Query psy10828
Match_columns 245
No_of_seqs 181 out of 1168
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:31:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0480|consensus 100.0 4.3E-59 9.4E-64 455.4 12.6 219 19-245 376-617 (764)
2 COG1241 MCM2 Predicted ATPase 100.0 3.3E-58 7.2E-63 457.4 11.8 230 8-245 304-566 (682)
3 KOG0481|consensus 100.0 2.1E-56 4.6E-61 429.1 11.1 220 18-245 361-613 (729)
4 KOG0479|consensus 100.0 2.5E-55 5.5E-60 426.1 10.8 218 19-245 332-616 (818)
5 PF00493 MCM: MCM2/3/5 family 100.0 6.6E-56 1.4E-60 410.3 4.5 221 17-245 53-300 (331)
6 KOG0482|consensus 100.0 3.3E-53 7.1E-58 406.8 8.3 218 19-245 373-612 (721)
7 KOG0478|consensus 100.0 2.8E-51 6.1E-56 402.9 11.2 217 19-245 460-698 (804)
8 KOG0477|consensus 100.0 6.9E-49 1.5E-53 383.3 8.4 219 19-245 480-731 (854)
9 PTZ00111 DNA replication licen 100.0 9.3E-48 2E-52 390.9 14.0 222 17-245 488-778 (915)
10 smart00350 MCM minichromosome 100.0 2.2E-42 4.7E-47 336.1 15.5 219 19-245 234-478 (509)
11 PF01078 Mg_chelatase: Magnesi 99.6 8E-16 1.7E-20 135.2 4.7 98 53-160 92-202 (206)
12 PRK09862 putative ATP-dependen 99.5 6.4E-15 1.4E-19 144.3 6.0 96 57-161 283-389 (506)
13 TIGR00368 Mg chelatase-related 99.5 3E-14 6.6E-19 139.3 9.1 154 53-224 281-461 (499)
14 COG0606 Predicted ATPase with 99.4 3E-14 6.5E-19 137.7 2.9 93 62-161 275-380 (490)
15 TIGR02442 Cob-chelat-sub cobal 99.3 5.5E-12 1.2E-16 126.4 8.5 149 54-227 112-268 (633)
16 TIGR02031 BchD-ChlD magnesium 99.2 2.8E-11 6E-16 120.6 7.9 149 53-227 69-222 (589)
17 PRK13406 bchD magnesium chelat 98.9 1.3E-09 2.8E-14 108.8 5.0 90 56-163 81-172 (584)
18 TIGR02030 BchI-ChlI magnesium 98.9 6.5E-09 1.4E-13 97.5 8.9 148 54-226 117-272 (337)
19 PRK13407 bchI magnesium chelat 98.8 1.5E-08 3.3E-13 95.0 8.4 150 54-227 114-270 (334)
20 CHL00081 chlI Mg-protoporyphyr 98.7 4.6E-08 1E-12 92.3 7.6 148 54-227 130-286 (350)
21 TIGR00764 lon_rel lon-related 98.6 6.7E-08 1.5E-12 97.0 8.1 141 62-245 209-365 (608)
22 COG1239 ChlI Mg-chelatase subu 98.6 1.8E-07 3.9E-12 89.9 8.2 95 55-171 131-229 (423)
23 PRK13765 ATP-dependent proteas 97.9 4.4E-05 9.6E-10 77.3 8.7 159 39-245 191-374 (637)
24 PF07726 AAA_3: ATPase family 97.6 7.7E-05 1.7E-09 61.7 3.9 76 55-151 52-129 (131)
25 TIGR01650 PD_CobS cobaltochela 96.8 0.014 3.1E-07 55.0 11.4 97 62-166 124-225 (327)
26 TIGR02640 gas_vesic_GvpN gas v 96.7 0.01 2.2E-07 53.4 8.9 91 62-169 95-193 (262)
27 PF07728 AAA_5: AAA domain (dy 96.5 0.0021 4.4E-08 51.4 3.0 81 52-151 49-139 (139)
28 COG0714 MoxR-like ATPases [Gen 96.3 0.038 8.2E-07 51.1 10.3 88 56-161 100-189 (329)
29 PRK13531 regulatory ATPase Rav 96.0 0.083 1.8E-06 52.5 11.5 152 62-244 101-257 (498)
30 TIGR02902 spore_lonB ATP-depen 96.0 0.033 7.2E-07 55.4 8.9 144 62-244 167-329 (531)
31 PF05496 RuvB_N: Holliday junc 95.6 0.073 1.6E-06 48.1 8.8 100 69-218 100-208 (233)
32 smart00763 AAA_PrkA PrkA AAA d 95.1 0.056 1.2E-06 51.7 6.6 118 63-203 229-353 (361)
33 COG1067 LonB Predicted ATP-dep 93.8 0.17 3.8E-06 51.8 7.1 102 18-128 170-286 (647)
34 PHA02244 ATPase-like protein 92.9 0.12 2.6E-06 49.8 4.2 80 63-153 171-255 (383)
35 TIGR02880 cbbX_cfxQ probable R 92.7 0.36 7.8E-06 44.1 6.9 126 66-223 117-252 (284)
36 TIGR02974 phageshock_pspF psp 92.7 0.1 2.2E-06 48.9 3.2 76 62-153 85-164 (329)
37 CHL00181 cbbX CbbX; Provisiona 92.2 0.39 8.4E-06 44.1 6.4 127 66-223 118-253 (287)
38 PRK11608 pspF phage shock prot 91.8 0.21 4.5E-06 46.5 4.2 76 62-153 92-171 (326)
39 PRK11361 acetoacetate metaboli 91.0 0.3 6.4E-06 46.5 4.4 57 62-128 229-288 (457)
40 TIGR02881 spore_V_K stage V sp 91.0 2.3 5E-05 37.9 9.9 72 66-158 101-176 (261)
41 PRK00080 ruvB Holliday junctio 90.9 0.9 1.9E-05 41.9 7.4 74 69-163 101-182 (328)
42 TIGR02903 spore_lon_C ATP-depe 90.4 1.3 2.8E-05 45.0 8.6 147 62-244 257-427 (615)
43 PRK10787 DNA-binding ATP-depen 89.9 0.45 9.8E-06 49.8 5.0 81 74-174 422-506 (784)
44 PRK15424 propionate catabolism 89.6 0.49 1.1E-05 47.5 4.8 57 62-128 314-373 (538)
45 PRK10365 transcriptional regul 88.5 0.72 1.6E-05 43.6 4.9 57 62-128 225-284 (441)
46 TIGR02915 PEP_resp_reg putativ 88.3 0.76 1.7E-05 43.7 5.0 57 62-128 225-284 (445)
47 COG2204 AtoC Response regulato 87.7 0.54 1.2E-05 46.5 3.6 63 54-127 221-285 (464)
48 TIGR00635 ruvB Holliday juncti 86.5 3.6 7.8E-05 37.0 8.0 75 69-164 80-162 (305)
49 PRK15115 response regulator Gl 86.0 1.2 2.7E-05 42.3 5.0 56 62-127 220-278 (444)
50 PRK05022 anaerobic nitric oxid 85.3 1.4 3E-05 43.5 5.1 57 62-128 273-332 (509)
51 TIGR01817 nifA Nif-specific re 85.2 1.5 3.2E-05 43.4 5.2 77 62-154 282-362 (534)
52 PRK05342 clpX ATP-dependent pr 84.7 3.1 6.8E-05 40.4 7.1 57 66-127 169-239 (412)
53 TIGR01818 ntrC nitrogen regula 84.7 2.6 5.7E-05 40.2 6.5 57 62-128 220-279 (463)
54 PRK11388 DNA-binding transcrip 83.1 2.3 5E-05 42.9 5.7 57 62-128 408-467 (638)
55 TIGR03346 chaperone_ClpB ATP-d 82.8 5.1 0.00011 42.3 8.2 89 74-173 673-775 (852)
56 PRK10923 glnG nitrogen regulat 82.1 1.9 4.2E-05 41.3 4.5 76 62-153 224-303 (469)
57 PRK11034 clpA ATP-dependent Cl 80.6 4.1 8.9E-05 42.6 6.5 94 70-174 557-666 (758)
58 PF00158 Sigma54_activat: Sigm 79.6 1.6 3.5E-05 36.9 2.7 57 62-128 85-144 (168)
59 TIGR02329 propionate_PrpR prop 79.4 3 6.5E-05 41.8 4.9 57 62-128 299-358 (526)
60 PRK10820 DNA-binding transcrip 77.6 3.6 7.8E-05 40.8 4.9 77 62-154 290-370 (520)
61 PF07724 AAA_2: AAA domain (Cd 77.6 1.6 3.5E-05 37.0 2.1 84 62-154 60-171 (171)
62 COG3829 RocR Transcriptional r 76.8 5.5 0.00012 40.3 5.8 57 62-127 332-390 (560)
63 cd00009 AAA The AAA+ (ATPases 75.5 3.1 6.7E-05 31.4 3.0 65 69-157 83-149 (151)
64 TIGR02639 ClpA ATP-dependent C 75.2 3.2 7E-05 42.9 4.0 95 70-175 553-663 (731)
65 TIGR00382 clpX endopeptidase C 72.3 8.7 0.00019 37.5 5.9 60 63-127 174-247 (413)
66 PF08298 AAA_PrkA: PrkA AAA do 71.9 0.96 2.1E-05 43.4 -0.7 83 56-156 222-307 (358)
67 PRK15429 formate hydrogenlyase 69.2 5.5 0.00012 40.7 4.0 58 62-128 462-521 (686)
68 PHA01747 putative ATP-dependen 68.2 16 0.00035 35.7 6.7 156 19-203 189-369 (425)
69 TIGR00763 lon ATP-dependent pr 65.2 8.3 0.00018 40.2 4.4 83 70-171 414-502 (775)
70 TIGR03345 VI_ClpV1 type VI sec 63.4 8.9 0.00019 40.7 4.2 93 70-174 668-780 (852)
71 CHL00095 clpC Clp protease ATP 61.5 12 0.00025 39.4 4.7 91 74-175 617-733 (821)
72 COG5271 MDN1 AAA ATPase contai 59.1 16 0.00035 42.7 5.2 85 54-156 1279-1371(4600)
73 COG2255 RuvB Holliday junction 57.1 69 0.0015 30.5 8.4 123 68-213 101-243 (332)
74 KOG2545|consensus 51.9 25 0.00053 35.0 4.8 39 191-229 459-497 (543)
75 PRK10865 protein disaggregatio 50.9 47 0.001 35.3 7.1 95 70-175 670-780 (857)
76 COG3604 FhlA Transcriptional r 49.2 13 0.00029 37.5 2.6 64 62-134 309-381 (550)
77 PRK15455 PrkA family serine pr 48.2 7.1 0.00015 40.2 0.5 83 55-154 243-327 (644)
78 PF13654 AAA_32: AAA domain; P 43.3 12 0.00027 37.4 1.3 81 21-109 276-367 (509)
79 PRK05201 hslU ATP-dependent pr 42.6 87 0.0019 31.1 7.0 126 65-223 243-382 (443)
80 TIGR00390 hslU ATP-dependent p 39.1 91 0.002 31.0 6.6 124 68-223 245-380 (441)
81 PRK14962 DNA polymerase III su 33.5 1.1E+02 0.0023 30.4 6.2 53 68-153 115-170 (472)
82 PF13337 Lon_2: Putative ATP-d 30.8 42 0.00092 33.4 2.8 196 17-227 205-437 (457)
83 COG0466 Lon ATP-dependent Lon 28.5 62 0.0013 34.2 3.6 80 62-157 403-493 (782)
84 cd01892 Miro2 Miro2 subfamily. 27.7 31 0.00067 28.2 1.1 19 18-36 1-19 (169)
85 PF12775 AAA_7: P-loop contain 26.3 73 0.0016 29.0 3.4 72 90-175 122-194 (272)
86 PF05673 DUF815: Protein of un 24.0 2.9E+02 0.0063 25.4 6.7 106 74-204 112-229 (249)
87 COG0542 clpA ATP-binding subun 23.5 1.6E+02 0.0035 31.4 5.6 157 2-174 504-705 (786)
88 TIGR02639 ClpA ATP-dependent C 23.3 1.7E+02 0.0037 30.4 5.8 94 118-225 311-406 (731)
89 PRK13342 recombination factor 21.3 3.3E+02 0.0071 26.0 7.0 69 70-175 92-165 (413)
No 1
>KOG0480|consensus
Probab=100.00 E-value=4.3e-59 Score=455.43 Aligned_cols=219 Identities=30% Similarity=0.461 Sum_probs=198.2
Q ss_pred cceeeEEEeCCccCCCCC--------CCCCC----------CcccccccCcccceEEEEecccchhhcccCceeccCCCC
Q psy10828 19 RNTSKTVTLGGTRTGPDE--------PPAGP----------GAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSPQ 80 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~--------~~~~~----------~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~~ 80 (245)
|--+|+.+||-|-|++.| .|-++ ||+|++++ |-.+|++.| |||||||||+||||+++|+
T Consensus 376 RGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvk-D~esgdf~i--EAGALmLADnGICCIDEFD 452 (764)
T KOG0480|consen 376 RGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVK-DEESGDFTI--EAGALMLADNGICCIDEFD 452 (764)
T ss_pred cCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEe-cCCCCceee--ecCcEEEccCceEEechhc
Confidence 677999999999999988 45544 99998887 446778999 9999999999999999999
Q ss_pred cCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEecC
Q psy10828 81 KRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLLD 159 (245)
Q Consensus 81 k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D 159 (245)
||. ..++.+||||| |||||||||||++|+||||+||||||||. ||||..+++.+|+++++||||||||+|++.|
T Consensus 453 KMd----~~dqvAihEAM-EQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD 527 (764)
T KOG0480|consen 453 KMD----VKDQVAIHEAM-EQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLD 527 (764)
T ss_pred ccC----hHhHHHHHHHH-HhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEec
Confidence 872 13799999999 99999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHhhcCC----CCccc
Q psy10828 160 SKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQRKADMR----NAART 235 (245)
Q Consensus 160 ~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR~~~P~LS~EA~~~I~~yY~~lR~~~~~----~~~~i 235 (245)
+.++..|..||.||+..|+.-++......+|+.+.+|+||.|||+++|.||.||.+.|.++|+.+|+.+.. ++.+|
T Consensus 528 ~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~I 607 (764)
T KOG0480|consen 528 DCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRI 607 (764)
T ss_pred CCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccc
Confidence 99999999999999999975433222335899999999999999999999999999999999999998742 35699
Q ss_pred chhhhhhhcC
Q psy10828 236 TVRLLESLIR 245 (245)
Q Consensus 236 TvRqLESLIR 245 (245)
|+||||||||
T Consensus 608 TvRqLESlIR 617 (764)
T KOG0480|consen 608 TVRQLESLIR 617 (764)
T ss_pred cHHHHHHHHH
Confidence 9999999998
No 2
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-58 Score=457.43 Aligned_cols=230 Identities=30% Similarity=0.440 Sum_probs=199.1
Q ss_pred eccccccccc--ccceeeEEEeCCccCCCCC--------CC----------CCCCcccccccCcccceEEEEecccchhh
Q psy10828 8 SRVGKFSADA--ERNTSKTVTLGGTRTGPDE--------PP----------AGPGAVSKARGPQFGLIELEIFSAAGEIF 67 (245)
Q Consensus 8 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~----------~~~~~~a~~~~~~~g~~e~~i~~~aGa~v 67 (245)
+-|+|...|- =|-.||+..+|-|-|++.| .| -++||+|++++|.. +|+|.+ ||||||
T Consensus 304 gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~-tge~~L--eaGALV 380 (682)
T COG1241 304 GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKV-TGEWVL--EAGALV 380 (682)
T ss_pred CCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccC-CCeEEE--eCCEEE
Confidence 3445544432 3677999999999999988 22 35699998888887 779999 999999
Q ss_pred cccCceeccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccC
Q psy10828 68 QKKKAIISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASP 146 (245)
Q Consensus 68 La~~Gvide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~ 146 (245)
|||+||||+++|+|| .+.++.+||||| |||||||+||||+++|||||||+|||||+ |+||+++++.+||+||++
T Consensus 381 lAD~Gv~cIDEfdKm----~~~dr~aihEaM-EQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~ 455 (682)
T COG1241 381 LADGGVCCIDEFDKM----NEEDRVAIHEAM-EQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAP 455 (682)
T ss_pred EecCCEEEEEeccCC----ChHHHHHHHHHH-HhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChh
Confidence 999999999999887 245899999999 99999999999999999999999999999 999999999999999999
Q ss_pred ccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCC----CC---CCCCHHHHHHHHHHhhc-cCCCCCHHHHHHHH
Q psy10828 147 LLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQ----AT---SLWDVEKLQAYFYLIKG-LRPQMTLEANRILT 218 (245)
Q Consensus 147 LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~----~~---~~l~~e~LrkYIayAR~-~~P~LS~EA~~~I~ 218 (245)
|||||||||+++|.++++.|+.+|+||+..|........ .. ..=+.++||+||+|||+ +.|+||+||.+.|.
T Consensus 456 lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~ 535 (682)
T COG1241 456 LLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELE 535 (682)
T ss_pred HHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHH
Confidence 999999999999999999999999999999964321000 00 00168999999999996 89999999999999
Q ss_pred HHHHHHHhhcC----CCCcccchhhhhhhcC
Q psy10828 219 RYYQAQRKADM----RNAARTTVRLLESLIR 245 (245)
Q Consensus 219 ~yY~~lR~~~~----~~~~~iTvRqLESLIR 245 (245)
+||+.+|+... .+..|||+|||||+||
T Consensus 536 ~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiR 566 (682)
T COG1241 536 DYYVEMRKKSALVEEKRTIPITARQLESIIR 566 (682)
T ss_pred HHHHHhhhccccccccCcccccHHHHHHHHH
Confidence 99999999653 4668999999999998
No 3
>KOG0481|consensus
Probab=100.00 E-value=2.1e-56 Score=429.12 Aligned_cols=220 Identities=25% Similarity=0.366 Sum_probs=197.4
Q ss_pred ccceeeEEEeCCccCCCCC--------CCCCC----------CcccccccCcccceEEEEecccchhhcccCceeccCCC
Q psy10828 18 ERNTSKTVTLGGTRTGPDE--------PPAGP----------GAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSP 79 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~--------~~~~~----------~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~ 79 (245)
-|--||..-||.|-|-+.| +|+|+ ||+|++.+ |.++-|+-+ |+||+|||||||+|+++|
T Consensus 361 lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~R-D~~tReFyl--EGGAMVLADgGVvCIDEF 437 (729)
T KOG0481|consen 361 LRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIR-DPSTREFYL--EGGAMVLADGGVVCIDEF 437 (729)
T ss_pred eccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEe-cCCcceEEE--ecceEEEecCCEEEeehh
Confidence 3677999999999998888 66776 99997766 344557888 999999999999999999
Q ss_pred CcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEec
Q psy10828 80 QKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLL 158 (245)
Q Consensus 80 ~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~ 158 (245)
+|| .++|+.+||||| ||||||||||||.++||+||||+|||||. |+||..++..+||.+.+.+|||||+||+++
T Consensus 438 DKM----re~DRVAIHEAM-EQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVK 512 (729)
T KOG0481|consen 438 DKM----REDDRVAIHEAM-EQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVK 512 (729)
T ss_pred hcc----CchhhhHHHHHH-HhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEe
Confidence 998 467999999999 99999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCChhhhhhhhhhhhccCCCCC-----CCCCCCCCCCHHHHHHHHHHhh-ccCCCCCHHHHHHHHHHHHHHHhhc----
Q psy10828 159 DSKSEQWDKMVSNYILFGKRLGP-----SSNQATSLWDVEKLQAYFYLIK-GLRPQMTLEANRILTRYYQAQRKAD---- 228 (245)
Q Consensus 159 D~~~~~~D~~ia~hIl~~~~~~~-----~~~~~~~~l~~e~LrkYIayAR-~~~P~LS~EA~~~I~~yY~~lR~~~---- 228 (245)
|.++++.|..||+||++.|.... ........++.++||+||+||| +|.|.||++|.+.|+++|+.+|+.-
T Consensus 513 D~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e 592 (729)
T KOG0481|consen 513 DEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHE 592 (729)
T ss_pred ccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhh
Confidence 99999999999999999986421 1122456899999999999999 7999999999999999999999752
Q ss_pred ----CCCCcccchhhhhhhcC
Q psy10828 229 ----MRNAARTTVRLLESLIR 245 (245)
Q Consensus 229 ----~~~~~~iTvRqLESLIR 245 (245)
.++++|||+||||++||
T Consensus 593 ~~s~~rssIPITVRQLEAIiR 613 (729)
T KOG0481|consen 593 QDSDKRSSIPITVRQLEAIIR 613 (729)
T ss_pred hcccccCCCceeHHHHHHHHH
Confidence 34679999999999998
No 4
>KOG0479|consensus
Probab=100.00 E-value=2.5e-55 Score=426.06 Aligned_cols=218 Identities=28% Similarity=0.435 Sum_probs=195.8
Q ss_pred cceeeEEEeCCccCCCCC-------------------CCCCCCcccccccCcccceEEEEecccchhhcccCceeccCCC
Q psy10828 19 RNTSKTVTLGGTRTGPDE-------------------PPAGPGAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSP 79 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~ 79 (245)
|--||+.-||-|-+-+.| + -|+||+|++. .+..|||..+ ||||+||||+||+|+++|
T Consensus 332 RGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGS-SGVGLTAAVT-tD~eTGERRL--EAGAMVLADRGVVCIDEF 407 (818)
T KOG0479|consen 332 RGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGS-SGVGLTAAVT-TDQETGERRL--EAGAMVLADRGVVCIDEF 407 (818)
T ss_pred ccceeEEEecCchHHHHHHHHHHHhcccccccccCCCC-CCccceeEEe-eccccchhhh--hcCceEEccCceEEehhc
Confidence 556899999999877766 3 6899999554 4778999999 999999999999999999
Q ss_pred CcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEec
Q psy10828 80 QKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLL 158 (245)
Q Consensus 80 ~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~ 158 (245)
+|| ++.|+.+|||+| |||+|+||||||+++|||||||||||||. |+||.+++..+||.||.+|||||||+|+++
T Consensus 408 DKM----sDiDRvAIHEVM-EQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~l 482 (818)
T KOG0479|consen 408 DKM----SDIDRVAIHEVM-EQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVL 482 (818)
T ss_pred ccc----cchhHHHHHHHH-hcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEe
Confidence 988 456999999999 99999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCChhhhhhhhhhhhccCCCC--C---------------------CC-------------------CCCCCCCCHHHHH
Q psy10828 159 DSKSEQWDKMVSNYILFGKRLG--P---------------------SS-------------------NQATSLWDVEKLQ 196 (245)
Q Consensus 159 D~~~~~~D~~ia~hIl~~~~~~--~---------------------~~-------------------~~~~~~l~~e~Lr 196 (245)
|..|.+.|++|++|||+.|++. . +. ....+.++.+|+|
T Consensus 483 D~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~r 562 (818)
T KOG0479|consen 483 DDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMR 562 (818)
T ss_pred ccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHHH
Confidence 9999999999999999998531 0 00 1234678999999
Q ss_pred HHHHHhhc-cCCCCCHHHHHHHHHHHHHHHhhcCC----CCcccchhhhhhhcC
Q psy10828 197 AYFYLIKG-LRPQMTLEANRILTRYYQAQRKADMR----NAARTTVRLLESLIR 245 (245)
Q Consensus 197 kYIayAR~-~~P~LS~EA~~~I~~yY~~lR~~~~~----~~~~iTvRqLESLIR 245 (245)
|||.|||. ++|+|+.||.+.|.+-|..+|+.+.+ ...|||.|+||.|||
T Consensus 563 KYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIR 616 (818)
T KOG0479|consen 563 KYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIR 616 (818)
T ss_pred HHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHH
Confidence 99999995 99999999999999999999998753 468999999999998
No 5
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=6.6e-56 Score=410.26 Aligned_cols=221 Identities=31% Similarity=0.467 Sum_probs=168.2
Q ss_pred cccceeeEEEeCCccCCCCC--------C----------CCCCCcccccccCcccceEEEEecccchhhcccCceeccCC
Q psy10828 17 AERNTSKTVTLGGTRTGPDE--------P----------PAGPGAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVS 78 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~--------~----------~~~~~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~ 78 (245)
..|+.+++.++|.+-||+.+ . .-+.||||++.++..+ ++|.+ +||++||||+||||+++
T Consensus 53 ~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~-~~~~l--eaGalvlad~GiccIDe 129 (331)
T PF00493_consen 53 RIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVT-GEWVL--EAGALVLADGGICCIDE 129 (331)
T ss_dssp EE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGT-SSECE--EE-HHHHCTTSEEEECT
T ss_pred ccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecccccc-ceeEE--eCCchhcccCceeeecc
Confidence 36999999999999999877 2 2345999988887654 55999 99999999999988888
Q ss_pred CCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEe
Q psy10828 79 PQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVL 157 (245)
Q Consensus 79 ~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l 157 (245)
++|+ .++++.+||||| |||+|||+|||++++|||||+|||||||. |+|++++++.+|+++|++|||||||||++
T Consensus 130 ~dk~----~~~~~~~l~eaM-Eqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l 204 (331)
T PF00493_consen 130 FDKM----KEDDRDALHEAM-EQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLL 204 (331)
T ss_dssp TTT------CHHHHHHHHHH-HCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC
T ss_pred cccc----cchHHHHHHHHH-HcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEe
Confidence 8877 234899999999 99999999999999999999999999999 99999999999999999999999999999
Q ss_pred cCCCChhhhhhhhhhhhccCCCCC----C-CCCCCCCCCHHHHHHHHHHhh-ccCCCCCHHHHHHHHHHHHHHHhhc--C
Q psy10828 158 LDSKSEQWDKMVSNYILFGKRLGP----S-SNQATSLWDVEKLQAYFYLIK-GLRPQMTLEANRILTRYYQAQRKAD--M 229 (245)
Q Consensus 158 ~D~~~~~~D~~ia~hIl~~~~~~~----~-~~~~~~~l~~e~LrkYIayAR-~~~P~LS~EA~~~I~~yY~~lR~~~--~ 229 (245)
.|.+++++|+.+|+||++.|.... + .+.....|+.++||+||+||| +++|+||+||.++|.+||+++|+.. .
T Consensus 205 ~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~ 284 (331)
T PF00493_consen 205 RDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSN 284 (331)
T ss_dssp --TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCH
T ss_pred ccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999986542 1 111235899999999999999 7999999999999999999999976 3
Q ss_pred CCCcccchhhhhhhcC
Q psy10828 230 RNAARTTVRLLESLIR 245 (245)
Q Consensus 230 ~~~~~iTvRqLESLIR 245 (245)
....++|+|+||||||
T Consensus 285 ~~~~~iT~R~LeSLIR 300 (331)
T PF00493_consen 285 NKSIPITIRQLESLIR 300 (331)
T ss_dssp SS-B-SSCCCCCHHHH
T ss_pred ccccccchhhHHHHHH
Confidence 4668999999999998
No 6
>KOG0482|consensus
Probab=100.00 E-value=3.3e-53 Score=406.84 Aligned_cols=218 Identities=23% Similarity=0.307 Sum_probs=194.6
Q ss_pred cceeeEEEeCCccCCCCC-------------------CCCCCCcccccccCcccceEEEEecccchhhcccCceeccCCC
Q psy10828 19 RNTSKTVTLGGTRTGPDE-------------------PPAGPGAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSP 79 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~ 79 (245)
|--||+.-.|.|-+-+.| + -|+||+|++.+ |.=|||..+ |+||+||||+||||+++|
T Consensus 373 RGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS-SGVGLTAAVmk-DpvTgEM~L--EGGALVLAD~GICCIDEf 448 (721)
T KOG0482|consen 373 RGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS-SGVGLTAAVMK-DPVTGEMVL--EGGALVLADGGICCIDEF 448 (721)
T ss_pred ecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC-Cccccchhhhc-CCCCCeeEe--ccceEEEccCceEeehhh
Confidence 556777777766555444 3 58999995554 333669999 999999999999999999
Q ss_pred CcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEec
Q psy10828 80 QKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLL 158 (245)
Q Consensus 80 ~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~ 158 (245)
+|| .+.|+.+|||+| ||||||||||||.++|||||||+|||||. |+||+..++.+||+||.+|||||||++++.
T Consensus 449 DKM----~e~DRtAIHEVM-EQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~ 523 (721)
T KOG0482|consen 449 DKM----DESDRTAIHEVM-EQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQ 523 (721)
T ss_pred hhh----hhhhhHHHHHHH-HhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhc
Confidence 988 356999999999 99999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHhhcC--CCCcccc
Q psy10828 159 DSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQRKADM--RNAARTT 236 (245)
Q Consensus 159 D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR~~~P~LS~EA~~~I~~yY~~lR~~~~--~~~~~iT 236 (245)
|.++.+.|+.||+||...|.+........++++.++||.||++||+.+|.++++..+.|...|+++|+... ....++|
T Consensus 524 D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~tt 603 (721)
T KOG0482|consen 524 DRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTT 603 (721)
T ss_pred cCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccC
Confidence 99999999999999999887765444567889999999999999999999999999999999999999873 3557899
Q ss_pred hhhhhhhcC
Q psy10828 237 VRLLESLIR 245 (245)
Q Consensus 237 vRqLESLIR 245 (245)
+|.|.+|+|
T Consensus 604 pRtLL~IlR 612 (721)
T KOG0482|consen 604 PRTLLGILR 612 (721)
T ss_pred HHHHHHHHH
Confidence 999999997
No 7
>KOG0478|consensus
Probab=100.00 E-value=2.8e-51 Score=402.91 Aligned_cols=217 Identities=29% Similarity=0.456 Sum_probs=194.3
Q ss_pred cceeeEEEeCCccCCCCC--------CCCC----------CCccc-ccccCcccceEEEEecccchhhcccCceeccCCC
Q psy10828 19 RNTSKTVTLGGTRTGPDE--------PPAG----------PGAVS-KARGPQFGLIELEIFSAAGEIFQKKKAIISSVSP 79 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~--------~~~~----------~~~~a-~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~ 79 (245)
|--|||.-+|-+-|++.| .|-| +|++| +.++++ |.+|.+ |.|||||+|+|+||+++|
T Consensus 460 R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~d--tkqlVL--esGALVLSD~GiCCIDEF 535 (804)
T KOG0478|consen 460 RGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPD--TRQLVL--ESGALVLSDNGICCIDEF 535 (804)
T ss_pred cccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCc--cceeee--ecCcEEEcCCceEEchhh
Confidence 556999999999999998 2233 49999 555555 569999 999999999999999999
Q ss_pred CcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEec
Q psy10828 80 QKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLL 158 (245)
Q Consensus 80 ~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~ 158 (245)
+|| .+..+..|||+| ||||||||||||.|+|||||||||||||. ++|++++++.+||+||++|||||||||+++
T Consensus 536 DKM----~dStrSvLhEvM-EQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylll 610 (804)
T KOG0478|consen 536 DKM----SDSTRSVLHEVM-EQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLL 610 (804)
T ss_pred hhh----hHHHHHHHHHHH-HHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEe
Confidence 988 356899999999 99999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHHHhhcCCCC-cccc
Q psy10828 159 DSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKG-LRPQMTLEANRILTRYYQAQRKADMRNA-ARTT 236 (245)
Q Consensus 159 D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR~-~~P~LS~EA~~~I~~yY~~lR~~~~~~~-~~iT 236 (245)
|.+|+..|+.|++||+..|-...+ ...+..|+.++|+.||+|||+ ++|.+++||.+.+..+|+.+|+...... ...|
T Consensus 611 D~~DE~~Dr~La~HivsLy~e~~~-~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat 689 (804)
T KOG0478|consen 611 DKPDERSDRRLADHIVALYPETGE-KQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITAT 689 (804)
T ss_pred cCcchhHHHHHHHHHHHhcccccc-cchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchh
Confidence 999999999999999998854332 234568999999999999995 9999999999999999999999875433 7789
Q ss_pred hhhhhhhcC
Q psy10828 237 VRLLESLIR 245 (245)
Q Consensus 237 vRqLESLIR 245 (245)
+||||||||
T Consensus 690 ~rQlesLiR 698 (804)
T KOG0478|consen 690 PRQLESLIR 698 (804)
T ss_pred HHHHHHHHH
Confidence 999999997
No 8
>KOG0477|consensus
Probab=100.00 E-value=6.9e-49 Score=383.26 Aligned_cols=219 Identities=26% Similarity=0.411 Sum_probs=192.1
Q ss_pred cceeeEEEeCCccCCCCC--------CC----------CCCCcccccccCcccceEEEEecccchhhcccCceeccCCCC
Q psy10828 19 RNTSKTVTLGGTRTGPDE--------PP----------AGPGAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSPQ 80 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~--------~~----------~~~~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~~ 80 (245)
|--||...+|-|-|++.| .| -.+||+|.++++- =++||++ |||||||||+|||++++|+
T Consensus 480 RGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdP-vtrEWTL--EaGALVLADkGvClIDEFD 556 (854)
T KOG0477|consen 480 RGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDP-VTREWTL--EAGALVLADKGVCLIDEFD 556 (854)
T ss_pred ccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCC-ccceeee--ccCeEEEccCceEEeehhh
Confidence 667899999999998887 11 2459999776643 3568999 9999999999998888888
Q ss_pred cCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEecC
Q psy10828 81 KRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLLD 159 (245)
Q Consensus 81 k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D 159 (245)
|| .+.|+.+||||| |||.|||+||||+++|+|||+||||+||. |+||+..++.+|.++..|+|||||++++++|
T Consensus 557 KM----ndqDRtSIHEAM-EQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD 631 (854)
T KOG0477|consen 557 KM----NDQDRTSIHEAM-EQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKD 631 (854)
T ss_pred hh----cccccchHHHHH-HhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeec
Confidence 77 244999999999 99999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCChhhhhhhhhhhhccCCC--CCC---C-------CCCCCCCCHHHHHHHHHHhh-ccCCCCCHHHHHHHHHHHHHHHh
Q psy10828 160 SKSEQWDKMVSNYILFGKRL--GPS---S-------NQATSLWDVEKLQAYFYLIK-GLRPQMTLEANRILTRYYQAQRK 226 (245)
Q Consensus 160 ~~~~~~D~~ia~hIl~~~~~--~~~---~-------~~~~~~l~~e~LrkYIayAR-~~~P~LS~EA~~~I~~yY~~lR~ 226 (245)
..|+..|+++|++|+.+|.- +.. . ...-.++++++|||||.||| +++|.|..--.+.+..-|..+|+
T Consensus 632 ~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRk 711 (854)
T KOG0477|consen 632 TVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRK 711 (854)
T ss_pred ccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh
Confidence 99999999999999988732 110 0 11125799999999999999 69999999999999999999999
Q ss_pred hcC-CCCcccchhhhhhhcC
Q psy10828 227 ADM-RNAARTTVRLLESLIR 245 (245)
Q Consensus 227 ~~~-~~~~~iTvRqLESLIR 245 (245)
.+- .++.|||+|++||+||
T Consensus 712 ES~~tGs~piTvRHieS~ir 731 (854)
T KOG0477|consen 712 ESMATGSLPITVRHIESMIR 731 (854)
T ss_pred hccccCCchhhHHHHHHHHH
Confidence 874 5679999999999997
No 9
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=9.3e-48 Score=390.94 Aligned_cols=222 Identities=21% Similarity=0.313 Sum_probs=191.2
Q ss_pred cccceeeEEEeCCccCCCCC------------------CCCCCCcccccccCcccceEEEEecccchhhcccCceeccCC
Q psy10828 17 AERNTSKTVTLGGTRTGPDE------------------PPAGPGAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVS 78 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~ 78 (245)
-=|.-++++.+|=+=||+.+ |+..+|++|.+...+.++|+|.+ +||++++|++|+||.++
T Consensus 488 ~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~l--e~GaLvlAdgGtL~IDE 565 (915)
T PTZ00111 488 NFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMI--QPGAVVLANGGVCCIDE 565 (915)
T ss_pred cccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccc--cCCcEEEcCCCeEEecc
Confidence 35888999999999999854 45666888876656667789999 99999999999988887
Q ss_pred CCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEe
Q psy10828 79 PQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVL 157 (245)
Q Consensus 79 ~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l 157 (245)
++++ ...++.+|||+| |||+|||+|+|+.++|+++|+||||+||+ |+||+++++.+|++||++|||||||||++
T Consensus 566 idkm----s~~~Q~aLlEaM-EqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l 640 (915)
T PTZ00111 566 LDKC----HNESRLSLYEVM-EQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLV 640 (915)
T ss_pred hhhC----CHHHHHHHHHHH-hCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEe
Confidence 7766 234799999999 99999999999999999999999999999 99999999999999999999999999999
Q ss_pred cCCCChhhhhhhhhhhhccCCCC----C---CC-----------------CCCCCCCCHHHHHHHHHHhh-ccCCCCCHH
Q psy10828 158 LDSKSEQWDKMVSNYILFGKRLG----P---SS-----------------NQATSLWDVEKLQAYFYLIK-GLRPQMTLE 212 (245)
Q Consensus 158 ~D~~~~~~D~~ia~hIl~~~~~~----~---~~-----------------~~~~~~l~~e~LrkYIayAR-~~~P~LS~E 212 (245)
+|.++++.|+.||+||++.|... . +. ......++.++||+||+||| +++|+||+|
T Consensus 641 ~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~e 720 (915)
T PTZ00111 641 LDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDE 720 (915)
T ss_pred cCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHH
Confidence 99999999999999999865210 0 00 00123589999999999999 599999999
Q ss_pred HHHHHHHHHHHHHhhc-------------------------CCCCcccchhhhhhhcC
Q psy10828 213 ANRILTRYYQAQRKAD-------------------------MRNAARTTVRLLESLIR 245 (245)
Q Consensus 213 A~~~I~~yY~~lR~~~-------------------------~~~~~~iTvRqLESLIR 245 (245)
|.++|.+||+.||+.. .....++|+||||||||
T Consensus 721 A~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIR 778 (915)
T PTZ00111 721 AKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIR 778 (915)
T ss_pred HHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHH
Confidence 9999999999999741 12357999999999998
No 10
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=2.2e-42 Score=336.06 Aligned_cols=219 Identities=28% Similarity=0.453 Sum_probs=187.9
Q ss_pred cceeeEEEeCCccCCCCC---------C---------CCCCCcccccccCcccceEEEEecccchhhcccCceeccCCCC
Q psy10828 19 RNTSKTVTLGGTRTGPDE---------P---------PAGPGAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSPQ 80 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~---------~---------~~~~~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~~ 80 (245)
|..+++..+|.+-||+++ | +.+.|+++...++. .+|+|.+ +||++++|++|+|+.++++
T Consensus 234 r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~-~~g~~~~--~~G~l~~A~~Gil~iDEi~ 310 (509)
T smart00350 234 RGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDP-ETREFTL--EGGALVLADNGVCCIDEFD 310 (509)
T ss_pred cccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEcc-CcceEEe--cCccEEecCCCEEEEechh
Confidence 556789999999999987 2 34556777554433 4568999 9999999999996666666
Q ss_pred cCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEecC
Q psy10828 81 KRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLLD 159 (245)
Q Consensus 81 k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D 159 (245)
++ ....+.+|||+| |||+|+|+|+|+.++||++|+||||+||+ |+||+.+++.+|++||++|||||||+|++.|
T Consensus 311 ~l----~~~~q~~L~e~m-e~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d 385 (509)
T smart00350 311 KM----DDSDRTAIHEAM-EQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLD 385 (509)
T ss_pred hC----CHHHHHHHHHHH-hcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecC
Confidence 55 124799999999 99999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCChhhhhhhhhhhhccCCCCC--CCCCCCCCCCHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHHHhhcCC----CC
Q psy10828 160 SKSEQWDKMVSNYILFGKRLGP--SSNQATSLWDVEKLQAYFYLIKG-LRPQMTLEANRILTRYYQAQRKADMR----NA 232 (245)
Q Consensus 160 ~~~~~~D~~ia~hIl~~~~~~~--~~~~~~~~l~~e~LrkYIayAR~-~~P~LS~EA~~~I~~yY~~lR~~~~~----~~ 232 (245)
.++.++|.+|++|+++.|.... ........|+.++|++||+|||+ ++|.||++|.++|.+||+++|+.... ..
T Consensus 386 ~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~ 465 (509)
T smart00350 386 EVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSS 465 (509)
T ss_pred CCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999999999998875321 11122357999999999999997 99999999999999999999986543 25
Q ss_pred cccchhhhhhhcC
Q psy10828 233 ARTTVRLLESLIR 245 (245)
Q Consensus 233 ~~iTvRqLESLIR 245 (245)
.++|+||||||||
T Consensus 466 ~~~t~R~l~sliR 478 (509)
T smart00350 466 IPITVRQLESIIR 478 (509)
T ss_pred cCcCHHHHHHHHH
Confidence 7899999999998
No 11
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.59 E-value=8e-16 Score=135.18 Aligned_cols=98 Identities=22% Similarity=0.295 Sum_probs=54.9
Q ss_pred cceEEEEecccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC--
Q psy10828 53 GLIELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-- 128 (245)
Q Consensus 53 g~~e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-- 128 (245)
|.+. .. +||++.|||+|| +||+..+++ ..+++|+++| |++.|.|.++|...++||++.++||+|||
T Consensus 92 Ggg~-~~--~PGeislAh~GVLflDE~~ef~~------~vld~Lr~pl-e~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpC 161 (206)
T PF01078_consen 92 GGGR-PP--RPGEISLAHRGVLFLDELNEFDR------SVLDALRQPL-EDGEVTISRAGGSVTYPARFLLVAAMNPCPC 161 (206)
T ss_dssp EEGG-GE--EE-CGGGGTTSEEEECETTTS-H------HHHHHHHHHH-HHSBEEEEETTEEEEEB--EEEEEEE-S---
T ss_pred CCCc-CC--CcCHHHHhcCCEEEechhhhcCH------HHHHHHHHHH-HCCeEEEEECCceEEEecccEEEEEeccccc
Confidence 4453 45 899999999999 999998866 5799999999 99999999999999999999999999998
Q ss_pred cccCC--CCC-------hhhhccCccCccCccceeEEecCC
Q psy10828 129 GHYDP--NIP-------ISVNIAIASPLLSRFDLVLVLLDS 160 (245)
Q Consensus 129 g~~~~--~~~-------~~~~i~l~~~LLsRFDLi~~l~D~ 160 (245)
|+|.. ..+ ..+.-+|++|||+||||.+.+...
T Consensus 162 G~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~ 202 (206)
T PF01078_consen 162 GYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRV 202 (206)
T ss_dssp -----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 87762 221 245669999999999999877543
No 12
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.54 E-value=6.4e-15 Score=144.27 Aligned_cols=96 Identities=22% Similarity=0.321 Sum_probs=80.5
Q ss_pred EEEecccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC--cccC
Q psy10828 57 LEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK--GHYD 132 (245)
Q Consensus 57 ~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~--g~~~ 132 (245)
|.. +||++.+||+|+ +||++.... ..+++|+++| |++.|+|.++|...++|++|.+|||+||+ |+|.
T Consensus 283 ~~~--~pG~l~~A~gGvLfLDEi~e~~~------~~~~~L~~~L-E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~ 353 (506)
T PRK09862 283 AIP--GPGEISLAHNGVLFLDELPEFER------RTLDALREPI-ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQ 353 (506)
T ss_pred cee--hhhHhhhccCCEEecCCchhCCH------HHHHHHHHHH-HcCcEEEecCCcceeccCCEEEEEeecCccceecC
Confidence 667 999999999999 777774322 4689999999 99999999999999999999999999997 8886
Q ss_pred CCC--Chhh-----hccCccCccCccceeEEecCCC
Q psy10828 133 PNI--PISV-----NIAIASPLLSRFDLVLVLLDSK 161 (245)
Q Consensus 133 ~~~--~~~~-----~i~l~~~LLsRFDLi~~l~D~~ 161 (245)
... +..+ .-.|++||||||||.+.+....
T Consensus 354 ~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~ 389 (506)
T PRK09862 354 GNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP 389 (506)
T ss_pred CCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCC
Confidence 532 2233 3489999999999999887553
No 13
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.52 E-value=3e-14 Score=139.34 Aligned_cols=154 Identities=17% Similarity=0.178 Sum_probs=105.1
Q ss_pred cceEEEEecccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC--
Q psy10828 53 GLIELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-- 128 (245)
Q Consensus 53 g~~e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-- 128 (245)
|.| +.. +||++.+||+|+ |||++.+.+ ..++.|+++| |++.|+|.++|...++++++.+|||+|||
T Consensus 281 ggg-~~~--~pG~i~lA~~GvLfLDEi~e~~~------~~~~~L~~~L-E~~~v~i~r~g~~~~~pa~frlIaa~Npcpc 350 (499)
T TIGR00368 281 GGG-PIP--LPGEISLAHNGVLFLDELPEFKR------SVLDALREPI-EDGSISISRASAKIFYPARFQLVAAMNPCPC 350 (499)
T ss_pred CCc-ccc--chhhhhccCCCeEecCChhhCCH------HHHHHHHHHH-HcCcEEEEecCcceeccCCeEEEEecCCccc
Confidence 434 556 899999999999 677764332 4789999999 99999999999999999999999999997
Q ss_pred cccCCCC----Ch-----hhhccCccCccCccceeEEecCCCChh--------hhhhhhhhhhccC-----CCCCCC-CC
Q psy10828 129 GHYDPNI----PI-----SVNIAIASPLLSRFDLVLVLLDSKSEQ--------WDKMVSNYILFGK-----RLGPSS-NQ 185 (245)
Q Consensus 129 g~~~~~~----~~-----~~~i~l~~~LLsRFDLi~~l~D~~~~~--------~D~~ia~hIl~~~-----~~~~~~-~~ 185 (245)
|+|+... +. .++.++++||||||||++.+.+....+ ....+.++|.+-+ +..... ..
T Consensus 351 g~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~ 430 (499)
T TIGR00368 351 GHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANIN 430 (499)
T ss_pred CcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 9997521 12 245589999999999999988654321 2223334443211 110000 00
Q ss_pred CCCCCCHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHH
Q psy10828 186 ATSLWDVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQ 224 (245)
Q Consensus 186 ~~~~l~~e~LrkYIayAR~~~P~LS~EA~~~I~~yY~~l 224 (245)
-...++...+++| | .|++++.+++.+.|..+
T Consensus 431 ~N~~l~~~~l~~~---~-----~l~~~~~~~l~~a~~~~ 461 (499)
T TIGR00368 431 KNADLNSDEIEQF---C-----KLSAIDANDLEGALNKL 461 (499)
T ss_pred ccccCCHHHHHhh---c-----CCCHHHHHHHHHHHHhc
Confidence 1234455555543 2 35778888888777653
No 14
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3e-14 Score=137.75 Aligned_cols=93 Identities=22% Similarity=0.307 Sum_probs=81.8
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC--cccCCCC--
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK--GHYDPNI-- 135 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~--g~~~~~~-- 135 (245)
+||+++|||+|| +||++.+++ ..+++|+|+| |++.|.|++++..+++||+++++|||||| |++....
T Consensus 275 ~PGeIsLAH~GVLFLDElpef~~------~iLe~LR~PL-E~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~ 347 (490)
T COG0606 275 RPGEISLAHNGVLFLDELPEFKR------SILEALREPL-ENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRR 347 (490)
T ss_pred CCCceeeecCCEEEeeccchhhH------HHHHHHhCcc-ccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCC
Confidence 899999999999 999999887 5799999999 99999999999999999999999999998 8776543
Q ss_pred --Ch-----hhhccCccCccCccceeEEecCCC
Q psy10828 136 --PI-----SVNIAIASPLLSRFDLVLVLLDSK 161 (245)
Q Consensus 136 --~~-----~~~i~l~~~LLsRFDLi~~l~D~~ 161 (245)
+. ...-+|++|||+||||.+-+.+..
T Consensus 348 C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~ 380 (490)
T COG0606 348 CPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLS 380 (490)
T ss_pred cCCCHHHHHHHHHHhhHHHHhhhhheecccCCC
Confidence 11 355599999999999998766543
No 15
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.30 E-value=5.5e-12 Score=126.39 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=116.4
Q ss_pred ceEEEEecccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-c
Q psy10828 54 LIELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-G 129 (245)
Q Consensus 54 ~~e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g 129 (245)
+|++.+ ++|.+..|++|+ |||++ + +. ..++.|+++| |.+.+.|.+.|...++++++.+||++||. |
T Consensus 112 ~g~~~~--~~G~L~~A~~GiL~lDEi~--~-----l~~~~q~~Ll~~l-e~g~~~v~r~g~~~~~~~~~~lIat~np~eg 181 (633)
T TIGR02442 112 EGEKAF--QPGLLAEAHRGILYIDEVN--L-----LDDHLVDVLLDAA-AMGVNRVEREGLSVSHPARFVLIGTMNPEEG 181 (633)
T ss_pred cCCeee--cCcceeecCCCeEEeChhh--h-----CCHHHHHHHHHHH-hcCCEEEEECCceeeecCCeEEEEecCCCCC
Confidence 456788 999999999999 66666 2 33 3689999999 99999999999999999999999999997 5
Q ss_pred ccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCC--CHHHHHHHHHHhhccC-
Q psy10828 130 HYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLW--DVEKLQAYFYLIKGLR- 206 (245)
Q Consensus 130 ~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l--~~e~LrkYIayAR~~~- 206 (245)
.++++|++||+|.+.+.+..+.+.+.++..+.+.....+.. ....| ....++++|..||.+.
T Consensus 182 ------------~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~ar~~~~ 246 (633)
T TIGR02442 182 ------------DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEA---FAARWAAEQEELRNRIARARSLLP 246 (633)
T ss_pred ------------CCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHH---HHHHhhhhHHHHHHHHHHHHHhCC
Confidence 37799999999999888877666666777666543322100 00112 3457889999999754
Q ss_pred -CCCCHHHHHHHHHHHHHHHhh
Q psy10828 207 -PQMTLEANRILTRYYQAQRKA 227 (245)
Q Consensus 207 -P~LS~EA~~~I~~yY~~lR~~ 227 (245)
..+++++.+.|..+|..++-.
T Consensus 247 ~V~is~~~~~~l~~~~~~~~i~ 268 (633)
T TIGR02442 247 SVRISDSLIRFISELCIEFGVD 268 (633)
T ss_pred CCCCCHHHHHHHHHHHHHhCCC
Confidence 478999999999999987643
No 16
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.21 E-value=2.8e-11 Score=120.64 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=118.5
Q ss_pred cceEEEEecccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCc
Q psy10828 53 GLIELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKG 129 (245)
Q Consensus 53 g~~e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g 129 (245)
.+|.|.+ ++|.+..||+|+ +||++ + +. ..+..|.++| |+++|+|.+.|...+++++|.|||++||..
T Consensus 69 ~~g~~~~--~~G~L~~A~~GvL~lDEi~--r-----l~~~~q~~Ll~al-~~g~v~i~r~G~~~~~p~~f~lIAt~np~e 138 (589)
T TIGR02031 69 AGGQRVT--QPGLLDEAPRGVLYVDMAN--L-----LDDGLSNRLLQAL-DEGVVIVEREGISVVHPAKFALIATYDPAE 138 (589)
T ss_pred hcCcccC--CCCCeeeCCCCcEeccchh--h-----CCHHHHHHHHHHH-HcCCeEEEECCCceeecCceEEEEecCCcc
Confidence 4567888 999999999999 66666 2 23 3689999999 999999999999999999999999999982
Q ss_pred ccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhhcc--CC
Q psy10828 130 HYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGL--RP 207 (245)
Q Consensus 130 ~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR~~--~P 207 (245)
....|++.|++||++++.+.+.++.+....|.++.+.... .....+...++++|..||.. +.
T Consensus 139 ---------~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~-------~~~~~~~~~~~~~i~~ar~~~~~V 202 (589)
T TIGR02031 139 ---------GGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEV-------FRMNDELELLRGQIEAARELLPQV 202 (589)
T ss_pred ---------ccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhh-------hhcchhhHHHHHHHHHHHHhcCCc
Confidence 1237899999999999999888877666677777653211 11123567899999999964 44
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy10828 208 QMTLEANRILTRYYQAQRKA 227 (245)
Q Consensus 208 ~LS~EA~~~I~~yY~~lR~~ 227 (245)
.+++++.+.|..++..++-.
T Consensus 203 ~i~~~~~~~l~~~~~~~gv~ 222 (589)
T TIGR02031 203 TISAEQVKELVLTAASLGIS 222 (589)
T ss_pred cCCHHHHHHHHHHHHHcCCC
Confidence 78999999999999876543
No 17
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.89 E-value=1.3e-09 Score=108.80 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=76.3
Q ss_pred EEEEecccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCC
Q psy10828 56 ELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDP 133 (245)
Q Consensus 56 e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~ 133 (245)
.-.+ +||.+-+||+|| +||+..++. ..+++|.|+| |.+.|+|.+.|...++|++|.+||+.||.
T Consensus 81 ~~~~--~pGlla~Ah~GvL~lDe~n~~~~------~~~~aLleam-e~G~vtIeR~G~s~~~Pa~F~LIat~~~~----- 146 (584)
T PRK13406 81 RPVA--QRGLLAEADGGVLVLAMAERLEP------GTAARLAAAL-DTGEVRLERDGLALRLPARFGLVALDEGA----- 146 (584)
T ss_pred CcCC--CCCceeeccCCEEEecCcccCCH------HHHHHHHHHH-hCCcEEEEECCcEEecCCCcEEEecCCCh-----
Confidence 3346 899999999999 899996543 4799999999 99999999999999999999999986665
Q ss_pred CCChhhhccCccCccCccceeEEecCCCCh
Q psy10828 134 NIPISVNIAIASPLLSRFDLVLVLLDSKSE 163 (245)
Q Consensus 134 ~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~ 163 (245)
.+...||++||+||||.+.+......
T Consensus 147 ----~~~~~L~~~lLDRf~l~v~v~~~~~~ 172 (584)
T PRK13406 147 ----EEDERAPAALADRLAFHLDLDGLALR 172 (584)
T ss_pred ----hcccCCCHHhHhheEEEEEcCCCChH
Confidence 22357999999999999988765543
No 18
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.88 E-value=6.5e-09 Score=97.51 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=108.2
Q ss_pred ceEEEEecccchhhcccCce--eccCCCCcCCCCCCCC-chHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-c
Q psy10828 54 LIELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAG-PVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-G 129 (245)
Q Consensus 54 ~~e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~-~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g 129 (245)
+|+|.+ ++|-+..|++|+ +||++ .+.. .+..|.++| +++.+++.+.|...++++|+.++|+.||. |
T Consensus 117 ~g~~~~--~~GlL~~A~~GvL~lDEi~-------~L~~~~Q~~Ll~~l-~~g~~~v~r~G~~~~~~~r~iviat~np~eg 186 (337)
T TIGR02030 117 EGVKAF--EPGLLARANRGILYIDEVN-------LLEDHLVDVLLDVA-ASGWNVVEREGISIRHPARFVLVGSGNPEEG 186 (337)
T ss_pred cCCEEe--ecCcceeccCCEEEecChH-------hCCHHHHHHHHHHH-HhCCeEEEECCEEEEcCCCEEEEeccccccC
Confidence 567888 999999999999 77777 2333 689999999 99999999999999999999999999998 4
Q ss_pred ccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCC--CHHHHHHHHHHhhc--c
Q psy10828 130 HYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLW--DVEKLQAYFYLIKG--L 205 (245)
Q Consensus 130 ~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l--~~e~LrkYIayAR~--~ 205 (245)
. +++.|++||.+.+.+....+.+....+.+........+.. ....+ ....+.+-|..||+ -
T Consensus 187 ~------------l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~---~~~~~~~e~~~~~~~I~~a~~~~~ 251 (337)
T TIGR02030 187 E------------LRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHA---FCEKWQTEQEALQAKIVNAQNLLP 251 (337)
T ss_pred C------------CCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchh---hhhhhhhhhhcCHHHHHHHHHHhc
Confidence 3 7899999999988877665433333333332211100000 00011 23467888999985 4
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q psy10828 206 RPQMTLEANRILTRYYQAQRK 226 (245)
Q Consensus 206 ~P~LS~EA~~~I~~yY~~lR~ 226 (245)
...+++++.+.|.+.....|.
T Consensus 252 ~V~v~d~~~~~i~~l~~~~~~ 272 (337)
T TIGR02030 252 QVTIPYDVLVKVAELCAELDV 272 (337)
T ss_pred cCcCCHHHHHHHHHHHHHHCC
Confidence 566999999999999988774
No 19
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.80 E-value=1.5e-08 Score=94.98 Aligned_cols=150 Identities=14% Similarity=0.100 Sum_probs=103.4
Q ss_pred ceEEEEecccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cc
Q psy10828 54 LIELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GH 130 (245)
Q Consensus 54 ~~e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~ 130 (245)
+|++.+ ++|.+..|++|+ +||++... ...+.+|.++| |.+.++|.+.|....+++++.++|++||. +.
T Consensus 114 ~g~~~~--~~G~l~~A~~GiL~lDEInrl~------~~~q~~Lle~m-ee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~ 184 (334)
T PRK13407 114 RGEKAF--EPGLLARANRGYLYIDEVNLLE------DHIVDLLLDVA-QSGENVVEREGLSIRHPARFVLVGSGNPEEGE 184 (334)
T ss_pred cCCeee--cCCceEEcCCCeEEecChHhCC------HHHHHHHHHHH-HcCCeEEEECCeEEecCCCEEEEecCCcccCC
Confidence 467888 999999999999 67777221 13689999999 99999999999999999999999999997 42
Q ss_pred cCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCC--CHHHHHHHHHHhhc--cC
Q psy10828 131 YDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLW--DVEKLQAYFYLIKG--LR 206 (245)
Q Consensus 131 ~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l--~~e~LrkYIayAR~--~~ 206 (245)
+++.|++||.+.+.+....+.+.-.++..........+.. ....| .......=|.-+|+ -+
T Consensus 185 ------------l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~a~~~~~~ 249 (334)
T PRK13407 185 ------------LRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDA---FMAKWGAEDMQLRGRILGARARLPQ 249 (334)
T ss_pred ------------CCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchh---hhccccccccCCHHHHHHHHHhcCC
Confidence 7899999999999886544433323333332211111100 00001 11233444555553 35
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q psy10828 207 PQMTLEANRILTRYYQAQRKA 227 (245)
Q Consensus 207 P~LS~EA~~~I~~yY~~lR~~ 227 (245)
..++++..+.|.+.-...|..
T Consensus 250 V~v~~~~~~yi~~l~~~~~~~ 270 (334)
T PRK13407 250 LKTPNTVLHDCAALCIALGSD 270 (334)
T ss_pred cccCHHHHHHHHHHHHHHCCC
Confidence 667899999998888887764
No 20
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.68 E-value=4.6e-08 Score=92.35 Aligned_cols=148 Identities=10% Similarity=0.101 Sum_probs=106.9
Q ss_pred ceEEEEecccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-c
Q psy10828 54 LIELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-G 129 (245)
Q Consensus 54 ~~e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g 129 (245)
.|.+.+ ++|-+..|++|+ +||++- +. ..+..|.++| +.+++++.+.|....+++|+.++|+.||. |
T Consensus 130 ~g~~~~--~~GlL~~A~~GiL~lDEInr-------L~~~~Q~~LLeam-~e~~~~ier~G~s~~~p~rfiviaT~np~eg 199 (350)
T CHL00081 130 EGVKAF--EPGLLAKANRGILYVDEVNL-------LDDHLVDILLDSA-ASGWNTVEREGISIRHPARFVLVGSGNPEEG 199 (350)
T ss_pred cCcccc--cCCeeeecCCCEEEecChHh-------CCHHHHHHHHHHH-HhCCeEEeeCCeeeecCCCEEEEeccCcccC
Confidence 556777 999999999999 677772 23 3689999999 99999999999999999999999999998 4
Q ss_pred ccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCC---CCCCCCCCCHHHHHHHHHHhhc--
Q psy10828 130 HYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPS---SNQATSLWDVEKLQAYFYLIKG-- 204 (245)
Q Consensus 130 ~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~---~~~~~~~l~~e~LrkYIayAR~-- 204 (245)
. +++.|++||.+++.+....+.+...+|.++.......+.. .+...... ...=|.-||.
T Consensus 200 ~------------l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~----~~~~I~~ar~~~ 263 (350)
T CHL00081 200 E------------LRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEE----LRSKIVAAQNLL 263 (350)
T ss_pred C------------CCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhcccccc----CHHHHHHHHHhc
Confidence 3 7799999999999998876656565555554321111100 00011112 3334444553
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhh
Q psy10828 205 LRPQMTLEANRILTRYYQAQRKA 227 (245)
Q Consensus 205 ~~P~LS~EA~~~I~~yY~~lR~~ 227 (245)
-+..++++..+.|.+.....|..
T Consensus 264 ~~V~v~~~~~~yi~~l~~~~~~~ 286 (350)
T CHL00081 264 PKVEIDYDLRVKISQICSELDVD 286 (350)
T ss_pred CCCccCHHHHHHHHHHHHHHCCC
Confidence 35668999999999988888754
No 21
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.64 E-value=6.7e-08 Score=96.95 Aligned_cols=141 Identities=20% Similarity=0.226 Sum_probs=98.4
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeecc-----ce---eeEeecceeeeeecCCCccc
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQA-----GL---VCKLNTRCSIIAACNPKGHY 131 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKa-----g~---~~~l~ar~sviAa~NP~g~~ 131 (245)
+||++..|+||+ ||+++.-. ...+..|+++| +++++++... |. ....|+++-+|+++||.
T Consensus 209 ~~G~L~~AngGtL~Ldei~~L~------~~~q~~Ll~~L-~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~--- 278 (608)
T TIGR00764 209 EAGAIHRAHKGVLYIDEIKTMP------LEVQQYLLTAL-QDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD--- 278 (608)
T ss_pred CCCceEECCCCEEEEEChHhCC------HHHHHHHHHHH-HhCcEEecCccccccccccCCCCCccceEEEEECCHH---
Confidence 899999999999 66666211 23689999999 9999998654 22 23468899999999986
Q ss_pred CCCCChhhhccCccCccCccc---eeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHH-hh-c-c
Q psy10828 132 DPNIPISVNIAIASPLLSRFD---LVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYL-IK-G-L 205 (245)
Q Consensus 132 ~~~~~~~~~i~l~~~LLsRFD---Li~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIay-AR-~-~ 205 (245)
+...+.++|++||+ +.+.+.+..+...+. .+.+-+||+. ++ + .
T Consensus 279 -------~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~------------------------~~~~~~~i~~~~~r~G~ 327 (608)
T TIGR00764 279 -------DLEGMHPALRSRIRGYGYEVYMKDTMPDTPEN------------------------RDKLVQFVAQEVKKDGR 327 (608)
T ss_pred -------HHhhcCHHHHHHhcCCeEEEEeeccCCCCHHH------------------------HHHHHHHHHHHHHHhCC
Confidence 22346799999999 766665543221111 1123334433 33 3 5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCcccchhhhhhhcC
Q psy10828 206 RPQMTLEANRILTRYYQAQRKADMRNAARTTVRLLESLIR 245 (245)
Q Consensus 206 ~P~LS~EA~~~I~~yY~~lR~~~~~~~~~iTvRqLESLIR 245 (245)
.|.|+++|.+.|.+||..+ ...++..+++.|+|++|+|
T Consensus 328 l~~~s~~Av~~Li~~~~R~--ag~r~~lsl~~R~L~~llR 365 (608)
T TIGR00764 328 IPHFTRDAVEEIVREAQRR--AGRKDHLTLRLRELGGLVR 365 (608)
T ss_pred CCcCCHHHHHHHHHHHHHH--HhcccccCCCHHHHHHHHH
Confidence 7889999999998887643 4444567889999999987
No 22
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.57 E-value=1.8e-07 Score=89.95 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=77.3
Q ss_pred eEEEEecccchhhcccCce--eccCCCCcCCCCCCCC-chHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cc
Q psy10828 55 IELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAG-PVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GH 130 (245)
Q Consensus 55 ~e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~-~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~ 130 (245)
|.-.+ +||-|--||+|| +||+.. +++ .+++|+.+| +.+.-.|-..|+..+.|+++.+||+|||- |.
T Consensus 131 g~~af--~PGlLa~AnRGIlYvDEvnl-------L~d~lvd~LLd~a-aeG~n~vereGisi~hpa~fvligTmNPEeGe 200 (423)
T COG1239 131 GPKAF--QPGLLARANRGILYVDEVNL-------LDDHLVDALLDVA-AEGVNDVEREGISIRHPARFLLIGTMNPEEGE 200 (423)
T ss_pred Ccccc--CCcchhhccCCEEEEecccc-------ccHHHHHHHHHHH-HhCCceeeeCceeeccCccEEEEeecCccccc
Confidence 55667 999999999999 898882 344 589999999 99988899999999999999999999998 65
Q ss_pred cCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhh
Q psy10828 131 YDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSN 171 (245)
Q Consensus 131 ~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~ 171 (245)
|-++||+||++.+-+--..+.+.--.|.+
T Consensus 201 ------------LrpqLlDRfg~~v~~~~~~~~~~rv~Ii~ 229 (423)
T COG1239 201 ------------LRPQLLDRFGLEVDTHYPLDLEERVEIIR 229 (423)
T ss_pred ------------cchhhHhhhcceeeccCCCCHHHHHHHHH
Confidence 44999999999987765554443333333
No 23
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.89 E-value=4.4e-05 Score=77.33 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=101.7
Q ss_pred CCCCcccccccCcc--c---ce-EEEEecccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeecc-
Q psy10828 39 AGPGAVSKARGPQF--G---LI-ELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQA- 109 (245)
Q Consensus 39 ~~~~~~a~~~~~~~--g---~~-e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKa- 109 (245)
.-..||.....+-+ | ++ --.+ +||++..|+||+ ||+.+... ...+..|.++| +++.+.+.-.
T Consensus 191 ~~~~LfG~i~~~~~~~Gg~~t~~~~~i--~~G~L~kAnGGtL~LDei~~L~------~~~q~~Llr~L-~~~~i~i~g~~ 261 (637)
T PRK13765 191 HAGALLGDVRHDPFQSGGLETPAHDRV--EAGAIHKAHKGVLFIDEINTLD------LESQQSLLTAM-QEKKFPITGQS 261 (637)
T ss_pred CHHHcCCccccccccccccccCccccC--CCCceeECCCcEEEEeChHhCC------HHHHHHHHHHH-HhCCEEecccc
Confidence 44567776654311 1 11 1234 899999999999 77776221 13689999999 9999988421
Q ss_pred ---c----eeeEeecceeeeeecCCCcccCCCCChhhhccCccCccCccc---eeEEecCCCChhhhhhhhhhhhccCCC
Q psy10828 110 ---G----LVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFD---LVLVLLDSKSEQWDKMVSNYILFGKRL 179 (245)
Q Consensus 110 ---g----~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFD---Li~~l~D~~~~~~D~~ia~hIl~~~~~ 179 (245)
+ .....|+++-||+++||. . ...+.+.|.+||. .-+.+.+.
T Consensus 262 e~~~~~~~~~~~ip~dvrvI~a~~~~--------l--l~~~dpdL~~rfk~~~v~v~f~~~------------------- 312 (637)
T PRK13765 262 ERSSGAMVRTEPVPCDFIMVAAGNLD--------A--LENMHPALRSRIKGYGYEVYMRDT------------------- 312 (637)
T ss_pred cccccccCCCcceeeeeEEEEecCcC--------H--HHhhhHHHHHHhccCeEEEEcccc-------------------
Confidence 1 134578888999999985 1 1112467777874 22222211
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhh-c-----cCCCCCHHHHHHHHHHHHHHHhhcCCCCcccchhhhhhhcC
Q psy10828 180 GPSSNQATSLWDVEKLQAYFYLIK-G-----LRPQMTLEANRILTRYYQAQRKADMRNAARTTVRLLESLIR 245 (245)
Q Consensus 180 ~~~~~~~~~~l~~e~LrkYIayAR-~-----~~P~LS~EA~~~I~~yY~~lR~~~~~~~~~iTvRqLESLIR 245 (245)
..-+.+..++|+.|.. . -.|.++++|...|.+||. |....++......|+|..|+|
T Consensus 313 --------~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~--R~ag~r~~lsl~~~~l~~l~r 374 (637)
T PRK13765 313 --------MEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAK--RRAGRKGHLTLKLRDLGGLVR 374 (637)
T ss_pred --------cCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHH--HHhCCccccccCHHHHHHHHH
Confidence 1235567777877654 2 257899999999999987 333434445666788887776
No 24
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.56 E-value=7.7e-05 Score=61.73 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=49.1
Q ss_pred eEEEEecccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccC
Q psy10828 55 IELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYD 132 (245)
Q Consensus 55 ~e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~ 132 (245)
++|.+ .+|-++ .+| +||+. | + ....+.+|.|+| +-+.|++. |....||-.+.|||+.||....
T Consensus 52 ~~f~~--~~GPif---~~ill~DEiN---r-a--ppktQsAlLeam-~Er~Vt~~--g~~~~lp~pf~ViATqNp~e~~- 116 (131)
T PF07726_consen 52 GEFEF--RPGPIF---TNILLADEIN---R-A--PPKTQSALLEAM-EERQVTID--GQTYPLPDPFFVIATQNPVEQE- 116 (131)
T ss_dssp TEEEE--EE-TT----SSEEEEETGG---G-S---HHHHHHHHHHH-HHSEEEET--TEEEE--SS-EEEEEE-TT--S-
T ss_pred CeeEe--ecChhh---hceeeecccc---c-C--CHHHHHHHHHHH-HcCeEEeC--CEEEECCCcEEEEEecCccccC-
Confidence 56777 788887 456 78887 2 1 123689999999 88888875 7888999999999999998211
Q ss_pred CCCChhhhccCccCccCcc
Q psy10828 133 PNIPISVNIAIASPLLSRF 151 (245)
Q Consensus 133 ~~~~~~~~i~l~~~LLsRF 151 (245)
-...||.++++||
T Consensus 117 ------Gty~Lpea~~DRF 129 (131)
T PF07726_consen 117 ------GTYPLPEAQLDRF 129 (131)
T ss_dssp ------------HHHHTTS
T ss_pred ------ceecCCHHHhccc
Confidence 1247899999999
No 25
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.84 E-value=0.014 Score=55.02 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=63.4
Q ss_pred ccchhhcc--cCce--eccCCCCcCCCCCCCCchHHHHHhhhcc-ceeEeeccceeeEeecceeeeeecCCCcccCCCCC
Q psy10828 62 AAGEIFQK--KKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWA-KEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIP 136 (245)
Q Consensus 62 ~aGa~vLa--~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~Eq-qtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~ 136 (245)
+.|-+..| ++++ +||++-- ..+.+.+||..+ |. +.++|..-+-..+-+-.+-|+|++||.|.-|..--
T Consensus 124 ~~GpL~~A~~~g~illlDEin~a------~p~~~~~L~~lL-E~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~ 196 (327)
T TIGR01650 124 RDGILPWALQHNVALCFDEYDAG------RPDVMFVIQRVL-EAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGL 196 (327)
T ss_pred ecCcchhHHhCCeEEEechhhcc------CHHHHHHHHHHh-ccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcc
Confidence 57777554 4554 7777721 124689999999 95 68888776665555557999999999854333221
Q ss_pred hhhhccCccCccCccceeEEecCCCChhhh
Q psy10828 137 ISVNIAIASPLLSRFDLVLVLLDSKSEQWD 166 (245)
Q Consensus 137 ~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D 166 (245)
-.-...++.++++||=+++.+ |-++.+..
T Consensus 197 y~Gt~~l~~A~lDRF~i~~~~-~Yp~~e~E 225 (327)
T TIGR01650 197 YHGTQQINQAQMDRWSIVTTL-NYLEHDNE 225 (327)
T ss_pred eeeeecCCHHHHhheeeEeeC-CCCCHHHH
Confidence 233447889999999765443 44444333
No 26
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.68 E-value=0.01 Score=53.36 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=61.1
Q ss_pred ccchhhc--ccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeecc---ceeeEeecceeeeeecCCCcccCC
Q psy10828 62 AAGEIFQ--KKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQA---GLVCKLNTRCSIIAACNPKGHYDP 133 (245)
Q Consensus 62 ~aGa~vL--a~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKa---g~~~~l~ar~sviAa~NP~g~~~~ 133 (245)
.+|.++. +.||+ +||++ + .. +.+..|+++| |.+.+++.-. +-....+..+-|||++||...-
T Consensus 95 ~~g~l~~A~~~g~~lllDEi~--r-----~~~~~q~~Ll~~L-e~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~-- 164 (262)
T TIGR02640 95 VDNRLTLAVREGFTLVYDEFT--R-----SKPETNNVLLSVF-EEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA-- 164 (262)
T ss_pred cCchHHHHHHcCCEEEEcchh--h-----CCHHHHHHHHHHh-cCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc--
Confidence 5788885 57777 66666 2 22 3689999999 9999988633 2344567788899999997210
Q ss_pred CCChhhhccCccCccCccceeEEecCCCChhhhhhh
Q psy10828 134 NIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMV 169 (245)
Q Consensus 134 ~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~i 169 (245)
+. ..++..|++|| ..+-.+-|+.+...+|
T Consensus 165 ---g~--~~l~~aL~~R~--~~i~i~~P~~~~e~~I 193 (262)
T TIGR02640 165 ---GV--HETQDALLDRL--ITIFMDYPDIDTETAI 193 (262)
T ss_pred ---ce--ecccHHHHhhc--EEEECCCCCHHHHHHH
Confidence 11 12478899997 4555566766555443
No 27
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.52 E-value=0.0021 Score=51.40 Aligned_cols=81 Identities=25% Similarity=0.393 Sum_probs=52.3
Q ss_pred ccceEEEEecccchhhcc--cCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeec------ceee
Q psy10828 52 FGLIELEIFSAAGEIFQK--KKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNT------RCSI 121 (245)
Q Consensus 52 ~g~~e~~i~~~aGa~vLa--~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~a------r~sv 121 (245)
.|..+|. +|.++.| ++++ +||+. +. ....+.+|+.++ |.+.+.+...+-....+. .+.|
T Consensus 49 ~~~~~~~----~~~l~~a~~~~~il~lDEin--~a----~~~v~~~L~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~i 117 (139)
T PF07728_consen 49 NGQFEFK----DGPLVRAMRKGGILVLDEIN--RA----PPEVLESLLSLL-EERRIQLPEGGEEIKEPNNDLASPNFRI 117 (139)
T ss_dssp TTTTCEE----E-CCCTTHHEEEEEEESSCG--G------HHHHHTTHHHH-SSSEEEE-TSSSEEE--TT------EEE
T ss_pred ccccccc----cccccccccceeEEEECCcc--cC----CHHHHHHHHHHH-hhCcccccCCCcEEecCcccccccceEE
Confidence 4445564 6777744 5666 66666 21 123689999999 999999876666555554 4999
Q ss_pred eeecCCCcccCCCCChhhhccCccCccCcc
Q psy10828 122 IAACNPKGHYDPNIPISVNIAIASPLLSRF 151 (245)
Q Consensus 122 iAa~NP~g~~~~~~~~~~~i~l~~~LLsRF 151 (245)
||++||.+ ...-.++++|+|||
T Consensus 118 i~t~N~~~--------~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 118 IATMNPRD--------KGRKELSPALLDRF 139 (139)
T ss_dssp EEEESSST----------TTTTCHHHHTT-
T ss_pred EEEEcCCC--------CCcCcCCHHHHhhC
Confidence 99999984 12336889999998
No 28
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.29 E-value=0.038 Score=51.12 Aligned_cols=88 Identities=20% Similarity=0.326 Sum_probs=61.4
Q ss_pred EEEEecccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCC
Q psy10828 56 ELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDP 133 (245)
Q Consensus 56 e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~ 133 (245)
+..+ .+|-++-+.+++ +||+. +- ....+.+|+|+| +-..+++.--+- ..++-.+-|+|+.||..+
T Consensus 100 ~~~~--~~gpl~~~~~~ill~DEIn--ra----~p~~q~aLl~~l-~e~~vtv~~~~~-~~~~~~f~viaT~Np~e~--- 166 (329)
T COG0714 100 EFRF--VPGPLFAAVRVILLLDEIN--RA----PPEVQNALLEAL-EERQVTVPGLTT-IRLPPPFIVIATQNPGEY--- 166 (329)
T ss_pred eEEE--ecCCcccccceEEEEeccc--cC----CHHHHHHHHHHH-hCcEEEECCcCC-cCCCCCCEEEEccCcccc---
Confidence 4444 688888888877 67766 21 124689999999 777777763332 778999999999998711
Q ss_pred CCChhhhccCccCccCccceeEEecCCC
Q psy10828 134 NIPISVNIAIASPLLSRFDLVLVLLDSK 161 (245)
Q Consensus 134 ~~~~~~~i~l~~~LLsRFDLi~~l~D~~ 161 (245)
.....+|.++++||-+.+.+ +-+
T Consensus 167 ----~g~~~l~eA~ldRf~~~~~v-~yp 189 (329)
T COG0714 167 ----EGTYPLPEALLDRFLLRIYV-DYP 189 (329)
T ss_pred ----CCCcCCCHHHHhhEEEEEec-CCC
Confidence 11235789999999754444 444
No 29
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.98 E-value=0.083 Score=52.52 Aligned_cols=152 Identities=15% Similarity=0.134 Sum_probs=92.3
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChh
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPIS 138 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~ 138 (245)
.+|-+--|+ + +||+. +. ....+.+|.++| +.+.+++ .|-...+|.|+-++|+ ||. .
T Consensus 101 ~~G~L~~A~--lLfLDEI~--ra----sp~~QsaLLeam-~Er~~t~--g~~~~~lp~rfiv~AT-N~LPE--------- 159 (498)
T PRK13531 101 TSGYLPEAE--IVFLDEIW--KA----GPAILNTLLTAI-NERRFRN--GAHEEKIPMRLLVTAS-NELPE--------- 159 (498)
T ss_pred cCCcccccc--EEeecccc--cC----CHHHHHHHHHHH-HhCeEec--CCeEEeCCCcEEEEEC-CCCcc---------
Confidence 345443444 4 67776 22 124799999999 8899887 7888899999988887 876 2
Q ss_pred hhccCccCccCccceeEEecCCCChhhh-hhhhhhhhccCCC-CCCCCCCCCCCCHHHHHHHHHHhhccCCCCCHHHHHH
Q psy10828 139 VNIAIASPLLSRFDLVLVLLDSKSEQWD-KMVSNYILFGKRL-GPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEANRI 216 (245)
Q Consensus 139 ~~i~l~~~LLsRFDLi~~l~D~~~~~~D-~~ia~hIl~~~~~-~~~~~~~~~~l~~e~LrkYIayAR~~~P~LS~EA~~~ 216 (245)
.-.+-..|++|| ++-+..+.++.... .. +|..+.. ..........++.+.+...-..++++ .++++..+.
T Consensus 160 -~g~~leAL~DRF-liri~vp~l~~~~~e~~----lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V--~v~d~v~ey 231 (498)
T PRK13531 160 -ADSSLEALYDRM-LIRLWLDKVQDKANFRS----MLTSQQDENDNPVPASLQITDEEYQQWQKEIGKI--TLPDHVFEL 231 (498)
T ss_pred -cCCchHHhHhhE-EEEEECCCCCchHHHHH----HHHcccccccCCCcccCCCCHHHHHHHHHHhcce--eCCHHHHHH
Confidence 112226899999 76666666653222 22 2322111 00001123468888887777777654 567777777
Q ss_pred HHHHHHHHHhhcCCCCcccchhhhhhhc
Q psy10828 217 LTRYYQAQRKADMRNAARTTVRLLESLI 244 (245)
Q Consensus 217 I~~yY~~lR~~~~~~~~~iTvRqLESLI 244 (245)
|.+.-..+|+.. +...+++|---.++
T Consensus 232 I~~L~~~lr~~r--~~~~~SpR~~~~l~ 257 (498)
T PRK13531 232 IFQLRQQLDALP--NAPYVSDRRWKKAI 257 (498)
T ss_pred HHHHHHHHhcCC--CCCCcCcHHHHHHH
Confidence 776666555432 12346776555443
No 30
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.98 E-value=0.033 Score=55.36 Aligned_cols=144 Identities=13% Similarity=0.034 Sum_probs=84.0
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccc---------------eeeEeecceeeee
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAG---------------LVCKLNTRCSIIA 123 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag---------------~~~~l~ar~sviA 123 (245)
++|++-.|++|+ |||.+ .+. ..+..|..+| |.+.+.+-.+. ....+++.|-+|+
T Consensus 167 ~~G~l~~a~gG~L~IdEI~-------~L~~~~q~~LL~~L-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ 238 (531)
T TIGR02902 167 KPGAVTRAHGGVLFIDEIG-------ELHPVQMNKLLKVL-EDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIG 238 (531)
T ss_pred cCchhhccCCcEEEEechh-------hCCHHHHHHHHHHH-HhCeeeeccccccccCcccccchhhhcccCcccceEEEE
Confidence 578888999999 77777 233 3688999999 99888764221 1234688888998
Q ss_pred ecCCC-cccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHh
Q psy10828 124 ACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLI 202 (245)
Q Consensus 124 a~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayA 202 (245)
|++.. . .++++|.||+.-|++ .....+.=..++++.++... -.++.+-++....|+
T Consensus 239 ATt~~p~------------~L~paLrsR~~~I~f--~pL~~eei~~Il~~~a~k~~---------i~is~~al~~I~~y~ 295 (531)
T TIGR02902 239 ATTRNPE------------EIPPALRSRCVEIFF--RPLLDEEIKEIAKNAAEKIG---------INLEKHALELIVKYA 295 (531)
T ss_pred EecCCcc------------cCChHHhhhhheeeC--CCCCHHHHHHHHHHHHHHcC---------CCcCHHHHHHHHHhh
Confidence 87643 2 367999999865443 23333333455555554321 234555555444555
Q ss_pred hccCCCCCHHHHHHHHHHHHHHHhhcCCCCcccchhhhhhhc
Q psy10828 203 KGLRPQMTLEANRILTRYYQAQRKADMRNAARTTVRLLESLI 244 (245)
Q Consensus 203 R~~~P~LS~EA~~~I~~yY~~lR~~~~~~~~~iTvRqLESLI 244 (245)
++. .++.+++.......... +...||..++|-.+
T Consensus 296 ~n~-----Rel~nll~~Aa~~A~~~---~~~~It~~dI~~vl 329 (531)
T TIGR02902 296 SNG-----REAVNIVQLAAGIALGE---GRKRILAEDIEWVA 329 (531)
T ss_pred hhH-----HHHHHHHHHHHHHHhhC---CCcEEcHHHHHHHh
Confidence 432 35555555443221111 11346666665443
No 31
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.64 E-value=0.073 Score=48.10 Aligned_cols=100 Identities=22% Similarity=0.296 Sum_probs=60.5
Q ss_pred ccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEe-eccc---eeeEee-cceeeeeecCCCcccCCCCChhhh
Q psy10828 69 KKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISF-PQAG---LVCKLN-TRCSIIAACNPKGHYDPNIPISVN 140 (245)
Q Consensus 69 a~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsi-aKag---~~~~l~-ar~sviAa~NP~g~~~~~~~~~~~ 140 (245)
..+-| |||+.- ++ ..++.|+.+| |..+|.| ..+| -..+++ .++++|+|++-.|
T Consensus 100 ~~~~ILFIDEIHR-------lnk~~qe~Llpam-Ed~~idiiiG~g~~ar~~~~~l~~FTligATTr~g----------- 160 (233)
T PF05496_consen 100 KEGDILFIDEIHR-------LNKAQQEILLPAM-EDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG----------- 160 (233)
T ss_dssp -TT-EEEECTCCC---------HHHHHHHHHHH-HCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC-----------
T ss_pred CCCcEEEEechhh-------ccHHHHHHHHHHh-ccCeEEEEeccccccceeeccCCCceEeeeecccc-----------
Confidence 44555 777772 33 3789999999 9999976 3444 223333 4688898876543
Q ss_pred ccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhh-ccCCCCCHHHHHHHH
Q psy10828 141 IAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIK-GLRPQMTLEANRILT 218 (245)
Q Consensus 141 i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR-~~~P~LS~EA~~~I~ 218 (245)
.|++||.+||.+++-+ +.++.+.|.+-|..+- .++-.+++++...|.
T Consensus 161 -~ls~pLrdRFgi~~~l------------------------------~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia 208 (233)
T PF05496_consen 161 -LLSSPLRDRFGIVLRL------------------------------EFYSEEELAKIVKRSARILNIEIDEDAAEEIA 208 (233)
T ss_dssp -CTSHCCCTTSSEEEE----------------------------------THHHHHHHHHHCCHCTT-EE-HHHHHHHH
T ss_pred -ccchhHHhhcceecch------------------------------hcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 4679999999988754 2445556666665443 467777777766554
No 32
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.09 E-value=0.056 Score=51.72 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=73.4
Q ss_pred cchhhcccCce--eccCCCCcCCCCCCCC-chHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC--cccCCCCCh
Q psy10828 63 AGEIFQKKKAI--ISSVSPQKRGAPKSAG-PVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK--GHYDPNIPI 137 (245)
Q Consensus 63 aGa~vLa~~Gv--ide~~~~k~~~~k~~~-~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~--g~~~~~~~~ 137 (245)
.|++.-|++|+ ++|+. | .+. -+..|+.++ +.+.+.+.+. ...++....|||++||. ..|..+
T Consensus 229 ~G~l~~aNrGi~~f~Ei~--K-----~~~~~l~~LL~~~-qE~~v~~~~~--~~~~~~d~liia~sNe~e~~~~~~~--- 295 (361)
T smart00763 229 DGALNRANRGILEFVEMF--K-----ADIKFLHPLLTAT-QEGNIKGTGG--FAMIPIDGLIIAHSNESEWQRFKSN--- 295 (361)
T ss_pred cCccccccCceEEEeehh--c-----CCHHHHHHHhhhh-hcceEecCCc--ccccccceEEEEeCCHHHHhhhhcc---
Confidence 79999999999 55555 3 333 578889999 8888887643 33567778999999998 334322
Q ss_pred hhhccCccCccCccceeEE--ecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhh
Q psy10828 138 SVNIAIASPLLSRFDLVLV--LLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIK 203 (245)
Q Consensus 138 ~~~i~l~~~LLsRFDLi~~--l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR 203 (245)
....+|++|+..|-+ +++ -....+|-+..+..+.... ....+...+.+-.|.-.+|
T Consensus 296 ----k~~eaf~dR~~~i~vpY~l~---~~~E~~Iy~k~~~~s~~~~---~~~aP~~le~aa~~avltR 353 (361)
T smart00763 296 ----KKNEALLDRIIKVKVPYCLR---VSEEAQIYEKLLRNSDLTE---AHIAPHTLEMAALFSVLTR 353 (361)
T ss_pred ----ccchhhhhceEEEeCCCcCC---HHHHHHHHHHHhccCcCcc---cccCchHHHHHHHHHHHhh
Confidence 235999999997665 332 2233445555555332111 1223344455555555554
No 33
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.17 Score=51.79 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=66.8
Q ss_pred ccceeeEEEeCCccCCCCCCCCCCCcccccccCcccce-----EEEEecccchhhcccCce--eccCCCCcCCCCCCC-C
Q psy10828 18 ERNTSKTVTLGGTRTGPDEPPAGPGAVSKARGPQFGLI-----ELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSA-G 89 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~-----e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~ 89 (245)
+.|.......+|+..-.++.|.-..||..++.+-+|.+ --.+ +||++--||||| ||+... ++ .
T Consensus 170 ~~~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i--~pGaVHkAngGVLiIdei~l-------L~~~ 240 (647)
T COG1067 170 PKNFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRV--KPGAVHKANGGVLIIDEIGL-------LAQP 240 (647)
T ss_pred hhhhhhhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCCcccc--cCcccccccCcEEEEEhhhh-------hCcH
Confidence 34444445667776666666688899999999888732 4566 999999999999 777762 22 2
Q ss_pred chHHHHHhhhccceeEe-e---cccee---eEeecceeeeeecCCC
Q psy10828 90 PVAVCHSALWWAKEISF-P---QAGLV---CKLNTRCSIIAACNPK 128 (245)
Q Consensus 90 ~~~~l~EaM~EqqtIsi-a---Kag~~---~~l~ar~sviAa~NP~ 128 (245)
.+..+.-+|.+.++... + ..|.. -..|+.+-++++.|+.
T Consensus 241 ~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~ 286 (647)
T COG1067 241 LQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNRE 286 (647)
T ss_pred HHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHH
Confidence 56666777723333322 1 22322 2366777788888876
No 34
>PHA02244 ATPase-like protein
Probab=92.94 E-value=0.12 Score=49.80 Aligned_cols=80 Identities=21% Similarity=0.232 Sum_probs=54.6
Q ss_pred cchhh--cccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCc-ccCCCCCh
Q psy10828 63 AGEIF--QKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKG-HYDPNIPI 137 (245)
Q Consensus 63 aGa~v--La~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g-~~~~~~~~ 137 (245)
.|.++ ++.||+ |||++... .+.+..|+.++ +++.+.+ .|-....+-+|.+||++||.+ -|+...
T Consensus 171 dgpLl~A~~~GgvLiLDEId~a~------p~vq~~L~~lL-d~r~l~l--~g~~i~~h~~FRlIATsN~~~~G~~~~y-- 239 (383)
T PHA02244 171 ETPFYEAFKKGGLFFIDEIDASI------PEALIIINSAI-ANKFFDF--ADERVTAHEDFRVISAGNTLGKGADHIY-- 239 (383)
T ss_pred chHHHHHhhcCCEEEEeCcCcCC------HHHHHHHHHHh-ccCeEEe--cCcEEecCCCEEEEEeeCCCccCccccc--
Confidence 44443 467888 78777322 24688999999 9886654 455666788999999999982 233211
Q ss_pred hhhccCccCccCccce
Q psy10828 138 SVNIAIASPLLSRFDL 153 (245)
Q Consensus 138 ~~~i~l~~~LLsRFDL 153 (245)
.-.-.++.++++||-.
T Consensus 240 ~G~k~L~~AllDRFv~ 255 (383)
T PHA02244 240 VARNKIDGATLDRFAP 255 (383)
T ss_pred CCCcccCHHHHhhcEE
Confidence 1234788999999953
No 35
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.72 E-value=0.36 Score=44.11 Aligned_cols=126 Identities=11% Similarity=0.090 Sum_probs=67.9
Q ss_pred hhcccCce--eccCCCCc-C-CC-CCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhh
Q psy10828 66 IFQKKKAI--ISSVSPQK-R-GA-PKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVN 140 (245)
Q Consensus 66 ~vLa~~Gv--ide~~~~k-~-~~-~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~ 140 (245)
+--|.+|+ |||.+... . .- +-....+..|.+.| |.+. .++.||+|+++. .....
T Consensus 117 ~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~l-e~~~-------------~~~~vI~a~~~~-------~~~~~ 175 (284)
T TIGR02880 117 LKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM-ENQR-------------DDLVVILAGYKD-------RMDSF 175 (284)
T ss_pred HHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHH-hcCC-------------CCEEEEEeCCcH-------HHHHH
Confidence 34467898 67766221 0 00 00011357788899 8653 466788888765 01122
Q ss_pred ccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHH---HHHHHHHHhhccCCCCC--HHHHH
Q psy10828 141 IAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVE---KLQAYFYLIKGLRPQMT--LEANR 215 (245)
Q Consensus 141 i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e---~LrkYIayAR~~~P~LS--~EA~~ 215 (245)
..+.+.|.+||+..+.+-+ .+.+.-..|..+.++.... .++.+ .+..|+...++ .|-.. .++.+
T Consensus 176 ~~~np~L~sR~~~~i~fp~-l~~edl~~I~~~~l~~~~~---------~l~~~a~~~L~~~l~~~~~-~~~~GN~R~lrn 244 (284)
T TIGR02880 176 FESNPGFSSRVAHHVDFPD-YSEAELLVIAGLMLKEQQY---------RFSAEAEEAFADYIALRRT-QPHFANARSIRN 244 (284)
T ss_pred HhhCHHHHhhCCcEEEeCC-cCHHHHHHHHHHHHHHhcc---------ccCHHHHHHHHHHHHHhCC-CCCCChHHHHHH
Confidence 3456899999998776644 3344455566776664321 22333 34444444432 23322 45666
Q ss_pred HHHHHHHH
Q psy10828 216 ILTRYYQA 223 (245)
Q Consensus 216 ~I~~yY~~ 223 (245)
++......
T Consensus 245 ~ve~~~~~ 252 (284)
T TIGR02880 245 AIDRARLR 252 (284)
T ss_pred HHHHHHHH
Confidence 66666544
No 36
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=92.66 E-value=0.1 Score=48.86 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=51.6
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCCh
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPI 137 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~ 137 (245)
.+|-+-.|++|. ||+++ .+. ..+..|..++ +.+++ .+.|-....+..+-|||++|.. ...
T Consensus 85 ~~G~~~~a~gGtL~Ldei~-------~L~~~~Q~~Ll~~l-~~~~~--~~~g~~~~~~~~~RiI~at~~~l~~~------ 148 (329)
T TIGR02974 85 HQGRFERADGGTLFLDELA-------TASLLVQEKLLRVI-EYGEF--ERVGGSQTLQVDVRLVCATNADLPAL------ 148 (329)
T ss_pred cCCchhhCCCCEEEeCChH-------hCCHHHHHHHHHHH-HcCcE--EecCCCceeccceEEEEechhhHHHH------
Confidence 567789999998 67776 233 3688899999 87765 3455556678888999999865 211
Q ss_pred hhhccCccCccCccce
Q psy10828 138 SVNIAIASPLLSRFDL 153 (245)
Q Consensus 138 ~~~i~l~~~LLsRFDL 153 (245)
.....+...|+.||..
T Consensus 149 ~~~g~fr~dL~~rl~~ 164 (329)
T TIGR02974 149 AAEGRFRADLLDRLAF 164 (329)
T ss_pred hhcCchHHHHHHHhcc
Confidence 1223344667777753
No 37
>CHL00181 cbbX CbbX; Provisional
Probab=92.24 E-value=0.39 Score=44.14 Aligned_cols=127 Identities=13% Similarity=0.045 Sum_probs=70.1
Q ss_pred hhcccCce--eccCCCC-c-CCC-CCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhh
Q psy10828 66 IFQKKKAI--ISSVSPQ-K-RGA-PKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVN 140 (245)
Q Consensus 66 ~vLa~~Gv--ide~~~~-k-~~~-~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~ 140 (245)
+-.|.+|| |||.+.. + .+. +-....+..|...| |.+. -++.||+|.++. .....
T Consensus 118 l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~m-e~~~-------------~~~~vI~ag~~~-------~~~~~ 176 (287)
T CHL00181 118 LKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVM-ENQR-------------DDLVVIFAGYKD-------RMDKF 176 (287)
T ss_pred HHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHH-hcCC-------------CCEEEEEeCCcH-------HHHHH
Confidence 33478999 6776621 1 100 00112467788889 8643 356788877664 11222
Q ss_pred ccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhh--ccCCCCC--HHHHHH
Q psy10828 141 IAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIK--GLRPQMT--LEANRI 216 (245)
Q Consensus 141 i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR--~~~P~LS--~EA~~~ 216 (245)
..+.++|.|||+.++.+.+- +.+.-..|..+.++.... .++.+.......|+. .-.|.+. .++..+
T Consensus 177 ~~~np~L~sR~~~~i~F~~~-t~~el~~I~~~~l~~~~~---------~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ 246 (287)
T CHL00181 177 YESNPGLSSRIANHVDFPDY-TPEELLQIAKIMLEEQQY---------QLTPEAEKALLDYIKKRMEQPLFANARSVRNA 246 (287)
T ss_pred HhcCHHHHHhCCceEEcCCc-CHHHHHHHHHHHHHHhcC---------CCChhHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34558999999998877655 344445666666654321 233333444444443 2345555 456666
Q ss_pred HHHHHHH
Q psy10828 217 LTRYYQA 223 (245)
Q Consensus 217 I~~yY~~ 223 (245)
+.+.-..
T Consensus 247 ve~~~~~ 253 (287)
T CHL00181 247 LDRARMR 253 (287)
T ss_pred HHHHHHH
Confidence 6655443
No 38
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=91.80 E-value=0.21 Score=46.55 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=51.2
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCCh
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPI 137 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~ 137 (245)
.+|.+-.|++|. |++++ .+. ..+..|.+++ +.+.+. +.|-....++.+-||+++|.. .. .
T Consensus 92 ~~g~l~~a~gGtL~l~~i~-------~L~~~~Q~~L~~~l-~~~~~~--~~g~~~~~~~~~RiI~~s~~~l~~------l 155 (326)
T PRK11608 92 HPGRFERADGGTLFLDELA-------TAPMLVQEKLLRVI-EYGELE--RVGGSQPLQVNVRLVCATNADLPA------M 155 (326)
T ss_pred cCCchhccCCCeEEeCChh-------hCCHHHHHHHHHHH-hcCcEE--eCCCCceeeccEEEEEeCchhHHH------H
Confidence 477788999998 66666 223 3678899999 877644 445455777889999999865 21 1
Q ss_pred hhhccCccCccCccce
Q psy10828 138 SVNIAIASPLLSRFDL 153 (245)
Q Consensus 138 ~~~i~l~~~LLsRFDL 153 (245)
...-.+...|+.||..
T Consensus 156 ~~~g~f~~dL~~~l~~ 171 (326)
T PRK11608 156 VAEGKFRADLLDRLAF 171 (326)
T ss_pred HHcCCchHHHHHhcCC
Confidence 2333455667777754
No 39
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=91.02 E-value=0.3 Score=46.49 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=43.0
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
.+|.+-.|++|+ ||+++ .+. ..+..|.+++ +.+.+. +.|-....++.+-||+++|..
T Consensus 229 ~~g~~~~a~~gtl~ld~i~-------~l~~~~q~~L~~~l-~~~~~~--~~~~~~~~~~~~rii~~t~~~ 288 (457)
T PRK11361 229 RQGLFERANEGTLLLDEIG-------EMPLVLQAKLLRIL-QEREFE--RIGGHQTIKVDIRIIAATNRD 288 (457)
T ss_pred CCCceEECCCCEEEEechh-------hCCHHHHHHHHHHH-hcCcEE--eCCCCceeeeceEEEEeCCCC
Confidence 578888999999 77776 233 3688899999 777654 556666778888899999865
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=90.97 E-value=2.3 Score=37.92 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=40.8
Q ss_pred hhcccCce--eccCCCCcCCC-CCC-CCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhhc
Q psy10828 66 IFQKKKAI--ISSVSPQKRGA-PKS-AGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNI 141 (245)
Q Consensus 66 ~vLa~~Gv--ide~~~~k~~~-~k~-~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i 141 (245)
+--|.+|| |||.+...++- +.. ...++.|...| |... ..+.++.+.+|.. .....
T Consensus 101 ~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~-e~~~-------------~~~~vila~~~~~-------~~~~~ 159 (261)
T TIGR02881 101 IKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGM-EDNR-------------NEFVLILAGYSDE-------MDYFL 159 (261)
T ss_pred HHhccCCEEEEechhhhccCCccchHHHHHHHHHHHH-hccC-------------CCEEEEecCCcch-------hHHHH
Confidence 33467898 77776321110 000 12457788888 7632 3456666666541 11223
Q ss_pred cCccCccCccceeEEec
Q psy10828 142 AIASPLLSRFDLVLVLL 158 (245)
Q Consensus 142 ~l~~~LLsRFDLi~~l~ 158 (245)
.++++|.|||+..+.+-
T Consensus 160 ~~~p~L~sRf~~~i~f~ 176 (261)
T TIGR02881 160 SLNPGLRSRFPISIDFP 176 (261)
T ss_pred hcChHHHhccceEEEEC
Confidence 56789999998876653
No 41
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.92 E-value=0.9 Score=41.94 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=44.7
Q ss_pred ccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEe--eccc----eeeEeecceeeeeecCCCcccCCCCChhhh
Q psy10828 69 KKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISF--PQAG----LVCKLNTRCSIIAACNPKGHYDPNIPISVN 140 (245)
Q Consensus 69 a~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsi--aKag----~~~~l~ar~sviAa~NP~g~~~~~~~~~~~ 140 (245)
.++++ |||.+... ....+.+..+| |...+.+ .++. +...+| .+++++|+|+.+
T Consensus 101 ~~~~vl~IDEi~~l~------~~~~e~l~~~~-e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~----------- 161 (328)
T PRK00080 101 EEGDVLFIDEIHRLS------PVVEEILYPAM-EDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAG----------- 161 (328)
T ss_pred ccCCEEEEecHhhcc------hHHHHHHHHHH-HhcceeeeeccCccccceeecCC-CceEEeecCCcc-----------
Confidence 46677 66666221 12456788899 8776543 2322 122234 478888888653
Q ss_pred ccCccCccCccceeEEecCCCCh
Q psy10828 141 IAIASPLLSRFDLVLVLLDSKSE 163 (245)
Q Consensus 141 i~l~~~LLsRFDLi~~l~D~~~~ 163 (245)
.++++|.|||++++.+. ..+.
T Consensus 162 -~l~~~L~sRf~~~~~l~-~~~~ 182 (328)
T PRK00080 162 -LLTSPLRDRFGIVQRLE-FYTV 182 (328)
T ss_pred -cCCHHHHHhcCeeeecC-CCCH
Confidence 24578999998776554 3443
No 42
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=90.36 E-value=1.3 Score=45.00 Aligned_cols=147 Identities=13% Similarity=0.026 Sum_probs=82.6
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCCC-chHHHHHhhhccceeEeeccce---------------eeEeecceeeee
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSAG-PVAVCHSALWWAKEISFPQAGL---------------VCKLNTRCSIIA 123 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~~-~~~~l~EaM~EqqtIsiaKag~---------------~~~l~ar~sviA 123 (245)
..|-+-.+++|+ |||.+ .++. .+..|..+| |++++.+...-. ...-++.+.+++
T Consensus 257 ~~g~v~~asgGvL~LDEi~-------~Ld~~~Q~~Ll~~L-e~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~ 328 (615)
T TIGR02903 257 KTGLVTDAHGGVLFIDEIG-------ELDPLLQNKLLKVL-EDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIG 328 (615)
T ss_pred hcCchhhcCCCeEEEeccc-------cCCHHHHHHHHHHH-hhCeEEeecceeccCCcccchhhhhhcccCccceEEEEE
Confidence 456667788999 78866 2333 588999999 999987753311 111345666666
Q ss_pred ecCCC-cccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHh
Q psy10828 124 ACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLI 202 (245)
Q Consensus 124 a~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayA 202 (245)
+++.. . .++++|.|||..+.+ ...+.+.-..+..+.+.... ..++.+.++.-..|+
T Consensus 329 aTt~~~~------------~l~~aLrSR~~~i~~--~pls~edi~~Il~~~a~~~~---------v~ls~eal~~L~~ys 385 (615)
T TIGR02903 329 ATTRDPE------------EINPALRSRCAEVFF--EPLTPEDIALIVLNAAEKIN---------VHLAAGVEELIARYT 385 (615)
T ss_pred ecccccc------------ccCHHHHhceeEEEe--CCCCHHHHHHHHHHHHHHcC---------CCCCHHHHHHHHHCC
Confidence 65432 1 345889999986543 33444444455555554221 135655554444454
Q ss_pred hccCCCCCHHHHHHHHHHHHHHH--hh---cCCCCcccchhhhhhhc
Q psy10828 203 KGLRPQMTLEANRILTRYYQAQR--KA---DMRNAARTTVRLLESLI 244 (245)
Q Consensus 203 R~~~P~LS~EA~~~I~~yY~~lR--~~---~~~~~~~iTvRqLESLI 244 (245)
. |- ..+.+.|...|...+ .. .......||...|+-.+
T Consensus 386 ~---~g--Rraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l 427 (615)
T TIGR02903 386 I---EG--RKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVI 427 (615)
T ss_pred C---cH--HHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHh
Confidence 3 21 355566666655432 11 11123467777766543
No 43
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=89.88 E-value=0.45 Score=49.75 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=48.8
Q ss_pred eccCCCCcCCCCCCC-CchHHHHHhhhc-cceeEeec--cceeeEeecceeeeeecCCCcccCCCCChhhhccCccCccC
Q psy10828 74 ISSVSPQKRGAPKSA-GPVAVCHSALWW-AKEISFPQ--AGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLS 149 (245)
Q Consensus 74 ide~~~~k~~~~k~~-~~~~~l~EaM~E-qqtIsiaK--ag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LLs 149 (245)
+||++.... ... +..++|+|+| + .|..++.- -.+...+ .++.+||++|+. .||++||+
T Consensus 422 lDEidk~~~---~~~g~~~~aLlevl-d~~~~~~~~d~~~~~~~dl-s~v~~i~TaN~~-------------~i~~aLl~ 483 (784)
T PRK10787 422 LDEIDKMSS---DMRGDPASALLEVL-DPEQNVAFSDHYLEVDYDL-SDVMFVATSNSM-------------NIPAPLLD 483 (784)
T ss_pred EEChhhccc---ccCCCHHHHHHHHh-ccccEEEEecccccccccC-CceEEEEcCCCC-------------CCCHHHhc
Confidence 777772211 111 2369999999 7 46665542 1122222 578899988753 48999999
Q ss_pred ccceeEEecCCCChhhhhhhhhhhh
Q psy10828 150 RFDLVLVLLDSKSEQWDKMVSNYIL 174 (245)
Q Consensus 150 RFDLi~~l~D~~~~~~D~~ia~hIl 174 (245)
||++|- ......+.=..|+++-|
T Consensus 484 R~~ii~--~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 484 RMEVIR--LSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ceeeee--cCCCCHHHHHHHHHHhh
Confidence 997533 34444554555665555
No 44
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=89.63 E-value=0.49 Score=47.46 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=42.7
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
.+|-+-.|+||. |||++. +. ..+..|..++ |.+++. +.|-....++.+-||+|+|..
T Consensus 314 ~~Gl~e~A~gGTLfLdeI~~-------Lp~~~Q~kLl~~L-~e~~~~--r~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 314 RAGLFEIAHGGTLFLDEIGE-------MPLPLQTRLLRVL-EEKEVT--RVGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred cCCchhccCCCEEEEcChHh-------CCHHHHHHHHhhh-hcCeEE--ecCCCceeccceEEEEecCCC
Confidence 467788999999 677772 23 3688899999 877665 445556678889999999854
No 45
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=88.47 E-value=0.72 Score=43.59 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=40.8
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCCC-chHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSAG-PVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~~-~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
.+|.+..|++|. +|+++ .+.. .+..|..++ +.+.+. +.|-....+..+-+|+|++..
T Consensus 225 ~~g~~~~a~~gtl~ldei~-------~l~~~~q~~l~~~l-~~~~~~--~~~~~~~~~~~~rii~~t~~~ 284 (441)
T PRK10365 225 REGRFVEADGGTLFLDEIG-------DISPMMQVRLLRAI-QEREVQ--RVGSNQTISVDVRLIAATHRD 284 (441)
T ss_pred CCCceeECCCCEEEEeccc-------cCCHHHHHHHHHHH-ccCcEE--eCCCCceeeeceEEEEeCCCC
Confidence 467789999999 67766 2333 688899999 888764 334445567777889888744
No 46
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=88.32 E-value=0.76 Score=43.68 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=41.9
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
.+|.+-.|+||. +++.+ .+. ..+..|..++ +.+.++ +-|-....++.+-||+++|..
T Consensus 225 ~~g~~~~a~~gtl~l~~i~-------~l~~~~q~~l~~~l-~~~~~~--~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 225 TLGKIEYAHGGTLFLDEIG-------DLPLNLQAKLLRFL-QERVIE--RLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred CCCceeECCCCEEEEechh-------hCCHHHHHHHHHHH-hhCeEE--eCCCCceeeeceEEEEecCCC
Confidence 567788899999 66666 233 3688899999 887653 344445678889999999865
No 47
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=87.69 E-value=0.54 Score=46.46 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=47.7
Q ss_pred ceEEEEecccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCC
Q psy10828 54 LIELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNP 127 (245)
Q Consensus 54 ~~e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP 127 (245)
||.-.- ..|-+-.|+||. +||+..-.. +.+..|.-++ +++++ -+-|=..+.+..+=||||+|-
T Consensus 221 TGA~~~--r~G~fE~A~GGTLfLDEI~~mpl------~~Q~kLLRvL-qe~~~--~rvG~~~~i~vdvRiIaaT~~ 285 (464)
T COG2204 221 TGAITR--RIGRFEQANGGTLFLDEIGEMPL------ELQVKLLRVL-QEREF--ERVGGNKPIKVDVRIIAATNR 285 (464)
T ss_pred CCcccc--cCcceeEcCCceEEeeccccCCH------HHHHHHHHHH-HcCee--EecCCCcccceeeEEEeecCc
Confidence 444443 789999999999 788773221 4688899999 76665 466777778889999999994
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=86.46 E-value=3.6 Score=37.02 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=41.5
Q ss_pred ccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEe-eccc-----eeeEeecceeeeeecCCCcccCCCCChhhh
Q psy10828 69 KKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISF-PQAG-----LVCKLNTRCSIIAACNPKGHYDPNIPISVN 140 (245)
Q Consensus 69 a~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsi-aKag-----~~~~l~ar~sviAa~NP~g~~~~~~~~~~~ 140 (245)
..+++ |||.+.... ...+.|+++| |...+.+ ..+| ....++ .+.+++++|...
T Consensus 80 ~~~~vl~iDEi~~l~~------~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~~~~-~~~li~~t~~~~----------- 140 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSP------AVEELLYPAM-EDFRLDIVIGKGPSARSVRLDLP-PFTLVGATTRAG----------- 140 (305)
T ss_pred ccCCEEEEehHhhhCH------HHHHHhhHHH-hhhheeeeeccCccccceeecCC-CeEEEEecCCcc-----------
Confidence 34555 777773211 2467788999 7665443 1222 112233 356666665432
Q ss_pred ccCccCccCccceeEEecCCCChh
Q psy10828 141 IAIASPLLSRFDLVLVLLDSKSEQ 164 (245)
Q Consensus 141 i~l~~~LLsRFDLi~~l~D~~~~~ 164 (245)
.++++|.|||++++.+. ..+.+
T Consensus 141 -~l~~~l~sR~~~~~~l~-~l~~~ 162 (305)
T TIGR00635 141 -MLTSPLRDRFGIILRLE-FYTVE 162 (305)
T ss_pred -ccCHHHHhhcceEEEeC-CCCHH
Confidence 34578999998765554 44433
No 49
>PRK15115 response regulator GlrR; Provisional
Probab=86.02 E-value=1.2 Score=42.26 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=41.7
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNP 127 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP 127 (245)
..|.+-.|++|. |++++. +. ..+..|..+| |.+.+ ...|-....+.+|-+|++++.
T Consensus 220 ~~g~~~~a~~gtl~l~~i~~-------l~~~~q~~L~~~l-~~~~~--~~~g~~~~~~~~~rii~~~~~ 278 (444)
T PRK15115 220 REGLFQAAEGGTLFLDEIGD-------MPAPLQVKLLRVL-QERKV--RPLGSNRDIDIDVRIISATHR 278 (444)
T ss_pred CCCcEEECCCCEEEEEcccc-------CCHHHHHHHHHHH-hhCCE--EeCCCCceeeeeEEEEEeCCC
Confidence 577788999999 676662 23 3678899999 88876 344555566778999999884
No 50
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=85.30 E-value=1.4 Score=43.49 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=41.5
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
.+|.+-.|+||. ||+++. +. ..+..|..++ +.+.+ .+.|-....+..+-|||++|..
T Consensus 273 ~~g~~~~a~gGtL~ldeI~~-------L~~~~Q~~Ll~~l-~~~~~--~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 273 RSGKFELADGGTLFLDEIGE-------LPLALQAKLLRVL-QYGEI--QRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred CCcchhhcCCCEEEecChhh-------CCHHHHHHHHHHH-hcCCE--eeCCCCcceecceEEEEecCCC
Confidence 467788999999 677762 22 3678888999 77765 3444445677889999999865
No 51
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=85.24 E-value=1.5 Score=43.36 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=49.8
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCCh
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPI 137 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~ 137 (245)
.+|-+-.|++|. ||+++ ++. ..+..|..++ +.+.+. +.|-....+.++-||+++|.. .. .
T Consensus 282 ~~g~~~~a~~GtL~ldei~-------~L~~~~Q~~Ll~~l-~~~~~~--~~~~~~~~~~~~riI~~s~~~l~~------~ 345 (534)
T TIGR01817 282 RKGRFELADGGTLFLDEIG-------EISPAFQAKLLRVL-QEGEFE--RVGGNRTLKVDVRLVAATNRDLEE------A 345 (534)
T ss_pred CCCcccccCCCeEEEechh-------hCCHHHHHHHHHHH-hcCcEE--ECCCCceEeecEEEEEeCCCCHHH------H
Confidence 456677899999 77777 233 3688899999 887764 334334567788899998865 22 1
Q ss_pred hhhccCccCccCcccee
Q psy10828 138 SVNIAIASPLLSRFDLV 154 (245)
Q Consensus 138 ~~~i~l~~~LLsRFDLi 154 (245)
...-.+...|+.|+..+
T Consensus 346 ~~~~~f~~~L~~rl~~~ 362 (534)
T TIGR01817 346 VAKGEFRADLYYRINVV 362 (534)
T ss_pred HHcCCCCHHHHHHhcCC
Confidence 12334556666666543
No 52
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=84.67 E-value=3.1 Score=40.38 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=36.7
Q ss_pred hhcccCce--eccCCCCcCCCCCC-----------CCchHHHHHhhhccceeEeec-cceeeEeecceeeeeecCC
Q psy10828 66 IFQKKKAI--ISSVSPQKRGAPKS-----------AGPVAVCHSALWWAKEISFPQ-AGLVCKLNTRCSIIAACNP 127 (245)
Q Consensus 66 ~vLa~~Gv--ide~~~~k~~~~k~-----------~~~~~~l~EaM~EqqtIsiaK-ag~~~~l~ar~sviAa~NP 127 (245)
+-.|.+|| |||++...+ +. .+.+.+|.++| |...+.+.- .|.... ...+-++++.|+
T Consensus 169 ~~~a~~gIi~iDEIdkl~~---~~~~~~~~~d~s~~~vQ~~LL~~L-eg~~~~v~~~gg~~~~-~~~~~~i~t~ni 239 (412)
T PRK05342 169 VEKAQRGIVYIDEIDKIAR---KSENPSITRDVSGEGVQQALLKIL-EGTVASVPPQGGRKHP-QQEFIQVDTTNI 239 (412)
T ss_pred HHHcCCcEEEEechhhhcc---ccCCCCcCCCcccHHHHHHHHHHH-hcCeEEeCCCCCcCcC-CCCeEEeccCCc
Confidence 34568899 777772221 11 12578999999 988888853 333222 357778888887
No 53
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=84.66 E-value=2.6 Score=40.15 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=39.1
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
..|.+-.|++|. ||+.+. +. ..+..|.+.+ +.+.+.- .|-....+..+-||+++|..
T Consensus 220 ~~g~~~~a~~gtl~l~ei~~-------l~~~~q~~ll~~l-~~~~~~~--~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 220 RQGRFEQADGGTLFLDEIGD-------MPLDAQTRLLRVL-ADGEFYR--VGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred CCCcEEECCCCeEEEEchhh-------CCHHHHHHHHHHH-hcCcEEE--CCCCceeeeeeEEEEeCCCC
Confidence 356677889999 666662 22 3578899999 8877654 34334455666799998865
No 54
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=83.07 E-value=2.3 Score=42.90 Aligned_cols=57 Identities=9% Similarity=-0.001 Sum_probs=41.2
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
.+|.+-+|++|. ||+++ .+. ..+..|..++ |.+.++ +.|-....+.++-||+++|..
T Consensus 408 ~~g~~~~a~~GtL~ldei~-------~l~~~~Q~~Ll~~l-~~~~~~--~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 408 RLSKFELAHGGTLFLEKVE-------YLSPELQSALLQVL-KTGVIT--RLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred CCCceeECCCCEEEEcChh-------hCCHHHHHHHHHHH-hcCcEE--eCCCCceEEeeEEEEEeccCC
Confidence 456677899998 67766 233 3688899999 888764 334445567788899999964
No 55
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=82.79 E-value=5.1 Score=42.27 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=55.6
Q ss_pred eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccC---CC---CCh------hh
Q psy10828 74 ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYD---PN---IPI------SV 139 (245)
Q Consensus 74 ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~---~~---~~~------~~ 139 (245)
+||++ |+. +.+..|.++| |.+.++-.+ |..+.+. +|.||+++|-- .... .. ... ..
T Consensus 673 lDeie-------ka~~~v~~~Ll~~l-~~g~l~d~~-g~~vd~r-n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~ 742 (852)
T TIGR03346 673 FDEVE-------KAHPDVFNVLLQVL-DDGRLTDGQ-GRTVDFR-NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVL 742 (852)
T ss_pred Eeccc-------cCCHHHHHHHHHHH-hcCceecCC-CeEEecC-CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHH
Confidence 77777 333 4689999999 999998553 6655553 69999999953 2111 00 111 12
Q ss_pred hccCccCccCccceeEEecCCCChhhhhhhhhhh
Q psy10828 140 NIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYI 173 (245)
Q Consensus 140 ~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hI 173 (245)
.-.+.+.|+.|+|-|++..- .+.+.-..|+...
T Consensus 743 ~~~F~pel~~Rid~IivF~P-L~~e~l~~I~~l~ 775 (852)
T TIGR03346 743 RAHFRPEFLNRIDEIVVFHP-LGREQIARIVEIQ 775 (852)
T ss_pred HhhcCHHHhcCcCeEEecCC-cCHHHHHHHHHHH
Confidence 33688999999998777653 3333333444333
No 56
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=82.05 E-value=1.9 Score=41.29 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=49.9
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCCh
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPI 137 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~ 137 (245)
.+|.+-.|+||. |++++ .+. ..+..|..++ +.+.+.- .|-....+..|.||++++.. .. .
T Consensus 224 ~~g~~~~a~~Gtl~l~~i~-------~l~~~~q~~L~~~l-~~~~~~~--~~~~~~~~~~~rii~~~~~~l~~------~ 287 (469)
T PRK10923 224 RQGRFEQADGGTLFLDEIG-------DMPLDVQTRLLRVL-ADGQFYR--VGGYAPVKVDVRIIAATHQNLEQ------R 287 (469)
T ss_pred CCCCeeECCCCEEEEeccc-------cCCHHHHHHHHHHH-hcCcEEe--CCCCCeEEeeEEEEEeCCCCHHH------H
Confidence 567788899998 67776 233 3678899999 8777654 33333456788899999865 21 1
Q ss_pred hhhccCccCccCccce
Q psy10828 138 SVNIAIASPLLSRFDL 153 (245)
Q Consensus 138 ~~~i~l~~~LLsRFDL 153 (245)
.++..+...|+.||..
T Consensus 288 ~~~~~~~~~L~~~l~~ 303 (469)
T PRK10923 288 VQEGKFREDLFHRLNV 303 (469)
T ss_pred HHcCCchHHHHHHhcc
Confidence 2333455667777753
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=80.56 E-value=4.1 Score=42.65 Aligned_cols=94 Identities=9% Similarity=0.087 Sum_probs=57.2
Q ss_pred cCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cc-------cCCCCC--
Q psy10828 70 KKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GH-------YDPNIP-- 136 (245)
Q Consensus 70 ~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~-------~~~~~~-- 136 (245)
..|| +||++ |+. +.+..|.++| |.++++-. .|..+.+ .+|-||.++|-- .. |.....
T Consensus 557 p~sVlllDEie-------ka~~~v~~~LLq~l-d~G~ltd~-~g~~vd~-rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~ 626 (758)
T PRK11034 557 PHAVLLLDEIE-------KAHPDVFNLLLQVM-DNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNST 626 (758)
T ss_pred CCcEEEeccHh-------hhhHHHHHHHHHHH-hcCeeecC-CCceecC-CCcEEEEeCCcCHHHHhhcccCcccchhhH
Confidence 4567 67777 334 3689999999 99999864 4544333 467799999932 10 111110
Q ss_pred -h--hhhccCccCccCccceeEEecCCCChhhhhhhhhhhh
Q psy10828 137 -I--SVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYIL 174 (245)
Q Consensus 137 -~--~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl 174 (245)
. .-.-.|++.|+.|+|-|+.+.. .+.+.-..|++..+
T Consensus 627 ~~~~~~~~~f~pefl~Rid~ii~f~~-L~~~~l~~I~~~~l 666 (758)
T PRK11034 627 DAMEEIKKIFTPEFRNRLDNIIWFDH-LSTDVIHQVVDKFI 666 (758)
T ss_pred HHHHHHHHhcCHHHHccCCEEEEcCC-CCHHHHHHHHHHHH
Confidence 0 1123689999999998776543 34333345555444
No 58
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=79.60 E-value=1.6 Score=36.93 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=41.0
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
++|.+-.|++|. ||+++ . +. ..+..|..+| |.+++.- -|-....+.+|-|||++|-.
T Consensus 85 ~~G~l~~A~~GtL~Ld~I~--~-----L~~~~Q~~Ll~~l-~~~~~~~--~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 85 KKGLLEQANGGTLFLDEIE--D-----LPPELQAKLLRVL-EEGKFTR--LGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp BEHHHHHTTTSEEEEETGG--G-----S-HHHHHHHHHHH-HHSEEEC--CTSSSEEE--EEEEEEESS-
T ss_pred cCCceeeccceEEeecchh--h-----hHHHHHHHHHHHH-hhchhcc--ccccccccccceEEeecCcC
Confidence 679999999999 66666 2 23 3689999999 8887643 34445678899999999843
No 59
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=79.43 E-value=3 Score=41.78 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=40.5
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
.+|-+-+|++|. +|+++. +. ..+..|..++ +.+.+. +.|-....+..+-||+++|..
T Consensus 299 ~~Gl~e~A~gGTLfLdeI~~-------Lp~~~Q~~Ll~~L-~~~~~~--r~g~~~~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 299 RTGLIEAAHRGTLFLDEIGE-------MPLPLQTRLLRVL-EEREVV--RVGGTEPVPVDVRVVAATHCA 358 (526)
T ss_pred cccchhhcCCceEEecChHh-------CCHHHHHHHHHHH-hcCcEE--ecCCCceeeecceEEeccCCC
Confidence 456677899998 677762 22 3688899999 777653 445445667788899999854
No 60
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=77.60 E-value=3.6 Score=40.85 Aligned_cols=77 Identities=12% Similarity=0.089 Sum_probs=45.9
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCCh
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPI 137 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~ 137 (245)
.+|.+-.|++|. ||+++ .+. ..+..|...+ +.+++ .+.|-....+.++-||++++.. .. .
T Consensus 290 ~~g~~e~a~~GtL~LdeI~-------~L~~~~Q~~Ll~~l-~~~~~--~~~g~~~~~~~~vRiI~st~~~l~~------l 353 (520)
T PRK10820 290 KKGFFEQANGGSVLLDEIG-------EMSPRMQAKLLRFL-NDGTF--RRVGEDHEVHVDVRVICATQKNLVE------L 353 (520)
T ss_pred CCChhhhcCCCEEEEeChh-------hCCHHHHHHHHHHH-hcCCc--ccCCCCcceeeeeEEEEecCCCHHH------H
Confidence 356566799999 66666 223 3678888899 77654 3444434455667788887743 11 1
Q ss_pred hhhccCccCccCcccee
Q psy10828 138 SVNIAIASPLLSRFDLV 154 (245)
Q Consensus 138 ~~~i~l~~~LLsRFDLi 154 (245)
.+...+...|+.|+..+
T Consensus 354 ~~~g~f~~dL~~rL~~~ 370 (520)
T PRK10820 354 VQKGEFREDLYYRLNVL 370 (520)
T ss_pred HHcCCccHHHHhhcCee
Confidence 22233445666676543
No 61
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=77.56 E-value=1.6 Score=37.04 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=53.0
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-----------CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-----------GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-----------~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
.+|..-.+.+|| +||+| |- -. +.+..|..+| |.++++-.+ |.... -.+|-||+++|--
T Consensus 60 ~~~~v~~~~~gVVllDEid--Ka----~~~~~~~~~v~~~~V~~~LL~~l-e~g~~~d~~-g~~vd-~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 60 PPGYVGAEEGGVVLLDEID--KA----HPSNSGGADVSGEGVQNSLLQLL-EGGTLTDSY-GRTVD-TSNIIFIMTSNFG 130 (171)
T ss_dssp TTCHHHHHHHTEEEEETGG--GC----SHTTTTCSHHHHHHHHHHHHHHH-HHSEEEETT-CCEEE-GTTEEEEEEESSS
T ss_pred ccceeeccchhhhhhHHHh--hc----cccccccchhhHHHHHHHHHHHh-cccceeccc-ceEEE-eCCceEEEecccc
Confidence 456666778889 66666 32 12 3578999999 999998544 43333 3478999999965
Q ss_pred -cccCC-----CCC-------h--hhhccCccCccCcccee
Q psy10828 129 -GHYDP-----NIP-------I--SVNIAIASPLLSRFDLV 154 (245)
Q Consensus 129 -g~~~~-----~~~-------~--~~~i~l~~~LLsRFDLi 154 (245)
..... ... . .-+-.+++.|+.|||.|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 131 AEEIIDASRSGEAIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp THHHHHCHHHCTCCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred cchhhhhhccccccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 11110 000 0 12237999999999975
No 62
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=76.75 E-value=5.5 Score=40.33 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=42.0
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNP 127 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP 127 (245)
.+|-+=+||||- +||+..-.. ..++.|.-++ |.=.|-+-|=....++..-||||+|-
T Consensus 332 K~GlfE~A~gGTLFLDEIgempl------~LQaKLLRVL---QEkei~rvG~t~~~~vDVRIIAATN~ 390 (560)
T COG3829 332 KPGLFELANGGTLFLDEIGEMPL------PLQAKLLRVL---QEKEIERVGGTKPIPVDVRIIAATNR 390 (560)
T ss_pred CCcceeeccCCeEEehhhccCCH------HHHHHHHHHH---hhceEEecCCCCceeeEEEEEeccCc
Confidence 577788999998 788773211 2567777788 44446667777778899999999993
No 63
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=75.48 E-value=3.1 Score=31.36 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=41.0
Q ss_pred ccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhhccCccC
Q psy10828 69 KKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASP 146 (245)
Q Consensus 69 a~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~ 146 (245)
.+.++ +||.+... ......+.+.| ++..... ..+.++.+++++|+... ..+..+
T Consensus 83 ~~~~~lilDe~~~~~------~~~~~~~~~~i-~~~~~~~-------~~~~~~~ii~~~~~~~~----------~~~~~~ 138 (151)
T cd00009 83 AKPGVLFIDEIDSLS------RGAQNALLRVL-ETLNDLR-------IDRENVRVIGATNRPLL----------GDLDRA 138 (151)
T ss_pred CCCeEEEEeChhhhh------HHHHHHHHHHH-HhcCcee-------ccCCCeEEEEecCcccc----------CCcChh
Confidence 34555 67766210 12456677777 5544432 34678999999998721 455688
Q ss_pred ccCccceeEEe
Q psy10828 147 LLSRFDLVLVL 157 (245)
Q Consensus 147 LLsRFDLi~~l 157 (245)
+.+|||.++.+
T Consensus 139 ~~~r~~~~i~~ 149 (151)
T cd00009 139 LYDRLDIRIVI 149 (151)
T ss_pred HHhhhccEeec
Confidence 89999876654
No 64
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=75.24 E-value=3.2 Score=42.87 Aligned_cols=95 Identities=8% Similarity=0.120 Sum_probs=60.7
Q ss_pred cCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cc-------cCCCCC--
Q psy10828 70 KKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GH-------YDPNIP-- 136 (245)
Q Consensus 70 ~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~-------~~~~~~-- 136 (245)
..+| +||++ | +. +....|.++| +.+.++-. .|....+. +|.||.++|.- .. |.....
T Consensus 553 p~~VvllDEie--k-----a~~~~~~~Ll~~l-d~g~~~d~-~g~~vd~~-~~iii~Tsn~g~~~~~~~~~~f~~~~~~~ 622 (731)
T TIGR02639 553 PHCVLLLDEIE--K-----AHPDIYNILLQVM-DYATLTDN-NGRKADFR-NVILIMTSNAGASEMSKPPIGFGSENVES 622 (731)
T ss_pred CCeEEEEechh--h-----cCHHHHHHHHHhh-ccCeeecC-CCcccCCC-CCEEEECCCcchhhhhhccCCcchhhhHH
Confidence 4567 77776 3 33 4689999999 99999764 45554444 78899999964 21 111100
Q ss_pred -hh--hhccCccCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 137 -IS--VNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 137 -~~--~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
.. -.-.+++.|++|||-++++. ..+.+.-.+|+++.++
T Consensus 623 ~~~~~~~~~f~pef~~Rid~Vi~F~-pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 623 KSDKAIKKLFSPEFRNRLDAIIHFN-PLSEEVLEKIVQKFVD 663 (731)
T ss_pred HHHHHHHhhcChHHHhcCCeEEEcC-CCCHHHHHHHHHHHHH
Confidence 01 11258899999999877754 4555555566665554
No 65
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=72.26 E-value=8.7 Score=37.47 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=37.6
Q ss_pred cchhhcccCce--eccCCCCcCCCCCC-----------CCchHHHHHhhhccceeEee-ccceeeEeecceeeeeecCC
Q psy10828 63 AGEIFQKKKAI--ISSVSPQKRGAPKS-----------AGPVAVCHSALWWAKEISFP-QAGLVCKLNTRCSIIAACNP 127 (245)
Q Consensus 63 aGa~vLa~~Gv--ide~~~~k~~~~k~-----------~~~~~~l~EaM~EqqtIsia-Kag~~~~l~ar~sviAa~NP 127 (245)
+|.+-.|.+|| +||.+...+ +. .+.+.+|.++| |...++|. ..|....+ -.+-+|.+.|.
T Consensus 174 ~~~l~~a~~gIV~lDEIdkl~~---~~~~~s~~~dvsg~~vq~~LL~iL-eG~~~~v~~~~gr~~~~-~~~i~i~TsNi 247 (413)
T TIGR00382 174 DYDVEKAQKGIIYIDEIDKISR---KSENPSITRDVSGEGVQQALLKII-EGTVANVPPQGGRKHPY-QEFIQIDTSNI 247 (413)
T ss_pred cccHHhcccceEEecccchhch---hhccccccccccchhHHHHHHHHh-hccceecccCCCccccC-CCeEEEEcCCc
Confidence 34455677888 777772211 11 14678999999 96666664 44443332 46778888887
No 66
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=71.89 E-value=0.96 Score=43.36 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=55.6
Q ss_pred EEEEecccchhhcccCceeccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC--cccC
Q psy10828 56 ELEIFSAAGEIFQKKKAIISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK--GHYD 132 (245)
Q Consensus 56 e~~i~~~aGa~vLa~~Gvide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~--g~~~ 132 (245)
.|+. -|++..|++|++.-.+..|. + +-+--|+-+. +.+.|.+.+.. ..++....|||.+||. ..|.
T Consensus 222 af~~---~G~l~~aNrGi~ef~E~~K~-----~~~~L~~LL~~t-qEg~ik~~~~~--~~i~~D~liiAhsNe~E~~~f~ 290 (358)
T PF08298_consen 222 AFSY---SGELNRANRGIMEFVEMLKA-----PIEFLHPLLTAT-QEGNIKVDEDF--GMIPFDELIIAHSNEEEYNKFK 290 (358)
T ss_pred eEee---ccHHHHhhchhHHHHHHhcC-----cHHHHHHHhcch-hcCceecCCcc--cccccceeEEecCCHHHHHHHh
Confidence 4554 89999999999555454433 2 2355566677 77777664322 2368889999999987 5565
Q ss_pred CCCChhhhccCccCccCccceeEE
Q psy10828 133 PNIPISVNIAIASPLLSRFDLVLV 156 (245)
Q Consensus 133 ~~~~~~~~i~l~~~LLsRFDLi~~ 156 (245)
.++.. .+|++|+-.|=+
T Consensus 291 ~~~~~-------eAf~DRi~~I~V 307 (358)
T PF08298_consen 291 NNKNN-------EAFKDRIEVIKV 307 (358)
T ss_pred ccccc-------hhhhhheEEEec
Confidence 44322 689999976654
No 67
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=69.16 E-value=5.5 Score=40.70 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=39.8
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
..|.+-+|++|. ||+++.... +.+..|..++ +.+.+.- .|-....+..+-+||++|..
T Consensus 462 ~~g~le~a~~GtL~Ldei~~L~~------~~Q~~L~~~l-~~~~~~~--~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 462 RIGRFELADKSSLFLDEVGDMPL------ELQPKLLRVL-QEQEFER--LGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred hhhHHHhcCCCeEEEechhhCCH------HHHHHHHHHH-HhCCEEe--CCCCCcccceEEEEEeCCCC
Confidence 457788999998 777772211 3688899999 7776543 33334456677899999864
No 68
>PHA01747 putative ATP-dependent protease
Probab=68.25 E-value=16 Score=35.72 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=87.8
Q ss_pred cceeeEEEeCCccCCCCC--------CCCCC--Cc--ccccccCcccceEEEEecccchhhcccCceeccCCCCcCCCCC
Q psy10828 19 RNTSKTVTLGGTRTGPDE--------PPAGP--GA--VSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSPQKRGAPK 86 (245)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~--------~~~~~--~~--~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~~k~~~~k 86 (245)
||+ |.+-||-+.||++- .|-+. |. +|.+-- +-.+ .+.|.+-+.|.=+.||..-.+-. .
T Consensus 189 ~Ny-NliELgPRGTGKS~~f~eis~fsp~~iSGG~~TvA~LFy-N~~t------~~~GLVg~~D~VaFDEVa~i~f~--~ 258 (425)
T PHA01747 189 RPV-HIIELSNRGTGKTTTFVILQELFNFRYYTEPPTYANLVY-DAKT------NALGLVFLSNGLIFDEIQTWKDS--N 258 (425)
T ss_pred CCe-eEEEecCCCCChhhHHHHhhhcCCceeeCCCCchHHheE-ecCC------CceeEEeeccEEEEEccccccCC--C
Confidence 554 89999999999864 22111 11 111111 1112 25565666655558888833210 0
Q ss_pred CCCchHHHHHhhhccceeEeeccceee--EeecceeeeeecCCC----cccCCCCChh----h--hc-cCccCccCccce
Q psy10828 87 SAGPVAVCHSALWWAKEISFPQAGLVC--KLNTRCSIIAACNPK----GHYDPNIPIS----V--NI-AIASPLLSRFDL 153 (245)
Q Consensus 87 ~~~~~~~l~EaM~EqqtIsiaKag~~~--~l~ar~sviAa~NP~----g~~~~~~~~~----~--~i-~l~~~LLsRFDL 153 (245)
..+....|..-| |++.-+-.+.+-.. ++++.||++=+-|+. +.|....-+. + -. .+.++||+||.+
T Consensus 259 ~kdiv~IMKdYM-esG~FsRG~~~~ss~~sI~a~asiVf~GNin~~~l~~~~~~~~l~~~Lp~~~~~r~~~sA~LDRIhi 337 (425)
T PHA01747 259 MRAINSTLSTGM-ENCVWTRGAGTESDAATIVRCIPIIFAGNPDSSTLDTYQTPNYIKNYLVSYELFQSLTKAILDRIAI 337 (425)
T ss_pred HHHHHHHHHHHh-hcceeecCCCCcccchhhccceeEEEecCCCCccccccccchhHHHhcchhhhhcccchHHhhhhhh
Confidence 123466777789 99998887754444 788999999998855 4554321111 1 11 236899999994
Q ss_pred eEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhh
Q psy10828 154 VLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIK 203 (245)
Q Consensus 154 i~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR 203 (245)
+-.- .+.-..| |+. ....+-..-||.||.+.+
T Consensus 338 ~g~~--~pkIs~d-----~~~-----------sG~vL~~tilr~~i~~~q 369 (425)
T PHA01747 338 IIVN--EKKITYD-----DII-----------SGRVLYPTILRGLISLVQ 369 (425)
T ss_pred cccc--cCcCCHH-----Hhc-----------ccceeHHHHHHHHHHHHH
Confidence 4431 1211112 111 223455667888888886
No 69
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=65.23 E-value=8.3 Score=40.21 Aligned_cols=83 Identities=18% Similarity=0.296 Sum_probs=46.9
Q ss_pred cCce--eccCCCCcCCCCCCC-CchHHHHHhhhcccee-Eee--ccceeeEeecceeeeeecCCCcccCCCCChhhhccC
Q psy10828 70 KKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEI-SFP--QAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAI 143 (245)
Q Consensus 70 ~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtI-sia--Kag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l 143 (245)
.+.| |||++..-+ ... +...+|.+.| +..+- .+. .-+....+ .++.+|+++|+.. .|
T Consensus 414 ~~~villDEidk~~~---~~~~~~~~aLl~~l-d~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~~~------------~i 476 (775)
T TIGR00763 414 KNPLFLLDEIDKIGS---SFRGDPASALLEVL-DPEQNNAFSDHYLDVPFDL-SKVIFIATANSID------------TI 476 (775)
T ss_pred CCCEEEEechhhcCC---ccCCCHHHHHHHhc-CHHhcCccccccCCceecc-CCEEEEEecCCch------------hC
Confidence 3456 777772211 112 2357899999 74211 111 11222222 4778899999852 56
Q ss_pred ccCccCccceeEEecCCCChhhhhhhhh
Q psy10828 144 ASPLLSRFDLVLVLLDSKSEQWDKMVSN 171 (245)
Q Consensus 144 ~~~LLsRFDLi~~l~D~~~~~~D~~ia~ 171 (245)
+++|++||++| -....+.+.-..|+.
T Consensus 477 ~~~L~~R~~vi--~~~~~~~~e~~~I~~ 502 (775)
T TIGR00763 477 PRPLLDRMEVI--ELSGYTEEEKLEIAK 502 (775)
T ss_pred CHHHhCCeeEE--ecCCCCHHHHHHHHH
Confidence 79999999743 445555554445553
No 70
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=63.36 E-value=8.9 Score=40.65 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=58.5
Q ss_pred cCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-ccc-----CCC-----C
Q psy10828 70 KKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHY-----DPN-----I 135 (245)
Q Consensus 70 ~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~-----~~~-----~ 135 (245)
..+| +||++ | .. +..+.|.++| +.+.++-+ .|..+.+. +|.||-++|-- +.+ +.. .
T Consensus 668 p~svvllDEie--k-----a~~~v~~~Llq~l-d~g~l~d~-~Gr~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~ 737 (852)
T TIGR03345 668 PYSVVLLDEVE--K-----AHPDVLELFYQVF-DKGVMEDG-EGREIDFK-NTVILLTSNAGSDLIMALCADPETAPDPE 737 (852)
T ss_pred CCcEEEEechh--h-----cCHHHHHHHHHHh-hcceeecC-CCcEEecc-ccEEEEeCCCchHHHHHhccCcccCcchH
Confidence 4456 77776 3 33 3688999999 99999765 46666665 79999999943 211 111 0
Q ss_pred Chh------hhccCccCccCccceeEEecCCCChhhhhhhhhhhh
Q psy10828 136 PIS------VNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYIL 174 (245)
Q Consensus 136 ~~~------~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl 174 (245)
... -.-.|+++|++|+| |+ .+...+.+.-.+|++.-+
T Consensus 738 ~~~~~~~~~~~~~f~PEflnRi~-iI-~F~pLs~e~l~~Iv~~~L 780 (852)
T TIGR03345 738 ALLEALRPELLKVFKPAFLGRMT-VI-PYLPLDDDVLAAIVRLKL 780 (852)
T ss_pred HHHHHHHHHHHHhccHHHhccee-EE-EeCCCCHHHHHHHHHHHH
Confidence 011 11259999999999 44 444666555555554444
No 71
>CHL00095 clpC Clp protease ATP binding subunit
Probab=61.46 E-value=12 Score=39.42 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=57.8
Q ss_pred eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-c---------ccCCCC------C
Q psy10828 74 ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-G---------HYDPNI------P 136 (245)
Q Consensus 74 ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g---------~~~~~~------~ 136 (245)
+||.+ |+. +...+|.++| |.+.++-++ |....+ .+|.||.++|-- . -|.... .
T Consensus 617 lDeie-------ka~~~v~~~Llq~l-e~g~~~d~~-g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~ 686 (821)
T CHL00095 617 FDEIE-------KAHPDIFNLLLQIL-DDGRLTDSK-GRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQ 686 (821)
T ss_pred ECChh-------hCCHHHHHHHHHHh-ccCceecCC-CcEEec-CceEEEEeCCcchHHHHhhccccCCccccccccccc
Confidence 67766 334 3689999999 999998765 566665 489999999953 2 122111 0
Q ss_pred ---hhh------hccCccCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 137 ---ISV------NIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 137 ---~~~------~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
+.+ .-.++|.||+|+|-|+++.- .+.+.-..|++..++
T Consensus 687 ~~~~~~~~~~~~~~~f~peflnRid~ii~F~p-L~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 687 YKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQ-LTKNDVWEIAEIMLK 733 (821)
T ss_pred HHHHHHHHHHHHHHhcCHHHhccCCeEEEeCC-CCHHHHHHHHHHHHH
Confidence 011 11488999999998777653 344444455555443
No 72
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=59.05 E-value=16 Score=42.72 Aligned_cols=85 Identities=20% Similarity=0.344 Sum_probs=63.6
Q ss_pred ceEEEEecccchhhcccC--ce--eccCCCCcCCCCCCCCchHHHHHhhhccc-eeEeeccc---eeeEeecceeeeeec
Q psy10828 54 LIELEIFSAAGEIFQKKK--AI--ISSVSPQKRGAPKSAGPVAVCHSALWWAK-EISFPQAG---LVCKLNTRCSIIAAC 125 (245)
Q Consensus 54 ~~e~~i~~~aGa~vLa~~--Gv--ide~~~~k~~~~k~~~~~~~l~EaM~Eqq-tIsiaKag---~~~~l~ar~sviAa~ 125 (245)
..||. -|.+|-|=+ .. +||+.... +..++.|..++ |.| |+.++--| -..+-.-.+.++|+|
T Consensus 1279 lfeW~----DGpLV~AMk~GdfFLlDEIsLAd------DSVLERLNSVL-E~~RtL~l~E~g~a~~~vtA~dgF~ffATM 1347 (4600)
T COG5271 1279 LFEWK----DGPLVKAMKCGDFFLLDEISLAD------DSVLERLNSVL-ESQRTLYLTETGNAAEEVTAHDGFRFFATM 1347 (4600)
T ss_pred heeec----cchHHHHHhcCCeeEeeeccccc------hHHHHHHHHhh-cccceEEEeecCCccceeeeccCceEEEee
Confidence 36774 788887743 22 88888321 23689999999 755 56777555 677778899999999
Q ss_pred CCCcccCCCCChhhhccCccCccCccceeEE
Q psy10828 126 NPKGHYDPNIPISVNIAIASPLLSRFDLVLV 156 (245)
Q Consensus 126 NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~ 156 (245)
||-|-|... .|+|+|-.||-=|++
T Consensus 1348 NPGGDyGKk-------ELSPALRNRFTEiwv 1371 (4600)
T COG5271 1348 NPGGDYGKK-------ELSPALRNRFTEIWV 1371 (4600)
T ss_pred CCCCccchh-------hCCHHHhcccceEee
Confidence 999877644 478999999998886
No 73
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=57.06 E-value=69 Score=30.49 Aligned_cols=123 Identities=13% Similarity=0.144 Sum_probs=68.1
Q ss_pred cccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEee--cc--ceeeEee-cceeeeeecCCCcccCCCCChhhh
Q psy10828 68 QKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFP--QA--GLVCKLN-TRCSIIAACNPKGHYDPNIPISVN 140 (245)
Q Consensus 68 La~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsia--Ka--g~~~~l~-ar~sviAa~NP~g~~~~~~~~~~~ 140 (245)
|..|-| |||.. +. ....-+.|.-|| |.=.+-|- |. .....++ ..+++++|+--.|
T Consensus 101 Le~~DVLFIDEIH--rl----~~~vEE~LYpaM-EDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G----------- 162 (332)
T COG2255 101 LEEGDVLFIDEIH--RL----SPAVEEVLYPAM-EDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG----------- 162 (332)
T ss_pred CCcCCeEEEehhh--hc----ChhHHHHhhhhh-hheeEEEEEccCCccceEeccCCCeeEeeeccccc-----------
Confidence 445666 66666 22 113568899999 99888775 22 2222222 2466676654333
Q ss_pred ccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCC-C----CC-------CCCCCCCCCHHHHHHHHHHhh-ccCC
Q psy10828 141 IAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRL-G----PS-------SNQATSLWDVEKLQAYFYLIK-GLRP 207 (245)
Q Consensus 141 i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~-~----~~-------~~~~~~~l~~e~LrkYIayAR-~~~P 207 (245)
.|+.||-+||.+++-+.- ..+..|++-|.+.... . ++ -....+-+-..+||+---||. +=.-
T Consensus 163 -~lt~PLrdRFGi~~rlef----Y~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~ 237 (332)
T COG2255 163 -MLTNPLRDRFGIIQRLEF----YTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDG 237 (332)
T ss_pred -cccchhHHhcCCeeeeec----CCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcCC
Confidence 577999999999988642 3333444444332211 0 00 011234455566666666665 4455
Q ss_pred CCCHHH
Q psy10828 208 QMTLEA 213 (245)
Q Consensus 208 ~LS~EA 213 (245)
.++.+.
T Consensus 238 ~I~~~i 243 (332)
T COG2255 238 DIDRDI 243 (332)
T ss_pred cccHHH
Confidence 566553
No 74
>KOG2545|consensus
Probab=51.95 E-value=25 Score=35.05 Aligned_cols=39 Identities=15% Similarity=0.369 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHhhcC
Q psy10828 191 DVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQRKADM 229 (245)
Q Consensus 191 ~~e~LrkYIayAR~~~P~LS~EA~~~I~~yY~~lR~~~~ 229 (245)
+.+..|.|+..+|++.-.+++|..++|..-|+.+|+.+.
T Consensus 459 ~l~q~rcyltt~r~l~~nIsee~t~~iq~dfV~mRq~n~ 497 (543)
T KOG2545|consen 459 DLLQFRCYLTTMRNLRANISEEMTDYIQSDFVSMRQYNK 497 (543)
T ss_pred HHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhhCc
Confidence 457789999999999999999999999999999999764
No 75
>PRK10865 protein disaggregation chaperone; Provisional
Probab=50.91 E-value=47 Score=35.27 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=58.7
Q ss_pred cCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-c----ccCCCC--Ch--
Q psy10828 70 KKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-G----HYDPNI--PI-- 137 (245)
Q Consensus 70 ~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g----~~~~~~--~~-- 137 (245)
..+| +||++ |+. +.+..|.++| |.+.++-. .|..+.+. +|.||.++|-- . +|.... ..
T Consensus 670 p~~vLllDEie-------ka~~~v~~~Ll~il-e~g~l~d~-~gr~vd~r-n~iiI~TSN~g~~~~~~~~~~~~~~~~~~ 739 (857)
T PRK10865 670 PYSVILLDEVE-------KAHPDVFNILLQVL-DDGRLTDG-QGRTVDFR-NTVVIMTSNLGSDLIQERFGELDYAHMKE 739 (857)
T ss_pred CCCeEEEeehh-------hCCHHHHHHHHHHH-hhCceecC-CceEEeec-ccEEEEeCCcchHHHHHhccccchHHHHH
Confidence 4467 77776 333 3689999999 99988743 35544443 57889999963 2 222111 01
Q ss_pred ----hhhccCccCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 138 ----SVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 138 ----~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
...-.+.+.|++|+|-+++..- .+.+.-..|+++.+.
T Consensus 740 ~~~~~~~~~f~PELlnRld~iivF~P-L~~edl~~Iv~~~L~ 780 (857)
T PRK10865 740 LVLGVVSHNFRPEFINRIDEVVVFHP-LGEQHIASIAQIQLQ 780 (857)
T ss_pred HHHHHHcccccHHHHHhCCeeEecCC-CCHHHHHHHHHHHHH
Confidence 1123688999999997776553 444444455555554
No 76
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=49.19 E-value=13 Score=37.46 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=47.5
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-------cccC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-------GHYD 132 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-------g~~~ 132 (245)
+.|-+=|||||- +||+-.-.- .-++.|.-++ |.=-|-+-|-..+++...-||||+|-. |+|.
T Consensus 309 r~GrFElAdGGTLFLDEIGelPL------~lQaKLLRvL---QegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FR 379 (550)
T COG3604 309 RRGRFELADGGTLFLDEIGELPL------ALQAKLLRVL---QEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFR 379 (550)
T ss_pred cCcceeecCCCeEechhhccCCH------HHHHHHHHHH---hhcceeecCCCceeEEEEEEEeccchhHHHHHHcCcch
Confidence 788889999999 676662211 2567788888 444467889899999999999999932 6666
Q ss_pred CC
Q psy10828 133 PN 134 (245)
Q Consensus 133 ~~ 134 (245)
.+
T Consensus 380 aD 381 (550)
T COG3604 380 AD 381 (550)
T ss_pred hh
Confidence 44
No 77
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=48.21 E-value=7.1 Score=40.16 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=53.4
Q ss_pred eEEEEecccchhhcccCceeccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC--cccC
Q psy10828 55 IELEIFSAAGEIFQKKKAIISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK--GHYD 132 (245)
Q Consensus 55 ~e~~i~~~aGa~vLa~~Gvide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~--g~~~ 132 (245)
..|+. -|++..|++|++--.+.+|. +.+.||--+--.|+=+|.+.+-...++..-.|||.+|-. ..|.
T Consensus 243 ~aysf---~G~L~~aNrGl~EFvEm~K~-------~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE~E~~~F~ 312 (644)
T PRK15455 243 DAYSY---SGGLCRANQGLLEFVEMFKA-------PIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNESEWQTFR 312 (644)
T ss_pred ccccC---CchhhhccCCcEeeHHHhcC-------cHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCHHHHHHHh
Confidence 35664 89999999999655565544 445555544233555554434445678999999999955 6665
Q ss_pred CCCChhhhccCccCccCcccee
Q psy10828 133 PNIPISVNIAIASPLLSRFDLV 154 (245)
Q Consensus 133 ~~~~~~~~i~l~~~LLsRFDLi 154 (245)
.++. -.+|++|.=+|
T Consensus 313 ~nk~-------nEA~~DRi~~V 327 (644)
T PRK15455 313 NNKN-------NEAFLDRIYIV 327 (644)
T ss_pred cCcc-------chhhhceEEEE
Confidence 4442 26777776544
No 78
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=43.30 E-value=12 Score=37.39 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=36.1
Q ss_pred eeeEEEeCCccCCC-----CCCCCCCCccccccc-CcccceE---EEEecccchhhcccCce--eccCCCCcCCCCCCCC
Q psy10828 21 TSKTVTLGGTRTGP-----DEPPAGPGAVSKARG-PQFGLIE---LEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAG 89 (245)
Q Consensus 21 ~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~-~~~g~~e---~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~ 89 (245)
|.=-++||-..+.. ++.|.-.-||..... .+.|+-. -.| +||++--|+||+ |+-.+...- ..
T Consensus 276 Y~VNllVdn~~~~gaPVI~e~~Pt~~nLfG~Ie~~~~~G~~~td~~~I--~~GaLhkANGGyLIL~a~~LL~~-----p~ 348 (509)
T PF13654_consen 276 YRVNLLVDNSDTKGAPVIYEDNPTYSNLFGRIEYESEMGTLVTDFTLI--KPGALHKANGGYLILDAEDLLAN-----PY 348 (509)
T ss_dssp ---EEEE--TT-SS--EEE-TT--HHHHH-EE-----------GGGGE--E--HHHHTTTSEEEETTGGGS-H-----HH
T ss_pred cccEEEEeCCCCCCCcEEEeCCCCHHHCcEEEEEECCCCCEecCcceE--cCceEEecCCeEEEEEHHHhhhC-----hH
Confidence 33345566543331 224455567774433 3334321 235 899999999999 555553211 12
Q ss_pred chHHHHHhhhccceeEeecc
Q psy10828 90 PVAVCHSALWWAKEISFPQA 109 (245)
Q Consensus 90 ~~~~l~EaM~EqqtIsiaKa 109 (245)
.-..|..++ .++.+.|--.
T Consensus 349 ~W~~LKr~L-~~~~i~ie~~ 367 (509)
T PF13654_consen 349 AWERLKRAL-RTGEIEIESP 367 (509)
T ss_dssp -HHHHHHHH-HHSEE--B-S
T ss_pred HHHHHHHHH-HcCceeeccc
Confidence 568899999 9999988654
No 79
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=42.63 E-value=87 Score=31.11 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=77.5
Q ss_pred hhhcc-cCce--eccCCCCcCCCC--------CCCCchHHHHHhhhccceeEeeccceeeEeec-ceeeeeecCCCcccC
Q psy10828 65 EIFQK-KKAI--ISSVSPQKRGAP--------KSAGPVAVCHSALWWAKEISFPQAGLVCKLNT-RCSIIAACNPKGHYD 132 (245)
Q Consensus 65 a~vLa-~~Gv--ide~~~~k~~~~--------k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~a-r~sviAa~NP~g~~~ 132 (245)
|+-.| ..|| |||+| |-..+ ...+.+.+|.-.| |--+|++ |.|. +++ +..|||+ |-|.
T Consensus 243 ai~~ae~~GIVfiDEiD--KIa~~~~~~~~DvS~eGVQ~~LLki~-EG~~v~~-k~~~---i~T~~ILFI~~----GAF~ 311 (443)
T PRK05201 243 AIERVEQNGIVFIDEID--KIAARGGSSGPDVSREGVQRDLLPLV-EGSTVST-KYGM---VKTDHILFIAS----GAFH 311 (443)
T ss_pred HHHHHHcCCEEEEEcch--hhcccCCCCCCCCCccchhccccccc-ccceeee-ccee---EECCceeEEec----CCcC
Confidence 34554 9999 55555 33211 0134667788888 9888887 5542 222 2333332 5665
Q ss_pred CCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhh--ccCCCCC
Q psy10828 133 PNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIK--GLRPQMT 210 (245)
Q Consensus 133 ~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR--~~~P~LS 210 (245)
..++ .+|-|.|..||-+++.+..- +.+ | =.+||..- ...+++.|.++-+ .+.=.+|
T Consensus 312 ~~kp----~DlIPEl~GR~Pi~v~L~~L-~~~-d---L~~ILteP-------------~nsLikQy~~Lf~~egv~L~Ft 369 (443)
T PRK05201 312 VSKP----SDLIPELQGRFPIRVELDAL-TEE-D---FVRILTEP-------------KASLIKQYQALLATEGVTLEFT 369 (443)
T ss_pred CCCh----hhccHHHhCccceEEECCCC-CHH-H---HHHHhcCC-------------hhHHHHHHHHHHhhcCcEEEEc
Confidence 4433 24669999999999887532 211 1 22444311 2458999999877 4888899
Q ss_pred HHHHHHHHHHHHH
Q psy10828 211 LEANRILTRYYQA 223 (245)
Q Consensus 211 ~EA~~~I~~yY~~ 223 (245)
++|-+.|.+.=..
T Consensus 370 d~Al~~IA~~A~~ 382 (443)
T PRK05201 370 DDAIRRIAEIAYQ 382 (443)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888866443
No 80
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=39.09 E-value=91 Score=30.95 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=76.3
Q ss_pred cccCce--eccCCCCcCCCC--------CCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCCh
Q psy10828 68 QKKKAI--ISSVSPQKRGAP--------KSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPI 137 (245)
Q Consensus 68 La~~Gv--ide~~~~k~~~~--------k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~ 137 (245)
.+..|| |||+| |-..+ ...+.+.+|.-.| |--+|++ |.|.+-| .+..+||+ |-|...++
T Consensus 245 ~e~~GIVfiDEiD--KIa~~~~~~~~DvS~eGVQ~~LLkil-EGt~v~~-k~~~v~T--~~ILFI~~----GAF~~~kp- 313 (441)
T TIGR00390 245 VEQSGIIFIDEID--KIAKKGESSGADVSREGVQRDLLPIV-EGSTVNT-KYGMVKT--DHILFIAA----GAFQLAKP- 313 (441)
T ss_pred HHcCCEEEEEchh--hhcccCCCCCCCCCccchhccccccc-cCceeee-cceeEEC--CceeEEec----CCcCCCCh-
Confidence 378999 56655 32210 1123567788888 9888886 6653221 22334432 55554332
Q ss_pred hhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhhc--cCCCCCHHHHH
Q psy10828 138 SVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKG--LRPQMTLEANR 215 (245)
Q Consensus 138 ~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR~--~~P~LS~EA~~ 215 (245)
.+|=|.|..||-+++.+..- +.+ | =.+||..- ...+++.|.++-+. +.=.++++|-+
T Consensus 314 ---~DlIPEl~GR~Pi~v~L~~L-~~e-d---L~rILteP-------------~nsLikQy~~Lf~~egv~L~Ftd~Al~ 372 (441)
T TIGR00390 314 ---SDLIPELQGRFPIRVELQAL-TTD-D---FERILTEP-------------KNSLIKQYKALMKTEGVNIEFSDEAIK 372 (441)
T ss_pred ---hhccHHHhCccceEEECCCC-CHH-H---HHHHhcCC-------------hhHHHHHHHHHHhhcCcEEEEeHHHHH
Confidence 23679999999999887543 221 1 23444311 12589999999883 88889999998
Q ss_pred HHHHHHHH
Q psy10828 216 ILTRYYQA 223 (245)
Q Consensus 216 ~I~~yY~~ 223 (245)
.|.+.=..
T Consensus 373 ~IA~~A~~ 380 (441)
T TIGR00390 373 RIAELAYN 380 (441)
T ss_pred HHHHHHHH
Confidence 88876443
No 81
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.48 E-value=1.1e+02 Score=30.38 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=30.4
Q ss_pred cccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeee-eecCCCcccCCCCChhhhccCc
Q psy10828 68 QKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSII-AACNPKGHYDPNIPISVNIAIA 144 (245)
Q Consensus 68 La~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~svi-Aa~NP~g~~~~~~~~~~~i~l~ 144 (245)
.++..| |||.+... ...+++|...| |.. +..+.++ ++.||. .++
T Consensus 115 ~~~~kVvIIDE~h~Lt------~~a~~~LLk~L-E~p-------------~~~vv~Ilattn~~-------------kl~ 161 (472)
T PRK14962 115 EGKYKVYIIDEVHMLT------KEAFNALLKTL-EEP-------------PSHVVFVLATTNLE-------------KVP 161 (472)
T ss_pred cCCeEEEEEEChHHhH------HHHHHHHHHHH-HhC-------------CCcEEEEEEeCChH-------------hhh
Confidence 345556 67766321 13567888888 751 2234444 444432 357
Q ss_pred cCccCccce
Q psy10828 145 SPLLSRFDL 153 (245)
Q Consensus 145 ~~LLsRFDL 153 (245)
++|.||+-+
T Consensus 162 ~~L~SR~~v 170 (472)
T PRK14962 162 PTIISRCQV 170 (472)
T ss_pred HHHhcCcEE
Confidence 889999963
No 82
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=30.85 E-value=42 Score=33.38 Aligned_cols=196 Identities=18% Similarity=0.163 Sum_probs=108.9
Q ss_pred cccceeeEEEeCCccCCCCC-----CCCCC----CcccccccCcccceEEEEecccchhhcccCceeccCCCCcCCCCCC
Q psy10828 17 AERNTSKTVTLGGTRTGPDE-----PPAGP----GAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSPQKRGAPKS 87 (245)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~~k~~~~k~ 87 (245)
-|+| -|.+-||-+-||+.- +|-+. |.+..+ .=|.+..- .+.|.+-+-|-=+.||..--+- +.
T Consensus 205 VE~N-~NliELgPrGTGKS~vy~eiSp~~~liSGG~~T~A--~LFyn~~~---~~~GlV~~~D~VafDEv~~i~f---~d 275 (457)
T PF13337_consen 205 VERN-YNLIELGPRGTGKSYVYKEISPYGILISGGQVTVA--KLFYNMST---GQIGLVGRWDVVAFDEVAGIKF---KD 275 (457)
T ss_pred cccc-cceEEEcCCCCCceeehhhcCcccEEEECCCcchH--HheeeccC---CcceeeeeccEEEEEeccCccc---CC
Confidence 5888 589999999999875 55543 222111 11222211 1455555544434788873322 22
Q ss_pred CCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC---cccCCC----CChhhhccCccCccCccceeEEecCC
Q psy10828 88 AGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK---GHYDPN----IPISVNIAIASPLLSRFDLVLVLLDS 160 (245)
Q Consensus 88 ~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~---g~~~~~----~~~~~~i~l~~~LLsRFDLi~~l~D~ 160 (245)
.+....|..-| |++..+..|. +..+.||++=..|.. ...... .++.+... .++||+||...+.-.+.
T Consensus 276 ~d~i~imK~YM-esG~fsRG~~----~i~a~as~vf~GNi~~~v~~~~~~~~lf~~lP~~~~-DsAflDRiH~~iPGWei 349 (457)
T PF13337_consen 276 KDEIQIMKDYM-ESGSFSRGKE----EINADASMVFVGNINQSVENMLKTSHLFEPLPEEMR-DSAFLDRIHGYIPGWEI 349 (457)
T ss_pred hHHHHHHHHHH-hccceeeccc----ccccceeEEEEcCcCCcchhccccchhhhhcCHHHH-HHHHHhHhheeccCccc
Confidence 34568888999 9999988874 678899999888854 111111 12334444 67999999998886666
Q ss_pred CChhhhhhh----------hhhh--hccCCCCCC------CCCCCCCCCHHHH-HHHHHHhhccCCC--CCHHHHHHHHH
Q psy10828 161 KSEQWDKMV----------SNYI--LFGKRLGPS------SNQATSLWDVEKL-QAYFYLIKGLRPQ--MTLEANRILTR 219 (245)
Q Consensus 161 ~~~~~D~~i----------a~hI--l~~~~~~~~------~~~~~~~l~~e~L-rkYIayAR~~~P~--LS~EA~~~I~~ 219 (245)
|--..+-.. |+.+ |+....... -......=+..-+ |..=+|.|=+.|- +++|-.+.+.+
T Consensus 350 Pk~~~e~~t~~~gl~~Dy~aE~l~~LR~~~~~~~~~~~~~lg~~~~~RD~~AV~kt~SgllKLL~P~~~~~~ee~~~~l~ 429 (457)
T PF13337_consen 350 PKIRPEMFTNGYGLIVDYFAEILHELRKQSYSDAVDKYFKLGSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKEELEECLR 429 (457)
T ss_pred cccCHHHccCCceeeHHHHHHHHHHHHHHHHHHHHHhhEeeCCCcchhhHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHH
Confidence 644332211 1100 010000000 0001111233333 3344566656775 66777788888
Q ss_pred HHHHHHhh
Q psy10828 220 YYQAQRKA 227 (245)
Q Consensus 220 yY~~lR~~ 227 (245)
+=+++|+.
T Consensus 430 ~A~e~R~r 437 (457)
T PF13337_consen 430 PALEMRRR 437 (457)
T ss_pred HHHHHHHH
Confidence 88888875
No 83
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=28.54 E-value=62 Score=34.21 Aligned_cols=80 Identities=21% Similarity=0.373 Sum_probs=46.7
Q ss_pred ccchhhccc--Cce------eccCCCCcCCCCCCCCchHHHHHhhhc-cceeEeecc--ceeeEeecceeeeeecCCCcc
Q psy10828 62 AAGEIFQKK--KAI------ISSVSPQKRGAPKSAGPVAVCHSALWW-AKEISFPQA--GLVCKLNTRCSIIAACNPKGH 130 (245)
Q Consensus 62 ~aGa~vLa~--~Gv------ide~~~~k~~~~k~~~~~~~l~EaM~E-qqtIsiaKa--g~~~~l~ar~sviAa~NP~g~ 130 (245)
=||-++.+= -|+ |||.| ||+.+-..|.-.||.|++ . -|.-++.=- .+...| +..-|+|+||..
T Consensus 403 mPGrIiQ~mkka~~~NPv~LLDEID--Km~ss~rGDPaSALLEVL-DPEQN~~F~DhYLev~yDL-S~VmFiaTANsl-- 476 (782)
T COG0466 403 MPGKIIQGMKKAGVKNPVFLLDEID--KMGSSFRGDPASALLEVL-DPEQNNTFSDHYLEVPYDL-SKVMFIATANSL-- 476 (782)
T ss_pred CChHHHHHHHHhCCcCCeEEeechh--hccCCCCCChHHHHHhhc-CHhhcCchhhccccCccch-hheEEEeecCcc--
Confidence 377777543 333 67776 554321123578999998 4 244333210 011111 356778888765
Q ss_pred cCCCCChhhhccCccCccCccceeEEe
Q psy10828 131 YDPNIPISVNIAIASPLLSRFDLVLVL 157 (245)
Q Consensus 131 ~~~~~~~~~~i~l~~~LLsRFDLi~~l 157 (245)
-.||.|||+|-..|=+-
T Consensus 477 ----------~tIP~PLlDRMEiI~ls 493 (782)
T COG0466 477 ----------DTIPAPLLDRMEVIRLS 493 (782)
T ss_pred ----------ccCChHHhcceeeeeec
Confidence 14899999999987663
No 84
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=27.68 E-value=31 Score=28.16 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=15.9
Q ss_pred ccceeeEEEeCCccCCCCC
Q psy10828 18 ERNTSKTVTLGGTRTGPDE 36 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ 36 (245)
|||+.|+++||-+..|++-
T Consensus 1 ~~~~~kv~~vG~~~vGKTs 19 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSA 19 (169)
T ss_pred CCeEEEEEEECCCCCcHHH
Confidence 7999999999987777654
No 85
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=26.32 E-value=73 Score=29.01 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=41.1
Q ss_pred chHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEecCCCChhhhhh
Q psy10828 90 PVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKM 168 (245)
Q Consensus 90 ~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ 168 (245)
..+.|++.| +++-.==-+ ...-.-=-+++++|||||- |+. .+++-|++.|-++.+ +.++.+.-..
T Consensus 122 ~iElLRQ~i-~~~g~yd~~-~~~~~~i~~i~~vaa~~p~~Gr~----------~is~R~~r~f~i~~~--~~p~~~sl~~ 187 (272)
T PF12775_consen 122 PIELLRQLI-DYGGFYDRK-KLEWKSIEDIQFVAAMNPTGGRN----------PISPRFLRHFNILNI--PYPSDESLNT 187 (272)
T ss_dssp HHHHHHHHH-HCSEEECTT-TTEEEEECSEEEEEEESSTTT------------SHHHHHHTTEEEEE------TCCHHHH
T ss_pred HHHHHHHHH-HhcCcccCC-CcEEEEEeeeEEEEecCCCCCCC----------CCChHHhhheEEEEe--cCCChHHHHH
Confidence 468899999 887542211 1222222468999999997 652 367888888876554 3444443344
Q ss_pred hhhhhhc
Q psy10828 169 VSNYILF 175 (245)
Q Consensus 169 ia~hIl~ 175 (245)
|=.-++.
T Consensus 188 If~~il~ 194 (272)
T PF12775_consen 188 IFSSILQ 194 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444444
No 86
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=23.99 E-value=2.9e+02 Score=25.40 Aligned_cols=106 Identities=17% Similarity=0.025 Sum_probs=63.1
Q ss_pred eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC----cccCCCCC-------hhhhcc
Q psy10828 74 ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK----GHYDPNIP-------ISVNIA 142 (245)
Q Consensus 74 ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~----g~~~~~~~-------~~~~i~ 142 (245)
||+|.|... +.....|..+| | |-...-|.++-|.|++|=. ..+..+.. ..+.+.
T Consensus 112 ~DDLsFe~~-----d~~yk~LKs~L-e---------Ggle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~e 176 (249)
T PF05673_consen 112 CDDLSFEEG-----DTEYKALKSVL-E---------GGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIE 176 (249)
T ss_pred ecCCCCCCC-----cHHHHHHHHHh-c---------CccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHH
Confidence 788887632 33567787777 6 2234458999999999932 33332221 123333
Q ss_pred CccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCC-HHHHHHHHHHhhc
Q psy10828 143 IASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWD-VEKLQAYFYLIKG 204 (245)
Q Consensus 143 l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~-~e~LrkYIayAR~ 204 (245)
=.-+|-+||.|.+.... ++.+.=..|.+|.+..... .++ .++-++=+.||..
T Consensus 177 EklSLsDRFGL~l~F~~-~~q~~YL~IV~~~~~~~g~---------~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 177 EKLSLSDRFGLWLSFYP-PDQEEYLAIVRHYAERYGL---------ELDEEELRQEALQWALR 229 (249)
T ss_pred HHHhHHHhCCcEEEecC-CCHHHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHHHH
Confidence 34577899999887654 4444444567777654422 233 3455666777753
No 87
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=23.49 E-value=1.6e+02 Score=31.38 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=88.2
Q ss_pred ccccceecccccccccccceeeEEEeCCccCCCCCC--------------CCCC--------CcccccccCcccceEEEE
Q psy10828 2 SDLVKYSRVGKFSADAERNTSKTVTLGGTRTGPDEP--------------PAGP--------GAVSKARGPQFGLIELEI 59 (245)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~--------~~~a~~~~~~~g~~e~~i 59 (245)
++-+|-+|.|-- |.-|=....+|+|=+=+|+||- .+-. +-+|.....-.|-.-+.
T Consensus 504 s~aIrraRaGL~--dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGye- 580 (786)
T COG0542 504 SDAIRRARAGLG--DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYE- 580 (786)
T ss_pred HHHHHHHhcCCC--CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceec-
Confidence 344566777743 3334444666788777777761 0000 11223333333322233
Q ss_pred ecccchhhcccCc----e--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cc-
Q psy10828 60 FSAAGEIFQKKKA----I--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GH- 130 (245)
Q Consensus 60 ~~~aGa~vLa~~G----v--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~- 130 (245)
|+|.+.-|-+. | +||++ |-. +..+.|.++| +.++++=+++- .+. --+|-||-++|-- ..
T Consensus 581 --eGG~LTEaVRr~PySViLlDEIE-------KAHpdV~nilLQVl-DdGrLTD~~Gr-~Vd-FrNtiIImTSN~Gs~~i 648 (786)
T COG0542 581 --EGGQLTEAVRRKPYSVILLDEIE-------KAHPDVFNLLLQVL-DDGRLTDGQGR-TVD-FRNTIIIMTSNAGSEEI 648 (786)
T ss_pred --cccchhHhhhcCCCeEEEechhh-------hcCHHHHHHHHHHh-cCCeeecCCCC-EEe-cceeEEEEecccchHHH
Confidence 67766665443 3 78888 333 4689999999 99999988764 222 2368888999943 21
Q ss_pred ---cCC-----CCChhh------hccCccCccCccceeEEecCCCChhhhhhhhhhhh
Q psy10828 131 ---YDP-----NIPISV------NIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYIL 174 (245)
Q Consensus 131 ---~~~-----~~~~~~------~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl 174 (245)
... .....+ .-.++|.||.|+|-|++.. .-+.+.-..|.+..|
T Consensus 649 ~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~-~L~~~~l~~Iv~~~L 705 (786)
T COG0542 649 LRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFN-PLSKEVLERIVDLQL 705 (786)
T ss_pred HhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEecc-CCCHHHHHHHHHHHH
Confidence 110 111112 2279999999999766543 334444444444444
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=23.27 E-value=1.7e+02 Score=30.39 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=55.5
Q ss_pred ceeeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHH
Q psy10828 118 RCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQA 197 (245)
Q Consensus 118 r~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~Lrk 197 (245)
...+|+|+|+.. | ...+...++|.+||..| -...++.+.-..|-+.+...... ...-.++-+-+..
T Consensus 311 ~i~~IgaTt~~e-~------~~~~~~d~al~rRf~~i--~v~~p~~~~~~~il~~~~~~~e~-----~~~v~i~~~al~~ 376 (731)
T TIGR02639 311 KLRCIGSTTYEE-Y------KNHFEKDRALSRRFQKI--DVGEPSIEETVKILKGLKEKYEE-----FHHVKYSDEALEA 376 (731)
T ss_pred CeEEEEecCHHH-H------HHHhhhhHHHHHhCceE--EeCCCCHHHHHHHHHHHHHHHHh-----ccCcccCHHHHHH
Confidence 345899999862 1 12234568999999843 33445544444443433332110 0123578888888
Q ss_pred HHHHhhccCC--CCCHHHHHHHHHHHHHHH
Q psy10828 198 YFYLIKGLRP--QMTLEANRILTRYYQAQR 225 (245)
Q Consensus 198 YIayAR~~~P--~LS~EA~~~I~~yY~~lR 225 (245)
-+.++.++.| .|++.|-++|.+.....|
T Consensus 377 ~~~ls~ryi~~r~~P~kai~lld~a~a~~~ 406 (731)
T TIGR02639 377 AVELSARYINDRFLPDKAIDVIDEAGASFR 406 (731)
T ss_pred HHHhhhcccccccCCHHHHHHHHHhhhhhh
Confidence 8888876433 378889998887655333
No 89
>PRK13342 recombination factor protein RarA; Reviewed
Probab=21.31 E-value=3.3e+02 Score=26.02 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=37.7
Q ss_pred cCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeec--CCCcccCCCCChhhhccCc
Q psy10828 70 KKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAAC--NPKGHYDPNIPISVNIAIA 144 (245)
Q Consensus 70 ~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~--NP~g~~~~~~~~~~~i~l~ 144 (245)
.+++ |||.+. +. ..+++|...| |.+++ .+++++ ||. ..+.
T Consensus 92 ~~~vL~IDEi~~-------l~~~~q~~LL~~l-e~~~i---------------ilI~att~n~~------------~~l~ 136 (413)
T PRK13342 92 RRTILFIDEIHR-------FNKAQQDALLPHV-EDGTI---------------TLIGATTENPS------------FEVN 136 (413)
T ss_pred CceEEEEechhh-------hCHHHHHHHHHHh-hcCcE---------------EEEEeCCCChh------------hhcc
Confidence 3455 677762 22 3678899999 87554 344443 332 2356
Q ss_pred cCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 145 SPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 145 ~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
++|+||+. ++.+ ...+.+.-..+..+++.
T Consensus 137 ~aL~SR~~-~~~~-~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 137 PALLSRAQ-VFEL-KPLSEEDIEQLLKRALE 165 (413)
T ss_pred HHHhccce-eeEe-CCCCHHHHHHHHHHHHH
Confidence 89999993 3333 34443333334444443
Done!