BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10829
(545 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JG0|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
1- Thiatrehazolin
pdb|2JJB|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|B Chain B, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|C Chain C, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|D Chain D, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2WYN|A Chain A, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|B Chain B, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|C Chain C, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|D Chain D, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
Length = 535
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 169/552 (30%), Positives = 257/552 (46%), Gaps = 63/552 (11%)
Query: 2 ASLFPDSKTFVDMKLKHTPDTTWRMFNELMNQTENRPSRSELEQFVNETFDEAGSEFEDW 61
A LFPD KTF D P + NQ S +L FVN F E E +
Sbjct: 24 AKLFPDQKTFADAVPNSDPLMILADYRMQQNQ-----SGFDLRHFVNVNF-TLPKEGEKY 77
Query: 62 SPSDWVESPRFLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQDQYSIIYVPHPVIV 121
P + Q ++ LW L R ++ + S++ +P P +V
Sbjct: 78 VPPE---------------GQSLREHIDGLWPVLTRSTENTEKWD----SLLPLPEPYVV 118
Query: 122 PGGRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYGFIPNGGRVYYAMRSQP 181
PGGRFRE YYWDSY+ + GL S + V M+ NF ++ YG IPNG R YY RSQP
Sbjct: 119 PGGRFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQP 178
Query: 182 PLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWMNN-----------RTTKVEKDGQFY 230
P MV+ D L + + ++KE+ +WM+ R K++ DG
Sbjct: 179 PFFALMVELLAQHEGDAA-LKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQ-DGTLL 236
Query: 231 NLCQFKEFSSGPRPESYREDVTSAQIFRSEVEKEAHYSELKSAAESGWDFSSRWFVLNGT 290
N ++ + PRPES+ ED+ +A+ + E Y +L+SAA SGWDFSSRW
Sbjct: 237 N--RYWDDRDTPRPESWVEDIATAKSNPNRPATEI-YRDLRSAAASGWDFSSRWM----- 288
Query: 291 NKGKSGEGNLTNLKARSIVPVDLNAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLEA 350
L L+ SIVPVDLN++++ +L++ G + Y +A +
Sbjct: 289 ----DNPQQLNTLRTTSIVPVDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKG 344
Query: 351 VTKVLWHDEVGVWLDYDISNEIKRDYFYPSNLSPLWTGCYNQSDTEHYISKVMKYLEKTQ 410
+ K LW+D+ G + DYD+ + R+ + L PL+ + + +L
Sbjct: 345 IEKYLWNDQQGWYADYDLKSHKVRNQLTAAALFPLYVNAAAKDRANKMATATKTHL---- 400
Query: 411 IMVNLGGIPTTLEHSGEQWDYPNAWPPLQYIMIMGLHSTNDKWAQDLAYEMTERWVRANF 470
+ GG+ TT SG+QWD PN W PLQ++ GL + K ++A +++ ++
Sbjct: 401 --LQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQK---EVAMDISWHFLTNVQ 455
Query: 471 KAFNETHAMYEKYDATVPXXXXXXXEYEIQLGFGWTNGVIMELLDKFSDRLSLEDKFVDL 530
++ + EKYD + EY +Q GFGWTNGV +++LD + E ++
Sbjct: 456 HTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLDLICPK---EQPCDNV 512
Query: 531 PAPQRPGYSAST 542
PA RP ++T
Sbjct: 513 PA-TRPTVKSAT 523
>pdb|2JF4|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Validoxylamine
Length = 535
Score = 231 bits (589), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 166/553 (30%), Positives = 250/553 (45%), Gaps = 62/553 (11%)
Query: 2 ASLFPDSKTFVDMKLKHTPDTTWRMFNELMNQTENRPSRSELEQFVNETFDEAGSEFEDW 61
A LFPD KTF D P + NQ S +L FVN F E E +
Sbjct: 24 AKLFPDQKTFADAVPNSDPLXILADYRXQQNQ-----SGFDLRHFVNVNF-TLPKEGEKY 77
Query: 62 SPSDWVESPRFLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQDQYSIIYVPHPVIV 121
P + Q ++ LW L R ++ + S++ +P P +V
Sbjct: 78 VPPE---------------GQSLREHIDGLWPVLTRSTENTEKWD----SLLPLPEPYVV 118
Query: 122 PGGRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYGFIPNGGRVYYAMRSQP 181
PGGRFRE YYWDSY+ GL S + V + NF ++ YG IPNG R YY RSQP
Sbjct: 119 PGGRFREVYYWDSYFTXLGLAESGHWDKVADXVANFAHEIDTYGHIPNGNRSYYLSRSQP 178
Query: 182 PLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWMNN-----------RTTKVEKDGQFY 230
P V+ D L + + +KE+ +W + R K++ DG
Sbjct: 179 PFFALXVELLAQHEGDAA-LKQYLPQXQKEYAYWXDGVENLQAGQQEKRVVKLQ-DGTLL 236
Query: 231 NLCQFKEFSSGPRPESYREDVTSAQIFRSEVEKEAHYSELKSAAESGWDFSSRWFVLNGT 290
N ++ + PRPES+ ED+ +A+ + E Y +L+SAA SGWDFSSRW
Sbjct: 237 N--RYWDDRDTPRPESWVEDIATAKSNPNRPATEI-YRDLRSAAASGWDFSSRW------ 287
Query: 291 NKGKSGEGNLTNLKARSIVPVDLNAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLEA 350
L L+ SIVPVDLN++ + +L++ G + Y +A +
Sbjct: 288 ---XDNPQQLNTLRTTSIVPVDLNSLXFKXEKILARASKAAGDNAXANQYETLANARQKG 344
Query: 351 VTKVLWHDEVGVWLDYDISNEIKRDYFYPSNLSPLWTGCYNQSDTEHYISKVMKYLEKTQ 410
+ K LW+D+ G + DYD+ + R+ + L PL+ + + +L
Sbjct: 345 IEKYLWNDQQGWYADYDLKSHKVRNQLTAAALFPLYVNAAAKDRANKXATATKTHL---- 400
Query: 411 IMVNLGGIPTTLEHSGEQWDYPNAWPPLQYIMIMGLHSTNDKWAQDLAYEMTERWVRANF 470
+ GG+ TT SG+QWD PN W PLQ++ GL + K ++A +++ ++
Sbjct: 401 --LQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQK---EVAXDISWHFLTNVQ 455
Query: 471 KAFNETHAMYEKYDATVPXXXXXXXEYEIQLGFGWTNGVIMELLDKFSDRLSLEDKFVDL 530
++ + EKYD + EY +Q GFGWTNGV ++ LD + E ++
Sbjct: 456 HTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKXLDLICPK---EQPCDNV 512
Query: 531 PAPQRPGYSASTM 543
PA + SA+T
Sbjct: 513 PATRPTVKSATTQ 525
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 198 LQFLNESIDTLEKEFLFWMNNRTT-----------KVEKDGQFYNLCQFKEFSSGPRPES 246
L+++N + D ++ + N R T +V D + C+F ++GP S
Sbjct: 90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSAS 149
Query: 247 YREDVTSAQIFRSEVEKEAHYSELKSAAESGWDFSSRWFVLNGTN 291
D+ F+ E + + A G DF+ + + GT
Sbjct: 150 RMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTG 194
>pdb|3NOE|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa
pdb|3NOE|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa
pdb|3PS7|A Chain A, Biochemical Studies And Crystal Structure Determination Of
Dihydrodipicolinate Synthase From Pseudomonas Aeruginosa
pdb|3PS7|B Chain B, Biochemical Studies And Crystal Structure Determination Of
Dihydrodipicolinate Synthase From Pseudomonas Aeruginosa
pdb|3PUO|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa(Psdhdps)complexed With L-Lysine
At 2.65a Resolution
pdb|3PUO|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa(Psdhdps)complexed With L-Lysine
At 2.65a Resolution
pdb|3S8H|A Chain A, Structure Of Dihydrodipicolinate Synthase Complexed With
3- Hydroxypropanoic Acid(Hpa)at 2.70 A Resolution
pdb|3S8H|B Chain B, Structure Of Dihydrodipicolinate Synthase Complexed With
3- Hydroxypropanoic Acid(Hpa)at 2.70 A Resolution
Length = 292
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 185 IPMVKSYIDATNDLQFLNESIDTLEKEFLFWMNNRTTKVE 224
+P + +AT DLQ E I+ + K+FL + + T VE
Sbjct: 154 VPNIIGIKEATGDLQRAKEVIERVGKDFLVYSGDDATAVE 193
>pdb|3QZE|A Chain A, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
pdb|3QZE|B Chain B, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
pdb|3QZE|C Chain C, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
pdb|3QZE|D Chain D, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
Length = 314
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 185 IPMVKSYIDATNDLQFLNESIDTLEKEFLFWMNNRTTKVE 224
+P + +AT DLQ E I+ + K+FL + + T VE
Sbjct: 176 VPNIIGIKEATGDLQRAKEVIERVGKDFLVYSGDDATAVE 215
>pdb|1FMM|S Chain S, Solution Structure Of Nfgf-1
Length = 132
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 50 TFDEAGSEFEDWSPSDWVESPRFLSKIKDKNFQEWASQLNALWK-FLG----RKMKDDVR 104
D G + SPS E FL ++++ N+ + S+++A F+G K K R
Sbjct: 58 AMDSDGQLYASQSPS---EECLFLERLEENNYNTYKSKVHADKDWFVGIKKNGKTKPGSR 114
Query: 105 LHQDQYSIIYVPHPV 119
H Q +I+++P PV
Sbjct: 115 THFGQKAILFLPLPV 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,877,227
Number of Sequences: 62578
Number of extensions: 785422
Number of successful extensions: 1665
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1648
Number of HSP's gapped (non-prelim): 9
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)