RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10829
(545 letters)
>gnl|CDD|216362 pfam01204, Trehalase, Trehalase. Trehalase (EC:3.2.1.28) is known
to recycle trehalose to glucose. Trehalose is a
physiological hallmark of heat-shock response in yeast
and protects of proteins and membranes against a variety
of stresses. This family is found in conjunction with
pfam07492 in fungi.
Length = 509
Score = 638 bits (1648), Expect = 0.0
Identities = 238/518 (45%), Positives = 322/518 (62%), Gaps = 11/518 (2%)
Query: 3 SLFPDSKTFVDMKLKHTPDTTWRMFNELMNQTENRPSRSELEQFVNETFDEAGSEFEDWS 62
LFPDSKTFVDM LK+ P+ R+F R + +L FV++ FDE G E +
Sbjct: 1 KLFPDSKTFVDMPLKNDPNRILRLFRAQFWDLTRRITGFDLRAFVDDNFDEPGDELRIYV 60
Query: 63 PSDWVESPRFLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQDQYSIIYVPHPVIVP 122
P DW E P FL+KI+D + + WA L+ALW L RK+K V L + S++ VP+P +VP
Sbjct: 61 PPDWKEQPEFLAKIEDPSLRLWAEHLHALWPALVRKVKKKVGLLPEASSLLPVPNPFVVP 120
Query: 123 GGRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYGFIPNGGRVYYAMRSQPP 182
GGRFREFYYWDSYWII GL+ S M T +GM+ NF+ ++++YGFIPNG R YY RSQPP
Sbjct: 121 GGRFREFYYWDSYWIILGLLASGMHDTARGMVENFIYLIDKYGFIPNGNRSYYLNRSQPP 180
Query: 183 LLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWM-NNRTTKVEKDGQFYNLCQFKEFSSG 241
L MV Y + T D + + L+KE+ FWM R V Y L ++ +
Sbjct: 181 FLTLMVLLYYEKTEDDALVRRYLPALKKEYAFWMAEPRLDPVTGLSDGYLLNRYGDPPET 240
Query: 242 PRPESYREDVTSAQIFRSEVEKEAHYSELKSAAESGWDFSSRWFVLNGTNKGKSGEGNLT 301
PRPESYREDV +A+ +E K +Y +LKSAAESGWDFSSRWF +G + G L+
Sbjct: 241 PRPESYREDVETAEKLPTERPKAYNYRDLKSAAESGWDFSSRWFRDSGHDT-----GYLS 295
Query: 302 NLKARSIVPVDLNAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLEAVTKVLWHDEVG 361
+++ SIVPVDLNA++Y N +++ FY+ LG S + A+ +A+ K LW++E G
Sbjct: 296 SIRTTSIVPVDLNALLYKNEKIIAFFYDVLGDSETSAIWEERAEARRDAIDKYLWNEEDG 355
Query: 362 VWLDYDISNEIKRDYFYPSNLSPLWTGCYNQSDTEHYISKVMKYLEKTQIMVNLGGIPTT 421
+W DYD+ + R+YF SN PLW G + ++KV+ YLE++ ++V GGIPT+
Sbjct: 356 IWYDYDLKKQKHRNYFSASNFVPLWAGLASPDQAAK-VAKVLPYLERSGLLVYPGGIPTS 414
Query: 422 LEHSGEQWDYPNAWPPLQYIMIMGLHSTNDKWAQDLAYEMTERWVRANFKAFNETHAMYE 481
L SG+QWDYPN W PLQ++ + GL +LA + RW+ N KAF +T M E
Sbjct: 415 LLKSGQQWDYPNGWAPLQHLAVEGLRRYGY---DELAERLAYRWLFTNTKAFVDTGKMVE 471
Query: 482 KYDATVPGGHG-GGGEYEIQLGFGWTNGVIMELLDKFS 518
KYD T G +G GGGEY +Q GFGWTNGV ++LLD +
Sbjct: 472 KYDVTRGGEYGNGGGEYVVQEGFGWTNGVYLDLLDLYG 509
>gnl|CDD|215307 PLN02567, PLN02567, alpha,alpha-trehalase.
Length = 554
Score = 491 bits (1266), Expect = e-169
Identities = 216/530 (40%), Positives = 312/530 (58%), Gaps = 29/530 (5%)
Query: 5 FPDSKTFVDMKLKHTPDTTWRMFNEL-MNQTENRPSRSELEQFVNETFDEAGSEFEDWSP 63
D K +VD+ LK + T + F+ L + ELE+FV E FD AGS+ ++P
Sbjct: 27 TFDPKLYVDLPLKFSLSETEKAFDALPRSNINGSVPVEELEEFVAEYFDVAGSDLLPYTP 86
Query: 64 SDWVESPR-FLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQDQYSIIYVPHPVIVP 122
D+V P FL K+++ +EWA ++++LWK L RK+ D V D+++++ +P+PV+VP
Sbjct: 87 PDFVPEPPGFLPKVENPEAREWALKVHSLWKNLARKVSDSVEERPDRHTLLPLPNPVVVP 146
Query: 123 GGRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYGFIPNGGRVYYAMRSQPP 182
G RFRE YYWDSYW+IRGL+ S+M+ T KG++ N L +V+ YGF+PNG R YY RSQPP
Sbjct: 147 GSRFREVYYWDSYWVIRGLLASKMYETAKGVVENLLYLVDTYGFVPNGARAYYTNRSQPP 206
Query: 183 LLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWMNNRTTKVEKDGQFY--NLCQFKEFSS 240
LL MV + AT D++ + ++ L KE FW + R T +D L ++
Sbjct: 207 LLSAMVLAVYAATKDVELVRRALPALLKEHAFWTSGRHTVTIRDANGVVHVLSRYYAMWD 266
Query: 241 GPRPESYREDVTSAQIFRSEVEKEAHYSELKSAAESGWDFSSRWFVLNGTNKGKSGEGNL 300
PRPES R D A F S EK+ Y ++ SAAESGWDFSSRW +G+ NL
Sbjct: 267 KPRPESSRIDKEVASKFSSSSEKQQLYRDIASAAESGWDFSSRWMR-DGS--------NL 317
Query: 301 TNLKARSIVPVDLNAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLEAVTKVLWHDEV 360
T L+ SI+PVDLNA + ++ F LG + + AK A+ VLW++E+
Sbjct: 318 TTLRTTSILPVDLNAFLLKMELDIAFFAKLLGDKATAERFLKAAKARKRAINAVLWNEEM 377
Query: 361 GVWLDY---DISNEIKRDYF----------YPSNLSPLWTGCYNQSDTEHYISKVMKYLE 407
G WLDY + Y Y SN PLW G D + + KV++ L+
Sbjct: 378 GQWLDYWLPPNGATCQESYTWDAENQNTNVYASNFVPLWCGVVPPGDAK--VEKVVESLK 435
Query: 408 KTQIMVNLGGIPTTLEHSGEQWDYPNAWPPLQYIMIMGLHSTNDKWAQDLAYEMTERWVR 467
+ +V GI T+L ++G+QWD+PNAW PLQ++++ GL ++ K + LA ++ RW+R
Sbjct: 436 SSG-LVLPAGIATSLRNTGQQWDFPNAWAPLQHMIVEGLAASGSKEGKALAEDIARRWLR 494
Query: 468 ANFKAFNETHAMYEKYDATVPGGHGGGGEYEIQLGFGWTNGVIMELLDKF 517
+N+ A+ +T AM+EKYDA G GGGGEY Q GFGW+NGV++ LL++F
Sbjct: 495 SNYVAYKKTGAMHEKYDARYCGEVGGGGEYIPQTGFGWSNGVVLSLLEEF 544
>gnl|CDD|224541 COG1626, TreA, Neutral trehalase [Carbohydrate transport and
metabolism].
Length = 558
Score = 306 bits (786), Expect = 1e-97
Identities = 164/530 (30%), Positives = 238/530 (44%), Gaps = 59/530 (11%)
Query: 7 DSKTFVDMKLKHTPDTTWRMFNELMNQTENRPSRSELEQFVNETFDEAGSEFEDWSPSDW 66
D+K F D K D N + L ++ E S E + S +
Sbjct: 67 DAKLFPDHK--TFLDEAPSNENPVN----------ILSRYRMEKDWPGFSLREFVNNSFF 114
Query: 67 VESPRFLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQDQYSIIYVP-HPVIVPGGR 125
+ P SK Q ++ LW L R+ V + S++ +P +P +VPGGR
Sbjct: 115 L--PESTSKYDPPEQQSLYEHIDQLWPALTRE----VEDLPKESSLLPLPGYPYVVPGGR 168
Query: 126 FREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYGFIPNGGRVYYAMRSQPPLLI 185
F E YYWDSY+ + GL S + KGM+ NF +E YG IPNG R YY RSQPP
Sbjct: 169 FNELYYWDSYFTMLGLAESGRWDLAKGMVDNFAYEIETYGHIPNGNRTYYLSRSQPPFFA 228
Query: 186 PMVKSYIDATNDLQFLNESIDTLEKEFLFWM----------NNRTTKVEKDGQFYN-LCQ 234
MV+ + L + L KE+ +WM DG L +
Sbjct: 229 LMVELVAEHEGV-AALKRYLPALIKEYAYWMDGVPSLQPKQGYSRVVTLGDGSPPEVLNR 287
Query: 235 FKEFSSGPRPESYREDVTSAQIFRSEVEKEAH--YSELKSAAESGWDFSSRWFVLNGTNK 292
+ + PR ESY E + + E+ Y + ++ ESGWDFSSRW +
Sbjct: 288 YWDDRDTPRQESYHETI---ATAKHNPERPLDEIYRDDRAGRESGWDFSSRWLGVPAP-- 342
Query: 293 GKSGEGNLTNLKARSIVPVDLNAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLEAVT 352
L +++ SI+PVDLNA++Y ++++ G + Y A+ A+
Sbjct: 343 -------LASIRTTSILPVDLNALLYKLEEIIANISAIKGDKETAERYQRKAEARRCAIN 395
Query: 353 KVLWHDEVGVWLDYDISNEIKRDYFYPSNLSPLWTGCYN--QSDTEHYISKVMKYLEKTQ 410
K LW DE G + DYD + +R Y + L PLW G ++ + M
Sbjct: 396 KYLWDDEAGQYNDYDWKLKKRRAYLSAAALWPLWVGLATPERAQRLADAALSM------- 448
Query: 411 IMVNLGGIPTTLEHSGEQWDYPNAWPPLQYIMIMGLHSTNDKWAQDLAYEMTERWVRANF 470
+ GG+ + SG+QWDYPN W PLQ+I GL LA ++ RW+
Sbjct: 449 -LEQPGGLSASTPRSGQQWDYPNGWAPLQWIATQGLKRYGYD---ILADDIARRWLTNVE 504
Query: 471 KAFNETHAMYEKYDATVP-GGHGGGGEYEIQLGFGWTNGVIMELLDKFSD 519
+ ++ + EKYD + G GGGGEY +Q GFGWTNGV+++LLD +
Sbjct: 505 QFYDYEGKLVEKYDVSRGTGPGGGGGEYPLQDGFGWTNGVVLKLLDLYGP 554
>gnl|CDD|237326 PRK13271, treA, trehalase; Provisional.
Length = 569
Score = 268 bits (686), Expect = 9e-83
Identities = 169/525 (32%), Positives = 255/525 (48%), Gaps = 59/525 (11%)
Query: 2 ASLFPDSKTFVDMKLKHTPDTTWRMFNELMNQTENRPSRSELEQFVNETFDEAGSEFEDW 61
A LFPD KTF D P + NQ S +L FVN F E E +
Sbjct: 58 AKLFPDQKTFADAVPNSDPLMILADYRMQQNQ-----SGFDLRHFVNVNFTLPK-EGEKY 111
Query: 62 SPSDWVESPRFLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQDQYSIIYVPHPVIV 121
P + ++ +E ++ LW L R ++ + S++ +P P +V
Sbjct: 112 VPP------------EGQSLRE---HIDGLWPVLTRSTENTEKWD----SLLPLPEPYVV 152
Query: 122 PGGRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYGFIPNGGRVYYAMRSQP 181
PGGRFRE YYWDSY+ + GL S + V M+ NF ++ +G IPNG R YY RSQP
Sbjct: 153 PGGRFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTWGHIPNGNRSYYLSRSQP 212
Query: 182 PLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWM-----------NNRTTKVEKDGQFY 230
P MV+ D L + + ++KE+ +WM R K++ DG
Sbjct: 213 PFFALMVELLAQHEGD-AALKQYLPQMQKEYAYWMEGVENLQPGQQEKRVVKLQ-DGTLL 270
Query: 231 NLCQFKEFSSGPRPESYREDVTSAQIFRSEVEKEAHYSELKSAAESGWDFSSRWFVLNGT 290
N ++ + PRPES+ ED+ +A+ + E Y +L+SAA SGWDFSSRW
Sbjct: 271 N--RYWDDRDTPRPESWVEDIATAKSNPNRPATEI-YRDLRSAAASGWDFSSRWM----- 322
Query: 291 NKGKSGEGNLTNLKARSIVPVDLNAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLEA 350
L ++ SIVPVDLNA+++ +L++ G + Y +A +A
Sbjct: 323 ----DNPQQLNTIRTTSIVPVDLNALMFKMEKILARASKAAGDNAMANQYETLANARQKA 378
Query: 351 VTKVLWHDEVGVWLDYDISNEIKRDYFYPSNLSPLWTGCYNQSDTEHYISKVMKYLEKTQ 410
+ K LW+D+ G + DYD+ + R+ + L PL+ + + +L +
Sbjct: 379 IEKYLWNDKEGWYADYDLKSHKVRNQLTAAALFPLYVNAAAKDRANKVAAATKTHLLQP- 437
Query: 411 IMVNLGGIPTTLEHSGEQWDYPNAWPPLQYIMIMGLHSTNDKWAQDLAYEMTERWVRANF 470
GG+ TT SG+QWD PN W PLQ++ GL + +++A ++T R++
Sbjct: 438 -----GGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDVTWRFLTNVQ 489
Query: 471 KAFNETHAMYEKYDATVPGGHGGGGEYEIQLGFGWTNGVIMELLD 515
++ + EKYD + G GGGGEY +Q GFGWTNGV +++LD
Sbjct: 490 HTYDREKKLVEKYDVSSTGTGGGGGEYPLQDGFGWTNGVTLKMLD 534
>gnl|CDD|183936 PRK13272, treA, trehalase; Provisional.
Length = 542
Score = 265 bits (679), Expect = 5e-82
Identities = 169/527 (32%), Positives = 251/527 (47%), Gaps = 68/527 (12%)
Query: 4 LFPDSKTFVDMKLKHTPDTTWRMFNELMNQTENRPSRSELEQFVNETFDEAGSEFEDWSP 63
LF D K FVD P + + + Q E P +L +FV+ F+E SP
Sbjct: 61 LFDDQKHFVDALPLRDPA---LINADYLAQHE-HPG-FDLRKFVDANFEE--------SP 107
Query: 64 SDWVESPRFLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQDQY----SIIYVPHPV 119
++ R + + ++ALW L R Q+Q S++ +PHP
Sbjct: 108 PVQTDAIRQDTAL--------REHIDALWPKLVR--------SQEQVPAHSSLLALPHPY 151
Query: 120 IVPGGRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYGFIPNGGRVYYAMRS 179
+VPGGRFRE YYWDSY+ + GL+ S + ML NF +++ YG IPNG R YY RS
Sbjct: 152 VVPGGRFREVYYWDSYFTMLGLVKSGQTTLSRQMLDNFAYLIDTYGHIPNGNRTYYLSRS 211
Query: 180 QPPLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWM--------NNRTTKVEK--DGQF 229
QPP MV+ D + + L+KE+ +WM V + DG
Sbjct: 212 QPPFFSYMVELQAGVEGDAAY-QRYLPQLQKEYAYWMQGSDDLQPGQAARHVVRLADGSL 270
Query: 230 YNLCQFKEFSSGPRPESYREDVTSAQIFRSEVEKEAHYSELKSAAESGWDFSSRWFVLNG 289
N ++ + PRPE++ D +A + E Y +L++ AESGWD+SSRW
Sbjct: 271 LN--RYWDERDTPRPEAWLHDTRTAAEAKDRPAAEV-YRDLRAGAESGWDYSSRWL---- 323
Query: 290 TNKGKSGEGNLTNLKARSIVPVDLNAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLE 349
GK L +++ +IVPVDLN+++Y L+Q + G S Y+ +A++ +
Sbjct: 324 -ADGK----TLASIRTTAIVPVDLNSLLYHLERTLAQACASSGLAACSQDYAALAQQRKQ 378
Query: 350 AVTKVLWHDEVGVWLDYDISNEIKRDYFYPSNLSPLWTGCYNQSDTEHYISKVMKYLEKT 409
A+ LW+ G + DYD + + L PL+ G + + V L
Sbjct: 379 AIDAHLWNPA-GYYADYDWQTRTLSEQVTAAALYPLFAGLASDDRAKRTADSVRAQL--- 434
Query: 410 QIMVNLGGIPTTLEHSGEQWDYPNAWPPLQYIMIMGLHSTNDKWAQD-LAYEMTERWVRA 468
+ GG+ TT +G+QWD PN W PLQ++ + GL ++ +D LA + ER++
Sbjct: 435 ---LRPGGLATTALKTGQQWDEPNGWAPLQWVAVDGLR----RYGEDALARTIGERFLAQ 487
Query: 469 NFKAFNETHAMYEKYDATVPGGHGGGGEYEIQLGFGWTNGVIMELLD 515
F H + EKY GGGGEY +Q GFGWTNGV + LL+
Sbjct: 488 VQALFAREHKLVEKYGLDGNAAGGGGGEYALQDGFGWTNGVTLMLLN 534
>gnl|CDD|183934 PRK13270, treF, trehalase; Provisional.
Length = 549
Score = 262 bits (671), Expect = 9e-81
Identities = 166/526 (31%), Positives = 245/526 (46%), Gaps = 62/526 (11%)
Query: 1 MASLFPDSKTFVDMKLKHTPDTTWRMFNELMNQTENRPSRS-ELEQFVNETFDEAGSEFE 59
+ +FPDSKTF D K P L+ + R R +L +FV F
Sbjct: 68 SSKIFPDSKTFPDCAPKMDPLDI------LIRYRKVRRHRDFDLRKFVENHFW-----LP 116
Query: 60 DWSPSDWVESPRFLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQDQYSIIYVPHPV 119
+ S++V P + +E ++ LW L R+ +D H S++ +P
Sbjct: 117 EVYSSEYVSDP-------QNSLKE---HIDQLWPVLTREPQD----HIPWSSLLALPQSY 162
Query: 120 IVPGGRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYGFIPNGGRVYYAMRS 179
IVPGGRF E YYWDSY+ + GL S +K M NF ++E YG IPNG R YY RS
Sbjct: 163 IVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYYLSRS 222
Query: 180 QPPLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWMNNRTTKVEK----------DGQF 229
QPP+ MV+ + + ++ +D L+ E+ FWM+ + + DG
Sbjct: 223 QPPVFALMVELF--EEDGVRGARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGSL 280
Query: 230 YNLCQFKEFSSGPRPESYREDVTSAQIFRSEVEKEAHYSELKSAAESGWDFSSRWFVLNG 289
N ++ + PR ES+ EDV +A+ S Y +L++ A SGWD+SSRW
Sbjct: 281 LN--RYWDDRDTPRDESWLEDVETAK--HSGRPPNEVYRDLRAGAASGWDYSSRWL---- 332
Query: 290 TNKGKSGEGNLTNLKARSIVPVDLNAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLE 349
G L +++ +P+DLNA +Y ++ G+ + A +
Sbjct: 333 -----RDTGRLASIRTTQFIPIDLNAFLYKLESAIANISALKGEKETEALFRQKASARRD 387
Query: 350 AVTKVLWHDEVGVWLDYDISNEIKRDYFYPSNLSPLWTGCYNQSDTEHYISKVMKYLEKT 409
AV + LW DE G++ DYD E + F + + PL+ G N + + V L
Sbjct: 388 AVNRYLWDDENGIYRDYDWRRE-QLALFSAAAIVPLYVGMANHEQADRLANAVRSRL--- 443
Query: 410 QIMVNLGGIPTTLEHSGEQWDYPNAWPPLQYIMIMGLHSTNDKWAQDLAYEMTERWVRAN 469
+ GGI + +GEQWD PN W PLQ++ I G D L E+ W++
Sbjct: 444 ---LTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGD---DLLGDEIARSWLKTV 497
Query: 470 FKAFNETHAMYEKYD-ATVPGGHGGGGEYEIQLGFGWTNGVIMELL 514
+ + E H + EKY A GGGGEY +Q GFGWTNGV+ L+
Sbjct: 498 NQFYQEHHKLIEKYHIAGGVPREGGGGEYPLQDGFGWTNGVVRRLI 543
>gnl|CDD|225942 COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport
and metabolism].
Length = 641
Score = 36.7 bits (85), Expect = 0.036
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 132 WDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYGFIPN------GGRVYYAMRSQPPLLI 185
D+ GL+L F +G L N L+ E G IP+ G YY PL I
Sbjct: 287 RDTLISALGLLLVGRFELARGTL-NTLARYSEPGKIPHEILLSIPGEPYYNTVDATPLFI 345
Query: 186 PMVKSYIDATNDLQFLNESIDTLE 209
++ +Y+ T D +F+ E ++
Sbjct: 346 YLLGAYLKYTGDTEFIRELWPSVG 369
>gnl|CDD|111339 pfam02433, FixO, Cytochrome C oxidase, mono-heme subunit/FixO. The
bacterial oxidase complex, fixNOPQ or cytochrome cbb3,
is thought to be required for respiration in
endosymbiosis. FixO is a membrane bound mono-heme
constituent of the fixNOPQ complex.
Length = 226
Score = 31.8 bits (73), Expect = 0.69
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 257 FRSEVEKEAHYSELKSAAESGWDFSSRW 284
FR EVE+ HYS AAES +D +W
Sbjct: 73 FRDEVERYGHYSL---AAESMYDHPFQW 97
>gnl|CDD|114894 pfam06202, GDE_C, Amylo-alpha-1,6-glucosidase. This family
includes human glycogen branching enzyme. This enzyme
contains a number of distinct catalytic activities. It
has been shown for the yeast homologue that mutations in
this region disrupt the enzymes
Amylo-alpha-1,6-glucosidase (EC:3.2.1.33).
Length = 367
Score = 31.9 bits (73), Expect = 0.89
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 130 YYWDSYW------IIRGLILSE-MFHTVKGMLGNFLSIVEEYGFIPN----GGRVYYAMR 178
Y W S W + GL+L F + ++ F +G IPN GG Y
Sbjct: 22 YPWFSDWGRDTFIALPGLLLITGRFEEARAIILTFAG-YLRHGLIPNLFPAGGEPRYNTV 80
Query: 179 SQPPLLIPMVKSYIDATNDLQFLNESIDTLE 209
I ++ Y++ T D +FL T++
Sbjct: 81 DASLWFIYAIQKYLEYTGDKEFLRRIYPTIQ 111
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 30.8 bits (70), Expect = 1.3
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 134 SYWIIRGLILSEMFHTVKGMLGNFLSIVEEYG 165
S+ + L + F + +L F++I+E
Sbjct: 101 SHSSAERIALPDAFLALDYILNRFVNILENLV 132
>gnl|CDD|237725 PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II;
Provisional.
Length = 217
Score = 29.8 bits (68), Expect = 2.5
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 257 FRSEVEKEAHYSELKSAAESGWD 279
FR+E E+ HYS A ES +D
Sbjct: 74 FRAETERYGHYSL---AGESVYD 93
>gnl|CDD|225540 COG2993, CcoO, Cbb3-type cytochrome oxidase, cytochrome c subunit
[Energy production and conversion].
Length = 227
Score = 29.7 bits (67), Expect = 2.7
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 257 FRSEVEKEAHYSELKSAAESGWDFSSRW 284
FR+EVE+ HYS A ES +D W
Sbjct: 75 FRAEVERYGHYS---VAGESVYDHPFLW 99
>gnl|CDD|184992 PRK15032, PRK15032, trimethylamine N-oxide reductase cytochrome
c-type subunit; Provisional.
Length = 390
Score = 30.3 bits (68), Expect = 3.0
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 180 QPPLLIPMVKSYIDATNDL--QFLNESIDTLEK 210
PP + MVK ++A+ND+ F+ SIDT EK
Sbjct: 82 IPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEK 114
>gnl|CDD|216552 pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain. This family
includes transposases of Tn3, Tn21, Tn1721, Tn2501,
Tn3926 transposons from E-coli. The specific binding of
the Tn3 transposase to DNA has been demonstrated.
Sequence analysis has suggested that the invariant triad
of Asp689, Asp765, Glu895 (numbering as in Tn3) may
correspond to the D-D-35-E motif previously implicated
in the catalysis of numerous transposases.
Length = 388
Score = 29.0 bits (66), Expect = 6.1
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 314 NAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLEAVTKVLWH 357
NAII WN L + L + V E L ++ + W
Sbjct: 342 NAIILWNTLYLQRALEELRNEGQ-----EVPPEDLARLSPLAWE 380
>gnl|CDD|217943 pfam04180, LTV, Low temperature viability protein. The
low-temperature viability protein LTV1 is involved in
ribosome biogenesis 40S subunit production.
Length = 426
Score = 29.2 bits (65), Expect = 7.0
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 49 ETFDEAGSEFEDWSPSDWVESPRFLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQD 108
DE SP + ++ F+ + + E++ + + +D LH +
Sbjct: 202 GFLDEFEDLSAPGSPQEAMKKHLFVEEETESRNTEYSETSEVM------RRNEDWTLHFE 255
Query: 109 QYSIIY 114
++
Sbjct: 256 RFKKFE 261
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1
and related proteins; solute-binding domain. SMCT1 is a
high-affinity transporter of various monocarboxylates
including lactate and pyruvate, short-chain fatty acids,
ketone bodies, nicotinate and its structural analogs,
pyroglutamate, benzoate and its derivatives, and iodide.
Human SMCT1 (hSMCT1, also called AIT) is encoded by the
tumor suppressor gene SLC5A8. Its expression is under
the control of the C/EBP transcription factor. Its
tumor-suppressive role is related to uptake of butyrate,
propionate, and pyruvate, these latter are inhibitors of
histone deacetylases. SMCT1 is expressed in the colon,
small intestine, kidney, thyroid gland, retina, and
brain. SMCT1 may contribute to the intestinal/colonic
and oral absorption of monocarboxylate drugs. SMCT1 also
mediates iodide transport from thyrocyte into the
colloid lumen in thyroid gland and through transporting
l-lactate and ketone bodies helps maintain the energy
status and the function of neurons. In the kidney its
expression is limited to the S3 segment of the proximal
convoluted tubule (in contrast to the low-affinity
monocarboxylate transporter SMCT2, belonging to a
different family, which is expressed along the entire
length of the tubule). In the retina, SMCT1 and SMCT2
may play a differential role in monocarboxylate
transport in a cell type-specific manner, SMCT1 is
expressed predominantly in retinal neurons and in
retinal pigmented epithelial (RPE) cells. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 541
Score = 28.9 bits (65), Expect = 8.1
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 365 DYDISNEIKRDYFYPSNL--SPLWTGCY--NQSDTEHYISKVMKYLEKTQIMVNLGGIPT 420
D+D N +KR F+ + + WT Y NQS + YIS ++ K + +NL G+
Sbjct: 225 DFD-PNPLKRHTFWTIVIGGTFTWTSIYGVNQSQVQRYISCKTRFHAKLSLYINLVGLWA 283
Query: 421 TL 422
L
Sbjct: 284 IL 285
>gnl|CDD|214889 smart00892, Endonuclease_NS, DNA/RNA non-specific endonuclease. A
family of bacterial and eukaryotic endonucleases share
the following characteristics: they act on both DNA and
RNA, cleave double-stranded and single-stranded nucleic
acids and require a divalent ion such as magnesium for
their activity. An histidine has been shown to be
essential for the activity of the Serratia marcescens
nuclease. This residue is located in a conserved region
which also contains an aspartic acid residue that could
be implicated in the binding of the divalent ion.
Length = 198
Score = 28.1 bits (63), Expect = 8.2
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 365 DYDISNEIKRDYFYPSNLSPLWTGCYNQSDTEHYISKVMKYLEKTQIMVN 414
D+ +S E FY +N+ P G +NQ + + V K L K + V
Sbjct: 72 DHGVSQEAMAATFYLTNIVPQTAG-FNQGNWNRLENYVRKLLAKNKDTVY 120
>gnl|CDD|226875 COG4469, CoiA, Competence protein CoiA-like family, contains a
predicted nuclease domain [General function
prediction only].
Length = 342
Score = 28.5 bits (64), Expect = 8.4
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 87 QLNALWKFLGRKMKDDVRLHQDQYSIIYVPHPVIVPGGRFRE-FYYWDSYWIIRGLILSE 145
QL L R + +L++ +++ +P + VP F E Y Y + +
Sbjct: 234 QLYYLSPKWSRFQQ---KLYEKGENLLNLPKEIGVP---FPEQIYVKTPYPEWQPQLDEL 287
Query: 146 MFHTVKGMLGN-FLSIVEEYGFIP-NGGRVYYAMRSQPPLLIPMVKSYIDATNDLQFL 201
F +K L + + ++ + I N + Y P + M+K Y D + L
Sbjct: 288 KFKQIKKNLTFYYENFLKYFQSIVQNKSKTLY----SPKSYLKMLKQYKDMLESVGIL 341
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.425
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,324,150
Number of extensions: 2748497
Number of successful extensions: 2415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2376
Number of HSP's successfully gapped: 25
Length of query: 545
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 443
Effective length of database: 6,413,494
Effective search space: 2841177842
Effective search space used: 2841177842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)