RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10829
(545 letters)
>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA
{Escherichia coli [TaxId: 562]}
Length = 511
Score = 464 bits (1194), Expect = e-160
Identities = 166/542 (30%), Positives = 252/542 (46%), Gaps = 56/542 (10%)
Query: 1 MASLFPDSKTFVDMKLKHTPDTTWRMFNELMNQTENRPSRSELEQFVNETFDEAGSEFED 60
A LFPD KTF D P + N S +L FVN F E E
Sbjct: 17 NAKLFPDQKTFADAVPNSDPLMILADYRMQQN-----QSGFDLRHFVNVNFTL-PKEGEK 70
Query: 61 WSPSDWVESPRFLSKIKDKNFQEWASQLNALWKFLGRKMKDDVRLHQDQYSIIYVPHPVI 120
+ P + Q ++ LW L R ++ + S++ +P P +
Sbjct: 71 YVPPEG---------------QSLREHIDGLWPVLTRSTEN----TEKWDSLLPLPEPYV 111
Query: 121 VPGGRFREFYYWDSYWIIRGLILSEMFHTVKGMLGNFLSIVEEYGFIPNGGRVYYAMRSQ 180
VPGGRFRE YYWDSY+ + GL S + V M+ NF ++ YG IPNG R YY RSQ
Sbjct: 112 VPGGRFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQ 171
Query: 181 PPLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWMNNRTT--------KVEKDGQFYNL 232
PP MV+ D L + + ++KE+ +WM+ +V K L
Sbjct: 172 PPFFALMVELLAQHEGD-AALKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDGTLL 230
Query: 233 CQFKEFSSGPRPESYREDVTSAQIFRSEVEKEAHYSELKSAAESGWDFSSRWFVLNGTNK 292
++ + PRPES+ ED+ +A+ Y +L+SAA SGWDFSSRW
Sbjct: 231 NRYWDDRDTPRPESWVEDIATAKSN-PNRPATEIYRDLRSAAASGWDFSSRWM------- 282
Query: 293 GKSGEGNLTNLKARSIVPVDLNAIIYWNADLLSQFYNTLGQGNKSLHYSNVAKEWLEAVT 352
L L+ SIVPVDLN++++ +L++ G + Y +A + +
Sbjct: 283 --DNPQQLNTLRTTSIVPVDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKGIE 340
Query: 353 KVLWHDEVGVWLDYDISNEIKRDYFYPSNLSPLWTGCYNQSDTEHYISKVMKYLEKTQIM 412
K LW+D+ G + DYD+ + R+ + L PL+ + + +L +
Sbjct: 341 KYLWNDQQGWYADYDLKSHKVRNQLTAAALFPLYVNAAAKDRANKMATATKTHLLQP--- 397
Query: 413 VNLGGIPTTLEHSGEQWDYPNAWPPLQYIMIMGLHSTNDKWAQDLAYEMTERWVRANFKA 472
GG+ TT SG+QWD PN W PLQ++ GL + +++A +++ ++
Sbjct: 398 ---GGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQ---KEVAMDISWHFLTNVQHT 451
Query: 473 FNETHAMYEKYDATVPGGHGGGGEYEIQLGFGWTNGVIMELLDKFSDRLSLEDKFVDLPA 532
++ + EKYD + G GGGGEY +Q GFGWTNGV +++LD + D ++PA
Sbjct: 452 YDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLDLICPKEQPCD---NVPA 508
Query: 533 PQ 534
+
Sbjct: 509 TR 510
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532
{Ralstonia eutropha [TaxId: 106590]}
Length = 190
Score = 29.8 bits (66), Expect = 0.62
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 157 FLSIVEEYGFIPNGGRVYYAMRSQPPLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWM 216
L + ++ GF+PN V+ + +P +++ + L + + E+E +
Sbjct: 23 ILEVQDKAGFVPN---VFLTLAHRPDEF----RAFFAYHDALMLKDGGLTKGEREMIVVA 75
Query: 217 NNRTTKVE 224
+ +
Sbjct: 76 TSAANQCL 83
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465
{Silicibacter sp. tm1040 [TaxId: 292414]}
Length = 190
Score = 28.6 bits (63), Expect = 1.5
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 157 FLSIVEEYGFIPNGGRVYYAMRSQPPLLIPMVKSYIDATNDLQFLNESIDTLEKEFLFWM 216
F E+ G +PN V A L Y NDL + LE+E + +
Sbjct: 26 FEICQEKLGMVPN---VLKAYAFNVEKLNAFTAMY----NDLMLGESQLSKLEREMIAVV 78
Query: 217 NNR 219
+
Sbjct: 79 VSS 81
>d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 99
Score = 26.2 bits (58), Expect = 3.8
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 398 YISKVMKYLEKTQIMVNLGGIPTTLEHSGEQWD 430
Y++ ++ L+K + + G+ T LE E D
Sbjct: 21 YVAAAVEALKKLNVRYEISGMGTLLE--AEDLD 51
>d1lfda_ d.15.1.5 (A:) Ral guanosine-nucleotide exchange factor,
RalGDS {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 87
Score = 25.5 bits (56), Expect = 6.1
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 167 IPNGGRVYYAMRSQPPL 183
IP V+YAM S
Sbjct: 64 IPENANVFYAMNSAANY 80
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus
subtilis [TaxId: 1423]}
Length = 195
Score = 26.4 bits (57), Expect = 8.0
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 79 KNFQEWASQLNALWKFLGRKMKDDVRLHQDQYSIIYVPHPVIVPGGRFREFYYWDSYWII 138
+ + + + ++ + ++ +++ P I+ G E + I+
Sbjct: 98 GLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILEAGENVEVLSEHNGRIV 157
Query: 139 ---RGLILSEMFHTVK----GMLGNFLSIVEEY 164
+G L FH + F+ +VEEY
Sbjct: 158 AAKQGQFLGCSFHPELTEDHRVTQLFVEMVEEY 190
>d1ef5a_ d.15.1.5 (A:) Rgl {Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 25.1 bits (55), Expect = 8.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 167 IPNGGRVYYAMRSQPPL 183
IP+ V+YAM SQ
Sbjct: 64 IPDSANVFYAMNSQVNF 80
>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga
maritima [TaxId: 2336]}
Length = 329
Score = 26.5 bits (57), Expect = 9.1
Identities = 14/177 (7%), Positives = 37/177 (20%), Gaps = 9/177 (5%)
Query: 336 KSLHYSNVAKEWLEAVTKVLWHDEVGVWLDYDISNEIKRDYFYPSNLSPLWTGCYNQSDT 395
S + + + E V K+ + E+ L +T
Sbjct: 49 SSYNLALTISYYFERVLKIRTK--------AIPAGEVAFQKIPDLEERGLAFLFSRTGNT 100
Query: 396 EHYISKVMKYLEKTQIMVNLGGIPTTLEHSGEQWDYPNAWPPLQYIMIMGLHSTNDKWAQ 455
+ ++ + + + +M
Sbjct: 101 TEVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLVFPVREEAIVMTKSFSMILLSLMF 160
Query: 456 DLAYEMTERWVRANFKAFNETHAMYEKYDATVPGGHGGGGEYEIQLGFGWTNGVIME 512
R + + ++ + ++ + LG GV +E
Sbjct: 161 LADKIAGNSTERFSELV-GYSPEFFDISWKVIEKIDLKEHDHFVFLGMSEFFGVSLE 216
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.425
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,184,134
Number of extensions: 105778
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 27
Length of query: 545
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 455
Effective length of database: 1,171,896
Effective search space: 533212680
Effective search space used: 533212680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)