Query psy10828
Match_columns 245
No_of_seqs 181 out of 1168
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 19:32:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f8t_A Predicted ATPase involv 100.0 2.6E-34 8.8E-39 277.3 8.9 174 40-245 276-457 (506)
2 3f9v_A Minichromosome maintena 100.0 3E-32 1E-36 267.5 8.0 215 18-245 324-561 (595)
3 1g8p_A Magnesium-chelatase 38 98.9 7.3E-10 2.5E-14 98.5 5.5 142 62-223 136-282 (350)
4 2r44_A Uncharacterized protein 98.8 4.7E-08 1.6E-12 87.1 12.4 164 54-245 98-271 (331)
5 3nbx_X ATPase RAVA; AAA+ ATPas 98.6 4.3E-07 1.5E-11 87.7 12.7 147 70-245 109-260 (500)
6 3k1j_A LON protease, ATP-depen 98.5 2.8E-08 9.7E-13 97.0 3.7 137 62-245 193-349 (604)
7 2bjv_A PSP operon transcriptio 96.9 0.0012 4.2E-08 56.5 6.0 79 62-156 92-174 (265)
8 1ojl_A Transcriptional regulat 96.9 0.0014 4.9E-08 58.4 6.5 79 62-156 88-170 (304)
9 1ofh_A ATP-dependent HSL prote 96.7 0.0036 1.2E-07 53.9 7.2 102 91-223 145-249 (310)
10 4fcw_A Chaperone protein CLPB; 96.4 0.0058 2E-07 52.9 7.0 100 65-175 114-230 (311)
11 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0027 9.1E-08 62.9 4.3 101 64-175 551-667 (758)
12 3pfi_A Holliday junction ATP-d 96.1 0.0089 3E-07 52.7 6.5 73 68-160 104-184 (338)
13 3hws_A ATP-dependent CLP prote 96.0 0.0017 5.8E-08 58.6 1.4 37 90-127 146-182 (363)
14 1um8_A ATP-dependent CLP prote 96.0 0.0082 2.8E-07 54.2 5.9 60 64-127 131-203 (376)
15 1hqc_A RUVB; extended AAA-ATPa 95.2 0.22 7.5E-06 43.1 11.8 73 68-160 88-168 (324)
16 3syl_A Protein CBBX; photosynt 95.2 0.015 5E-07 50.4 4.2 90 65-176 125-219 (309)
17 3m6a_A ATP-dependent protease 95.0 0.019 6.5E-07 55.3 4.6 150 70-244 175-338 (543)
18 1ny5_A Transcriptional regulat 94.8 0.0086 3E-07 55.1 1.7 57 62-128 223-282 (387)
19 3dzd_A Transcriptional regulat 93.9 0.055 1.9E-06 49.5 4.9 78 62-155 214-295 (368)
20 1g41_A Heat shock protein HSLU 93.8 0.13 4.4E-06 48.9 7.3 130 64-224 243-384 (444)
21 4akg_A Glutathione S-transfera 91.8 0.16 5.5E-06 57.8 5.7 74 90-174 1358-1431(2695)
22 3pxi_A Negative regulator of g 87.8 0.13 4.4E-06 51.0 0.8 99 65-175 574-676 (758)
23 1qvr_A CLPB protein; coiled co 85.1 0.39 1.3E-05 48.4 2.6 97 68-175 658-771 (854)
24 3pxg_A Negative regulator of g 84.4 4.6 0.00016 37.7 9.5 111 118-244 291-403 (468)
25 3pvs_A Replication-associated 78.3 5.9 0.0002 37.0 7.9 134 69-244 105-241 (447)
26 4akg_A Glutathione S-transfera 69.3 12 0.00041 43.0 8.6 50 94-152 724-773 (2695)
27 3vkg_A Dynein heavy chain, cyt 69.1 6.8 0.00023 45.7 6.7 71 90-171 1396-1466(3245)
28 3uk6_A RUVB-like 2; hexameric 67.0 12 0.00042 32.5 6.7 51 142-203 242-292 (368)
29 2c9o_A RUVB-like 1; hexameric 64.7 12 0.00043 34.4 6.6 61 72-154 297-361 (456)
30 3co5_A Putative two-component 63.6 2.2 7.4E-05 32.9 1.0 47 63-128 68-116 (143)
31 2chg_A Replication factor C sm 62.9 19 0.00065 27.9 6.5 51 70-152 102-154 (226)
32 3eie_A Vacuolar protein sortin 53.3 24 0.00082 30.6 6.1 46 117-175 153-198 (322)
33 3u61_B DNA polymerase accessor 53.0 18 0.00063 31.0 5.2 62 70-164 105-168 (324)
34 2chq_A Replication factor C sm 50.4 26 0.00089 29.4 5.7 37 90-152 118-154 (319)
35 1sxj_D Activator 1 41 kDa subu 48.4 34 0.0012 29.2 6.2 90 70-203 133-225 (353)
36 1in4_A RUVB, holliday junction 46.5 46 0.0016 29.0 6.9 76 69-164 101-183 (334)
37 3d8b_A Fidgetin-like protein 1 42.6 74 0.0025 28.0 7.7 48 115-175 218-265 (357)
38 3pxi_A Negative regulator of g 40.0 1.3E+02 0.0043 29.5 9.5 94 118-225 291-386 (758)
39 1iqp_A RFCS; clamp loader, ext 40.0 47 0.0016 27.9 5.7 51 69-152 109-162 (327)
40 3vfd_A Spastin; ATPase, microt 39.7 64 0.0022 28.7 6.8 53 111-176 245-297 (389)
41 3t15_A Ribulose bisphosphate c 38.1 26 0.00087 30.3 3.8 69 91-175 129-199 (293)
42 3n70_A Transport activator; si 35.3 10 0.00035 29.0 0.6 46 62-128 68-116 (145)
43 2jmf_B Neurogenic locus notch 31.6 17 0.00059 20.8 1.0 13 27-39 3-15 (26)
44 2zan_A Vacuolar protein sortin 23.2 48 0.0016 30.4 3.0 47 116-175 269-315 (444)
45 1r6b_X CLPA protein; AAA+, N-t 22.9 2.4E+02 0.0082 27.3 8.1 95 118-226 315-411 (758)
46 2v1u_A Cell division control p 21.8 1.4E+02 0.0048 25.3 5.6 51 116-175 165-215 (387)
47 2qp9_X Vacuolar protein sortin 20.1 55 0.0019 29.0 2.7 47 116-175 185-231 (355)
No 1
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=2.6e-34 Score=277.31 Aligned_cols=174 Identities=22% Similarity=0.268 Sum_probs=138.3
Q ss_pred CCCcccccccCcccceEEEEecccchhhcccCceeccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecce
Q psy10828 40 GPGAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRC 119 (245)
Q Consensus 40 ~~~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~ 119 (245)
..|++++.+++ +| |.+ +||+++|||+|+|+.+++.++ ....+++||||| |+|+|+|+ |+ +||++|
T Consensus 276 ~~gLt~s~r~~---tG-~~~--~~G~l~LAdgGvl~lDEIn~~----~~~~qsaLlEaM-Ee~~VtI~--G~--~lparf 340 (506)
T 3f8t_A 276 LTDLTAVLKED---RG-WAL--RAGAAVLADGGILAVDHLEGA----PEPHRWALMEAM-DKGTVTVD--GI--ALNARC 340 (506)
T ss_dssp HHHHSEEEEES---SS-EEE--EECHHHHTTTSEEEEECCTTC----CHHHHHHHHHHH-HHSEEEET--TE--EEECCC
T ss_pred ccCceEEEEcC---CC-ccc--CCCeeEEcCCCeeehHhhhhC----CHHHHHHHHHHH-hCCcEEEC--CE--EcCCCe
Confidence 44677774444 66 999 999999999999665555554 124799999999 99999999 87 999999
Q ss_pred eeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHH
Q psy10828 120 SIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYF 199 (245)
Q Consensus 120 sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYI 199 (245)
+||||+||+++|+++++. +|+.||++|||||||++++.|.++.+.|.. .....++.++|++||
T Consensus 341 ~VIAA~NP~~~yd~~~s~-~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e----------------~~~~~ls~e~L~~yi 403 (506)
T 3f8t_A 341 AVLAAINPGEQWPSDPPI-ARIDLDQDFLSHFDLIAFLGVDPRPGEPEE----------------QDTEVPSYTLLRRYL 403 (506)
T ss_dssp EEEEEECCCC--CCSCGG-GGCCSCHHHHTTCSEEEETTC------------------------------CCHHHHHHHH
T ss_pred EEEEEeCcccccCCCCCc-cccCCChHHhhheeeEEEecCCCChhHhhc----------------ccCCCCCHHHHHHHH
Confidence 999999999888988888 999999999999999999999999998842 123579999999999
Q ss_pred HHhh--ccCCCCCHHHHHHHHHHHHHHHhhcC------CCCcccchhhhhhhcC
Q psy10828 200 YLIK--GLRPQMTLEANRILTRYYQAQRKADM------RNAARTTVRLLESLIR 245 (245)
Q Consensus 200 ayAR--~~~P~LS~EA~~~I~~yY~~lR~~~~------~~~~~iTvRqLESLIR 245 (245)
+||| +++|.+++++.+.|.++|..+|+... ....++|+|+||+|||
T Consensus 404 ~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiR 457 (506)
T 3f8t_A 404 LYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVER 457 (506)
T ss_dssp HHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHH
T ss_pred HHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHH
Confidence 9999 58999999999999999999997421 1457899999999997
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.97 E-value=3e-32 Score=267.53 Aligned_cols=215 Identities=30% Similarity=0.452 Sum_probs=184.2
Q ss_pred ccceeeEEEeCCccCCCCC--------C----------CCCCCcccccccCcccceEEEEecccchhhcccCceeccCCC
Q psy10828 18 ERNTSKTVTLGGTRTGPDE--------P----------PAGPGAVSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSP 79 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~--------~----------~~~~~~~a~~~~~~~g~~e~~i~~~aGa~vLa~~Gvide~~~ 79 (245)
-|..++++++|-+=||++. . -...++++...++. .+++|.. ++|++++|++|+|+.+++
T Consensus 324 ~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~-~~g~~~~--~~G~l~~A~~gil~IDEi 400 (595)
T 3f9v_A 324 IRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREK-GTGEYYL--EAGALVLADGGIAVIDEI 400 (595)
T ss_dssp ECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGG-GTSSCSE--EECHHHHHSSSEECCTTT
T ss_pred cCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecc-ccccccc--cCCeeEecCCCcEEeehh
Confidence 4556689999999888876 1 12346777665544 4567888 999999999999655555
Q ss_pred CcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEec
Q psy10828 80 QKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLL 158 (245)
Q Consensus 80 ~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~ 158 (245)
+++ ..+.+.+||++| |+|+++|.|+|...+++++|+||||+||. |+|+..++..+|+.|+++|||||||++++.
T Consensus 401 d~l----~~~~q~~Ll~~l-e~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~ 475 (595)
T 3f9v_A 401 DKM----RDEDRVAIHEAM-EQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILK 475 (595)
T ss_dssp TCC----CSHHHHHHHHHH-HSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEEC
T ss_pred hhC----CHhHhhhhHHHH-hCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeC
Confidence 554 124799999999 99999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHHHhhcCCC---Ccc
Q psy10828 159 DSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKG-LRPQMTLEANRILTRYYQAQRKADMRN---AAR 234 (245)
Q Consensus 159 D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR~-~~P~LS~EA~~~I~~yY~~lR~~~~~~---~~~ 234 (245)
|.++.+ |..|++|++..|... .....++.++|++|++|||+ ++|.|+++|.+.|.+||..+|+..... ..+
T Consensus 476 ~~~~~e-~~~i~~~il~~~~~~----~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~ 550 (595)
T 3f9v_A 476 DQPGEQ-DRELANYILDVHSGK----STKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPIL 550 (595)
T ss_dssp CTTHHH-HHHHHHHHHTTTCCC----SSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBC
T ss_pred CCCCHH-HHHHHHHHHHHhhcc----ccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 999999 999999999988653 23467899999999999995 899999999999999999999876533 579
Q ss_pred cchhhhhhhcC
Q psy10828 235 TTVRLLESLIR 245 (245)
Q Consensus 235 iTvRqLESLIR 245 (245)
+|+|+||+|||
T Consensus 551 ~s~R~l~~lir 561 (595)
T 3f9v_A 551 ITPRQLEALIR 561 (595)
T ss_dssp SSTTTTTHHHH
T ss_pred ccHHHHHHHHH
Confidence 99999999986
No 3
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.93 E-value=7.3e-10 Score=98.45 Aligned_cols=142 Identities=13% Similarity=0.056 Sum_probs=105.1
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChh
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPIS 138 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~ 138 (245)
.+|.+..|++|+ |||++ +. ....+..|+++| |.+.+.+.+.|.....+.++.++|++||. +
T Consensus 136 ~~g~~~~a~~~vl~iDEi~--~l----~~~~~~~Ll~~l-e~~~~~~~~~g~~~~~~~~~~li~~~n~~~~--------- 199 (350)
T 1g8p_A 136 EPGLLARANRGYLYIDECN--LL----EDHIVDLLLDVA-QSGENVVERDGLSIRHPARFVLVGSGNPEEG--------- 199 (350)
T ss_dssp ECCHHHHHTTEEEEETTGG--GS----CHHHHHHHHHHH-HHSEEEECCTTCCEEEECCEEEEEEECSCSC---------
T ss_pred cCceeeecCCCEEEEeChh--hC----CHHHHHHHHHHH-hcCceEEEecceEEeeCCceEEEEEeCCCCC---------
Confidence 678888999999 66666 22 113689999999 99999999999999999999999999996 3
Q ss_pred hhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhhc--cCCCCCHHHHHH
Q psy10828 139 VNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKG--LRPQMTLEANRI 216 (245)
Q Consensus 139 ~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR~--~~P~LS~EA~~~ 216 (245)
.++++|++||++.+.+....+.+....|..+.+.....+.. .......+...++++|.++|. -...+++++.+.
T Consensus 200 ---~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~ 275 (350)
T 1g8p_A 200 ---DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKA-FLEEWRPKDMDIRNQILEARERLPKVEAPNTALYD 275 (350)
T ss_dssp ---CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHH
T ss_pred ---CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchh-hccccccchHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 36689999999988877666666666777666543211000 000011245678899998874 355899999999
Q ss_pred HHHHHHH
Q psy10828 217 LTRYYQA 223 (245)
Q Consensus 217 I~~yY~~ 223 (245)
|.+++..
T Consensus 276 l~~~~~~ 282 (350)
T 1g8p_A 276 CAALCIA 282 (350)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 4
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.79 E-value=4.7e-08 Score=87.06 Aligned_cols=164 Identities=12% Similarity=0.083 Sum_probs=110.4
Q ss_pred ceEEEEecccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCccc
Q psy10828 54 LIELEIFSAAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHY 131 (245)
Q Consensus 54 ~~e~~i~~~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~ 131 (245)
.+.|.+ .+|.+ .+|+ |||++. . ....+.+|+++| |++.+++ .|....++.++.|+|++||....
T Consensus 98 ~~~~~~--~~g~l---~~~vl~iDEi~~--~----~~~~~~~Ll~~l-~~~~~~~--~g~~~~~~~~~~viat~np~~~~ 163 (331)
T 2r44_A 98 KGNFEV--KKGPV---FSNFILADEVNR--S----PAKVQSALLECM-QEKQVTI--GDTTYPLDNPFLVLATQNPVEQE 163 (331)
T ss_dssp TTEEEE--EECTT---CSSEEEEETGGG--S----CHHHHHHHHHHH-HHSEEEE--TTEEEECCSSCEEEEEECTTCCS
T ss_pred CCceEe--ccCcc---cccEEEEEcccc--C----CHHHHHHHHHHH-hcCceee--CCEEEECCCCEEEEEecCCCccc
Confidence 345655 66766 3578 666662 2 123689999999 9999988 58888899999999999998321
Q ss_pred CCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCH
Q psy10828 132 DPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTL 211 (245)
Q Consensus 132 ~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR~~~P~LS~ 211 (245)
. ...++++|+|||++.+.+. .++.+.-..+..+.+..... ......++.+.+...-.+++ +..+++
T Consensus 164 ~-------~~~l~~~l~~Rf~~~i~i~-~p~~~~~~~il~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~--~v~~~~ 229 (331)
T 2r44_A 164 G-------TYPLPEAQVDRFMMKIHLT-YLDKESELEVMRRVSNMNFN----YQVQKIVSKNDVLEIRNEIN--KVTISE 229 (331)
T ss_dssp C-------CCCCCHHHHTTSSEEEECC-CCCHHHHHHHHHHHHCTTCC----CCCCCCSCHHHHHHHHHHHH--TCBCCH
T ss_pred C-------cccCCHHHHhheeEEEEcC-CCCHHHHHHHHHhccccCcc----hhccccCCHHHHHHHHHHhc--cCCCCH
Confidence 1 1258899999998876654 44554444444444432211 11234566666666555554 457899
Q ss_pred HHHHHHHHHHHHHHhhcCC--------CCcccchhhhhhhcC
Q psy10828 212 EANRILTRYYQAQRKADMR--------NAARTTVRLLESLIR 245 (245)
Q Consensus 212 EA~~~I~~yY~~lR~~~~~--------~~~~iTvRqLESLIR 245 (245)
++.+.|.+++...|..... ....+++|.+++++|
T Consensus 230 ~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~ 271 (331)
T 2r44_A 230 SLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNR 271 (331)
T ss_dssp HHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHH
Confidence 9999999999988876420 123578999888764
No 5
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.57 E-value=4.3e-07 Score=87.72 Aligned_cols=147 Identities=16% Similarity=0.117 Sum_probs=97.8
Q ss_pred cCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccC
Q psy10828 70 KKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASP 146 (245)
Q Consensus 70 ~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~ 146 (245)
..+| |||++ +. ....+.+|+++| |.+.+++ .|....++.++ +++|+||. . ...+.++
T Consensus 109 ~~~IL~IDEI~--r~----~~~~q~~LL~~l-ee~~v~i--~G~~~~~~~~~-iI~ATN~lpe----------~~~~~~a 168 (500)
T 3nbx_X 109 EAEIVFLDEIW--KA----GPAILNTLLTAI-NERQFRN--GAHVEKIPMRL-LVAASNELPE----------ADSSLEA 168 (500)
T ss_dssp GCSEEEEESGG--GC----CHHHHHHHHHHH-HSSEEEC--SSSEEECCCCE-EEEEESSCCC----------TTCTTHH
T ss_pred cceeeeHHhHh--hh----cHHHHHHHHHHH-HHHhccC--CCCcCCcchhh-hhhccccCCC----------ccccHHH
Confidence 3445 66665 22 124689999999 9999988 68888999997 67888865 2 2234579
Q ss_pred ccCccceeEEecCCCChhhh-hhhhhhhhccCCCCC-CCCCCCCCCCHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHH
Q psy10828 147 LLSRFDLVLVLLDSKSEQWD-KMVSNYILFGKRLGP-SSNQATSLWDVEKLQAYFYLIKGLRPQMTLEANRILTRYYQAQ 224 (245)
Q Consensus 147 LLsRFDLi~~l~D~~~~~~D-~~ia~hIl~~~~~~~-~~~~~~~~l~~e~LrkYIayAR~~~P~LS~EA~~~I~~yY~~l 224 (245)
|++||++.+.+ +.++...+ .. |+..+.... ........++.+.+.++..++++ ..+++++.+.|.+.+..+
T Consensus 169 LldRF~~~i~v-~~p~~~ee~~~----IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~--v~v~d~v~e~i~~l~~~l 241 (500)
T 3nbx_X 169 LYDRMLIRLWL-DKVQDKANFRS----MLTSQQDENDNPVPDALQVTDEEYERWQKEIGE--ITLPDHVFELIFMLRQQL 241 (500)
T ss_dssp HHTTCCEEEEC-CSCCCHHHHHH----HHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTT--CBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhhhhhhHHH----HHhcccccCCCCCCccceecHHHHHHHHhcCCc--ccCchHHHHHHHHHHHHh
Confidence 99999554444 55554332 23 333221110 00112456889999999988876 457888888888888776
Q ss_pred HhhcCCCCcccchhhhhhhcC
Q psy10828 225 RKADMRNAARTTVRLLESLIR 245 (245)
Q Consensus 225 R~~~~~~~~~iTvRqLESLIR 245 (245)
|... ....++.|.+++++|
T Consensus 242 r~~r--~~~~iS~R~~~~llr 260 (500)
T 3nbx_X 242 DKLP--DAPYVSDRRWKKAIR 260 (500)
T ss_dssp HHCS--SSCCCCHHHHHHHHH
T ss_pred hcCC--CCCccchhHHHHHHH
Confidence 6543 234678999998875
No 6
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.55 E-value=2.8e-08 Score=96.99 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=97.3
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccc-----e---eeEeecceeeeeecCCC-cc
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAG-----L---VCKLNTRCSIIAACNPK-GH 130 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag-----~---~~~l~ar~sviAa~NP~-g~ 130 (245)
++|.+..|++|+ |||.+ ++ ....+..|+++| |++++.+.-.+ . ...+|+++.||+|+||. .+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~--~l----~~~~q~~Ll~~L-e~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~ 265 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIA--TL----SLKMQQSLLTAM-QEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD 265 (604)
T ss_dssp ECCHHHHTTTSEEEETTGG--GS----CHHHHHHHHHHH-HHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHH
T ss_pred cCceeeecCCCEEEEechh--hC----CHHHHHHHHHHH-HcCcEEecccccccccccCCCCccceeEEEEEecCHHHHh
Confidence 799999999999 67666 22 113689999999 99999886221 1 55688999999999986 21
Q ss_pred cCCCCChhhhccCccCccCccce---eEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhhc---
Q psy10828 131 YDPNIPISVNIAIASPLLSRFDL---VLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKG--- 204 (245)
Q Consensus 131 ~~~~~~~~~~i~l~~~LLsRFDL---i~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR~--- 204 (245)
.++++|++||++ .+.+.+. ..-+.+.++.|+.+..+
T Consensus 266 -----------~l~~~l~~R~~v~~i~i~l~~~---------------------------~~~~~~~~~~~l~~~~~~~~ 307 (604)
T 3k1j_A 266 -----------KMHPALRSRIRGYGYEVYMRTT---------------------------MPDTIENRRKLVQFVAQEVK 307 (604)
T ss_dssp -----------HSCHHHHHHHHHHSEEEECCSE---------------------------EECCHHHHHHHHHHHHHHHH
T ss_pred -----------hcCHHHHHHhhccceEeecccc---------------------------ccCCHHHHHHHHHHHHHHHh
Confidence 367999999984 3322111 11234566667666542
Q ss_pred ---cCCCCCHHHHHHHHHHHHHHHhhcCCCCcccchhhhhhhcC
Q psy10828 205 ---LRPQMTLEANRILTRYYQAQRKADMRNAARTTVRLLESLIR 245 (245)
Q Consensus 205 ---~~P~LS~EA~~~I~~yY~~lR~~~~~~~~~iTvRqLESLIR 245 (245)
..|.++++|.+.|.+||. |....++..++++|+|++|+|
T Consensus 308 ~~~~~~~ls~eAl~~Li~~~~--r~~g~r~~l~~~~R~l~~llr 349 (604)
T 3k1j_A 308 RDGKIPHFTKEAVEEIVREAQ--KRAGRKGHLTLRLRDLGGIVR 349 (604)
T ss_dssp HHCSSCCBBHHHHHHHHHHHH--HTTCSTTEEECCHHHHHHHHH
T ss_pred hccCcccCCHHHHHHHHHHHh--hhhccccccccCHHHHHHHHH
Confidence 348899999999999985 434444456788999998875
No 7
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.92 E-value=0.0012 Score=56.50 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=55.4
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCCh
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPI 137 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~ 137 (245)
..|.+-.|++|+ |||++ + +. +.+..|...| |++.+ .+.|.....+.++.||+|+|+. ...
T Consensus 92 ~~~~l~~a~~~~l~lDEi~--~-----l~~~~q~~Ll~~l-~~~~~--~~~g~~~~~~~~~~iI~atn~~~~~~------ 155 (265)
T 2bjv_A 92 HPGRFERADGGTLFLDELA--T-----APMMVQEKLLRVI-EYGEL--ERVGGSQPLQVNVRLVCATNADLPAM------ 155 (265)
T ss_dssp CCCHHHHTTTSEEEEESGG--G-----SCHHHHHHHHHHH-HHCEE--CCCCC--CEECCCEEEEEESSCHHHH------
T ss_pred ccchhhhcCCcEEEEechH--h-----cCHHHHHHHHHHH-HhCCe--ecCCCcccccCCeEEEEecCcCHHHH------
Confidence 466677789999 67766 2 23 3678899999 98875 4667666778899999999985 221
Q ss_pred hhhccCccCccCccceeEE
Q psy10828 138 SVNIAIASPLLSRFDLVLV 156 (245)
Q Consensus 138 ~~~i~l~~~LLsRFDLi~~ 156 (245)
.....+.+.|++||+.+.+
T Consensus 156 ~~~~~~~~~L~~Rl~~~~i 174 (265)
T 2bjv_A 156 VNEGTFRADLLDALAFDVV 174 (265)
T ss_dssp HHHTSSCHHHHHHHCSEEE
T ss_pred HHcCCccHHHHHhhcCcEE
Confidence 1233567899999986443
No 8
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.90 E-value=0.0014 Score=58.39 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=58.0
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCCh
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPI 137 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~ 137 (245)
..|.+-.|++|+ |||++. +. ..+..|..+| |.+.+ .+.|-....+..+.||+|+|+. .. .
T Consensus 88 ~~g~~~~a~~g~L~LDEi~~-------l~~~~q~~Ll~~l-~~~~~--~~~g~~~~~~~~~riI~atn~~l~~------~ 151 (304)
T 1ojl_A 88 REGRFVEADGGTLFLDEIGD-------ISPLMQVRLLRAI-QEREV--QRVGSNQTISVDVRLIAATHRDLAE------E 151 (304)
T ss_dssp CCCHHHHHTTSEEEEESCTT-------CCHHHHHHHHHHH-HSSBC--CBTTBCCCCBCCCEEEEEESSCHHH------H
T ss_pred hcCHHHhcCCCEEEEecccc-------CCHHHHHHHHHHH-hcCEe--eecCCcccccCCeEEEEecCccHHH------H
Confidence 678888999999 777772 33 3678899999 88765 5677777788999999999975 21 1
Q ss_pred hhhccCccCccCccceeEE
Q psy10828 138 SVNIAIASPLLSRFDLVLV 156 (245)
Q Consensus 138 ~~~i~l~~~LLsRFDLi~~ 156 (245)
.....+.+.|++||+.+-+
T Consensus 152 v~~g~fr~~L~~Rl~~~~i 170 (304)
T 1ojl_A 152 VSAGRFRQDLYYRLNVVAI 170 (304)
T ss_dssp HHHTSSCHHHHHHHSSEEE
T ss_pred HHhCCcHHHHHhhcCeeEE
Confidence 2333566889999985544
No 9
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.69 E-value=0.0036 Score=53.89 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=61.4
Q ss_pred hHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhh
Q psy10828 91 VAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMV 169 (245)
Q Consensus 91 ~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~i 169 (245)
+..|.+.| |.+++.. +.| ..-+.++.|++++|+. .. ...+.++|++||++++.+. .++.+.-..
T Consensus 145 ~~~Ll~~l-e~~~~~~-~~~--~~~~~~~~~i~~~~~~~~~---------~~~l~~~l~~R~~~~i~~~-~~~~~~~~~- 209 (310)
T 1ofh_A 145 QRDLLPLV-EGSTVST-KHG--MVKTDHILFIASGAFQVAR---------PSDLIPELQGRLPIRVELT-ALSAADFER- 209 (310)
T ss_dssp HHHHHHHH-HCCEEEE-TTE--EEECTTCEEEEEECCSSSC---------GGGSCHHHHHTCCEEEECC-CCCHHHHHH-
T ss_pred HHHHHHHh-cCCeEec-ccc--cccCCcEEEEEcCCcccCC---------cccCCHHHHhhCCceEEcC-CcCHHHHHH-
Confidence 67888999 9887654 334 2235678889988764 11 1257789999999655553 444322222
Q ss_pred hhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHH
Q psy10828 170 SNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIK--GLRPQMTLEANRILTRYYQA 223 (245)
Q Consensus 170 a~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR--~~~P~LS~EA~~~I~~yY~~ 223 (245)
|++.+.. .++++|...++ ...+.+++++.+.|.+++-.
T Consensus 210 ---il~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 249 (310)
T 1ofh_A 210 ---ILTEPHA-------------SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFR 249 (310)
T ss_dssp ---HHHSSTT-------------CHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHH
T ss_pred ---HHHhhHH-------------HHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhh
Confidence 2221100 24555655554 35567888888888877643
No 10
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.45 E-value=0.0058 Score=52.93 Aligned_cols=100 Identities=12% Similarity=0.134 Sum_probs=63.8
Q ss_pred hhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC--------cccCC
Q psy10828 65 EIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK--------GHYDP 133 (245)
Q Consensus 65 a~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~--------g~~~~ 133 (245)
++-.+.+|+ |||++ ++. ..+..|.+.| |.+.+...+ |....+ .++.||+++|+. +....
T Consensus 114 ~~~~~~~~vl~lDEi~-------~l~~~~~~~Ll~~l-e~~~~~~~~-~~~~~~-~~~iiI~ttn~~~~~i~~~~~~~~~ 183 (311)
T 4fcw_A 114 AVRRRPYSVILFDAIE-------KAHPDVFNILLQML-DDGRLTDSH-GRTVDF-RNTVIIMTSNLGSPLILEGLQKGWP 183 (311)
T ss_dssp HHHHCSSEEEEEETGG-------GSCHHHHHHHHHHH-HHSEEECTT-SCEEEC-TTEEEEEEESTTHHHHHTTTTSCCC
T ss_pred HHHhCCCeEEEEeChh-------hcCHHHHHHHHHHH-hcCEEEcCC-CCEEEC-CCcEEEEecccCHHHHHhhhccccc
Confidence 344456788 77776 233 3689999999 999887433 333332 256699999983 11112
Q ss_pred CCChhh------hccCccCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 134 NIPISV------NIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 134 ~~~~~~------~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
...+.+ .-.+.++|++|||.++.+. .++.+.-..|+++.+.
T Consensus 184 ~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~-p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 184 YERIRDEVFKVLQQHFRPEFLNRLDEIVVFR-PLTKEQIRQIVEIQMS 230 (311)
T ss_dssp SSTHHHHTHHHHHHHSCHHHHTTCSEEEECC-CCCHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhCCHHHHhcCCeEEEeC-CCCHHHHHHHHHHHHH
Confidence 223333 3368899999999888764 4555555567777665
No 11
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.28 E-value=0.0027 Score=62.93 Aligned_cols=101 Identities=10% Similarity=0.171 Sum_probs=67.0
Q ss_pred chhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cc-------c-
Q psy10828 64 GEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GH-------Y- 131 (245)
Q Consensus 64 Ga~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~-------~- 131 (245)
+++-.+++|| +||++ + +. +.+..|.++| |.+.++..+ |....+ .++.||+++|+. .. |
T Consensus 551 ~~~~~~~~~vl~lDEi~--~-----~~~~~~~~Ll~~l-e~~~~~~~~-g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~ 620 (758)
T 1r6b_X 551 DAVIKHPHAVLLLDEIE--K-----AHPDVFNILLQVM-DNGTLTDNN-GRKADF-RNVVLVMTTNAGVRETERKSIGLI 620 (758)
T ss_dssp HHHHHCSSEEEEEETGG--G-----SCHHHHHHHHHHH-HHSEEEETT-TEEEEC-TTEEEEEEECSSCC----------
T ss_pred HHHHhCCCcEEEEeCcc--c-----cCHHHHHHHHHHh-cCcEEEcCC-CCEEec-CCeEEEEecCcchhhhhhcccCcc
Confidence 3444677888 67766 3 33 4689999999 999998754 776666 789999999984 11 1
Q ss_pred CC--CCChhhhc--cCccCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 132 DP--NIPISVNI--AIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 132 ~~--~~~~~~~i--~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
.. .....+.+ .++++|++|||.+ +.....+.+.-..|.++.+.
T Consensus 621 ~~~~~~~~~~~~~~~~~~~l~~R~~~~-i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 621 HQDNSTDAMEEIKKIFTPEFRNRLDNI-IWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp -------CHHHHHHHSCHHHHTTCSEE-EECCCCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcCHHHHhhCCcc-eeeCCCCHHHHHHHHHHHHH
Confidence 10 01112222 7899999999988 44556666655566666654
No 12
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.13 E-value=0.0089 Score=52.69 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=48.9
Q ss_pred cccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeecc------ceeeEeecceeeeeecCCCcccCCCCChhh
Q psy10828 68 QKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQA------GLVCKLNTRCSIIAACNPKGHYDPNIPISV 139 (245)
Q Consensus 68 La~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKa------g~~~~l~ar~sviAa~NP~g~~~~~~~~~~ 139 (245)
++++|+ |||++... ...+..|+.+| |.+.+.+.-+ .+...++ ++.+|+|+|..+.
T Consensus 104 ~~~~~vl~lDEi~~l~------~~~~~~Ll~~l-~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~~--------- 166 (338)
T 3pfi_A 104 LSEGDILFIDEIHRLS------PAIEEVLYPAM-EDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAGM--------- 166 (338)
T ss_dssp CCTTCEEEEETGGGCC------HHHHHHHHHHH-HTSCC---------CCCCCCCCC-CCEEEEEESCGGG---------
T ss_pred ccCCCEEEEechhhcC------HHHHHHHHHHH-HhccchhhcccCccccceecCCC-CeEEEEeCCCccc---------
Confidence 578888 67766221 23688999999 9988766422 2334445 6899999998532
Q ss_pred hccCccCccCccceeEEecCC
Q psy10828 140 NIAIASPLLSRFDLVLVLLDS 160 (245)
Q Consensus 140 ~i~l~~~LLsRFDLi~~l~D~ 160 (245)
+.++|++|||.++.+...
T Consensus 167 ---l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 167 ---LSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp ---SCHHHHTTCSEEEECCCC
T ss_pred ---cCHHHHhhcCEEeeCCCc
Confidence 568899999988776544
No 13
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.04 E-value=0.0017 Score=58.58 Aligned_cols=37 Identities=5% Similarity=-0.082 Sum_probs=15.3
Q ss_pred chHHHHHhhhccceeEeeccceeeEeecceeeeeecCC
Q psy10828 90 PVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNP 127 (245)
Q Consensus 90 ~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP 127 (245)
.+..|..+| |...+.+...|-...-...+-+++++|.
T Consensus 146 ~~~~Ll~~l-eg~~~~~~~~~~~~~~~~~~~~i~tsn~ 182 (363)
T 3hws_A 146 VQQALLKLI-EGTVAAVPPQGGRKHPQQEFLQVDTSKI 182 (363)
T ss_dssp HHHHHHHHH-HCC----------------CCCCCTTSS
T ss_pred HHHHHHHHh-cCceeeccCccccccCCCceEEEECCCc
Confidence 589999999 9666666444433233334555555554
No 14
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.03 E-value=0.0082 Score=54.21 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=28.4
Q ss_pred chhhcccCce--eccCCCCcCCCCCCC-----------CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCC
Q psy10828 64 GEIFQKKKAI--ISSVSPQKRGAPKSA-----------GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNP 127 (245)
Q Consensus 64 Ga~vLa~~Gv--ide~~~~k~~~~k~~-----------~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP 127 (245)
|.+..+.+|+ |||.+.... +.. ..+.+|+.+| |.+.+++...|-....+.++.+++++|+
T Consensus 131 ~~~~~~~~~vl~iDEi~~l~~---~~~~~~~~~~~~~~~~~~~Ll~~l-e~~~~~~~~~~~~~~~~~~~~~i~t~n~ 203 (376)
T 1um8_A 131 WNVQKAQKGIVFIDEIDKISR---LSENRSITRDVSGEGVQQALLKIV-EGSLVNIPPKGGRKHPEGNFIQIDTSDI 203 (376)
T ss_dssp TCHHHHTTSEEEEETGGGC-----------------CHHHHHHHHHHH-HCCEEC---------------CEECTTC
T ss_pred chhhhcCCeEEEEcCHHHHhh---hcCCCceecccchHHHHHHHHHHh-hccceecccccccccCCcceEEEecCCe
Confidence 3345568899 666662211 100 1678999999 9999988887766666666666666665
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.22 E-value=0.22 Score=43.05 Aligned_cols=73 Identities=22% Similarity=0.200 Sum_probs=48.1
Q ss_pred cccCce--eccCCCCcCCCCCCCC-chHHHHHhhhccceeEeecc-----ceeeEeecceeeeeecCCCcccCCCCChhh
Q psy10828 68 QKKKAI--ISSVSPQKRGAPKSAG-PVAVCHSALWWAKEISFPQA-----GLVCKLNTRCSIIAACNPKGHYDPNIPISV 139 (245)
Q Consensus 68 La~~Gv--ide~~~~k~~~~k~~~-~~~~l~EaM~EqqtIsiaKa-----g~~~~l~ar~sviAa~NP~g~~~~~~~~~~ 139 (245)
++++|+ |||++ .+.. .+..|+.+| +...+.+--. .....-+.++.+|+++|..+.
T Consensus 88 ~~~~~~l~lDEi~-------~l~~~~~~~L~~~l-~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~--------- 150 (324)
T 1hqc_A 88 LEEGDILFIDEIH-------RLSRQAEEHLYPAM-EDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGL--------- 150 (324)
T ss_dssp CCTTCEEEETTTT-------SCCHHHHHHHHHHH-HHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSS---------
T ss_pred ccCCCEEEEECCc-------ccccchHHHHHHHH-HhhhhHHhccccccccccccCCCCEEEEEeCCCccc---------
Confidence 578888 67776 2333 578899999 8887765311 111122347889999997643
Q ss_pred hccCccCccCccceeEEecCC
Q psy10828 140 NIAIASPLLSRFDLVLVLLDS 160 (245)
Q Consensus 140 ~i~l~~~LLsRFDLi~~l~D~ 160 (245)
+.++|++||+.++.+.-.
T Consensus 151 ---~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 151 ---ITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp ---CSCSTTTTCSCEEECCCC
T ss_pred ---CCHHHHhcccEEEecCCC
Confidence 447899999877666543
No 16
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.22 E-value=0.015 Score=50.40 Aligned_cols=90 Identities=9% Similarity=-0.006 Sum_probs=53.2
Q ss_pred hhhcccCce--eccCCCCcCCC-C-C-CCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhh
Q psy10828 65 EIFQKKKAI--ISSVSPQKRGA-P-K-SAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISV 139 (245)
Q Consensus 65 a~vLa~~Gv--ide~~~~k~~~-~-k-~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~ 139 (245)
.+-.+.+|+ |||.+..-..- + . ....+..|...| |.. +.++.||+++|+.. ...
T Consensus 125 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l-~~~-------------~~~~~~i~~~~~~~-------~~~ 183 (309)
T 3syl_A 125 VLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM-ENN-------------RDDLVVILAGYADR-------MEN 183 (309)
T ss_dssp HHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHH-HHC-------------TTTCEEEEEECHHH-------HHH
T ss_pred HHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHH-hcC-------------CCCEEEEEeCChHH-------HHH
Confidence 344577888 77777221000 0 0 112467888899 764 35788999998751 011
Q ss_pred hccCccCccCccceeEEecCCCChhhhhhhhhhhhcc
Q psy10828 140 NIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFG 176 (245)
Q Consensus 140 ~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~ 176 (245)
...+.++|.|||+.++.+. .++.+.-..+..+.+..
T Consensus 184 ~~~~~~~l~~R~~~~i~~~-~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 184 FFQSNPGFRSRIAHHIEFP-DYSDEELFEIAGHMLDD 219 (309)
T ss_dssp HHHHSTTHHHHEEEEEEEC-CCCHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHHhCCeEEEcC-CcCHHHHHHHHHHHHHH
Confidence 2234599999999777654 44444445566666653
No 17
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.96 E-value=0.019 Score=55.32 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=78.4
Q ss_pred cCce--eccCCCCcCCCCCCC-CchHHHHHhhhccce-eEeeccceeeEee-cceeeeeecCCCcccCCCCChhhhccCc
Q psy10828 70 KKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKE-ISFPQAGLVCKLN-TRCSIIAACNPKGHYDPNIPISVNIAIA 144 (245)
Q Consensus 70 ~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~Eqqt-IsiaKag~~~~l~-ar~sviAa~NP~g~~~~~~~~~~~i~l~ 144 (245)
.+++ +||++.... +.. +..++|.+.| +... -.+...+....++ .++.||+|+|+.. .|+
T Consensus 175 ~~~vl~lDEid~l~~---~~~~~~~~~LL~~l-d~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~------------~l~ 238 (543)
T 3m6a_A 175 LNPVFLLDEIDKMSS---DFRGDPSSAMLEVL-DPEQNSSFSDHYIEETFDLSKVLFIATANNLA------------TIP 238 (543)
T ss_dssp SSEEEEEEESSSCC------------CCGGGT-CTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT------------TSC
T ss_pred cCCEEEEhhhhhhhh---hhccCHHHHHHHHH-hhhhcceeecccCCeeecccceEEEeccCccc------------cCC
Confidence 6678 788773221 111 2357888999 7543 3344444444444 6789999999863 567
Q ss_pred cCccCccceeEEecCCCChhhhhhhhhhhh-c----cCCCCCCCCCCCCCCCHHHHHHHHH-HhhccCCCCCHHHHHHHH
Q psy10828 145 SPLLSRFDLVLVLLDSKSEQWDKMVSNYIL-F----GKRLGPSSNQATSLWDVEKLQAYFY-LIKGLRPQMTLEANRILT 218 (245)
Q Consensus 145 ~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl-~----~~~~~~~~~~~~~~l~~e~LrkYIa-yAR~~~P~LS~EA~~~I~ 218 (245)
++|++||+. +-.+.++.+.+..+..+.+ . .+... ...-.++.+.+...+. |.+ |-=-.+.+..|.
T Consensus 239 ~aL~~R~~v--i~~~~~~~~e~~~Il~~~l~~~~~~~~~~~----~~~i~i~~~~l~~l~~~~~~---~~~vR~L~~~i~ 309 (543)
T 3m6a_A 239 GPLRDRMEI--INIAGYTEIEKLEIVKDHLLPKQIKEHGLK----KSNLQLRDQAILDIIRYYTR---EAGVRSLERQLA 309 (543)
T ss_dssp HHHHHHEEE--EECCCCCHHHHHHHHHHTHHHHHHHHTTCC----GGGCEECHHHHHHHHHHHCC---CSSSHHHHHHHH
T ss_pred HHHHhhcce--eeeCCCCHHHHHHHHHHHHHHHHHHHcCCC----cccccCCHHHHHHHHHhCCh---hhchhHHHHHHH
Confidence 999999974 3556677766666655443 2 11111 0122456666666665 332 111124444444
Q ss_pred HHHHHHHhh---cCCCCcccchhhhhhhc
Q psy10828 219 RYYQAQRKA---DMRNAARTTVRLLESLI 244 (245)
Q Consensus 219 ~yY~~lR~~---~~~~~~~iTvRqLESLI 244 (245)
+.....-.. .......||...|+..+
T Consensus 310 ~~~~~aa~~~~~~~~~~~~It~~~l~~~L 338 (543)
T 3m6a_A 310 AICRKAAKAIVAEERKRITVTEKNLQDFI 338 (543)
T ss_dssp HHHHHHHHHHHTTCCSCCEECTTTTHHHH
T ss_pred HHHHHHHHHHHhcCCcceecCHHHHHHHh
Confidence 333221111 11234567877777543
No 18
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.84 E-value=0.0086 Score=55.12 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=45.1
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
.+|.+-.|+||+ +||++. +. ..+..|..+| |.+++. +.|-....++.+-||||+|..
T Consensus 223 ~~g~~~~a~~gtlfldei~~-------l~~~~q~~Ll~~l-~~~~~~--~~g~~~~~~~~~rii~at~~~ 282 (387)
T 1ny5_A 223 KEGFFELADGGTLFLDEIGE-------LSLEAQAKLLRVI-ESGKFY--RLGGRKEIEVNVRILAATNRN 282 (387)
T ss_dssp BCCHHHHTTTSEEEEESGGG-------CCHHHHHHHHHHH-HHSEEC--CBTCCSBEECCCEEEEEESSC
T ss_pred cCCceeeCCCcEEEEcChhh-------CCHHHHHHHHHHH-hcCcEE--eCCCCceeeccEEEEEeCCCC
Confidence 689999999999 777772 33 3689999999 888764 556566778888999999964
No 19
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.92 E-value=0.055 Score=49.49 Aligned_cols=78 Identities=14% Similarity=0.093 Sum_probs=53.9
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCCh
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPI 137 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~ 137 (245)
.+|.+-+|+||. +||++. +. ..+..|..+| |.+++. +.|-....++.+-+|||+|.. .. .
T Consensus 214 ~~g~~~~a~~gtlfldei~~-------l~~~~Q~~Ll~~l-~~~~~~--~~g~~~~~~~~~rii~at~~~l~~------~ 277 (368)
T 3dzd_A 214 KKGKLELADQGTLFLDEVGE-------LDQRVQAKLLRVL-ETGSFT--RLGGNQKIEVDIRVISATNKNLEE------E 277 (368)
T ss_dssp EECHHHHTTTSEEEEETGGG-------SCHHHHHHHHHHH-HHSEEC--CBTCCCBEECCCEEEEEESSCHHH------H
T ss_pred cCChHhhcCCCeEEecChhh-------CCHHHHHHHHHHH-HhCCcc--cCCCCcceeeeeEEEEecCCCHHH------H
Confidence 578899999999 777772 23 3689999999 888764 556556678889999999954 11 1
Q ss_pred hhhccCccCccCccceeE
Q psy10828 138 SVNIAIASPLLSRFDLVL 155 (245)
Q Consensus 138 ~~~i~l~~~LLsRFDLi~ 155 (245)
.....+-..|+.|...+-
T Consensus 278 v~~g~fr~dL~~rl~~~~ 295 (368)
T 3dzd_A 278 IKKGNFREDLYYRLSVFQ 295 (368)
T ss_dssp HHTTSSCHHHHHHHTSEE
T ss_pred HHcCCccHHHHHHhCCeE
Confidence 223344466777765443
No 20
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.77 E-value=0.13 Score=48.91 Aligned_cols=130 Identities=17% Similarity=0.087 Sum_probs=73.6
Q ss_pred chhhcc-cCceeccCCCCcCCCCC---CCC------chHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCC
Q psy10828 64 GEIFQK-KKAIISSVSPQKRGAPK---SAG------PVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDP 133 (245)
Q Consensus 64 Ga~vLa-~~Gvide~~~~k~~~~k---~~~------~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~ 133 (245)
+|+-.| .+|++..++++|.+- + ... .+.+|.++| |-.+++. |++..- -.++-+||++ .|..
T Consensus 243 ~ai~~ae~~~il~~DEidki~~-~~~~~~~D~s~egvq~aLL~~l-e~~~~~~-~~~~~d--~~~ilfI~~g----af~~ 313 (444)
T 1g41_A 243 KAIDAVEQNGIVFIDEIDKICK-KGEYSGADVSREGVQRDLLPLV-EGSTVST-KHGMVK--TDHILFIASG----AFQV 313 (444)
T ss_dssp HHHHHHHHHCEEEEETGGGGSC-CSSCSSSHHHHHHHHHHHHHHH-HCCEEEE-TTEEEE--CTTCEEEEEE----CCSS
T ss_pred HHHHHhccCCeeeHHHHHHHhh-ccCCCCCCchHHHHHHHHHHHh-ccccccc-ccceec--CCcEEEEecc----cccc
Confidence 444456 788744444444431 1 111 345899999 9887776 664321 2345567664 2221
Q ss_pred CCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhh--ccCCCCCH
Q psy10828 134 NIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIK--GLRPQMTL 211 (245)
Q Consensus 134 ~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR--~~~P~LS~ 211 (245)
.++. + +-++|++||+.++.+.+- +.+.=. +|+..- -..++++|..... ..+-.+++
T Consensus 314 ~~~~-d---lipel~~R~~i~i~l~~l-t~~e~~----~Il~~~-------------~~~l~~q~~~~~~~~~~~l~~~~ 371 (444)
T 1g41_A 314 ARPS-D---LIPELQGRLPIRVELTAL-SAADFE----RILTEP-------------HASLTEQYKALMATEGVNIAFTT 371 (444)
T ss_dssp CCGG-G---SCHHHHTTCCEEEECCCC-CHHHHH----HHHHSS-------------TTCHHHHHHHHHHTTTCEEEECH
T ss_pred CChh-h---cchHHhcccceeeeCCCC-CHHHHH----HHHHHH-------------HHhHHHHHHHHhcccCceEEECH
Confidence 1111 1 337899999988877433 222111 333211 0125677877654 46778999
Q ss_pred HHHHHHHHHHHHH
Q psy10828 212 EANRILTRYYQAQ 224 (245)
Q Consensus 212 EA~~~I~~yY~~l 224 (245)
+|.+.|.+.+...
T Consensus 372 ~al~~i~~~a~~~ 384 (444)
T 1g41_A 372 DAVKKIAEAAFRV 384 (444)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9988888776554
No 21
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.82 E-value=0.16 Score=57.84 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=52.8
Q ss_pred chHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhh
Q psy10828 90 PVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMV 169 (245)
Q Consensus 90 ~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~i 169 (245)
..+.|++.| |++.+-..+.+...++ .++.++|||||.|... .-.|++.|++||-+ +..+.++.+.=..|
T Consensus 1358 ~lelLRq~l-e~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gG-------R~~l~~rllRrf~v--i~i~~P~~~~l~~I 1426 (2695)
T 4akg_A 1358 VVLFLRQLM-EKQGFWKTPENKWVTI-ERIHIVGACNPPTDPG-------RIPMSERFTRHAAI--LYLGYPSGKSLSQI 1426 (2695)
T ss_dssp HHHHHHHHH-HTSSEECTTTCCEEEE-ESEEEEEEECCTTSTT-------CCCCCHHHHTTEEE--EECCCCTTTHHHHH
T ss_pred HHHHHHHHH-hcCCEEEcCCCcEEEe-cCEEEEEecCCCccCC-------CccCChhhhheeeE--EEeCCCCHHHHHHH
Confidence 689999999 9998888777766677 8999999999983111 12577999999944 33455665544445
Q ss_pred hhhhh
Q psy10828 170 SNYIL 174 (245)
Q Consensus 170 a~hIl 174 (245)
-..++
T Consensus 1427 ~~~il 1431 (2695)
T 4akg_A 1427 YEIYY 1431 (2695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 22
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.83 E-value=0.13 Score=51.02 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=57.8
Q ss_pred hhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhh
Q psy10828 65 EIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVN 140 (245)
Q Consensus 65 a~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~ 140 (245)
++-.+.+|| +||++ ++. +.+..|..+| |.+.++...+ . ..-..++.||+|+|.. ...+... ....
T Consensus 574 ~~~~~~~~vl~lDEi~-------~~~~~~~~~Ll~~l-e~g~~~~~~g-~-~~~~~~~~iI~ttn~~~~~~~~~~-~~~~ 642 (758)
T 3pxi_A 574 KVRRKPYSVVLLDAIE-------KAHPDVFNILLQVL-EDGRLTDSKG-R-TVDFRNTILIMTSNVGASEKDKVM-GELK 642 (758)
T ss_dssp HHHHCSSSEEEEECGG-------GSCHHHHHHHHHHH-HHSBCC-------CCBCTTCEEEEEESSSTTCCHHHH-HHHH
T ss_pred HHHhCCCeEEEEeCcc-------ccCHHHHHHHHHHh-ccCeEEcCCC-C-EeccCCeEEEEeCCCChhhHHHHH-HHHH
Confidence 344566778 77776 233 4689999999 9998877542 2 2345789999999965 2211000 0111
Q ss_pred ccCccCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 141 IAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 141 i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
-.+.+.|++|||.++. ...++.+.-..|.++.+.
T Consensus 643 ~~f~p~l~~Rl~~~i~-~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 643 RAFRPEFINRIDEIIV-FHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp HHSCHHHHTTSSEEEE-CC--CHHHHHHHHHHHHH
T ss_pred hhCCHHHHhhCCeEEe-cCCCCHHHHHHHHHHHHH
Confidence 2378999999998655 444554444445555543
No 23
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.07 E-value=0.39 Score=48.40 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=60.8
Q ss_pred cccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCC----C---CC
Q psy10828 68 QKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDP----N---IP 136 (245)
Q Consensus 68 La~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~----~---~~ 136 (245)
.+.+|+ |||++ + +. +.+..|..+| |.+.++-.+ |..+.+ .++.||+++|.. ..... . ..
T Consensus 658 ~~~~~vl~lDEi~--~-----l~~~~~~~Ll~~l-~~~~~~~~~-g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~ 727 (854)
T 1qvr_A 658 RRPYSVILFDEIE--K-----AHPDVFNILLQIL-DDGRLTDSH-GRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYER 727 (854)
T ss_dssp HCSSEEEEESSGG--G-----SCHHHHHHHHHHH-TTTEECCSS-SCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHH
T ss_pred hCCCeEEEEeccc--c-----cCHHHHHHHHHHh-ccCceECCC-CCEecc-CCeEEEEecCcChHHHhhhcccccchHH
Confidence 355777 77776 2 33 3689999999 999987443 454444 357799999974 22110 0 00
Q ss_pred hhh------hccCccCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 137 ISV------NIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 137 ~~~------~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
+.+ .-.+.+.|++|||.+++... ++.+.-..|+++.+.
T Consensus 728 l~~~v~~~~~~~f~~~l~~Rl~~~i~~~p-l~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 728 IRDEVFKVLQQHFRPEFLNRLDEIVVFRP-LTKEQIRQIVEIQLS 771 (854)
T ss_dssp HHHHHHHHHHTTSCHHHHHTCSBCCBCCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHhcCeEEeCCC-CCHHHHHHHHHHHHH
Confidence 111 33688999999998877643 554444455665554
No 24
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=84.37 E-value=4.6 Score=37.73 Aligned_cols=111 Identities=13% Similarity=0.026 Sum_probs=70.5
Q ss_pred ceeeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHH
Q psy10828 118 RCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQA 197 (245)
Q Consensus 118 r~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~Lrk 197 (245)
++.+|+|+|+.. ....+.+++.|++||.. +..+.|+.+.-..+-.+++..... .....++.+.+..
T Consensus 291 ~v~vI~at~~~e-------~~~~~~~~~al~~Rf~~--i~v~~p~~e~~~~iL~~~~~~~~~-----~~~~~i~~~al~~ 356 (468)
T 3pxg_A 291 ELQCIGATTLDE-------YRKYIEKDAALERRFQP--IQVDQPSVDESIQILQGLRDRYEA-----HHRVSITDDAIEA 356 (468)
T ss_dssp SCEEEEECCTTT-------THHHHTTCSHHHHSEEE--EECCCCCHHHHHHHHHHTTTTSGG-----GSSCSCCHHHHHH
T ss_pred CEEEEecCCHHH-------HHHHhhcCHHHHHhCcc--ceeCCCCHHHHHHHHHHHHHHHHH-----hcCCCCCHHHHHH
Confidence 466899999762 11234677999999984 556677666555565665543211 0123578888888
Q ss_pred HHHHhhcc--CCCCCHHHHHHHHHHHHHHHhhcCCCCcccchhhhhhhc
Q psy10828 198 YFYLIKGL--RPQMTLEANRILTRYYQAQRKADMRNAARTTVRLLESLI 244 (245)
Q Consensus 198 YIayAR~~--~P~LS~EA~~~I~~yY~~lR~~~~~~~~~iTvRqLESLI 244 (245)
-+.++.++ ...+++.|.+++...-...|-.. ...|..+|+||..|
T Consensus 357 l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~--~~~p~~i~~l~~~i 403 (468)
T 3pxg_A 357 AVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS--FTTPPNLKELEQKL 403 (468)
T ss_dssp HHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT--TSCCSSTHHHHHHH
T ss_pred HHHHHHHHhccCcCCcHHHHHHHHHHHHHHhcc--CCCchHHHHHHHHH
Confidence 88888753 33478889888876544433322 23567788777543
No 25
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=78.27 E-value=5.9 Score=37.01 Aligned_cols=134 Identities=18% Similarity=0.119 Sum_probs=67.5
Q ss_pred ccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhhccCccC
Q psy10828 69 KKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASP 146 (245)
Q Consensus 69 a~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~ 146 (245)
+.+++ |||.+.... ..++.|...| |.++ +.+|+|++..- ...+.++
T Consensus 105 ~~~~iLfIDEI~~l~~------~~q~~LL~~l-e~~~---------------v~lI~att~n~----------~~~l~~a 152 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNK------SQQDAFLPHI-EDGT---------------ITFIGATTENP----------SFELNSA 152 (447)
T ss_dssp TCCEEEEEETTTCC------------CCHHHH-HTTS---------------CEEEEEESSCG----------GGSSCHH
T ss_pred CCCcEEEEeChhhhCH------HHHHHHHHHH-hcCc---------------eEEEecCCCCc----------ccccCHH
Confidence 45677 788774322 3577888999 8754 45566663220 1245689
Q ss_pred ccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhh-ccCCCCCHHHHHHHHHHHHHHH
Q psy10828 147 LLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIK-GLRPQMTLEANRILTRYYQAQR 225 (245)
Q Consensus 147 LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR-~~~P~LS~EA~~~I~~yY~~lR 225 (245)
|+|||..+. ...++.+.-..+..+.+......- ......++.+.+.....++. +++ ++..+|........
T Consensus 153 L~sR~~v~~--l~~l~~edi~~il~~~l~~~~~~~--~~~~~~i~~~al~~L~~~~~Gd~R-----~lln~Le~a~~~a~ 223 (447)
T 3pvs_A 153 LLSRARVYL--LKSLSTEDIEQVLTQAMEDKTRGY--GGQDIVLPDETRRAIAELVNGDAR-----RALNTLEMMADMAE 223 (447)
T ss_dssp HHTTEEEEE--CCCCCHHHHHHHHHHHHHCTTTSS--TTSSEECCHHHHHHHHHHHCSCHH-----HHHHHHHHHHHHSC
T ss_pred HhCceeEEe--eCCcCHHHHHHHHHHHHHHHhhhh--ccccCcCCHHHHHHHHHHCCCCHH-----HHHHHHHHHHHhcc
Confidence 999998433 555655555556666665421110 00123466676666666653 222 44444443332211
Q ss_pred hhcCCCCcccchhhhhhhc
Q psy10828 226 KADMRNAARTTVRLLESLI 244 (245)
Q Consensus 226 ~~~~~~~~~iTvRqLESLI 244 (245)
.. ..+...||...++.++
T Consensus 224 ~~-~~~~~~It~e~v~~~l 241 (447)
T 3pvs_A 224 VD-DSGKRVLKPELLTEIA 241 (447)
T ss_dssp BC-TTSCEECCHHHHHHHH
T ss_pred cc-cCCCCccCHHHHHHHH
Confidence 00 0012357777666543
No 26
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=69.27 E-value=12 Score=42.97 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=39.3
Q ss_pred HHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhhccCccCccCccc
Q psy10828 94 CHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFD 152 (245)
Q Consensus 94 l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFD 152 (245)
++++| ..+..+|.--|-...++-.|.|++++||- |. -...||.+|.+||=
T Consensus 724 i~~al-~~~~~~i~~~g~~i~l~~~~~vfiT~NPg--y~------g~~eLP~~Lk~~Fr 773 (2695)
T 4akg_A 724 IQNGL-QVGKSHITLLEEETPLSPHTAVFITLNPG--YN------GRSELPENLKKSFR 773 (2695)
T ss_dssp HHHHH-HHTCSEEECSSSEEECCTTCEEEEEECCC--SS------SSCCCCHHHHTTEE
T ss_pred HHHHH-HcCCcEEeeCCcEEecCCCceEEEEeCCC--cc------CcccccHHHHhheE
Confidence 38899 77777777778888999999999999995 21 12367888999984
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.08 E-value=6.8 Score=45.65 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=50.4
Q ss_pred chHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhh
Q psy10828 90 PVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMV 169 (245)
Q Consensus 90 ~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~i 169 (245)
..+.|++.| |++..-..+.+-...+ .++.++|||||.|... .-.+++.|++||-++.+ +.++.+.-..|
T Consensus 1396 ~ielLrqll-d~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gG-------r~~l~~Rf~r~F~vi~i--~~ps~esL~~I 1464 (3245)
T 3vkg_A 1396 VITFIRQMV-EKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAG-------RVQLTHRFLRHAPILLV--DFPSTSSLTQI 1464 (3245)
T ss_dssp HHHHHHHHH-HHSEEEETTTTEEEEE-SSEEEEEEECCTTSTT-------CCCCCHHHHTTCCEEEC--CCCCHHHHHHH
T ss_pred HHHHHHHHH-HcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCC-------CccCCHHHHhhceEEEe--CCCCHHHHHHH
Confidence 589999999 9998877655555555 7899999999973211 13578999999987543 55665555555
Q ss_pred hh
Q psy10828 170 SN 171 (245)
Q Consensus 170 a~ 171 (245)
-.
T Consensus 1465 f~ 1466 (3245)
T 3vkg_A 1465 YG 1466 (3245)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=66.95 E-value=12 Score=32.51 Aligned_cols=51 Identities=16% Similarity=0.004 Sum_probs=28.6
Q ss_pred cCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhh
Q psy10828 142 AIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIK 203 (245)
Q Consensus 142 ~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR 203 (245)
.++++|+|||..+ -...++.+.-..+..+.+.... ..++.+.+.....++.
T Consensus 242 ~l~~~l~sR~~~i--~~~~~~~~e~~~il~~~~~~~~---------~~~~~~~l~~l~~~~~ 292 (368)
T 3uk6_A 242 GIPIDLLDRLLIV--STTPYSEKDTKQILRIRCEEED---------VEMSEDAYTVLTRIGL 292 (368)
T ss_dssp TCCHHHHTTEEEE--EECCCCHHHHHHHHHHHHHHTT---------CCBCHHHHHHHHHHHH
T ss_pred cCCHHHHhhccEE--EecCCCHHHHHHHHHHHHHHcC---------CCCCHHHHHHHHHHhc
Confidence 5778999999873 4455555444455555444221 2345555555555554
No 29
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=64.72 E-value=12 Score=34.43 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=33.9
Q ss_pred ce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC-cccCCCCChhhhccCccCc
Q psy10828 72 AI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPL 147 (245)
Q Consensus 72 Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~-g~~~~~~~~~~~i~l~~~L 147 (245)
|| |||.+ . +. ...++|+.+| |.. +..+-|+++ ||. +.-...........+++.|
T Consensus 297 ~VliIDEa~--~-----l~~~a~~aLlk~l-Ee~-------------~~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i 354 (456)
T 2c9o_A 297 GVLFVDEVH--M-----LDIECFTYLHRAL-ESS-------------IAPIVIFAS-NRGNCVIRGTEDITSPHGIPLDL 354 (456)
T ss_dssp CEEEEESGG--G-----CBHHHHHHHHHHT-TST-------------TCCEEEEEE-CCSEEECBTTSSCEEETTCCHHH
T ss_pred eEEEEechh--h-----cCHHHHHHHHHHh-hcc-------------CCCEEEEec-CCccccccccccccccccCChhH
Confidence 67 66666 2 33 3689999999 855 223323333 553 1100000122344788899
Q ss_pred cCcccee
Q psy10828 148 LSRFDLV 154 (245)
Q Consensus 148 LsRFDLi 154 (245)
+|||-.+
T Consensus 355 ~sR~~~~ 361 (456)
T 2c9o_A 355 LDRVMII 361 (456)
T ss_dssp HTTEEEE
T ss_pred Hhhccee
Confidence 9999874
No 30
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=63.58 E-value=2.2 Score=32.94 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=34.0
Q ss_pred cchhhcccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 63 AGEIFQKKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 63 aGa~vLa~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
.|.+-.|++|+ |||++.... +.+..|.++| |.+. +.++.+|+++|..
T Consensus 68 ~~~~~~a~~~~l~lDei~~l~~------~~q~~Ll~~l-~~~~------------~~~~~iI~~tn~~ 116 (143)
T 3co5_A 68 MELLQKAEGGVLYVGDIAQYSR------NIQTGITFII-GKAE------------RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHTTTSEEEEEECTTCCH------HHHHHHHHHH-HHHT------------TTTCEEEEEEEEC
T ss_pred hhHHHhCCCCeEEEeChHHCCH------HHHHHHHHHH-HhCC------------CCCEEEEEecCCC
Confidence 45667788998 788773211 3578889999 7653 5678899999965
No 31
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=62.92 E-value=19 Score=27.88 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=32.0
Q ss_pred cCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhhccCccCc
Q psy10828 70 KKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPL 147 (245)
Q Consensus 70 ~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~L 147 (245)
.+++ |||.+... ...+..|...| |.. +.++.+++++|... .+.++|
T Consensus 102 ~~~vliiDe~~~l~------~~~~~~l~~~l-~~~-------------~~~~~~i~~~~~~~------------~~~~~l 149 (226)
T 2chg_A 102 PFKIIFLDEADALT------ADAQAALRRTM-EMY-------------SKSCRFILSCNYVS------------RIIEPI 149 (226)
T ss_dssp SCEEEEEETGGGSC------HHHHHHHHHHH-HHT-------------TTTEEEEEEESCGG------------GSCHHH
T ss_pred CceEEEEeChhhcC------HHHHHHHHHHH-Hhc-------------CCCCeEEEEeCChh------------hcCHHH
Confidence 4455 67766221 13567788888 653 34677888887652 234778
Q ss_pred cCccc
Q psy10828 148 LSRFD 152 (245)
Q Consensus 148 LsRFD 152 (245)
.+||.
T Consensus 150 ~~r~~ 154 (226)
T 2chg_A 150 QSRCA 154 (226)
T ss_dssp HTTSE
T ss_pred HHhCc
Confidence 88987
No 32
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=53.28 E-value=24 Score=30.63 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=30.8
Q ss_pred cceeeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 117 TRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 117 ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
.++.||||+|... .|.+.|++|||..+.+ ..++.+.-..+-++.+.
T Consensus 153 ~~v~vi~atn~~~------------~ld~al~~Rf~~~i~~-~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 153 QGVLVLGATNIPW------------QLDSAIRRRFERRIYI-PLPDLAARTTMFEINVG 198 (322)
T ss_dssp CCEEEEEEESCGG------------GSCHHHHHHCCEEEEC-CCCCHHHHHHHHHHHHT
T ss_pred CceEEEEecCChh------------hCCHHHHcccCeEEEe-CCCCHHHHHHHHHHHhc
Confidence 4678999999762 2558899999988754 34555554555555544
No 33
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=53.02 E-value=18 Score=30.99 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=40.6
Q ss_pred cCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhhccCccCc
Q psy10828 70 KKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPL 147 (245)
Q Consensus 70 ~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~L 147 (245)
..++ |||.+.... .....+|+..| |.. +.++.||+++|+.. .+.++|
T Consensus 105 ~~~vliiDEi~~l~~-----~~~~~~L~~~l-e~~-------------~~~~~iI~~~n~~~------------~l~~~l 153 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL-----AESQRHLRSFM-EAY-------------SSNCSIIITANNID------------GIIKPL 153 (324)
T ss_dssp CEEEEEEESCCCGGG-----HHHHHHHHHHH-HHH-------------GGGCEEEEEESSGG------------GSCTTH
T ss_pred CCeEEEEECCcccCc-----HHHHHHHHHHH-HhC-------------CCCcEEEEEeCCcc------------ccCHHH
Confidence 4455 788874320 13678899989 753 35688999999762 367899
Q ss_pred cCccceeEEecCCCChh
Q psy10828 148 LSRFDLVLVLLDSKSEQ 164 (245)
Q Consensus 148 LsRFDLi~~l~D~~~~~ 164 (245)
.|||.. +-...++.+
T Consensus 154 ~sR~~~--i~~~~~~~~ 168 (324)
T 3u61_B 154 QSRCRV--ITFGQPTDE 168 (324)
T ss_dssp HHHSEE--EECCCCCHH
T ss_pred HhhCcE--EEeCCCCHH
Confidence 999963 334445433
No 34
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=50.44 E-value=26 Score=29.36 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=26.4
Q ss_pred chHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhhccCccCccCccc
Q psy10828 90 PVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFD 152 (245)
Q Consensus 90 ~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFD 152 (245)
...+|...| |. .+..+.+|.++|... .+.++|.||+.
T Consensus 118 ~~~~L~~~l-e~-------------~~~~~~~i~~~~~~~------------~l~~~l~sr~~ 154 (319)
T 2chq_A 118 AQAALRRTM-EM-------------YSKSCRFILSCNYVS------------RIIEPIQSRCA 154 (319)
T ss_dssp HHHTTGGGT-SS-------------SSSSEEEEEEESCGG------------GSCHHHHTTCE
T ss_pred HHHHHHHHH-Hh-------------cCCCCeEEEEeCChh------------hcchHHHhhCe
Confidence 467788888 75 245677888887642 35688999987
No 35
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.42 E-value=34 Score=29.20 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=49.3
Q ss_pred cCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhhccCccC
Q psy10828 70 KKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASP 146 (245)
Q Consensus 70 ~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~ 146 (245)
+.++ |||.+ . +. ..+.+|.+.| |... .++.++.++|... .+.++
T Consensus 133 ~~~vliiDE~~--~-----l~~~~~~~Ll~~l-e~~~-------------~~~~~il~~~~~~------------~l~~~ 179 (353)
T 1sxj_D 133 PYKIIILDEAD--S-----MTADAQSALRRTM-ETYS-------------GVTRFCLICNYVT------------RIIDP 179 (353)
T ss_dssp SCEEEEETTGG--G-----SCHHHHHHHHHHH-HHTT-------------TTEEEEEEESCGG------------GSCHH
T ss_pred CceEEEEECCC--c-----cCHHHHHHHHHHH-HhcC-------------CCceEEEEeCchh------------hCcch
Confidence 4446 67765 2 22 3578899999 7642 3455666777542 26688
Q ss_pred ccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHhh
Q psy10828 147 LLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIK 203 (245)
Q Consensus 147 LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~LrkYIayAR 203 (245)
|.+||. ++.+ ..++.+.-..+..+++... ...++.+.++....++.
T Consensus 180 l~sR~~-~i~~-~~~~~~~~~~~l~~~~~~~---------~~~i~~~~l~~l~~~~~ 225 (353)
T 1sxj_D 180 LASQCS-KFRF-KALDASNAIDRLRFISEQE---------NVKCDDGVLERILDISA 225 (353)
T ss_dssp HHHHSE-EEEC-CCCCHHHHHHHHHHHHHTT---------TCCCCHHHHHHHHHHTS
T ss_pred hhccCc-eEEe-CCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHHcC
Confidence 999997 3332 3344333333333433321 12356666666666554
No 36
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=46.54 E-value=46 Score=29.05 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=39.4
Q ss_pred ccCce--eccCCCCcCCCCCCCCchHHHHHhhhccceeEee--cc---ceeeEeecceeeeeecCCCcccCCCCChhhhc
Q psy10828 69 KKKAI--ISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFP--QA---GLVCKLNTRCSIIAACNPKGHYDPNIPISVNI 141 (245)
Q Consensus 69 a~~Gv--ide~~~~k~~~~k~~~~~~~l~EaM~EqqtIsia--Ka---g~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i 141 (245)
..+.| |||.+... ....+.|..+| |...+.+. +. ........++.+++++|..+
T Consensus 101 ~~~~v~~iDE~~~l~------~~~~e~L~~~~-~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~------------ 161 (334)
T 1in4_A 101 ERGDVLFIDEIHRLN------KAVEELLYSAI-EDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG------------ 161 (334)
T ss_dssp CTTCEEEEETGGGCC------HHHHHHHHHHH-HTSCCCC---------------CCCEEEEEESCGG------------
T ss_pred cCCCEEEEcchhhcC------HHHHHHHHHHH-HhcccceeeccCcccccccccCCCeEEEEecCCcc------------
Confidence 34556 77766211 12567788888 76544321 11 01111223566666666442
Q ss_pred cCccCccCccceeEEecCCCChh
Q psy10828 142 AIASPLLSRFDLVLVLLDSKSEQ 164 (245)
Q Consensus 142 ~l~~~LLsRFDLi~~l~D~~~~~ 164 (245)
.|++++.|||.+.+ -+|.++.+
T Consensus 162 ~Ls~~l~sR~~l~~-~Ld~~~~~ 183 (334)
T 1in4_A 162 LLSSPLRSRFGIIL-ELDFYTVK 183 (334)
T ss_dssp GSCHHHHTTCSEEE-ECCCCCHH
T ss_pred cCCHHHHHhcCcee-eCCCCCHH
Confidence 46789999998663 34555544
No 37
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=42.63 E-value=74 Score=28.03 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=31.1
Q ss_pred eecceeeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 115 LNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 115 l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
.+.++.||||+|+.. .+.+.|++||+.++.+ ..++.+.-..+-.+++.
T Consensus 218 ~~~~v~vI~atn~~~------------~l~~~l~~Rf~~~i~i-~~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 218 SEDRILVVGATNRPQ------------EIDEAARRRLVKRLYI-PLPEASARKQIVINLMS 265 (357)
T ss_dssp CCCCEEEEEEESCGG------------GBCHHHHTTCCEEEEC-CCCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCChh------------hCCHHHHhhCceEEEe-CCcCHHHHHHHHHHHHh
Confidence 356889999999862 2457899999976654 34544433444455544
No 38
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.99 E-value=1.3e+02 Score=29.48 Aligned_cols=94 Identities=13% Similarity=0.019 Sum_probs=59.0
Q ss_pred ceeeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHH
Q psy10828 118 RCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQA 197 (245)
Q Consensus 118 r~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~Lrk 197 (245)
.+.+|+|+|+.. ....+.+.+.|.+||.. +..+.++.+.-..|-.+++..... .....++.+.+..
T Consensus 291 ~v~~I~at~~~~-------~~~~~~~d~al~rRf~~--i~v~~p~~~~~~~il~~~~~~~~~-----~~~~~i~~~al~~ 356 (758)
T 3pxi_A 291 ELQCIGATTLDE-------YRKYIEKDAALERRFQP--IQVDQPSVDESIQILQGLRDRYEA-----HHRVSITDDAIEA 356 (758)
T ss_dssp SCEEEEECCTTT-------THHHHTTCSHHHHSEEE--EECCCCCHHHHHHHHHHTTTTSGG-----GSSCSCCHHHHHH
T ss_pred CEEEEeCCChHH-------HHHHhhccHHHHhhCcE--EEeCCCCHHHHHHHHHHHHHHHHH-----hcCCCCCHHHHHH
Confidence 467899999872 12234567999999964 445666655555555555543211 0123477888888
Q ss_pred HHHHhhc-c-CCCCCHHHHHHHHHHHHHHH
Q psy10828 198 YFYLIKG-L-RPQMTLEANRILTRYYQAQR 225 (245)
Q Consensus 198 YIayAR~-~-~P~LS~EA~~~I~~yY~~lR 225 (245)
-..++.+ + ...++..|.+++...-...|
T Consensus 357 ~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~ 386 (758)
T 3pxi_A 357 AVKLSDRYISDRFLPDKAIDLIDEAGSKVR 386 (758)
T ss_dssp HHHHHHHSSCCSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccCcCCcHHHHHHHHHHHHHH
Confidence 8888875 3 34466778888876654443
No 39
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=39.97 E-value=47 Score=27.85 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=32.6
Q ss_pred ccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhhccCcc
Q psy10828 69 KKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIAS 145 (245)
Q Consensus 69 a~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~ 145 (245)
+.+++ |||.+. +. ..+.+|.+.| |.. +..+.++.++|... .+.+
T Consensus 109 ~~~~vliiDe~~~-------l~~~~~~~L~~~l-e~~-------------~~~~~~i~~~~~~~------------~l~~ 155 (327)
T 1iqp_A 109 ASFKIIFLDEADA-------LTQDAQQALRRTM-EMF-------------SSNVRFILSCNYSS------------KIIE 155 (327)
T ss_dssp CSCEEEEEETGGG-------SCHHHHHHHHHHH-HHT-------------TTTEEEEEEESCGG------------GSCH
T ss_pred CCCeEEEEeCCCc-------CCHHHHHHHHHHH-Hhc-------------CCCCeEEEEeCCcc------------ccCH
Confidence 44566 677662 22 3578899999 753 23556777777541 2557
Q ss_pred CccCccc
Q psy10828 146 PLLSRFD 152 (245)
Q Consensus 146 ~LLsRFD 152 (245)
+|.|||.
T Consensus 156 ~l~sr~~ 162 (327)
T 1iqp_A 156 PIQSRCA 162 (327)
T ss_dssp HHHHTEE
T ss_pred HHHhhCc
Confidence 7888987
No 40
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=39.72 E-value=64 Score=28.65 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=32.1
Q ss_pred eeeEeecceeeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhcc
Q psy10828 111 LVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFG 176 (245)
Q Consensus 111 ~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~ 176 (245)
.....+.++.|||++|+.. .+.+.|++||+.++.+ ..++.+.-..+..+++..
T Consensus 245 ~~~~~~~~v~vI~atn~~~------------~l~~~l~~R~~~~i~i-~~p~~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 245 VQSAGDDRVLVMGATNRPQ------------ELDEAVLRRFIKRVYV-SLPNEETRLLLLKNLLCK 297 (389)
T ss_dssp HC-----CEEEEEEESCGG------------GCCHHHHTTCCEEEEC-CCCCHHHHHHHHHHHHTT
T ss_pred ccccCCCCEEEEEecCCch------------hcCHHHHcCcceEEEc-CCcCHHHHHHHHHHHHHh
Confidence 3333467899999999752 3458999999976554 445555444555555553
No 41
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=38.08 E-value=26 Score=30.25 Aligned_cols=69 Identities=16% Similarity=0.018 Sum_probs=37.3
Q ss_pred hHHHHHhhhccceeEeeccceeeEeecceeeeeecCCCcccCCCCChhhhccCccCcc--CccceeEEecCCCChhhhhh
Q psy10828 91 VAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLL--SRFDLVLVLLDSKSEQWDKM 168 (245)
Q Consensus 91 ~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LL--sRFDLi~~l~D~~~~~~D~~ 168 (245)
...|.+.| +..+..-........-..++.||+|+|... .++++|+ +|||.++.+ |+.+.=..
T Consensus 129 ~~~Ll~~l-d~~~~~~~~~~~~~~~~~~v~vI~ttN~~~------------~ld~al~R~~R~d~~i~~---P~~~~r~~ 192 (293)
T 3t15_A 129 NATLMNIA-DNPTNVQLPGMYNKQENARVPIIVTGNDFS------------TLYAPLIRDGRMEKFYWA---PTREDRIG 192 (293)
T ss_dssp HHHHHHHH-HCCC-----------CCCCCCEEEECSSCC------------C--CHHHHHHHEEEEEEC---CCHHHHHH
T ss_pred HHHHHHHh-ccccccccccccccccCCCcEEEEecCCcc------------cCCHHHhCCCCCceeEeC---cCHHHHHH
Confidence 37788888 644322111111112245789999999652 3567888 599987763 55544445
Q ss_pred hhhhhhc
Q psy10828 169 VSNYILF 175 (245)
Q Consensus 169 ia~hIl~ 175 (245)
|.++++.
T Consensus 193 Il~~~~~ 199 (293)
T 3t15_A 193 VCTGIFR 199 (293)
T ss_dssp HHHHHHG
T ss_pred HHHHhcc
Confidence 5555554
No 42
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=35.27 E-value=10 Score=29.00 Aligned_cols=46 Identities=7% Similarity=-0.126 Sum_probs=32.2
Q ss_pred ccchhhcccCce--eccCCCCcCCCCCCC-CchHHHHHhhhccceeEeeccceeeEeecceeeeeecCCC
Q psy10828 62 AAGEIFQKKKAI--ISSVSPQKRGAPKSA-GPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIAACNPK 128 (245)
Q Consensus 62 ~aGa~vLa~~Gv--ide~~~~k~~~~k~~-~~~~~l~EaM~EqqtIsiaKag~~~~l~ar~sviAa~NP~ 128 (245)
..|.+-.|++|+ |||++. +. +.+..|.++| +. .+.++.+|+++|..
T Consensus 68 ~~~~~~~a~~g~l~ldei~~-------l~~~~q~~Ll~~l-~~-------------~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 68 LNDFIALAQGGTLVLSHPEH-------LTREQQYHLVQLQ-SQ-------------EHRPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHHHHTTSCEEEECGGG-------SCHHHHHHHHHHH-HS-------------SSCSSCEEEEESSC
T ss_pred hhcHHHHcCCcEEEEcChHH-------CCHHHHHHHHHHH-hh-------------cCCCEEEEEECCcC
Confidence 356777899999 777762 22 3577888888 43 24567899999964
No 43
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=31.64 E-value=17 Score=20.78 Aligned_cols=13 Identities=46% Similarity=1.007 Sum_probs=11.1
Q ss_pred eCCccCCCCCCCC
Q psy10828 27 LGGTRTGPDEPPA 39 (245)
Q Consensus 27 ~~~~~~~~~~~~~ 39 (245)
||.++||+.|||.
T Consensus 3 lgspntgakqpps 15 (26)
T 2jmf_B 3 LGSPNTGAKQPPS 15 (26)
T ss_pred CCCCCCCCCCCCC
Confidence 6889999999975
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=23.22 E-value=48 Score=30.45 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=30.8
Q ss_pred ecceeeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 116 NTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 116 ~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
+.++.||+|+|... .+++.|++|||.++.+ ..++.+.-..|-.+.+.
T Consensus 269 ~~~v~vI~atn~~~------------~ld~al~rRf~~~i~i-~~P~~~~r~~il~~~l~ 315 (444)
T 2zan_A 269 NDGILVLGATNIPW------------VLDSAIRRRFEKRIYI-PLPEAHARAAMFRLHLG 315 (444)
T ss_dssp CSSCEEEEEESCGG------------GSCHHHHTTCCEEEEC-CCCCHHHHHHHHHHHHT
T ss_pred CCCEEEEecCCCcc------------ccCHHHHhhcceEEEe-CCcCHHHHHHHHHHHHh
Confidence 45788999999762 2558899999987765 44554444444444443
No 45
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.90 E-value=2.4e+02 Score=27.31 Aligned_cols=95 Identities=12% Similarity=0.030 Sum_probs=55.2
Q ss_pred ceeeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhccCCCCCCCCCCCCCCCHHHHHH
Q psy10828 118 RCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQA 197 (245)
Q Consensus 118 r~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~~~~~~~~~~~~~~~l~~e~Lrk 197 (245)
++.+|+++|+... ...+.+.+.|.+||+. +..+.++.+.-..+-.+++..... ...-.++.+.+..
T Consensus 315 ~~~~I~at~~~~~-------~~~~~~d~aL~~Rf~~--i~v~~p~~~e~~~il~~l~~~~~~-----~~~v~~~~~al~~ 380 (758)
T 1r6b_X 315 KIRVIGSTTYQEF-------SNIFEKDRALARRFQK--IDITEPSIEETVQIINGLKPKYEA-----HHDVRYTAKAVRA 380 (758)
T ss_dssp CCEEEEEECHHHH-------HCCCCCTTSSGGGEEE--EECCCCCHHHHHHHHHHHHHHHHH-----HHTCCCCHHHHHH
T ss_pred CeEEEEEeCchHH-------hhhhhcCHHHHhCceE--EEcCCCCHHHHHHHHHHHHHHHHH-----hcCCCCCHHHHHH
Confidence 4668888887510 1223456889999993 455666655444444444432100 0112466777777
Q ss_pred HHHHhhc--cCCCCCHHHHHHHHHHHHHHHh
Q psy10828 198 YFYLIKG--LRPQMTLEANRILTRYYQAQRK 226 (245)
Q Consensus 198 YIayAR~--~~P~LS~EA~~~I~~yY~~lR~ 226 (245)
-..++.. -.+.+++++.+++.+.-...|.
T Consensus 381 ~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~ 411 (758)
T 1r6b_X 381 AVELAVKYINDRHLPDKAIDVIDEAGARARL 411 (758)
T ss_dssp HHHHHHHHCTTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhcccccCchHHHHHHHHHHHHHhc
Confidence 7777764 3556777888888766544443
No 46
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=21.82 E-value=1.4e+02 Score=25.34 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=28.9
Q ss_pred ecceeeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 116 NTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 116 ~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
+.++.+|+++|.... . -.+.+.+++||....+-....+.+.-..+..+.+.
T Consensus 165 ~~~~~~I~~t~~~~~-------~--~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 165 RVWVSLVGITNSLGF-------V--ENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp ---CEEEEECSCSTT-------S--SSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCCch-------H--hhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 467889999986510 0 13457889999864455556655444445444443
No 47
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=20.09 E-value=55 Score=28.99 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=31.2
Q ss_pred ecceeeeeecCCCcccCCCCChhhhccCccCccCccceeEEecCCCChhhhhhhhhhhhc
Q psy10828 116 NTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNYILF 175 (245)
Q Consensus 116 ~ar~sviAa~NP~g~~~~~~~~~~~i~l~~~LLsRFDLi~~l~D~~~~~~D~~ia~hIl~ 175 (245)
+.++.||||+|... .+++.|++|||.++.+ ..++.+.=..+-++.+.
T Consensus 185 ~~~v~vI~atn~~~------------~ld~al~rRf~~~i~i-~~P~~~~r~~il~~~l~ 231 (355)
T 2qp9_X 185 SQGVLVLGATNIPW------------QLDSAIRRRFERRIYI-PLPDLAARTTMFEINVG 231 (355)
T ss_dssp -CCEEEEEEESCGG------------GSCHHHHHTCCEEEEC-CCCCHHHHHHHHHHHHT
T ss_pred CCCeEEEeecCCcc------------cCCHHHHcccCEEEEe-CCcCHHHHHHHHHHHHh
Confidence 35688999999762 3558899999988764 44555444445555554
Done!