RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10826
(175 letters)
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 152 bits (387), Expect = 5e-47
Identities = 47/94 (50%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+Q EI +G + A ++D + YK G+Y+H GE GGHA++IIGWGVE+ YWL N
Sbjct: 162 IQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIAN 221
Query: 61 SWGELWGDGGLFKIRRGTDESRIESFQVSAGRVD 94
SW E WG+ G F+I RG DE IES +V+AGR++
Sbjct: 222 SWNEDWGENGYFRIVRGRDECSIES-EVTAGRIN 254
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 152 bits (385), Expect = 7e-46
Identities = 41/91 (45%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
E+F G A + ++D I Y GVY H G+ GGHAV+++GWG +GV YW N
Sbjct: 221 YMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIAN 280
Query: 61 SWGELWGDGGLFKIRRGTDESRIESFQVSAG 91
SW WG G F IRRG+ E IE SAG
Sbjct: 281 SWNTEWGMDGYFLIRRGSSECGIED-GGSAG 310
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 150 bits (380), Expect = 8e-46
Identities = 48/91 (52%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A + D ++YK GVYQH GEM GGHA++I+GWGVE+G YWL N
Sbjct: 166 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVAN 225
Query: 61 SWGELWGDGGLFKIRRGTDESRIESFQVSAG 91
SW WGD G FKI RG D IES +V AG
Sbjct: 226 SWNTDWGDNGFFKILRGQDHCGIES-EVVAG 255
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 150 bits (381), Expect = 2e-45
Identities = 48/91 (52%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
+ EI+ G + A + D ++YK GVYQH GEM GGHA++I+GWGVE+G YWL N
Sbjct: 223 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVAN 282
Query: 61 SWGELWGDGGLFKIRRGTDESRIESFQVSAG 91
SW WGD G FKI RG D IES +V AG
Sbjct: 283 SWNTDWGDNGFFKILRGQDHCGIES-EVVAG 312
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 134 bits (339), Expect = 1e-39
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVN 60
M EI+ G I I A + L Y G+Y H V + GWG+ DG +YW+ N
Sbjct: 176 MMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRN 235
Query: 61 SWGELWGDGGLFKIRRGTDESR--------IESFQVSAG 91
SWGE WG+ G +I T + IE + G
Sbjct: 236 SWGEPWGERGWLRIVTSTYKDGKGARYNLAIEE-HCTFG 273
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 127 bits (322), Expect = 1e-35
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGE------MSGGHAVKIIGWGVE--DG 52
M+LE+ H G + A E + D + YKKG+Y HT HAV ++G+G + G
Sbjct: 336 MKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASG 395
Query: 53 VKYWLCVNSWGELWGDGGLFKIRRGTDESRIESFQVSAG 91
+ YW+ NSWG WG+ G F+IRRGTDE IES A
Sbjct: 396 MDYWIVKNSWGTGWGENGYFRIRRGTDECAIES-IAVAA 433
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 86.5 bits (214), Expect = 5e-21
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVY----QHTVGEMSGGHAVKIIGWGVEDGVKYW 56
++ + V + + + GGHAV +G+ +D ++++
Sbjct: 194 LKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGY--DDEIRHF 251
Query: 57 LCVNSWGELWGDGGLFKIRR 76
NSWG G+ G F +
Sbjct: 252 RIRNSWGNNVGEDGYFWMPY 271
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease; HET:
DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Length = 265
Score = 78.5 bits (194), Expect = 3e-18
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 1 MQLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTV-GEMSGGHAVKIIGWGVE-----DGVK 54
++ E+ + GS++A I+A + G + G+ + HAV I+G+G +
Sbjct: 160 IKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKS 219
Query: 55 YWLCVNSWGELWGDGGLFKIRRGTD 79
YW+ NSWG WGD G FK+
Sbjct: 220 YWIVRNSWGPYWGDEGYFKVDMYGP 244
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 77.3 bits (191), Expect = 1e-17
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 7 HFGSIVAAIEAHQDLIIYKKGVYQ-HTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGEL 65
G + A +A Y GVY T HAV I+G+G E+G YWL NSWG+
Sbjct: 244 TKGPVAVAFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDG 303
Query: 66 WGDGGLFKIRRGTD 79
WG G FKI R +
Sbjct: 304 WGLDGYFKIARNAN 317
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 75.6 bits (187), Expect = 2e-17
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 14 AIEAHQDLIIYKKGVYQHTVGEMSGG---HAVKIIGWGVEDGVKYWLCVNSWGELWGDGG 70
A E D ++Y+KG+Y T + HAV +G+G E+G+ YW+ NSWG WG G
Sbjct: 137 AFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNG 196
Query: 71 LFKIRRG 77
F I RG
Sbjct: 197 YFLIERG 203
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 76.1 bits (188), Expect = 3e-17
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 11 IVAAIEAHQDLIIYKKGVYQHTVGEMSG-GHAVKIIGWGVEDGVKYWLCVNSWGELWGDG 69
A++ D ++Y+ G+YQ HAV +G+G + G YW+ NSWG WG+
Sbjct: 223 AAVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGER 282
Query: 70 GLFKIRRGTD 79
G ++ R
Sbjct: 283 GYIRMVRNRG 292
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 75.0 bits (185), Expect = 1e-16
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 7 HFGSIVAAIEAHQDLIIYKKGVYQHTV-GEMSGGHAVKIIGWGVEDGVKYWLCVNSWGEL 65
G + AI+A +L Y G++ + H V ++G+G ++G YW+ NSWG
Sbjct: 242 QAGPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSG 301
Query: 66 WGDGGLFKIRRGTD 79
WG+ G ++ R
Sbjct: 302 WGESGYWRQVRNYG 315
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 73.4 bits (181), Expect = 3e-16
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 5 IFHFGSIVAAIEA-HQDLIIYKKGVYQ-HTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSW 62
+ G + AI+A Y KGVY + + HAV +G+G++ G K+W+ NSW
Sbjct: 224 VARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSW 283
Query: 63 GELWGDGGLFKIRRGTD 79
GE WG+ G + R +
Sbjct: 284 GENWGNKGYILMARNKN 300
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya}
SCOP: d.3.1.1 PDB: 1meg_A*
Length = 216
Score = 72.1 bits (178), Expect = 3e-16
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 11 IVAAIEA-HQDLIIYKKGVYQHTVGEMSGG---HAVKIIGWGVEDGVKYWLCVNSWGELW 66
+ +E+ + +YK G+++ G HAV +G+G G Y L NSWG W
Sbjct: 130 VSVVVESKGRPFQLYKGGIFE----GPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAW 185
Query: 67 GDGGLFKIRRGTD 79
G+ G +I+R
Sbjct: 186 GEKGYIRIKRAPG 198
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 71.3 bits (176), Expect = 5e-16
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 14 AIEAHQDLIIYKKGVYQHTVGEMSGG---HAVKIIGWGVEDGVKYWLCVNSWGELWGDGG 70
AI A + Y+ G+ + S HAV ++G+G V +W NSWG WG+ G
Sbjct: 133 AINAF-GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKG 191
Query: 71 LFKIRRGT 78
+ + RG+
Sbjct: 192 YYYLHRGS 199
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 70.6 bits (174), Expect = 1e-15
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 1 MQLEIFHFGSIVAAIEA-HQDLIIYKKGVYQ-HTVGEMSGGHAVKIIGWGVEDGVKYWLC 58
++ + G + AI+A Y KGVY + + HAV +G+G++ G K+W+
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWII 180
Query: 59 VNSWGELWGDGGLFKIRRGTD 79
NSWGE WG+ G + R +
Sbjct: 181 KNSWGENWGNKGYILMARNKN 201
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 70.2 bits (173), Expect = 1e-15
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 14 AIEA-HQDLIIYKKGVYQHTVGEMSGG---HAVKIIGWGVEDGVKYWLCVNSWGELWGDG 69
A+EA + Y G++ G HAV I+G+G E G+ YW+ NSWG WG+
Sbjct: 136 ALEAAGYNFQHYSSGIFT----GPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEE 191
Query: 70 GLFKIRRGTDES 81
G +I+R
Sbjct: 192 GYMRIQRNVGGV 203
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 70.7 bits (174), Expect = 4e-15
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 14 AIEA-HQDLIIYKKGVYQHTVGEMSGG---HAVKIIGWGVEDGVKYWLCVNSWGELWGDG 69
+E+ + +YK G+++ G AV +G+G G Y L NSWG WG+
Sbjct: 239 VVESKGRPFQLYKGGIFE----GPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEK 294
Query: 70 GLFKIRRGTD 79
G +I+R
Sbjct: 295 GYIRIKRAPG 304
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 69.1 bits (170), Expect = 4e-15
Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 9 GSIVAAIEA--HQDLIIYKKGVYQHTV-GEMSGGHAVKIIGWGVEDGVKYWLCVNSWGEL 65
+I I Y G HAV I+G+ GV YW+ NSW
Sbjct: 136 SAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTN 195
Query: 66 WGDGGLFKIRRGTD 79
WGD G D
Sbjct: 196 WGDNGYGYFAANID 209
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP:
d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 69.1 bits (170), Expect = 4e-15
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 14 AIEA-HQDLIIYKKGVYQHTVGEMSGG---HAVKIIGWGVEDGVKYWLCVNSWGELWGDG 69
+EA + +YK GV+ G HAV +G+G DG Y + NSWG WG+
Sbjct: 133 LVEAGGKPFQLYKSGVFD----GPCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEK 188
Query: 70 GLFKIRRGTD 79
G +++R +
Sbjct: 189 GYMRLKRQSG 198
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A
{Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 69.6 bits (171), Expect = 4e-15
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 14 AIEAHQDLIIYKKGVYQHTV--GEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGL 71
+I+A D Y G+Y H V I+G+G EDGV YW+ NSWGE WG G
Sbjct: 141 SIDAK-DFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGY 199
Query: 72 FKIRRGTD 79
+I+R T
Sbjct: 200 IRIQRNTG 207
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 70.4 bits (173), Expect = 5e-15
Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 9 GSIVAAIEA--HQDLIIYKKGVYQHTV-GEMSGGHAVKIIGWGVEDGVKYWLCVNSWGEL 65
+I I Y G HAV I+G+ GV YW+ NSW
Sbjct: 216 SAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTN 275
Query: 66 WGDGGLFKIRRGTD 79
WGD G D
Sbjct: 276 WGDNGYGYFAANID 289
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 69.1 bits (170), Expect = 5e-15
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 14 AIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLF 72
++A +D +Y+ G++ + +S HA+ ++G+G E+ +W+ NSWG+ WG+ G
Sbjct: 135 TMDAAGRDFQLYRSGIFTGSCN-ISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYI 193
Query: 73 KIRRGTD 79
+ R +
Sbjct: 194 RAERNIE 200
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD,
L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 68.7 bits (169), Expect = 5e-15
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 14 AIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLF 72
+EA Y G++ G + H V I+G+G + G YW+ NSWG+ WG+ G
Sbjct: 132 TVEAAGAPFQHYSSGIFTGPCGT-AQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYI 190
Query: 73 KIRRGTD 79
+ R
Sbjct: 191 WMERNVA 197
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET: O64;
1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 68.3 bits (168), Expect = 8e-15
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 5 IFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGG------HAVKIIGWGVEDGVKYWL 57
+ + G + ++A H +Y+ GVY H V ++G+G +G +YWL
Sbjct: 129 VANKGPVSVGVDARHPSFFLYRSGVY------YEPSCTQNVNHGVLVVGYGDLNGKEYWL 182
Query: 58 CVNSWGELWGDGGLFKIRRGTD 79
NSWG +G+ G ++ R
Sbjct: 183 VKNSWGHNFGEEGYIRMARNKG 204
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 69.6 bits (171), Expect = 8e-15
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 5 IFHFGSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGG-------HAVKIIGWGVEDGVKYW 56
+ + G + ++A H +Y+ GVY H V ++G+G +G +YW
Sbjct: 226 VANKGPVSVGVDARHPSFFLYRSGVY-------YEPSCTQNVNHGVLVVGYGDLNGKEYW 278
Query: 57 LCVNSWGELWGDGGLFKIRRGTD 79
L NSWG +G+ G ++ R
Sbjct: 279 LVKNSWGHNFGEEGYIRMARNKG 301
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 67.9 bits (167), Expect = 1e-14
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 14 AIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDGGLFK 73
A++A + Y GV V E H V ++G+ V YW+ NSW WG+ G +
Sbjct: 138 AVDAS-SWMTYTGGVMTSCVSE-QLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIR 195
Query: 74 IRRGT 78
I +G+
Sbjct: 196 IAKGS 200
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 66.5 bits (163), Expect = 6e-14
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 14 AIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVED----------GVKYWLCVNSWG 63
+I A D Y+ G Y G + HAV ++G+G++D Y++ NSWG
Sbjct: 151 SIAASDDFAFYRGGFYDGECGA-APNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWG 209
Query: 64 ELWGDGGLFKIRRGTDESR 82
WG+GG + + +
Sbjct: 210 SDWGEGGYINLETDENGYK 228
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular
interaction, HY hydrolase inhibitor complex; 2.20A
{Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A
3bpf_A* 3pnr_A
Length = 241
Score = 66.1 bits (162), Expect = 7e-14
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 11 IVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGV----------KYWLCVN 60
I ++ D YK+G++ G+ HAV ++G+G+++ V Y++ N
Sbjct: 146 ISISVAVSDDFAFYKEGIFDGECGDQLN-HAVMLVGFGMKEIVNPLTKKGEKHYYYIIKN 204
Query: 61 SWGELWGDGGLFKIRRGTD 79
SWG+ WG+ G I
Sbjct: 205 SWGQQWGERGFINIETDES 223
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 66.1 bits (162), Expect = 1e-13
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 7 HFGSIVAAIEA-HQDLIIYKKGVYQHTV-GEMSGGHAVKIIGWGVE----DGVKYWLCVN 60
G I AI+A H+ + YK+G+Y H V ++G+G E D KYWL N
Sbjct: 224 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 283
Query: 61 SWGELWGDGGLFKIRRGTD 79
SWGE WG GG K+ +
Sbjct: 284 SWGEEWGMGGYVKMAKDRR 302
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 64.6 bits (158), Expect = 3e-13
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 14 AIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGV-EDGVKYWLCVNSWGELWGDGGL 71
A+EA + + Y +GV+ G H V ++G+GV EDG YW NSWG WG+ G
Sbjct: 141 AVEASGKAFMFYSEGVFTGECGTELD-HGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGY 199
Query: 72 FKIRRGTD 79
++ + +
Sbjct: 200 IRVEKDSG 207
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 63.7 bits (156), Expect = 5e-13
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 14 AIEA-HQDLIIYKKGVYQHTVGEMSGG------HAVKIIGWGVE-DGVKYWLCVNSWGEL 65
AI+A D Y +GV+ +G H V I+G+G DG KYW NSWG
Sbjct: 136 AIDAGGSDFQFYSEGVF-------TGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPE 188
Query: 66 WGDGGLFKIRRGTDES 81
WG+ G ++ RG +
Sbjct: 189 WGEKGYIRMERGISDK 204
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB;
0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 62.9 bits (154), Expect = 8e-13
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 11 IVAAIEA-HQDLIIYKKGVYQHTV-GEMSGGHAVKIIGWGVE----DGVKYWLCVNSWGE 64
I AI+A H+ + YK+G+Y H V ++G+G E D KYWL NSWGE
Sbjct: 132 ISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGE 191
Query: 65 LWGDGGLFKIRRGTD 79
WG GG K+ +
Sbjct: 192 EWGMGGYVKMAKDRR 206
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 61.8 bits (151), Expect = 2e-12
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 11 IVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGV--EDGVKYWLCVNSWGELWG 67
+ AIEA Y +GV+ + G H V ++G+G E +W+ NSWG WG
Sbjct: 138 VSIAIEADQMPFQFYHEGVFDASCGT-DLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWG 196
Query: 68 DGGLFKIRRGTDES 81
G + E
Sbjct: 197 RDGYMYMAMHKGEE 210
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP,
cysteine protease, allergen, protease, thiol protease;
1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B
3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A*
1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A*
5pad_A* 6pad_A* ...
Length = 212
Score = 60.2 bits (147), Expect = 7e-12
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 11 IVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDG 69
+ +EA +D +Y+ G++ G HAV +G+G Y L NSWG WG+
Sbjct: 130 VSVVLEAAGKDFQLYRGGIFVGPCGNKVD-HAVAAVGYGP----NYILIKNSWGTGWGEN 184
Query: 70 GLFKIRRGTD 79
G +I+RGT
Sbjct: 185 GYIRIKRGTG 194
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase;
HET: E64 SO4; 1.87A {Carica candamarcensis}
Length = 213
Score = 60.2 bits (147), Expect = 8e-12
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 11 IVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDG 69
+ +EA + Y+ G++ G S HAV +G+G Y L NSWG WG+G
Sbjct: 130 VSIVVEAKGRAFQNYRGGIFAGPCGT-SIDHAVAAVGYGN----DYILIKNSWGTGWGEG 184
Query: 70 GLFKIRRGTD 79
G +I+RG+
Sbjct: 185 GYIRIKRGSG 194
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET:
E64; 2.10A {Jacaratia mexicana}
Length = 214
Score = 59.0 bits (144), Expect = 2e-11
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 11 IVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWGDG 69
+ ++ + YK G+Y+ G + HAV +G+G Y L NSWG WG+
Sbjct: 130 VSVVTDSRGRGFQFYKGGIYEGPCGT-NTDHAVTAVGYGK----TYLLLKNSWGPNWGEK 184
Query: 70 GLFKIRRGTDESR 82
G +I+R + S+
Sbjct: 185 GYIRIKRASGRSK 197
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 57.9 bits (140), Expect = 6e-11
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 9 GSIVAAIEA-HQDLIIYK-KGVYQHTVGEMSGG---HAVKIIGWGVE-DGVKYWLCVNSW 62
+ I +Y G++ + H V I+G+G YW+ NSW
Sbjct: 126 QPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSW 185
Query: 63 GELWGDGGLFKIRRGTD 79
G WG G IRR T+
Sbjct: 186 GTEWGIDGYILIRRNTN 202
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 53.4 bits (129), Expect = 2e-09
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 9 GSIVAAIEA-HQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNSWGELWG 67
AI+A Y G++ G H V I+G+ YW+ NSWG WG
Sbjct: 126 QPSTVAIDASSAQFQQYSSGIFSGPCGT-KLNHGVTIVGYQA----NYWIVRNSWGRYWG 180
Query: 68 DGGLFKIRRGTDE 80
+ G ++ R
Sbjct: 181 EKGYIRMLRVGGC 193
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural
genomics, JO center for structural genomics, JCSG; HET:
MSE; 2.23A {Parabacteroides distasonis}
Length = 383
Score = 41.4 bits (96), Expect = 5e-05
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 34 GEMSGGHAVKIIGWGV-EDGVKYWLCVNSWGELWGDGGLFKI 74
E + H ++I G ++G +Y++ NSWG G++
Sbjct: 312 YETTDDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYA 353
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 33.2 bits (75), Expect = 0.033
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 34 GEMSGGHAVKIIGWGVED----GVKYWLCVNSWGELWGDGGLF 72
GE HA+ +D W NSWGE G G
Sbjct: 365 GESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1
protease, hydrolase; 1.73A {Saccharomyces cerevisiae}
PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A
1gcb_A
Length = 457
Score = 32.0 bits (72), Expect = 0.079
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 34 GEMSGGHAVKIIGWGVEDG---VKYWLCVNSWGELWGDGGLF 72
E A+ I G V++ + NSWG+ G GL+
Sbjct: 367 HESLMTAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLY 408
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.24
Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 59/147 (40%)
Query: 73 KIRRGTDESRIE------SFQ-----VSA-----------GRVDRDRSSDLEEFE----- 105
K G D+SRI F V++ +++D + F
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 106 ---YDT----DTTIESSSDTKRAFCRCVLDNTGPC---------LLYLLRF----MNKI- 144
YDT D + S S ++R C++ P ++L F + +
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERI-VDCII--RLPVKWETTTQFKATHILDFGPGGASGLG 513
Query: 145 ILIIPTTSNLNG-----VVVSTVDSEP 166
+L T N +G +V T+D P
Sbjct: 514 VL---THRNKDGTGVRVIVAGTLDINP 537
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid,
hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1
d.17.1.4
Length = 367
Score = 26.9 bits (58), Expect = 3.7
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 2 QLEIFHFGSIVAAIEAHQDLIIYKKGVYQHTVGEMSGGHAVKIIGWGVEDGVKYWLCVNS 61
Q + + + + + ++I + V Q+ GHA+ ++G + + + N
Sbjct: 269 QEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDP-HLGHALAVVGNAKINDQEKLIYWNP 327
Query: 62 W 62
W
Sbjct: 328 W 328
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 26.1 bits (58), Expect = 7.7
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 3/16 (18%)
Query: 64 ELWGDGGLFKIRRGTD 79
E++ DGG +RRGTD
Sbjct: 405 EVFVDGG---VRRGTD 417
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton,
microtubule, CESG, structural genomics, protein
structure initiative, PSI; NMR {Caenorhabditis elegans}
SCOP: d.15.1.1
Length = 122
Score = 24.9 bits (54), Expect = 9.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 79 DESRIESFQVSAGRVDRDRSSDLEEFEYDTDTTIESSSDTKRAF 122
D RI + V+ G D S +E++E +D T +D+ RA+
Sbjct: 77 DGYRIHAVDVTGGNEDFKDESMVEKYEM-SDDTYGKRTDSVRAW 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.435
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,754,054
Number of extensions: 157074
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 52
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.3 bits)