RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10829
(545 letters)
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside
hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ;
1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A*
2jjb_A* 2wyn_A*
Length = 535
Score = 427 bits (1099), Expect = e-145
Identities = 167/550 (30%), Positives = 254/550 (46%), Gaps = 56/550 (10%)
Query: 1 MASLFPDSKTFVDMKLKHTPDTTWRMFNELMNQTENRPSRSELEQFVNETFDEAGSEFED 60
A LFPD KTF D P + NQ+ +L FVN F E E
Sbjct: 23 NAKLFPDQKTFADAVPNSDPLMILADYRMQQNQSGF-----DLRHFVNVNFTLPK-EGEK 76
Query: 61 WSPSDWVESPRFLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQDQYSIIYVPHPVI 120
+ P + Q ++ LW L R ++ S++ +P P +
Sbjct: 77 YVPPEG---------------QSLREHIDGLWPVLTRSTENTE----KWDSLLPLPEPYV 117
Query: 121 VPGGRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYGFIPNGGRVYYAMRSQ 180
VPGGRFRE YYWDSY+ + GL S + V M+ NF ++ YG IPNG R YY RSQ
Sbjct: 118 VPGGRFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQ 177
Query: 181 PPLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWMNNRTT--------KVEKDGQFYNL 232
PP MV+ D L + + ++KE+ +WM+ +V K L
Sbjct: 178 PPFFALMVELLAQHEGD-AALKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDGTLL 236
Query: 233 CQFKEFSSGPRPESYREDVTSAQIFRSEVEKEAHYSELKSAAESGWDFSSRWFVLNGTNK 292
++ + PRPES+ ED+ +A+ Y +L+SAA SGWDFSSRW
Sbjct: 237 NRYWDDRDTPRPESWVEDIATAKSN-PNRPATEIYRDLRSAAASGWDFSSRWM------- 288
Query: 293 GKSGEGNLTNLKARSIVPVDLNAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLEAVT 352
L L+ SIVPVDLN++++ +L++ G + Y +A + +
Sbjct: 289 --DNPQQLNTLRTTSIVPVDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKGIE 346
Query: 353 KVLWHDEVGVWLDYDISNEIKRDYFYPSNLSPLWTGCYNQSDTEHYISKVMKYLEKTQIM 412
K LW+D+ G + DYD+ + R+ + L PL+ + + +L +
Sbjct: 347 KYLWNDQQGWYADYDLKSHKVRNQLTAAALFPLYVNAAAKDRANKMATATKTHLLQP--- 403
Query: 413 VNLGGIPTTLEHSGEQWDYPNAWPPLQYIMIMGLHSTNDKWAQDLAYEMTERWVRANFKA 472
GG+ TT SG+QWD PN W PLQ++ + +++A +++ ++
Sbjct: 404 ---GGLNTTSVKSGQQWDAPNGWAPLQWVATE---GLQNYGQKEVAMDISWHFLTNVQHT 457
Query: 473 FNETHAMYEKYDATVPGGHGGGGEYEIQLGFGWTNGVIMELLDKFSDRLSLEDKFVDLPA 532
++ + EKYD + G GGGGEY +Q GFGWTNGV +++LD + D ++PA
Sbjct: 458 YDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLDLICPKEQPCD---NVPA 514
Query: 533 PQRPGYSAST 542
+ SA+T
Sbjct: 515 TRPTVKSATT 524
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase,
alpha/alpha barrel, hydrolase; HET: BMA; 1.50A
{Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Length = 761
Score = 191 bits (487), Expect = 4e-53
Identities = 70/586 (11%), Positives = 169/586 (28%), Gaps = 96/586 (16%)
Query: 12 VDMKLKHTPDTTWRMFNELMNQTENRPSRSELEQFVNETFDEAGSEFEDWSPSDWVESPR 71
+ ++ + + + + L + E D + P
Sbjct: 194 SEYQVHKSLPVQTEINGNRFTSKAHINGSTTLYTTYSHLLTAQEVSKEQMQIRDILARP- 252
Query: 72 FLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQDQYSII--------YVPHPVIVPG 123
+ + Q W L + + ++ V + P
Sbjct: 253 --AFYLTASQQRWEEYLKKGLTNPDATPEQTRVAVKAIETLNGNWRSPGGAVKFNTVTPS 310
Query: 124 GRFREF-----YYWDSYWIIRGLILSEM---FHTVKGML-----GNFLSIVEEYGFIPN- 169
R F + WD++ + ++ + ++ GF+P+
Sbjct: 311 VTGRWFSGNQTWPWDTWKQAFAMAHFNPDIAKENIRAVFSWQIQPGDSVRPQDVGFVPDL 370
Query: 170 -----------GGRVYYAMRSQPPLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWMNN 218
G + ++P L V + T D ++ E L +W+ N
Sbjct: 371 IAWNLSPERGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKTWVAEMYPKLVAYHDWWLRN 430
Query: 219 RTTKVEKDGQFYN-----------LCQFKEFSSGPRPESYREDVTSAQIFRSEVEKEAHY 267
R ++ F + + + + + +
Sbjct: 431 RDHNGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDSLEIP 490
Query: 268 SELKSAAESGWDFSSRWFVLNG-------TNKGKSGEGNLTNLKAR-----------SIV 309
+++ ++ ESG D ++ + ++ N GK + + + R
Sbjct: 491 AQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQE 550
Query: 310 PVDLNAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLEAVTKVLWHDEVGVWLDYDIS 369
VD + +Y + L++ LG+ ++ Y +A++ + + ++ + D I
Sbjct: 551 SVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIE 610
Query: 370 NEIKRDYFY----------PSNLSPLWTGCYNQSDTEHYISKVMKYLEKTQIMVNLGGIP 419
++ + P SPL+ G Q++ + V+K + + +
Sbjct: 611 DKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANAD----AVVKVMLDPKEFNTFVPLG 666
Query: 420 TT-----LEHSGEQWDYPNAWPPLQYIMIMGLHSTNDKWAQDLAYEMTERWVRANFKAFN 474
T + W W + + G+ +D A ++ + + R + K
Sbjct: 667 TAALTNPAFGADIYWRGR-VWVDQFWFGLKGMERYGY---RDDALKLADTFFR-HAKGLT 721
Query: 475 ETHAMYEKYDATVPGGHGGGGEYEIQLGFGWTNGVIMELLDKFSDR 520
+ E Y+ G G F W+ + L + F +
Sbjct: 722 ADGPIQENYNPL--TGAQQGAP-----NFSWSAAHLYMLYNDFFRK 760
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized
conserved protein, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus}
Length = 420
Score = 158 bits (400), Expect = 3e-43
Identities = 64/425 (15%), Positives = 122/425 (28%), Gaps = 50/425 (11%)
Query: 117 HPVIVPG-GRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYGFIP------- 168
VP G + + WDS +I G + + +L F G +P
Sbjct: 18 GAFTVPAHGLYPYQWLWDSAFIALGWTQVDWERAWQELLCLFDYGQGPDGMLPHIVFHEQ 77
Query: 169 --------------NGGRVYYAMRSQPPLLIPMVKSYIDATND----LQFLNESIDTLEK 210
+ + +QPP++ +V+ + D + L
Sbjct: 78 SRDYFPGPDVWGREARAQPATSGITQPPVVATVVRYLYEKDPDRDRARERARYLFPKLLA 137
Query: 211 EFLFWMNNRTTKVEKDGQFYNLCQFKEFS-SGPRPESYREDVTSAQIFRSEVEKEAHYSE 269
+ + R + G + ++ + P + V + E H +
Sbjct: 138 FHRWLYHARDPY--RTGLVVIVHPWESGMDNSPAWDKPLSRVPVENLPPYERRDVKHVNP 195
Query: 270 LKSAAESGWDFSSRWFVLNGTNKGKSGEGNLTNLKARSIVPVDLNAIIYWNADLLSQFYN 329
D+ +L + + + +V V NAI+ L
Sbjct: 196 --EERPRKEDYDRYLSLLYLFRRLEYDPREIYRQSPFKVVDVGFNAILQRANRDLYALAV 253
Query: 330 TLGQGNKSLHYSNVAKEWLEAVTKVLWHDEVGVWLDYDISNEIKRDYFYPSNLSPLWTGC 389
L + + E + LW E G + +D+ + PL+ G
Sbjct: 254 LLQEDPYEIEEW---IVRGEVGLEALWDREAGFYFSWDLVAGEPIAVKTSAGFLPLFAGT 310
Query: 390 YNQSDTEHYISKVMKYLEKTQIMVNLGGIPTTLEHSGEQWDYPNAWPPLQYIMIMGLHST 449
+Q + ++ EK + ++ + G W P W + +++ G
Sbjct: 311 PHQGRASLLAQEAERWGEKARYLLPSVDPTSPFFEPGRYWRGPV-WINVNWMVAEGFRDY 369
Query: 450 NDKWAQDLAYEMTERWVRANFKAFNETHAMYEKYDATVPGGHGGGGEYEIQLGFGWTNGV 509
LA + + E E YD G G GGE GF W+ +
Sbjct: 370 GF---AALAARLKADALA-----LMEREGFREYYDPL--TGQGRGGE-----GFSWSAAL 414
Query: 510 IMELL 514
+
Sbjct: 415 ALFWT 419
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 5e-13
Identities = 79/600 (13%), Positives = 167/600 (27%), Gaps = 187/600 (31%)
Query: 9 KTFV-DMKLKHTPDTTWRMFNELMNQTENRPSRSELEQFVNETFDEAGSEFEDW----SP 63
FV + K D + S+ E++ + +G+ W
Sbjct: 27 DAFVDNFDCKDVQDMPKSIL-----------SKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 64 SDWVESPRFLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQDQYSIIYVPHPVIVPG 123
+ V+ +F+ ++ N+ ++ L + K R+ R++ +Q +Y + V
Sbjct: 76 EEMVQ--KFVEEVLRINY-KF---LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 124 GRFREFYYWDSYWIIRGLIL---SEMFHTVKGMLGNF------LSIVEEYGFIPN-GGRV 173
R Y +R +L + G+LG L + Y ++
Sbjct: 130 NVSRL----QPYLKLRQALLELRPAKNVLIDGVLG-SGKTWVALDVCLSYKVQCKMDFKI 184
Query: 174 YY---AMRSQPPLLI-----------PMVKSYIDATNDLQFLNESIDTLEKEFLF----- 214
++ + P ++ P S D +++++ SI + L
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 215 ---------W-------MNNR-----TTKVEKDGQFYNLCQFKEFSSGPRPESYREDVTS 253
N TT+ ++ F + S + D
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EV 303
Query: 254 AQIFRSEVEKEAHYSELKSAAESG------------------WDFSSRWFVLNGTNKGKS 295
+ ++ +L + WD W +N
Sbjct: 304 KSLLLKYLDCRP--QDLPREVLTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTI 358
Query: 296 GEGNLTNLKAR---------SIVPVDLNAI------IYWNA-------DLLSQFYNTLGQ 333
E +L L+ S+ P + I + W ++++ +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHK---- 413
Query: 334 GNKSLHYSNVAKEWLEAVTKVLWHDEVGVWLDYDISNEIKRD--------Y-----FYPS 380
SL ++ + T + ++L+ + E + Y F
Sbjct: 414 --YSL-----VEKQPKESTISI-PS---IYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 381 NLSPLWTGCYNQSDTEHYISKVMKYLEKTQ-------IMVNLGGIPTTLEHSGEQWDYPN 433
+L P + Y +I +K +E + + ++ + + H W+
Sbjct: 463 DLIPPYLDQY----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 434 AWPPL--------QYIMIMGLHSTNDKWAQDLAYEMTERWVRA--NFKAFNETHAMYEKY 483
+ YI ND ER V A +F E + + KY
Sbjct: 519 SILNTLQQLKFYKPYI------CDND--------PKYERLVNAILDFLPKIEENLICSKY 564
Score = 51.8 bits (123), Expect = 5e-07
Identities = 65/492 (13%), Positives = 123/492 (25%), Gaps = 149/492 (30%)
Query: 171 GRVYYAMRSQPPLLIPMVKSYIDATNDLQFL-----NESIDTLEKE--------FLFWM- 216
G Y + + D + E ID + LFW
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 217 -NNRTTKVEK-----DGQFYN--LCQFKEFSSGPRP-----ESYREDV-TSAQIFRS-EV 261
+ + V+K Y + K P R+ + Q+F V
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 262 EKEAHYSELKSAAESGWDFSSRWFVLNG-TNKGKSGEGNLTNLKARSIVPVDLNAI-IYW 319
+ Y +L+ A ++ +++G GK+ + S I+W
Sbjct: 132 SRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKT---WVALDVCLSYKVQCKMDFKIFW 186
Query: 320 --------NADLLSQFYNTLGQGNKSL-----HYSNV--AKEWLEAVTKVLWHDEVG--- 361
+L L Q + + H SN+ ++A + L +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 362 ------VW--------------L----DYDISNEIKRDYFYPSNLSPLWTGCYNQSDTEH 397
V L +++ + +L + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKS 305
Query: 398 YISKVMKYLEKT---QIMVNLGGIPTTLEHSGEQW-DYPNAWPPLQYIMIMGLHSTNDKW 453
+ K + + ++ L P L E D W +++ L + +
Sbjct: 306 LLLKYLDCRPQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 454 AQDL-AYEMTERWVRANFKAFNETHAMYEKYDATVPGGHGGGGEYEIQLGFGWTNGV--- 509
L E R F +++ A +P I L W + +
Sbjct: 363 LNVLEPAEY-----RKMFDRL----SVFPP-SAHIP---------TILLSLIWFDVIKSD 403
Query: 510 ---IMELLDKFS-------------------------DRLSLEDKFV------------D 529
++ L K+S + +L V D
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 530 LPAPQRPGYSAS 541
L P Y S
Sbjct: 464 LIPPYLDQYFYS 475
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 1e-05
Identities = 58/384 (15%), Positives = 111/384 (28%), Gaps = 127/384 (33%)
Query: 106 HQD-QYSIIYVPHPVIVPGGRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEY 164
H ++ ++ VP + +E + G + T ++G FL
Sbjct: 13 HGSLEHVLL-VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL------ 65
Query: 165 GFIPNGGRVYYAMRSQPPLLIPMVKSYIDATNDLQFLNESIDTLEKEFL----------- 213
G++ + +P Q LN + E +L
Sbjct: 66 GYV--------SSLVEPS----------KVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 214 FWMNNRTTKVEKDGQFYNLCQFKEFSSGPRPESYREDVTSAQIFRSEVEKEAHYSELKSA 273
N TT V+ L + +Y +A+I + S L A
Sbjct: 108 LLQENDTTLVKT----KELIK-----------NY----ITARIMAKRPFDKKSNSALFRA 148
Query: 274 AESGWDFSSRWFVLNGTNKGKSGEGNLTNLKARSIVPVDLNAIIYWNADLLSQFYNTLGQ 333
G +++ + G G+GN + Y+ + L Y T
Sbjct: 149 VGEG---NAQLVAIFG------GQGNTDD---------------YF--EELRDLYQT--- 179
Query: 334 GNKSLHYSNVAKEWLEAVTKVLWH----------------DEVGVWLDYDISNEIKRDYF 377
Y + + ++ + L + + WL+ + SN +DY
Sbjct: 180 ------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLE-NPSNTPDKDYL 231
Query: 378 YPSNLS-PLWTGCYNQSDTEHYISKVMKYLEKT--QIMVNLGGIPTTLEH--------SG 426
+S PL G Q HY+ K L T ++ L G +
Sbjct: 232 LSIPISCPL-IGVI-Q--LAHYVV-TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 427 EQWD--YPNAWPPLQYIMIMGLHS 448
+ W+ + + + + +G+
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRC 310
Score = 44.3 bits (104), Expect = 1e-04
Identities = 59/405 (14%), Positives = 116/405 (28%), Gaps = 159/405 (39%)
Query: 27 FNELMNQTENRPSRSEL----EQFVNETFDEAGSEFEDWSPSDWVESPRFLSKIKDKNFQ 82
F EL +L V + + + + +++ + ++ +
Sbjct: 170 FEEL----------RDLYQTYHVLVGDLIKFSAETLSELIRTT-LDAEKVFTQGLN--IL 216
Query: 83 EWASQLNALWKFLGRKMKDDVRLHQDQYSIIYVP--HPVIVPGGRFREFYYWDSYWIIR- 139
EW +++ Y ++ +P P+I Y +
Sbjct: 217 EW--------------LENPSNTPDKDY-LLSIPISCPLIG-------VIQLAHYVVTAK 254
Query: 140 --GLILSEMFHTVKGMLGNFLSIV-----------EEYGFIPNGGRVYYAM-----RSQ- 180
G E+ +KG G+ +V E F + + + R
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES--FFVSVRKAITVLFFIGVRCYE 312
Query: 181 -------PPLLI------------PM----------VKSYIDATNDLQFLNESID-TLEK 210
PP ++ PM V+ Y++ TN + ++ +L
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-- 370
Query: 211 EFLFWMNNRTTKVEKDGQFYNLCQFKEFSSGPRPES-YREDVTSAQIFRSEVEKEAHYSE 269
+N V SGP P+S Y + K
Sbjct: 371 -----VNGAKNLV---------------VSGP-PQSLYG--------LNLTLRKA----- 396
Query: 270 LKSAAESGWD-----FSSRWFVLNGTNKGKSGEGNL-------TNL--KARSIVPVDL-- 313
A SG D FS R K K L ++L A ++ DL
Sbjct: 397 ---KAPSGLDQSRIPFSER--------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 314 NAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLEAVTK--VLW 356
N + + D+ Y+T + + ++++ ++ + + V W
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A
{Clostridium thermocellum}
Length = 811
Score = 37.8 bits (87), Expect = 0.011
Identities = 50/420 (11%), Positives = 104/420 (24%), Gaps = 70/420 (16%)
Query: 106 HQDQYSIIYVPHPVIVPGGRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYG 165
+Q + G R + DS + G + + L + + E G
Sbjct: 334 YQCMVTFNMSRSASYFESGIGRGMGFRDSNQDLLGFVHQI-PERARERLLDLAATQLEDG 392
Query: 166 -----FIPNGGRVYYAMRS----QPPLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWM 216
+ P + + S P LI +YI T D L E +
Sbjct: 393 SAYHQYQPLTKKGNNEIGSNFNDDPLWLILATAAYIKETGDYSILKEQVPFNNDP----- 447
Query: 217 NNRTTKVEKDGQFYNLCQFKEFSSGPRPESYREDVTSAQIFRSEVEKEAHYSELKSAAES 276
+ ++ E + + + H L A
Sbjct: 448 -------------------------SKADTMFEHL-TRSFYHVVNNLGPHGLPLIGRA-- 479
Query: 277 GWDFSSRWFVLNGTNKGKSGEGNLTNLKARSIVPVDLNAIIYWNADLLSQFYNTLGQGNK 336
D++ + + T+ + V + + + + +G +
Sbjct: 480 --DWNDCLNLNCFSTVPDESFQTTTSKDGKVAESVMIAGMFVFIGKDYVKLCEYMGLEEE 537
Query: 337 SLHYSNVAKEWLEAVTKVLW--------HDEVGVWLDYDISNEIKRDYFYPSNLSPLWTG 388
+ EA+ K + +D+ G + + E + + +
Sbjct: 538 ARKAQQHIDAMKEAILKYGYDGEWFLRAYDDFGRKVGSKENEEG-KIFIESQGFCVMAEI 596
Query: 389 CYNQSDTEHYISKVMKYLEKTQIMVNLG-GIPTTLEHSGEQWDYP-------NAWPPLQY 440
+ V KYL+ +V GE YP +
Sbjct: 597 GLEDGKALKALDSVKKYLDTPYGLVLQNPAFTRYYIEYGEISTYPPGYKENAGIFCHNNA 656
Query: 441 IMIMGLHSTNDKWAQDLAYEMTERWVRANFKAFNETH-----AMYEKYDATVPGGHGGGG 495
+I D+A++ + A + ++ H + HG
Sbjct: 657 WIICAETVVGRG---DMAFDYYRKIAPAYIEDVSDIHKLEPYVYAQMVAGKDAKRHGEAK 713
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function
initiative, EFI, lyase; 1.50A {Agrobacterium
tumefaciens}
Length = 372
Score = 33.4 bits (77), Expect = 0.16
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 478 AMYEKYDATV-PGGHGGGG-EYEIQLGFGWTNGVIMELLDKFSDRLSLEDKFVD--LPAP 533
+ + V P H G + + L + I+E + D D P
Sbjct: 293 DLALAHRLPVVP--HAGEMSQVHVHLSYWHPASTILEYIPWIKDHFEEPIHVRDGVYKRP 350
Query: 534 QRPGY 538
++PG
Sbjct: 351 EQPGA 355
>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily,
NYSGXRC, target 9265J, lyase, structural genomics,
PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
Length = 455
Score = 32.7 bits (75), Expect = 0.31
Identities = 15/75 (20%), Positives = 19/75 (25%), Gaps = 18/75 (24%)
Query: 478 AMYEKYDATV-PGGHGGGGEYEIQLGFGWTNGVIME--------------LLDKFSDRLS 522
A+ YD V P H G Y N E D F D
Sbjct: 313 ALAAAYDVPVVP--HASG-PYSYHFQISQPNTPFQEYLANSPDGKSVLPVFGDLFIDEPI 369
Query: 523 LEDKFVDLPAPQRPG 537
++ +PG
Sbjct: 370 PTKGYLTTADLDKPG 384
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide
phosphorylase, transferase; 1.70A {Cellulomonas uda}
PDB: 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A*
3acs_A* 3afj_A*
Length = 822
Score = 32.8 bits (74), Expect = 0.36
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 10/116 (8%)
Query: 99 MKDDVRLHQDQYSIIYVPHPVIVPGGRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFL 158
M + +Q + G R + DS + G + + + +
Sbjct: 334 MVNIWNQYQCMVTFNMSRSASFFETGIGRGMGFRDSNQDLLGFVHLI-PERARERIIDIA 392
Query: 159 SIVEEYG-----FIPNGGRVYYAMRS----QPPLLIPMVKSYIDATNDLQFLNESI 205
S G + P R + S P LI +YI T D L+E +
Sbjct: 393 STQFADGSAYHQYQPLTKRGNNDIGSGFNDDPLWLIAGTAAYIKETGDFSILDEPV 448
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 1.6
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 185 IPMVKSYIDATNDLQFLNESIDTLEKEFLFWMNNRTTKVEKDGQFYNLCQ--FKE 237
+P + ND+ N+ +D L K+ FW + +K +Y Q FK+
Sbjct: 178 LPPNEILFSENNDMDNNNDGVDELNKKCTFW--DAISK-----LYY--VQFFFKQ 223
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase
superfamily fold, galacturonate dehydratase, D-tartr
galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP}
PDB: 3ops_A* 3n4f_A* 3qpe_A*
Length = 392
Score = 29.7 bits (67), Expect = 2.4
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 10/68 (14%)
Query: 478 AMYEKYDATV-PGGHGGGG----EYEIQLGFGWTNGVIMELLDKFSDRLSLED-KFVD-- 529
+ + P H G L N +E D + + + + +
Sbjct: 299 EKLDAHGLRSAP--HCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGE 356
Query: 530 LPAPQRPG 537
+ P PG
Sbjct: 357 IHVPATPG 364
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE PG4; 1.70A
{Silicibacter SP} SCOP: a.152.1.3
Length = 191
Score = 29.0 bits (65), Expect = 2.5
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 157 FLSIVEEYGFIPNGGRVYYAMRSQPPLLIPMVKSYIDATNDLQFLNESIDTLEKE 211
F E+ G +PN V A L ++ NDL + LE+E
Sbjct: 27 FEICQEKLGMVPN---VLKAYAFNVEKL----NAFTAMYNDLMLGESQLSKLERE 74
>2oyo_A Uncharacterized peroxidase-related protein; YP_604910.1,
uncharacterised peroxidase-related, uncharacter
peroxidase-related; 1.51A {Deinococcus geothermalis}
SCOP: a.152.1.3
Length = 196
Score = 28.6 bits (64), Expect = 3.6
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 157 FLSIVEEYGFIPNGGRVYYAMRSQPPLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWM 216
+ GF+PN V+ A ++ + N L + E+E + +
Sbjct: 32 WAKAEANIGFVPN---VFRAQAVNGEQF----LAWWNYFNLLLNKEGYLTNAERELVAVV 84
Query: 217 NNRT 220
+
Sbjct: 85 VSGV 88
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.00A {Mesorhizobium loti}
Length = 188
Score = 28.3 bits (63), Expect = 5.1
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 157 FLSIVEEYGFIPNGGRVYYAMRSQPPLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWM 216
F E+ G +PN V A L +++ D NDL + L++E +
Sbjct: 24 FAKCEEKLGLVPN---VLKAYAFDDKKL----RAFTDIYNDLMLGESGLSKLDREMIAVA 76
Query: 217 NNRT 220
+
Sbjct: 77 VSSI 80
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein;
YP_296737.1, carboxymuconolactone decarboxylase family;
HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Length = 197
Score = 28.3 bits (63), Expect = 5.3
Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 157 FLSIVEEYGFIPNGGRVYYAMRSQPPLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWM 216
L + ++ GF+PN V+ + +P +++ + L + + E+E +
Sbjct: 28 ILEVQDKAGFVPN---VFLTLAHRPDEF----RAFFAYHDALMLKDGGLTKGEREMIVVA 80
Query: 217 NNRT 220
+
Sbjct: 81 TSAA 84
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Listeria monocytogenes str}
Length = 283
Score = 28.4 bits (63), Expect = 6.0
Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 5/114 (4%)
Query: 374 RDYFYPSNLSPLWTGCYNQSDTEHYISKVMKYLEK--TQIMVNLGGIPTTLEHSGEQW-- 429
+ + T SD +Y K+ +K + +++ G E +
Sbjct: 47 FMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIKKKYASDLLI-HIGFEVDYLIGYEDFTR 105
Query: 430 DYPNAWPPLQYIMIMGLHSTNDKWAQDLAYEMTERWVRANFKAFNETHAMYEKY 483
D+ N + P ++ LH + E + + + Y
Sbjct: 106 DFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGGFEQAQLAY 159
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding
Pro RNA complex; 2.60A {Thermus thermophilus} PDB:
3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A
3hjf_A
Length = 685
Score = 28.4 bits (63), Expect = 8.2
Identities = 4/62 (6%), Positives = 13/62 (20%), Gaps = 17/62 (27%)
Query: 391 NQSDTEHYISKVMKYLEKTQIMVNLGGIPTTLEHSGEQWDYPNAWPPLQYIMIMGLHSTN 450
+ + H + ++ G L + +G +
Sbjct: 439 LREEERHRWENAL-----LGLLAKAGLQVVALS------------GAYPAELAVGFDAGG 481
Query: 451 DK 452
+
Sbjct: 482 RE 483
>3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme;
enolase,metal-binding,PSI-II, NYSGXRC, structural
genomics; 2.16A {Marine actinobacterium} PDB: 3msy_A
Length = 398
Score = 28.0 bits (63), Expect = 8.5
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 478 AMYEKYDATVPGGHGGGGEYEIQLGFGWTNGVIMELLDK---------FSDRLSLEDKFV 528
A+ YD + G H + L +G I E ++R L + +
Sbjct: 308 AIATSYDVQM-GHHEEP-QVSTHLLASQPHGTIAECFHPDRDPFWWNMITNRPKLNNGTL 365
Query: 529 DLPAPQRPG 537
L RPG
Sbjct: 366 TL--SDRPG 372
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP;
alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
{Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A*
3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Length = 418
Score = 27.9 bits (62), Expect = 9.5
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 261 VEKEAHYSELKSAAESGWDFSSRWFVLNGTNKGKSGE-----GNLTNLKARSIVPV 311
VE E Y E+K E+ WD W+ G + + GE G LK
Sbjct: 332 VEVEKPYDEIKEILEAIWD----WWDEEGKFRERIGELIWRKGMREFLKVIGREAD 383
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.425
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,668,228
Number of extensions: 517229
Number of successful extensions: 1199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1167
Number of HSP's successfully gapped: 32
Length of query: 545
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 447
Effective length of database: 3,965,535
Effective search space: 1772594145
Effective search space used: 1772594145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.5 bits)