RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10828
(245 letters)
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 142 bits (359), Expect = 3e-39
Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 10/147 (6%)
Query: 104 ISFPQAGLVCKLNTRCSIIAACNPK-GHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKS 162
+S +AG+V KLN R ++IAA NPK G Y P+S NI + +LSRFDL+ +L D
Sbjct: 420 VSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPG 479
Query: 163 EQWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAYFYLIKG-LRPQMTLEANRILTRYY 221
E D+ ++NYIL + N D++ L+ Y + + P++T EA ++T ++
Sbjct: 480 E-QDRELANYILDVHSGKSTKNI----IDIDTLRKYIAYARKYVTPKITSEAKNLITDFF 534
Query: 222 QAQRKADMRN---AARTTVRLLESLIR 245
RK T R LE+LIR
Sbjct: 535 VEMRKKSSETPDSPILITPRQLEALIR 561
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
helicase, MCM homolog, DNA replication, ATP-binding,
DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Length = 506
Score = 116 bits (292), Expect = 3e-30
Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 29/150 (19%)
Query: 104 ISFPQAGLVCKLNTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSE 163
++ L N RC+++AA NP G P+ P I + LS FDL+ L
Sbjct: 329 VTVDGIAL----NARCAVLAAINP-GEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRP 383
Query: 164 QWDKMVSNYILFGKRLGPSSNQATSLWDVEKLQAY--FYLIKGLRPQMTLEANRILTRYY 221
+ Q T + L+ Y + + + P++T EA + L +Y
Sbjct: 384 GEPE----------------EQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWY 427
Query: 222 QAQRK------ADMRNAARTTVRLLESLIR 245
+ +R+ T R LES+ R
Sbjct: 428 ETRREEVEERLGMGLPTLPVTRRQLESVER 457
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 40/263 (15%), Positives = 73/263 (27%), Gaps = 74/263 (28%)
Query: 32 TGPDEPPAGPGAVSKA--RG-----PQFG-----------LIEL---------EIFSAAG 64
A+ +A G FG L +L ++ +
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 65 EIFQKKKAIISSVSPQ-KRG--------APKSAGPVAVCHSALWWAKEISFPQAGLVCKL 115
E + +G P + S IS P G++ +L
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-----PISCPLIGVI-QL 246
Query: 116 NTRCSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDSKSEQWDKMVSNY--- 172
+ G + P + + LV + ++++ W+ +
Sbjct: 247 ---AHYVVTAKLLG-FTPG---ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 173 --ILF--GKR---------LGPSSNQATSLWDVEKLQAYFYLIKGLRPQMTLEA-----N 214
+LF G R L PS + SL + E + + I L Q ++ N
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILED-SLENNEGVPSPMLSISNL-TQEQVQDYVNKTN 357
Query: 215 RILTRYYQAQRKADMRNAARTTV 237
L Q + + N A+ V
Sbjct: 358 SHLPAGKQVE--ISLVNGAKNLV 378
Score = 36.6 bits (84), Expect = 0.007
Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 21/135 (15%)
Query: 129 GHYDPNIPISVNIAI-ASPLLSRFDLVLVLLDSKSEQWDKMVSNYILFGKRLG-----PS 182
G + + + AS L +F+ +L D+ + L GK LG
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 183 SNQATSLWDVEKLQ-AYF---YL-----------IKGLRPQMTLEANRILTRYYQAQRKA 227
++ V L F YL + ++ ++ Y A+ A
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 228 DMRNAARTTVRLLES 242
++ L +
Sbjct: 134 KRPFDKKSNSALFRA 148
Score = 28.1 bits (62), Expect = 3.9
Identities = 37/179 (20%), Positives = 50/179 (27%), Gaps = 84/179 (46%)
Query: 44 VSKARGPQFGLIELEIFSAAGEIFQKKKAIISSVSPQKRGAPKSA---------GPVAV- 93
VS GP L L + +K KA S Q R P S PVA
Sbjct: 379 VS---GPPQSLYGLNL------TLRKAKA--PSGLDQSR-IPFSERKLKFSNRFLPVASP 426
Query: 94 CHSAL------------------WWAKEISFPQAGLVCKLNTRCSIIAACNPKGH----Y 131
HS L + AK+I P V +T G
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIP----V--YDTFD---------GSDLRVL 471
Query: 132 DPNIPISVNIAIASPLLSRFDLVLVL-LDSKSEQWDKMV---SNYIL-FG----KRLGP 181
+I + D ++ L + W+ + +IL FG LG
Sbjct: 472 SGSISERI-----------VDCIIRLPVK-----WETTTQFKATHILDFGPGGASGLGV 514
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.78
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 68 QKK--KAIISSVSPQKRGAPKSAGPVAV 93
+K+ K + +S+ K A SA +A+
Sbjct: 18 EKQALKKLQASL---KLYADDSAPALAI 42
>2l3f_A Uncharacterized protein; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Methanosarcina acetivorans}
Length = 166
Score = 27.6 bits (61), Expect = 2.6
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 119 CSIIAACNPKGHYDPNIPISVNIAIASPLLSRFDLVLVLLDS-KSEQWDKMVSNYILFGK 177
+ A + +G D I + L L+ + K+ +++ ++ K
Sbjct: 73 WDVFKAGSREGSQDSKIGDEEINDFSGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETK 132
Query: 178 RLGPSSNQATSLWDVEKLQAYFYLIKGLR 206
L PSS+ A + + + + + L
Sbjct: 133 VL-PSSSGANRRFSKNRESEWEAVFRHLE 160
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase,
farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A
{Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A*
2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A*
2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A*
2z52_A* 2z78_A* 2z7h_A* ...
Length = 340
Score = 27.7 bits (62), Expect = 3.7
Identities = 5/32 (15%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 191 DVEKL-QAYFYLI----KGLRPQMTLEANRIL 217
+ + + Y +++ K R + ++ NR++
Sbjct: 24 NESLISKPYNHILLKPGKNFRLNLIVQINRVM 55
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway,
isopentenyl transferase, structural GENO structural
genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens}
SCOP: a.128.1.1
Length = 301
Score = 27.2 bits (61), Expect = 5.3
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 195 LQAYFYLI----KGLRPQMTLEANRIL 217
L+ Y YL+ K +R +++ N L
Sbjct: 14 LEPYKYLLQLPGKQVRTKLSQAFNHWL 40
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA
export, nuclear hydrolase; HET: IHP; 2.50A
{Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B*
3rrm_B* 3rrn_B*
Length = 297
Score = 26.2 bits (57), Expect = 9.9
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 71 KAIISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAG--LVCKLNTRC 119
KA++ + R P+SA P+ L FP+ + +L +C
Sbjct: 92 KAVVHQAETEVRVKPESALPLGKLTLYLLV----QFPELQELFMARLVKKC 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,626,496
Number of extensions: 208264
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 11
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)