83.9 3.8 8.3E-05 33.2 6.1 29 35-63 116-145 (175)
25 PF09778 Guanylate_cyc_2: Guan 80.1 5 0.00011 33.5 5.7 56 1-60 116-180 (212)
26 cd02549 Peptidase_C39A A sub-f 76.2 7.4 0.00016 28.5 5.2 44 2-62 71-114 (141)
27 KOG4128|consensus 75.5 0.3 6.5E-06 43.7 -2.9 39 37-75 370-412 (457)
28 COG4990 Uncharacterized protei 64.5 10 0.00022 31.2 3.8 43 1-63 126-168 (195)
29 cd00044 CysPc Calpains, domain 62.8 28 0.00061 29.9 6.6 28 37-64 234-263 (315)
30 KOG3842|consensus 32.6 75 0.0016 28.5 4.4 48 123-170 150-218 (429)
31 PF12385 Peptidase_C70: Papain 31.4 74 0.0016 25.6 3.8 34 2-50 102-135 (166)
32 PF13587 DJ-1_PfpI_N: N-termin 25.3 18 0.00039 21.9 -0.5 9 164-172 17-25 (38)
33 smart00230 CysPc Calpain-like 22.6 1.8E+02 0.0039 25.2 5.0 28 37-64 226-255 (318)
34 PF03569 Peptidase_C8: Peptida 21.9 24 0.00053 28.8 -0.5 31 129-159 67-97 (212)
No 1
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=99.97 E-value=2.4e-30 Score=215.26 Aligned_cols=92 Identities=37% Similarity=0.697 Sum_probs=84.2
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecCCCCCcCCceEEEEEeeecC-CeeEEEEEcCCCCCCCCCcEEEEEeCC-
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVED-GVKYWLCVNSWGELWGDGGLFKIRRGT- 78 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~~~-g~~yWivkNSWG~~WG~~Gy~~i~~~~- 78 (175)
||++|+++|||+++|.+.++|+.|++|||+..++...++|||+|||||+++ +++|||||||||++||++|||||+|+.
T Consensus 141 i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~ 220 (239)
T cd02698 141 MMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSY 220 (239)
T ss_pred HHHHHHHcCCEEEEEEecccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCC
Confidence 688999999999999998899999999998876666789999999999876 999999999999999999999999999
Q ss_pred ----CceeeeeeeeeeEEe
Q psy10826 79 ----DESRIESFQVSAGRV 93 (175)
Q Consensus 79 ----n~cgi~~~~~~~~~p 93 (175)
|+|+||+. ++.+.|
T Consensus 221 ~~~~~~~~i~~~-~~~~~~ 238 (239)
T cd02698 221 KGARYNLAIEED-CAWADP 238 (239)
T ss_pred cccccccccccc-eEEEee
Confidence 99999999 555555
No 2
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=99.96 E-value=3.1e-30 Score=214.29 Aligned_cols=86 Identities=56% Similarity=1.041 Sum_probs=81.0
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecCCCCCcCCceEEEEEeeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCc
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGTDE 80 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~n~ 80 (175)
||++|+++|||+++|.+.++|+.|++|||...+....++|||+|||||++++++|||||||||++|||+|||||+|+.|.
T Consensus 147 ik~~l~~~GPv~v~i~~~~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~ 226 (236)
T cd02620 147 IMKEIMTNGPVQAAFTVYEDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNE 226 (236)
T ss_pred HHHHHHHCCCeEEEEEechhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccCcc
Confidence 68899999999999999889999999999876666667999999999999999999999999999999999999999999
Q ss_pred eeeeee
Q psy10826 81 SRIESF 86 (175)
Q Consensus 81 cgi~~~ 86 (175)
|+|++.
T Consensus 227 cgi~~~ 232 (236)
T cd02620 227 CGIESE 232 (236)
T ss_pred cccccc
Confidence 999998
No 3
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=99.96 E-value=5e-30 Score=213.29 Aligned_cols=93 Identities=47% Similarity=0.853 Sum_probs=83.3
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecC-----CCC--------CcCCceEEEEEeeecC--CeeEEEEEcCCCCC
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHT-----VGE--------MSGGHAVKIIGWGVED--GVKYWLCVNSWGEL 65 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~-----~~~--------~~~~HaV~iVGyg~~~--g~~yWivkNSWG~~ 65 (175)
||++|+++|||+++|.+.++|+.|++|||... |.. ..++|||+|||||+++ +++|||||||||++
T Consensus 136 ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~ 215 (243)
T cd02621 136 MKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSS 215 (243)
T ss_pred HHHHHHHcCCEEEEEEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCC
Confidence 68899999999999999989999999999875 321 2579999999999876 89999999999999
Q ss_pred CCCCcEEEEEeCCCceeeeeeeeeeEEee
Q psy10826 66 WGDGGLFKIRRGTDESRIESFQVSAGRVD 94 (175)
Q Consensus 66 WG~~Gy~~i~~~~n~cgi~~~~~~~~~p~ 94 (175)
||++|||||+|+.|.|||++. ++...|+
T Consensus 216 WGe~Gy~~i~~~~~~cgi~~~-~~~~~~~ 243 (243)
T cd02621 216 WGEKGYFKIRRGTNECGIESQ-AVFAYPI 243 (243)
T ss_pred CCcCCeEEEecCCcccCcccc-eEeeccC
Confidence 999999999999999999999 7776663
No 4
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=99.96 E-value=5.7e-29 Score=200.28 Aligned_cols=86 Identities=35% Similarity=0.811 Sum_probs=81.0
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecCCC-CCcCCceEEEEEeeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCC
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVG-EMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGTD 79 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~~-~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~n 79 (175)
||++|+++|||+++|.+.++|+.|++|||..+++ ...++|||+|||||++.+.+|||||||||++||++|||||+++.+
T Consensus 120 ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~~~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~ 199 (210)
T cd02248 120 LKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSN 199 (210)
T ss_pred HHHHHhhcCCEEEEEecCcccccCCCCceeCCCCCCCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCCC
Confidence 6899999999999999999999999999998765 567899999999999989999999999999999999999999999
Q ss_pred ceeeeee
Q psy10826 80 ESRIESF 86 (175)
Q Consensus 80 ~cgi~~~ 86 (175)
.|+|+.+
T Consensus 200 ~cgi~~~ 206 (210)
T cd02248 200 LCGIASY 206 (210)
T ss_pred ccCceee
Confidence 9999987
No 5
>PTZ00203 cathepsin L protease; Provisional
Probab=99.95 E-value=1.8e-28 Score=215.11 Aligned_cols=88 Identities=28% Similarity=0.591 Sum_probs=78.9
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecCCCCCcCCceEEEEEeeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCc
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGTDE 80 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~n~ 80 (175)
||++|+++|||+++|++. +|+.|++|||.. |.....+|||+|||||+++|++|||||||||++||++|||||+|+.|.
T Consensus 251 ~~~~l~~~GPv~v~i~a~-~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~ 328 (348)
T PTZ00203 251 MAAWLAKNGPISIAVDAS-SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNA 328 (348)
T ss_pred HHHHHHhCCCEEEEEEhh-hhcCccCceeec-cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCCCc
Confidence 577899999999999984 899999999975 544456999999999998899999999999999999999999999999
Q ss_pred eeeeeeeeee
Q psy10826 81 SRIESFQVSA 90 (175)
Q Consensus 81 cgi~~~~~~~ 90 (175)
|+|++.++.+
T Consensus 329 Cgi~~~~~~~ 338 (348)
T PTZ00203 329 CLLTGYPVSV 338 (348)
T ss_pred ccccceEEEE
Confidence 9999984443
No 6
>KOG1543|consensus
Probab=99.95 E-value=3.1e-28 Score=211.87 Aligned_cols=86 Identities=42% Similarity=0.843 Sum_probs=81.1
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecCCCCC-cCCceEEEEEeeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCC
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEM-SGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGTD 79 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~n 79 (175)
||++|+++|||+++|.+..+|+.|++|||.++++.. .++|||+|||||+.++.+|||||||||++|||+|||||.|+.+
T Consensus 231 i~~~v~~~GPv~v~~~a~~~F~~Y~~GVy~~~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~ 310 (325)
T KOG1543|consen 231 IAEAVAKNGPVSVAIDAYEDFSLYKGGVYAEEKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVN 310 (325)
T ss_pred HHHHHHhcCCeEEEEeehhhhhhccCceEeCCCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCC
Confidence 688999999999999998899999999999987665 5899999999999667899999999999999999999999999
Q ss_pred ceeeeee
Q psy10826 80 ESRIESF 86 (175)
Q Consensus 80 ~cgi~~~ 86 (175)
.|+|+..
T Consensus 311 ~~~I~~~ 317 (325)
T KOG1543|consen 311 KCGIASE 317 (325)
T ss_pred chhhhcc
Confidence 9999998
No 7
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=99.94 E-value=2e-27 Score=190.61 Aligned_cols=86 Identities=41% Similarity=0.824 Sum_probs=79.5
Q ss_pred CHHHHHcCCceEEEEEecc-ccccCCCcEEecCC-CCCcCCceEEEEEeeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC
Q psy10826 1 MQLEIFHFGSIVAAIEAHQ-DLIIYKKGVYQHTV-GEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFKIRRGT 78 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~-~f~~y~~Giy~~~~-~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~ 78 (175)
||++|+++|||++++.+.+ +|+.|++|||..+. ....++|||+|||||++.+++|||||||||++||++||+||+|+.
T Consensus 126 ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~ 205 (219)
T PF00112_consen 126 IKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDY 205 (219)
T ss_dssp HHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSS
T ss_pred HHHHHhhCceeeeeeeccccccccccceeeeccccccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCC
Confidence 6899999999999999988 69999999999863 456789999999999999999999999999999999999999998
Q ss_pred C-ceeeeee
Q psy10826 79 D-ESRIESF 86 (175)
Q Consensus 79 n-~cgi~~~ 86 (175)
+ +|+|++.
T Consensus 206 ~~~c~i~~~ 214 (219)
T PF00112_consen 206 NNECGIESQ 214 (219)
T ss_dssp SSGGGTTSS
T ss_pred CCcCccCce
Confidence 7 9999999
No 8
>PTZ00021 falcipain-2; Provisional
Probab=99.93 E-value=1.1e-26 Score=211.10 Aligned_cols=91 Identities=30% Similarity=0.582 Sum_probs=79.7
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecCCCCCcCCceEEEEEeeecCC----------eeEEEEEcCCCCCCCCCc
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDG----------VKYWLCVNSWGELWGDGG 70 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~~~g----------~~yWivkNSWG~~WG~~G 70 (175)
||++|+++|||+++|.+.++|+.|++|||.+.|.. ..+|||+|||||++++ .+|||||||||++|||+|
T Consensus 384 lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~G 462 (489)
T PTZ00021 384 FKEAIRFLGPISVSIAVSDDFAFYKGGIFDGECGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKG 462 (489)
T ss_pred HHHHHHhcCCeEEEEEeecccccCCCCcCCCCCCC-ccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCe
Confidence 57899999999999999889999999999887654 4799999999997642 479999999999999999
Q ss_pred EEEEEeCC----CceeeeeeeeeeEEeec
Q psy10826 71 LFKIRRGT----DESRIESFQVSAGRVDR 95 (175)
Q Consensus 71 y~~i~~~~----n~cgi~~~~~~~~~p~~ 95 (175)
||||+|+. +.|||.+. +.+|.+
T Consensus 463 Y~rI~r~~~g~~n~CGI~t~---a~yP~~ 488 (489)
T PTZ00021 463 FIRIETDENGLMKTCSLGTE---AYVPLI 488 (489)
T ss_pred EEEEEcCCCCCCCCCCCccc---ceeEec
Confidence 99999985 58999998 566764
No 9
>PTZ00049 cathepsin C-like protein; Provisional
Probab=99.93 E-value=1.3e-26 Score=216.45 Aligned_cols=96 Identities=44% Similarity=0.711 Sum_probs=83.1
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecC-------CCC--------------CcCCceEEEEEeeec--CCe--eE
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHT-------VGE--------------MSGGHAVKIIGWGVE--DGV--KY 55 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~-------~~~--------------~~~~HaV~iVGyg~~--~g~--~y 55 (175)
||++|+++|||+++|++.++|+.|++|||..+ |.. ...+|||+|||||.+ +|. +|
T Consensus 560 Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~enG~~~~Y 639 (693)
T PTZ00049 560 MMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGKLYKY 639 (693)
T ss_pred HHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccccccccCceEEEEEEeccccCCCcccCE
Confidence 68899999999999999889999999999852 321 136999999999975 463 79
Q ss_pred EEEEcCCCCCCCCCcEEEEEeCCCceeeeeeeeeeEEeecCC
Q psy10826 56 WLCVNSWGELWGDGGLFKIRRGTDESRIESFQVSAGRVDRDR 97 (175)
Q Consensus 56 WivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~p~~~~ 97 (175)
||||||||+.||++|||||+|+.|.|||+++ ++...|.+.+
T Consensus 640 WIVRNSWGt~WGenGYfKI~RG~N~CGIEs~-a~~~~pd~~r 680 (693)
T PTZ00049 640 WIGRNSWGKNWGKEGYFKIIRGKNFSGIESQ-SLFIEPDFSR 680 (693)
T ss_pred EEEECCCCCCcccCceEEEEcCCCccCCccc-eeEEeeeccc
Confidence 9999999999999999999999999999999 7777777643
No 10
>PTZ00200 cysteine proteinase; Provisional
Probab=99.93 E-value=2.4e-26 Score=207.43 Aligned_cols=90 Identities=30% Similarity=0.555 Sum_probs=77.7
Q ss_pred HHHHHcCCceEEEEEeccccccCCCcEEecCCCCCcCCceEEEEEeee--cCCeeEEEEEcCCCCCCCCCcEEEEEeC--
Q psy10826 2 QLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGV--EDGVKYWLCVNSWGELWGDGGLFKIRRG-- 77 (175)
Q Consensus 2 k~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~--~~g~~yWivkNSWG~~WG~~Gy~~i~~~-- 77 (175)
+++++.+|||+++|.+.++|+.|++|||.++|... ++|||+|||||. ++|.+|||||||||++||++|||||+|+
T Consensus 351 l~~~l~~GPV~v~i~~~~~f~~Yk~GIy~~~C~~~-~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~ 429 (448)
T PTZ00200 351 LNKSLVISPTVVYIAVSRELLKYKSGVYNGECGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNE 429 (448)
T ss_pred HHHHHhcCCEEEEeecccccccCCCCccccccCCC-CcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCC
Confidence 34455689999999998899999999998877544 799999999984 4688999999999999999999999995
Q ss_pred -CCceeeeeeeeeeEEeec
Q psy10826 78 -TDESRIESFQVSAGRVDR 95 (175)
Q Consensus 78 -~n~cgi~~~~~~~~~p~~ 95 (175)
.|.|||++. +.+|.+
T Consensus 430 g~n~CGI~~~---~~~P~~ 445 (448)
T PTZ00200 430 GTDKCGILTV---GLTPVF 445 (448)
T ss_pred CCCcCCcccc---ceeeEE
Confidence 589999998 556654
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=99.93 E-value=3.7e-26 Score=209.99 Aligned_cols=93 Identities=34% Similarity=0.624 Sum_probs=82.0
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecC---------CC----------CCcCCceEEEEEeee-cCCeeEEEEEc
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHT---------VG----------EMSGGHAVKIIGWGV-EDGVKYWLCVN 60 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~---------~~----------~~~~~HaV~iVGyg~-~~g~~yWivkN 60 (175)
||++|+++|||+++|++..+|+.|++|||... ++ ....+|||+|||||+ ++|.+||||||
T Consensus 346 I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKN 425 (548)
T PTZ00364 346 IIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLD 425 (548)
T ss_pred HHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEEC
Confidence 68899999999999999989999999998621 11 134699999999996 57899999999
Q ss_pred CCCC--CCCCCcEEEEEeCCCceeeeeeeeeeEEee
Q psy10826 61 SWGE--LWGDGGLFKIRRGTDESRIESFQVSAGRVD 94 (175)
Q Consensus 61 SWG~--~WG~~Gy~~i~~~~n~cgi~~~~~~~~~p~ 94 (175)
|||+ +|||+|||||+|+.|+||||++ +++.+|.
T Consensus 426 SWGt~~~WGE~GYfRI~RG~N~CGIes~-~v~~~~~ 460 (548)
T PTZ00364 426 PWGSRRSWCDGGTRKIARGVNAYNIESE-VVVMYWA 460 (548)
T ss_pred CCCCCCCcccCCeEEEEcCCCcccccce-eeeeeee
Confidence 9999 9999999999999999999999 8888884
No 12
>KOG1542|consensus
Probab=99.92 E-value=3.1e-26 Score=198.68 Aligned_cols=85 Identities=29% Similarity=0.653 Sum_probs=78.5
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEec---CCCCCcCCceEEEEEeeecC-CeeEEEEEcCCCCCCCCCcEEEEEe
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQH---TVGEMSGGHAVKIIGWGVED-GVKYWLCVNSWGELWGDGGLFKIRR 76 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~---~~~~~~~~HaV~iVGyg~~~-g~~yWivkNSWG~~WG~~Gy~~i~~ 76 (175)
|.+.|.++|||+++|++ ..++.|.+||..+ .|+...++|+|||||||... .++|||||||||+.|||+||+|+.|
T Consensus 277 ia~wLv~~GPi~vgiNa-~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~R 355 (372)
T KOG1542|consen 277 IAAWLVTFGPLSVGINA-KPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCR 355 (372)
T ss_pred HHHHHHhcCCeEEEEch-HHHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEec
Confidence 57889999999999996 5689999999988 46666699999999999988 8999999999999999999999999
Q ss_pred CCCceeeeee
Q psy10826 77 GTDESRIESF 86 (175)
Q Consensus 77 ~~n~cgi~~~ 86 (175)
|.|.|||++.
T Consensus 356 G~N~CGi~~m 365 (372)
T KOG1542|consen 356 GSNACGIADM 365 (372)
T ss_pred cccccccccc
Confidence 9999999998
No 13
>KOG1544|consensus
Probab=99.88 E-value=1.2e-23 Score=181.92 Aligned_cols=93 Identities=45% Similarity=0.892 Sum_probs=83.1
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecCC--------CCCcCCceEEEEEeeecC---C--eeEEEEEcCCCCCCC
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTV--------GEMSGGHAVKIIGWGVED---G--VKYWLCVNSWGELWG 67 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~--------~~~~~~HaV~iVGyg~~~---g--~~yWivkNSWG~~WG 67 (175)
||++||++|||.+.|.|++||+.|++|||.+.. ....+.|+|.|.|||++. | .+||+..||||+.||
T Consensus 356 ImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WG 435 (470)
T KOG1544|consen 356 IMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWG 435 (470)
T ss_pred HHHHHHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccc
Confidence 789999999999999999999999999998854 124578999999999863 3 599999999999999
Q ss_pred CCcEEEEEeCCCceeeeeeeeeeEEee
Q psy10826 68 DGGLFKIRRGTDESRIESFQVSAGRVD 94 (175)
Q Consensus 68 ~~Gy~~i~~~~n~cgi~~~~~~~~~p~ 94 (175)
|+|||||.|+.|+|.||+. ++++.-.
T Consensus 436 E~GYFriLRGvNecdIEsf-vIgAWGr 461 (470)
T KOG1544|consen 436 ERGYFRILRGVNECDIESF-VIGAWGR 461 (470)
T ss_pred cCceEEEeccccchhhhHh-hhhhhhc
Confidence 9999999999999999999 8776653
No 14
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=99.88 E-value=6.8e-23 Score=196.65 Aligned_cols=85 Identities=34% Similarity=0.692 Sum_probs=73.0
Q ss_pred CHHHHHcCCceEEEEEeccccccC-CCcEEec-CCCCCcCCceEEEEEeeec-----CCeeEEEEEcCCCCCCCCCcEEE
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIY-KKGVYQH-TVGEMSGGHAVKIIGWGVE-----DGVKYWLCVNSWGELWGDGGLFK 73 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y-~~Giy~~-~~~~~~~~HaV~iVGyg~~-----~g~~yWivkNSWG~~WG~~Gy~~ 73 (175)
||++|+++|||+++|.+. +|+.| .+|||.. .|+....+|||+|||||.+ ++++|||||||||+.||++||||
T Consensus 683 IK~eI~~kGPVaV~IdAs-df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFK 761 (1004)
T PTZ00462 683 IKDEIMNKGSVIAYIKAE-NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFK 761 (1004)
T ss_pred HHHHHHhcCCEEEEEEee-hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEE
Confidence 578999999999999985 68888 4898654 4655567999999999964 25799999999999999999999
Q ss_pred EEe-CCCceeeeee
Q psy10826 74 IRR-GTDESRIESF 86 (175)
Q Consensus 74 i~~-~~n~cgi~~~ 86 (175)
|.| +.+.|++...
T Consensus 762 I~r~g~n~CGin~i 775 (1004)
T PTZ00462 762 VDMYGPSHCEDNFI 775 (1004)
T ss_pred EEeCCCCCCccchh
Confidence 998 7899999876
No 15
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=99.87 E-value=1.2e-22 Score=163.02 Aligned_cols=78 Identities=28% Similarity=0.463 Sum_probs=69.5
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEe------cCCCCCcCCceEEEEEeeecC--CeeEEEEEcCCCCCCCCCcEE
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQ------HTVGEMSGGHAVKIIGWGVED--GVKYWLCVNSWGELWGDGGLF 72 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~------~~~~~~~~~HaV~iVGyg~~~--g~~yWivkNSWG~~WG~~Gy~ 72 (175)
||++|+++|||+++|.+.++|+.|++|++. ..+....++|||+|||||++. +++|||||||||+.||++||+
T Consensus 128 ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~ 207 (223)
T cd02619 128 IKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYG 207 (223)
T ss_pred HHHHHHHCCCEEEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEE
Confidence 689999999999999999999999999863 223455689999999999887 899999999999999999999
Q ss_pred EEEeCC
Q psy10826 73 KIRRGT 78 (175)
Q Consensus 73 ~i~~~~ 78 (175)
||+++.
T Consensus 208 ~i~~~~ 213 (223)
T cd02619 208 RISYED 213 (223)
T ss_pred EEehhh
Confidence 999973
No 16
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=99.87 E-value=2.9e-22 Score=159.70 Aligned_cols=74 Identities=46% Similarity=0.944 Sum_probs=63.9
Q ss_pred EEEEEeccccccCCCcEEecC-CCCCcCCceEEEEEeeec-CCeeEEEEEcCCCCCCCCCcEEEEEeCC-Cceeeeee
Q psy10826 12 VAAIEAHQDLIIYKKGVYQHT-VGEMSGGHAVKIIGWGVE-DGVKYWLCVNSWGELWGDGGLFKIRRGT-DESRIESF 86 (175)
Q Consensus 12 ~v~i~~~~~f~~y~~Giy~~~-~~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WG~~Gy~~i~~~~-n~cgi~~~ 86 (175)
++.+.+ .+|+.|++|||+.+ |.....+|+|+|||||.+ ++++|||||||||+.||++|||||+++. |.|+|+..
T Consensus 93 ~~~~~~-~~f~~Y~~Gi~~~~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~ 169 (174)
T smart00645 93 SVAIDA-SDFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEAS 169 (174)
T ss_pred EEEEEc-ccccCCcCeEECCCCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceee
Confidence 444444 46999999999875 544457999999999987 8999999999999999999999999987 99999876
No 17
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.61 E-value=8.9e-16 Score=138.52 Aligned_cols=74 Identities=24% Similarity=0.381 Sum_probs=62.4
Q ss_pred HHHHcCCceEEEEEeccccccCCCcEEecC---------------------CCCCcCCceEEEEEeeec-CCe-eEEEEE
Q psy10826 3 LEIFHFGSIVAAIEAHQDLIIYKKGVYQHT---------------------VGEMSGGHAVKIIGWGVE-DGV-KYWLCV 59 (175)
Q Consensus 3 ~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~---------------------~~~~~~~HaV~iVGyg~~-~g~-~yWivk 59 (175)
++|..++||.++.++. .|+.|++||+... ++....+|||+||||+.+ +|+ .||+||
T Consensus 303 ~~L~~g~pV~~g~Dv~-~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~g~p~yw~Vk 381 (437)
T cd00585 303 AQLKDGEPVWFGCDVG-KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDEDGKPVKWKVE 381 (437)
T ss_pred HHHhcCCCEEEEEEcC-hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCCCCcceEEEE
Confidence 5778899999999996 4789999999653 234456899999999974 476 699999
Q ss_pred cCCCCCCCCCcEEEEEeC
Q psy10826 60 NSWGELWGDGGLFKIRRG 77 (175)
Q Consensus 60 NSWG~~WG~~Gy~~i~~~ 77 (175)
||||+.||++||++|+++
T Consensus 382 NSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 382 NSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred cccCCCCCCCcceehhHH
Confidence 999999999999999874
No 18
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.7e-14 Score=125.31 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=54.2
Q ss_pred CHHHHHcCCceEEEEEecc-ccccCCCcEEecCCCCCcCCceEEEEEeeec----------CCeeEEEEEcCCCCCCCCC
Q psy10826 1 MQLEIFHFGSIVAAIEAHQ-DLIIYKKGVYQHTVGEMSGGHAVKIIGWGVE----------DGVKYWLCVNSWGELWGDG 69 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~-~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~~----------~g~~yWivkNSWG~~WG~~ 69 (175)
||+++...|-+...|.+.. .+....-+.|..... ...+|||+||||++. .|.+.||||||||+.||++
T Consensus 227 i~~~~~~yg~~s~~~~id~~~~~~~~~~~~~~~s~-~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~ 305 (372)
T COG4870 227 IKAMFGFYGAVSSSMYIDATNSLGICIPYPYVDSG-ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGEN 305 (372)
T ss_pred hHHHHhhhccccceeEEecccccccccCCCCCCcc-ccccceEEEEeccccccccccccCCCCCceEEEECccccccccC
Confidence 5777888887776665421 122212222322222 567999999999974 2457999999999999999
Q ss_pred cEEEEEeCC
Q psy10826 70 GLFKIRRGT 78 (175)
Q Consensus 70 Gy~~i~~~~ 78 (175)
|||||+|..
T Consensus 306 GYfwisY~y 314 (372)
T COG4870 306 GYFWISYYY 314 (372)
T ss_pred ceEEEEeee
Confidence 999999964
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=98.76 E-value=2.8e-08 Score=90.14 Aligned_cols=74 Identities=27% Similarity=0.359 Sum_probs=54.7
Q ss_pred HHHHHcCCceEEEEEeccccccCCCcEEecCC---------------------CCCcCCceEEEEEeee-cCCe-eEEEE
Q psy10826 2 QLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTV---------------------GEMSGGHAVKIIGWGV-EDGV-KYWLC 58 (175)
Q Consensus 2 k~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~---------------------~~~~~~HaV~iVGyg~-~~g~-~yWiv 58 (175)
.++|...-||-.+-++.+. ..-+.||..... .....+|||+|+|... ++|+ .+|.|
T Consensus 303 i~~Lk~G~~VwfgcDV~k~-~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~p~~wkV 381 (438)
T PF03051_consen 303 IKSLKAGYPVWFGCDVGKF-FDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGKPVRWKV 381 (438)
T ss_dssp HHHHHTT--EEEEEETTTT-EETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSSEEEEEE
T ss_pred HHHHHcCCcEEEeccCCcc-ccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCCeeEEEE
Confidence 4667778899999999764 455778875432 1244689999999996 6776 69999
Q ss_pred EcCCCCCCCCCcEEEEEe
Q psy10826 59 VNSWGELWGDGGLFKIRR 76 (175)
Q Consensus 59 kNSWG~~WG~~Gy~~i~~ 76 (175)
+||||++.|.+||+.++.
T Consensus 382 eNSWG~~~g~kGy~~msd 399 (438)
T PF03051_consen 382 ENSWGTDNGDKGYFYMSD 399 (438)
T ss_dssp E-SBTTTSTBTTEEEEEH
T ss_pred EcCCCCCCCCCcEEEECH
Confidence 999999999999999975
No 20
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=96.69 E-value=0.00062 Score=60.39 Aligned_cols=40 Identities=33% Similarity=0.521 Sum_probs=33.8
Q ss_pred cCCceEEEEEeee-cCC-eeEEEEEcCCCCCCCCCcEEEEEe
Q psy10826 37 SGGHAVKIIGWGV-EDG-VKYWLCVNSWGELWGDGGLFKIRR 76 (175)
Q Consensus 37 ~~~HaV~iVGyg~-~~g-~~yWivkNSWG~~WG~~Gy~~i~~ 76 (175)
...|||+|.|.+. ++| .-=|.|.||||.+=|.+|||-++-
T Consensus 360 LmTHAMvlTGvd~d~~g~p~rwkVENSWG~d~G~~GyfvaSd 401 (444)
T COG3579 360 LMTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYFVASD 401 (444)
T ss_pred HHHHHHHhhccccccCCCceeeEeecccccccCCCceEeehH
Confidence 4579999999984 454 367999999999999999998863
No 21
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=94.74 E-value=0.074 Score=38.80 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=30.3
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecCCCCCcCCceEEEEEeeecCCeeEEEEEcCC
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSW 62 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSW 62 (175)
|+++|.+..||.+.+...-. .-....+. ....+|.|+|+||+++. ++++..+|
T Consensus 92 i~~~i~~G~Pvi~~~~~~~~--~~~~~~~~----~~~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 92 IKQEIDAGRPVIVSVNSGWR--PPNGDGYD----GTYGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp HHHHHHTT--EEEEEETTSS----TTEEEE----E-TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred HHHHHHCCCcEEEEEEcccc--cCCCCCcC----CCcCCEEEEEEEEeCCC---EEEEeCCC
Confidence 57888998999999974210 00111121 22368999999998642 78888776
No 22
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=92.10 E-value=0.46 Score=33.23 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=25.9
Q ss_pred ceEEEEEcCCCceEEEEEEe--cceEEEEccC
Q psy10826 121 AFCRCVLDNTGPCLLYLLRF--MNKIILIIPT 150 (175)
Q Consensus 121 ~~f~~~~~n~~~~yly~~~~--~~~~~~lfP~ 150 (175)
+-.++.+..+.+||||+|.. .++...|||.
T Consensus 7 e~v~~~~~~~~~~Yl~l~~~~~~G~v~~L~Pn 38 (83)
T PF14326_consen 7 ERVRFRVTSNRDGYLYLFYIDADGKVTLLFPN 38 (83)
T ss_pred CEEEEEEEeCCCeEEEEEEECCCCCEEEEecC
Confidence 33888999999999999999 7777799996
No 23
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=85.09 E-value=2 Score=36.41 Aligned_cols=52 Identities=10% Similarity=0.287 Sum_probs=33.2
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecCCCCCcCCceEEEEEeeecCCeeEEEEE
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCV 59 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~yWivk 59 (175)
|+++|.++.||.+.++.. +..|...-| .....+|.++|+||+++++ .+.++-
T Consensus 81 l~~~l~~g~pv~~~~D~~--~lpy~~~~~----~~~~~~H~i~v~G~d~~~~-~~~v~D 132 (317)
T PF14399_consen 81 LKEALDAGRPVIVWVDMY--YLPYRPNYY----KKHHADHYIVVYGYDEEED-VFYVSD 132 (317)
T ss_pred HHHHHhCCCceEEEeccc--cCCCCcccc----ccccCCcEEEEEEEeCCCC-EEEEEc
Confidence 467788878999998763 233332211 2334689999999987633 355543
No 24
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=83.87 E-value=3.8 Score=33.23 Aligned_cols=29 Identities=28% Similarity=0.619 Sum_probs=21.3
Q ss_pred CCcCCceEEEEEeee-cCCeeEEEEEcCCC
Q psy10826 35 EMSGGHAVKIIGWGV-EDGVKYWLCVNSWG 63 (175)
Q Consensus 35 ~~~~~HaV~iVGyg~-~~g~~yWivkNSWG 63 (175)
....+||++||||-. .+|.++.++=|-|-
T Consensus 116 ~~~~gHAlavvGya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 116 GPHAGHALAVVGYAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp TB--EEEEEEEEEEEETTSEEEEEEE-TT-
T ss_pred CCccceeEEEEeeeecCCCCeEEEEeCCcc
Confidence 345689999999986 56689999999984
No 25
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=80.07 E-value=5 Score=33.50 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=31.6
Q ss_pred CHHHHHcCCceEEEEEecccccc---CCCcEE---ecCC---CCCcCCceEEEEEeeecCCeeEEEEEc
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLII---YKKGVY---QHTV---GEMSGGHAVKIIGWGVEDGVKYWLCVN 60 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~---y~~Giy---~~~~---~~~~~~HaV~iVGyg~~~g~~yWivkN 60 (175)
|...|.++||+.+.++.. +.. -+.-.. ...+ .....+|-|+|+||+.+.++ ++++|
T Consensus 116 i~~hl~~g~~aIvLVd~~--~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~~--~~yrd 180 (212)
T PF09778_consen 116 IIEHLSSGGPAIVLVDAS--LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATKE--FEYRD 180 (212)
T ss_pred HHHHHhCCCcEEEEEccc--cccChhhcccccccccccccCCCCCccEEEEEEEeecCCCCe--EEEeC
Confidence 456788888877777653 111 011111 1111 23456899999999865433 44444
No 26
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=76.21 E-value=7.4 Score=28.49 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=27.9
Q ss_pred HHHHHcCCceEEEEEeccccccCCCcEEecCCCCCcCCceEEEEEeeecCCeeEEEEEcCC
Q psy10826 2 QLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSW 62 (175)
Q Consensus 2 k~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSW 62 (175)
++.+.+..||.+.+... ......+|.|+|+||+ + ....+|.+.|
T Consensus 71 ~~~l~~~~Pvi~~~~~~--------------~~~~~~gH~vVv~g~~-~--~~~~~i~DP~ 114 (141)
T cd02549 71 LRQLAAGHPVIVSVNLG--------------VSITPSGHAMVVIGYD-R--KGNVYVNDPG 114 (141)
T ss_pred HHHHHCCCeEEEEEecC--------------cccCCCCeEEEEEEEc-C--CCCEEEECCC
Confidence 46677777888777640 0112358999999997 1 1235666665
No 27
>KOG4128|consensus
Probab=75.50 E-value=0.3 Score=43.69 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=31.3
Q ss_pred cCCceEEEEEeee----cCCeeEEEEEcCCCCCCCCCcEEEEE
Q psy10826 37 SGGHAVKIIGWGV----EDGVKYWLCVNSWGELWGDGGLFKIR 75 (175)
Q Consensus 37 ~~~HaV~iVGyg~----~~g~~yWivkNSWG~~WG~~Gy~~i~ 75 (175)
...|||++.|-+. +.+-.=|-|.||||.+-|.+|+..+.
T Consensus 370 lmthAml~T~v~~kd~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 370 LMTHAMLLTSVGLKDPATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred HHHHHHHhhhccccCcccCCchhhhhhchhhhhccccchhhhh
Confidence 3579999999983 22446799999999999999996663
No 28
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.47 E-value=10 Score=31.19 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=30.1
Q ss_pred CHHHHHcCCceEEEEEeccccccCCCcEEecCCCCCcCCceEEEEEeeecCCeeEEEEEcCCC
Q psy10826 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWG 63 (175)
Q Consensus 1 Ik~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG 63 (175)
||..|.+..||.+-... |.. ..-|+|+|+||++. ++..-++||
T Consensus 126 ik~ql~kg~PV~iw~T~---~~~-------------~s~H~v~itgyDk~----n~yynDpyG 168 (195)
T COG4990 126 IKGQLLKGRPVVIWVTN---FHS-------------YSIHSVLITGYDKY----NIYYNDPYG 168 (195)
T ss_pred HHHHHhcCCcEEEEEec---ccc-------------cceeeeEeeccccc----ceEeccccc
Confidence 56778888888876654 222 23699999999865 566666664
No 29
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=62.79 E-value=28 Score=29.93 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=24.4
Q ss_pred cCCceEEEEEeeecC--CeeEEEEEcCCCC
Q psy10826 37 SGGHAVKIIGWGVED--GVKYWLCVNSWGE 64 (175)
Q Consensus 37 ~~~HaV~iVGyg~~~--g~~yWivkNSWG~ 64 (175)
..+||=.|++...-+ +.+.-.+||.||.
T Consensus 234 ~~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 234 VKGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred ccCcceEEeEEEEEccCceEEEEecCCccC
Confidence 458999999998766 8899999999994
No 30
>KOG3842|consensus
Probab=32.57 E-value=75 Score=28.53 Aligned_cols=48 Identities=40% Similarity=0.639 Sum_probs=32.7
Q ss_pred EEEEEcCCC--ceEEEEEEe-cceEEEEccC-----CCC-------CCceeeE------eecCCCceee
Q psy10826 123 CRCVLDNTG--PCLLYLLRF-MNKIILIIPT-----TSN-------LNGVVVS------TVDSEPGGWW 170 (175)
Q Consensus 123 f~~~~~n~~--~~yly~~~~-~~~~~~lfP~-----~~~-------~~~~~~~------~~~~~~~~~~ 170 (175)
||+..+-.+ .+++|+.|| +.+.|.|=.+ ++| -|+|+|| +-|+.||-|-
T Consensus 150 CRIl~dR~~p~~AriyAAGFDss~NIflgeka~KW~~~dg~mDGLTTNGVLvmHPk~~f~eds~~g~WR 218 (429)
T KOG3842|consen 150 CRILCDRNEPYTARIYAAGFDSSKNIFLGEKAAKWKTSDGEMDGLTTNGVLVMHPKGGFTEDSKPGVWR 218 (429)
T ss_pred eeeeeccCCccceeEEecccccccceeccchhhcccCCCcccccccccceEEEccCCCcccCCCCceeE
Confidence 777766544 459999999 7776655443 332 4889988 3577888774
No 31
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=31.44 E-value=74 Score=25.64 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=22.8
Q ss_pred HHHHHcCCceEEEEEeccccccCCCcEEecCCCCCcCCceEEEEEeeec
Q psy10826 2 QLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVE 50 (175)
Q Consensus 2 k~~l~~~GPV~v~i~~~~~f~~y~~Giy~~~~~~~~~~HaV~iVGyg~~ 50 (175)
++.|.++||+-++.... .+....|+++|.|-..+
T Consensus 102 ~~LL~~yGPLwv~~~~P---------------~~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 102 ANLLREYGPLWVAWEAP---------------GDSWVAHASVITGIDGD 135 (166)
T ss_pred HHHHHHcCCeEEEecCC---------------CCcceeeEEEEEeecCC
Confidence 46678899998885432 22223588888888644
No 32
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=25.29 E-value=18 Score=21.91 Aligned_cols=9 Identities=33% Similarity=1.254 Sum_probs=4.8
Q ss_pred CCCceeeee
Q psy10826 164 SEPGGWWFE 172 (175)
Q Consensus 164 ~~~~~~~~~ 172 (175)
++|-|+|++
T Consensus 17 ~~~TG~wl~ 25 (38)
T PF13587_consen 17 GRPTGFWLS 25 (38)
T ss_dssp TEE--B-HH
T ss_pred CCcceeccH
Confidence 789999975
No 33
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=22.58 E-value=1.8e+02 Score=25.20 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=22.4
Q ss_pred cCCceEEEEEeeecCCee--EEEEEcCCCC
Q psy10826 37 SGGHAVKIIGWGVEDGVK--YWLCVNSWGE 64 (175)
Q Consensus 37 ~~~HaV~iVGyg~~~g~~--yWivkNSWG~ 64 (175)
..+||=.|++...-++.+ .-.+||-||.
T Consensus 226 v~~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 226 VKGHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred ccCccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 358999999987655555 9999999983
No 34
>PF03569 Peptidase_C8: Peptidase family C8; InterPro: IPR005315 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C8 (clan CA). The peptidases are encoded by the double stranded viral RNAs belonging to the genus Hypovirus.
Probab=21.89 E-value=24 Score=28.77 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=24.2
Q ss_pred CCCceEEEEEEecceEEEEccCCCCCCceee
Q psy10826 129 NTGPCLLYLLRFMNKIILIIPTTSNLNGVVV 159 (175)
Q Consensus 129 n~~~~yly~~~~~~~~~~lfP~~~~~~~~~~ 159 (175)
..+.||.|.|.-+..+-.+||++.-++.|+.
T Consensus 67 eEGrCfellFn~nq~TpaIf~kKPllrdvl~ 97 (212)
T PF03569_consen 67 EEGRCFELLFNPNQRTPAIFDKKPLLRDVLG 97 (212)
T ss_pred ccceeEEEeccccccccccccCCCcHHHHHH
Confidence 4588999998655555699999998887763
Done!