RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10828
         (245 letters)



>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 459

 Score = 25.8 bits (56), Expect = 4.9
 Identities = 12/62 (19%), Positives = 23/62 (37%)

Query: 64  GEIFQKKKAIISSVSPQKRGAPKSAGPVAVCHSALWWAKEISFPQAGLVCKLNTRCSIIA 123
            E+   +    SS+ P K    ++     VC   +     I+F  +    +LN    ++ 
Sbjct: 306 HELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMI 365

Query: 124 AC 125
           A 
Sbjct: 366 AN 367


>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia
           coli [TaxId: 562]}
          Length = 147

 Score = 24.9 bits (54), Expect = 6.6
 Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 5/40 (12%)

Query: 196 QAYFYLIKGLRPQMTLE-----ANRILTRYYQAQRKADMR 230
            A FYL+        L         I    +++ ++  + 
Sbjct: 3   NATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIA 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 867,844
Number of extensions: 37781
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)