Query psy1083
Match_columns 173
No_of_seqs 113 out of 1092
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 19:34:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0037|consensus 100.0 2.4E-29 5.2E-34 172.0 19.5 166 6-171 56-221 (221)
2 COG5126 FRQ1 Ca2+-binding prot 99.9 1.1E-24 2.4E-29 144.9 16.0 130 7-138 20-156 (160)
3 KOG0027|consensus 99.9 1E-23 2.3E-28 142.2 15.6 132 5-137 6-148 (151)
4 PTZ00184 calmodulin; Provision 99.9 1.4E-20 3E-25 126.5 15.6 131 7-138 11-148 (149)
5 PTZ00183 centrin; Provisional 99.9 2.9E-20 6.4E-25 126.2 16.1 131 7-138 17-154 (158)
6 KOG0028|consensus 99.8 3.4E-19 7.3E-24 116.5 14.3 131 7-138 33-170 (172)
7 KOG0031|consensus 99.8 1.7E-18 3.8E-23 112.5 14.9 127 6-137 31-164 (171)
8 KOG0030|consensus 99.8 2.9E-18 6.4E-23 109.6 12.9 132 4-137 8-150 (152)
9 KOG0044|consensus 99.8 9.1E-18 2E-22 115.6 14.7 145 5-149 24-186 (193)
10 KOG0034|consensus 99.7 1.9E-16 4E-21 109.0 13.7 132 9-145 35-182 (187)
11 KOG0036|consensus 99.7 4.4E-16 9.6E-21 116.0 16.3 150 9-158 16-174 (463)
12 PTZ00183 centrin; Provisional 99.7 4.7E-15 1E-19 100.5 15.2 127 44-172 17-156 (158)
13 KOG0027|consensus 99.7 1.1E-14 2.4E-19 98.2 14.3 126 43-170 7-149 (151)
14 COG5126 FRQ1 Ca2+-binding prot 99.6 2.3E-14 4.9E-19 95.7 15.1 131 39-172 12-158 (160)
15 PTZ00184 calmodulin; Provision 99.6 6E-14 1.3E-18 94.0 15.0 124 44-169 11-147 (149)
16 KOG0044|consensus 99.6 5.8E-13 1.3E-17 91.9 15.3 144 21-169 6-174 (193)
17 KOG0034|consensus 99.5 4.7E-12 1E-16 87.4 14.3 125 46-172 35-177 (187)
18 KOG0028|consensus 99.5 5.2E-12 1.1E-16 83.1 13.3 126 44-171 33-171 (172)
19 KOG4223|consensus 99.4 1.4E-12 2.9E-17 94.9 10.9 157 6-165 76-264 (325)
20 KOG2643|consensus 99.4 1.2E-12 2.7E-17 98.4 9.9 161 7-170 233-453 (489)
21 KOG0377|consensus 99.4 6.7E-12 1.5E-16 94.8 13.1 131 6-138 463-615 (631)
22 KOG4223|consensus 99.4 1.2E-12 2.6E-17 95.2 8.8 125 10-134 166-301 (325)
23 cd05022 S-100A13 S-100A13: S-1 99.4 2.6E-12 5.7E-17 78.4 7.6 68 72-139 6-76 (89)
24 PF13499 EF-hand_7: EF-hand do 99.4 5.3E-12 1.2E-16 73.1 7.6 62 75-136 1-66 (66)
25 KOG0038|consensus 99.4 8.9E-12 1.9E-16 80.8 8.9 120 23-147 55-186 (189)
26 KOG0037|consensus 99.3 1.7E-11 3.6E-16 84.8 9.4 90 8-98 125-216 (221)
27 cd05027 S-100B S-100B: S-100B 99.3 2.3E-11 5E-16 74.3 8.4 68 72-139 6-80 (88)
28 PLN02964 phosphatidylserine de 99.3 5.1E-11 1.1E-15 95.8 12.7 92 7-102 143-243 (644)
29 PF13499 EF-hand_7: EF-hand do 99.3 1.5E-11 3.3E-16 71.2 7.1 62 8-70 1-66 (66)
30 KOG0030|consensus 99.2 1.3E-10 2.9E-15 74.8 9.5 96 73-170 10-116 (152)
31 cd05029 S-100A6 S-100A6: S-100 99.2 1.3E-10 2.9E-15 70.9 8.6 68 72-139 8-80 (88)
32 KOG0031|consensus 99.2 4.1E-10 8.9E-15 73.7 11.2 93 71-169 29-128 (171)
33 cd05022 S-100A13 S-100A13: S-1 99.2 5.6E-11 1.2E-15 72.5 6.7 67 8-74 9-77 (89)
34 KOG0751|consensus 99.2 5.2E-10 1.1E-14 85.8 11.9 166 4-171 30-208 (694)
35 PLN02964 phosphatidylserine de 99.2 3.4E-10 7.3E-15 91.1 11.3 93 72-170 141-243 (644)
36 KOG2562|consensus 99.2 3.7E-10 8E-15 85.9 10.1 155 3-160 170-371 (493)
37 cd05025 S-100A1 S-100A1: S-100 99.2 3.7E-10 8.1E-15 69.7 8.4 67 73-139 8-81 (92)
38 cd05027 S-100B S-100B: S-100B 99.2 5E-10 1.1E-14 68.4 8.7 68 7-74 8-81 (88)
39 cd05026 S-100Z S-100Z: S-100Z 99.1 4.5E-10 9.9E-15 69.4 8.5 68 72-139 8-82 (93)
40 cd05029 S-100A6 S-100A6: S-100 99.1 6.3E-10 1.4E-14 67.9 8.7 66 9-74 12-81 (88)
41 cd05031 S-100A10_like S-100A10 99.1 1.1E-09 2.4E-14 67.9 9.9 68 73-140 7-81 (94)
42 KOG0036|consensus 99.1 2.5E-09 5.5E-14 80.4 13.0 123 43-172 13-148 (463)
43 cd05026 S-100Z S-100Z: S-100Z 99.1 1E-09 2.2E-14 67.8 9.2 67 9-75 12-84 (93)
44 smart00027 EH Eps15 homology d 99.1 7.5E-10 1.6E-14 68.9 8.7 71 72-144 8-78 (96)
45 KOG4251|consensus 99.1 2E-10 4.3E-15 80.9 6.6 162 5-168 99-307 (362)
46 PF13833 EF-hand_8: EF-hand do 99.1 6.1E-10 1.3E-14 61.8 7.1 52 87-138 1-53 (54)
47 cd00052 EH Eps15 homology doma 99.1 7.7E-10 1.7E-14 64.0 7.4 61 77-139 2-62 (67)
48 cd05025 S-100A1 S-100A1: S-100 99.0 3E-09 6.6E-14 65.6 9.0 72 6-77 8-85 (92)
49 smart00027 EH Eps15 homology d 99.0 1.2E-09 2.5E-14 68.0 7.1 69 7-78 10-78 (96)
50 cd00213 S-100 S-100: S-100 dom 99.0 2.2E-09 4.7E-14 65.7 7.9 68 72-139 6-80 (88)
51 cd05023 S-100A11 S-100A11: S-1 99.0 4.1E-09 8.9E-14 64.5 8.6 68 72-139 7-81 (89)
52 cd00051 EFh EF-hand, calcium b 99.0 4.3E-09 9.4E-14 59.4 7.8 61 76-136 2-62 (63)
53 cd05031 S-100A10_like S-100A10 99.0 5.1E-09 1.1E-13 64.9 8.6 70 7-76 8-83 (94)
54 cd00052 EH Eps15 homology doma 99.0 2.9E-09 6.2E-14 61.6 7.0 62 9-73 1-62 (67)
55 PF14658 EF-hand_9: EF-hand do 99.0 3.8E-09 8.2E-14 59.9 6.9 62 78-139 2-65 (66)
56 cd00213 S-100 S-100: S-100 dom 99.0 4.4E-09 9.5E-14 64.4 7.8 68 7-74 8-81 (88)
57 PF13833 EF-hand_8: EF-hand do 98.9 5.7E-09 1.2E-13 57.8 6.6 52 20-72 1-53 (54)
58 cd00051 EFh EF-hand, calcium b 98.9 6.8E-09 1.5E-13 58.6 7.0 61 9-70 2-62 (63)
59 KOG2643|consensus 98.9 1.2E-08 2.5E-13 77.4 8.7 129 9-139 320-454 (489)
60 cd00252 SPARC_EC SPARC_EC; ext 98.9 1.3E-08 2.8E-13 65.2 7.5 62 72-137 46-107 (116)
61 cd05023 S-100A11 S-100A11: S-1 98.8 3.3E-08 7.1E-13 60.5 8.1 67 8-74 10-82 (89)
62 PF14658 EF-hand_9: EF-hand do 98.8 3.1E-08 6.7E-13 56.2 6.6 62 11-72 2-64 (66)
63 KOG2562|consensus 98.8 1.1E-07 2.4E-12 72.8 10.9 119 13-135 284-421 (493)
64 cd05030 calgranulins Calgranul 98.8 4.2E-08 9.1E-13 60.0 7.2 67 73-139 7-80 (88)
65 cd05030 calgranulins Calgranul 98.8 3.4E-08 7.4E-13 60.4 6.5 66 8-73 9-80 (88)
66 KOG0040|consensus 98.7 4.7E-08 1E-12 83.4 8.5 120 8-136 2254-2396(2399)
67 KOG0041|consensus 98.7 2.1E-07 4.6E-12 63.8 9.9 101 63-165 87-198 (244)
68 cd00252 SPARC_EC SPARC_EC; ext 98.7 8.4E-08 1.8E-12 61.4 7.3 57 9-70 50-106 (116)
69 KOG0751|consensus 98.7 4.8E-07 1E-11 69.9 12.3 155 9-168 110-276 (694)
70 cd05024 S-100A10 S-100A10: A s 98.6 8.1E-07 1.7E-11 54.0 8.4 67 9-76 10-80 (91)
71 KOG0038|consensus 98.5 4.5E-06 9.7E-11 54.6 11.2 149 19-172 3-179 (189)
72 cd05024 S-100A10 S-100A10: A s 98.5 1.9E-06 4E-11 52.4 8.8 66 73-139 7-77 (91)
73 PF00036 EF-hand_1: EF hand; 98.5 2.5E-07 5.4E-12 44.2 3.7 28 8-35 1-28 (29)
74 PF00036 EF-hand_1: EF hand; 98.5 2.5E-07 5.5E-12 44.1 3.7 27 76-102 2-28 (29)
75 PF13405 EF-hand_6: EF-hand do 98.3 8.7E-07 1.9E-11 43.1 3.6 30 75-104 1-31 (31)
76 KOG4251|consensus 98.3 2E-06 4.4E-11 61.0 5.3 116 20-135 212-342 (362)
77 PF14788 EF-hand_10: EF hand; 98.3 7.2E-06 1.6E-10 44.0 6.2 49 91-139 2-50 (51)
78 PF12763 EF-hand_4: Cytoskelet 98.2 1.9E-05 4.2E-10 49.6 8.0 62 9-74 12-73 (104)
79 PF13405 EF-hand_6: EF-hand do 98.2 3.5E-06 7.6E-11 40.9 3.7 27 8-34 1-27 (31)
80 PF14788 EF-hand_10: EF hand; 98.2 1E-05 2.2E-10 43.4 5.4 50 23-73 1-50 (51)
81 KOG0377|consensus 98.1 6.9E-05 1.5E-09 57.7 11.5 125 44-170 464-615 (631)
82 KOG0041|consensus 98.1 3.2E-05 7E-10 53.3 8.7 64 9-73 101-164 (244)
83 KOG0040|consensus 98.1 1.9E-05 4.1E-10 68.3 8.6 85 73-158 2252-2351(2399)
84 KOG0169|consensus 98.1 6.8E-05 1.5E-09 61.1 10.8 128 9-138 138-274 (746)
85 PF12763 EF-hand_4: Cytoskelet 98.0 0.0001 2.3E-09 46.2 9.3 65 73-140 9-73 (104)
86 PF13202 EF-hand_5: EF hand; P 98.0 1.2E-05 2.6E-10 36.9 3.5 25 9-33 1-25 (25)
87 PRK12309 transaldolase/EF-hand 98.0 3.3E-05 7.1E-10 59.6 7.6 98 23-139 281-386 (391)
88 KOG4666|consensus 98.0 1.9E-05 4.2E-10 58.3 5.9 105 44-149 259-370 (412)
89 PF13202 EF-hand_5: EF hand; P 98.0 1.2E-05 2.5E-10 36.9 3.1 23 77-99 2-24 (25)
90 PRK12309 transaldolase/EF-hand 97.9 4.8E-05 1E-09 58.7 6.6 97 61-169 282-384 (391)
91 PF10591 SPARC_Ca_bdg: Secrete 97.8 9.7E-06 2.1E-10 51.8 2.1 60 74-135 54-113 (113)
92 KOG4666|consensus 97.7 0.00021 4.4E-09 53.0 7.3 99 4-102 256-359 (412)
93 KOG1707|consensus 97.6 0.00057 1.2E-08 54.6 9.2 129 7-139 195-378 (625)
94 KOG1029|consensus 97.6 0.002 4.4E-08 53.0 12.0 123 11-139 20-258 (1118)
95 PF09279 EF-hand_like: Phospho 97.6 0.00022 4.7E-09 42.9 5.2 63 75-138 1-69 (83)
96 PF10591 SPARC_Ca_bdg: Secrete 97.4 9.1E-05 2E-09 47.3 2.0 57 9-68 56-112 (113)
97 KOG0046|consensus 97.4 0.0011 2.4E-08 52.2 7.5 65 73-138 18-85 (627)
98 PF09279 EF-hand_like: Phospho 97.3 0.00074 1.6E-08 40.6 4.6 63 8-71 1-68 (83)
99 smart00054 EFh EF-hand, calciu 97.1 0.00086 1.9E-08 30.8 3.1 27 9-35 2-28 (29)
100 KOG4065|consensus 96.9 0.0039 8.5E-08 39.4 5.5 59 77-135 70-142 (144)
101 KOG0046|consensus 96.9 0.0058 1.3E-07 48.3 7.4 64 9-73 21-86 (627)
102 smart00054 EFh EF-hand, calciu 96.9 0.0017 3.6E-08 29.7 3.0 25 77-101 3-27 (29)
103 PLN02952 phosphoinositide phos 96.8 0.007 1.5E-07 49.3 7.8 81 57-138 13-110 (599)
104 KOG1029|consensus 96.0 0.017 3.7E-07 47.9 5.5 66 5-73 193-258 (1118)
105 PF05517 p25-alpha: p25-alpha 96.0 0.056 1.2E-06 36.5 7.2 85 9-102 1-90 (154)
106 KOG1707|consensus 95.7 0.16 3.4E-06 41.3 9.4 97 74-172 195-345 (625)
107 KOG4065|consensus 95.6 0.062 1.3E-06 34.1 5.6 64 5-68 64-141 (144)
108 KOG0169|consensus 95.5 0.065 1.4E-06 44.5 7.1 89 76-167 138-229 (746)
109 KOG4347|consensus 95.5 0.031 6.8E-07 45.4 5.2 72 24-96 535-612 (671)
110 KOG0035|consensus 95.4 0.2 4.4E-06 42.6 9.7 90 7-98 747-848 (890)
111 PF05042 Caleosin: Caleosin re 95.0 0.33 7.1E-06 33.2 8.0 125 9-135 9-163 (174)
112 KOG2243|consensus 95.0 0.049 1.1E-06 48.3 4.9 59 78-137 4061-4119(5019)
113 KOG3555|consensus 94.9 0.083 1.8E-06 39.9 5.5 95 9-104 213-312 (434)
114 PF05517 p25-alpha: p25-alpha 94.8 0.39 8.4E-06 32.5 8.2 61 79-139 7-70 (154)
115 PF09069 EF-hand_3: EF-hand; 94.4 0.49 1.1E-05 28.9 7.1 65 73-140 2-77 (90)
116 PF08726 EFhand_Ca_insen: Ca2+ 94.2 0.064 1.4E-06 30.9 2.8 54 74-135 6-66 (69)
117 KOG4578|consensus 93.6 0.067 1.5E-06 40.2 2.7 64 76-139 335-399 (421)
118 KOG1955|consensus 93.4 0.32 7E-06 38.7 6.2 64 73-138 230-293 (737)
119 KOG1265|consensus 93.3 3.2 6.9E-05 35.8 12.0 117 18-138 159-299 (1189)
120 KOG3555|consensus 93.3 0.17 3.7E-06 38.3 4.5 61 6-71 249-309 (434)
121 KOG1955|consensus 93.3 0.28 6.1E-06 39.1 5.7 61 9-72 233-293 (737)
122 KOG0042|consensus 93.0 0.38 8.1E-06 39.0 6.2 66 75-140 594-659 (680)
123 KOG2243|consensus 92.8 0.25 5.5E-06 44.2 5.3 57 12-70 4062-4118(5019)
124 KOG4578|consensus 92.4 0.08 1.7E-06 39.8 1.7 58 45-102 334-398 (421)
125 PF09069 EF-hand_3: EF-hand; 91.4 1.5 3.2E-05 26.8 6.1 62 6-70 2-73 (90)
126 PF08726 EFhand_Ca_insen: Ca2+ 91.0 0.47 1E-05 27.4 3.5 56 4-68 3-65 (69)
127 KOG0998|consensus 89.2 0.67 1.5E-05 40.0 4.5 59 9-71 131-189 (847)
128 PF05042 Caleosin: Caleosin re 88.9 4.4 9.5E-05 27.9 7.4 59 41-100 93-164 (174)
129 KOG0998|consensus 88.5 1.5 3.3E-05 37.8 6.2 128 7-140 11-192 (847)
130 KOG4347|consensus 88.1 0.99 2.1E-05 37.2 4.5 57 75-132 556-612 (671)
131 KOG0042|consensus 87.9 1.2 2.5E-05 36.4 4.7 64 9-73 595-658 (680)
132 PLN02230 phosphoinositide phos 87.7 1.3 2.9E-05 36.5 5.1 64 74-138 29-102 (598)
133 KOG1264|consensus 87.4 2.7 5.8E-05 36.0 6.6 135 4-140 137-295 (1267)
134 PLN02952 phosphoinositide phos 87.0 3.8 8.2E-05 34.0 7.3 52 20-72 13-65 (599)
135 PF14513 DAG_kinase_N: Diacylg 86.5 1.2 2.6E-05 29.5 3.5 50 8-57 26-82 (138)
136 KOG0035|consensus 86.3 4.7 0.0001 34.9 7.6 81 73-153 746-838 (890)
137 PF08414 NADPH_Ox: Respiratory 86.1 1.5 3.3E-05 27.1 3.6 60 8-73 31-93 (100)
138 PLN02222 phosphoinositide phos 85.9 3.8 8.2E-05 33.9 6.8 63 74-138 25-90 (581)
139 PLN02228 Phosphoinositide phos 85.5 4.9 0.00011 33.1 7.2 66 4-71 21-91 (567)
140 KOG3866|consensus 85.1 1.9 4E-05 32.5 4.3 60 77-136 247-322 (442)
141 PLN02222 phosphoinositide phos 85.1 4.3 9.2E-05 33.6 6.7 66 4-71 22-89 (581)
142 KOG1265|consensus 84.8 4.5 9.8E-05 35.0 6.7 68 4-71 218-298 (1189)
143 KOG4403|consensus 83.1 4.9 0.00011 31.7 5.9 95 56-154 40-165 (575)
144 PLN02228 Phosphoinositide phos 83.0 7.5 0.00016 32.1 7.3 62 75-138 25-92 (567)
145 PF14513 DAG_kinase_N: Diacylg 80.5 11 0.00024 25.0 6.1 30 90-119 48-78 (138)
146 PF08976 DUF1880: Domain of un 80.4 1.9 4E-05 27.5 2.4 32 41-72 4-35 (118)
147 PLN02230 phosphoinositide phos 80.4 9 0.0002 31.9 6.9 67 4-71 26-101 (598)
148 PF07308 DUF1456: Protein of u 78.2 11 0.00023 21.7 5.0 46 93-138 16-61 (68)
149 PLN02223 phosphoinositide phos 77.5 5.2 0.00011 32.7 4.7 64 75-139 17-93 (537)
150 KOG3449|consensus 77.3 11 0.00023 23.8 5.0 44 77-120 4-47 (112)
151 KOG3866|consensus 76.6 13 0.00028 28.2 6.1 55 50-104 250-326 (442)
152 PTZ00373 60S Acidic ribosomal 76.3 12 0.00025 23.9 5.1 44 77-120 6-49 (112)
153 COG2818 Tag 3-methyladenine DN 74.4 5.5 0.00012 27.7 3.6 52 67-118 48-99 (188)
154 PLN02223 phosphoinositide phos 73.3 17 0.00036 29.9 6.5 67 5-72 14-92 (537)
155 KOG2871|consensus 73.1 4 8.7E-05 31.6 2.9 61 5-66 307-368 (449)
156 PF12174 RST: RCD1-SRO-TAF4 (R 73.0 3.9 8.4E-05 23.7 2.2 49 88-139 6-54 (70)
157 cd05833 Ribosomal_P2 Ribosomal 72.3 16 0.00036 23.1 5.1 44 77-120 4-47 (109)
158 PF01023 S_100: S-100/ICaBP ty 69.0 11 0.00023 19.6 3.1 28 8-35 7-36 (44)
159 PF07879 PHB_acc_N: PHB/PHA ac 68.1 13 0.00029 21.0 3.5 22 81-102 10-31 (64)
160 KOG3077|consensus 67.9 47 0.001 24.6 11.7 67 4-71 61-128 (260)
161 cd07313 terB_like_2 tellurium 67.2 26 0.00057 21.4 5.4 76 20-97 12-95 (104)
162 KOG0506|consensus 66.0 51 0.0011 26.8 7.6 61 77-137 89-157 (622)
163 TIGR01848 PHA_reg_PhaR polyhyd 64.8 33 0.00071 21.6 5.4 22 81-102 10-31 (107)
164 PLN00138 large subunit ribosom 64.2 30 0.00064 22.1 5.1 42 79-120 6-47 (113)
165 TIGR00624 tag DNA-3-methyladen 63.8 13 0.00028 25.9 3.6 53 66-118 45-97 (179)
166 PF03979 Sigma70_r1_1: Sigma-7 63.7 4 8.6E-05 24.3 1.0 44 7-55 7-50 (82)
167 PRK10353 3-methyl-adenine DNA 61.8 11 0.00024 26.4 3.1 51 68-118 48-98 (187)
168 KOG2871|consensus 60.9 11 0.00023 29.4 3.0 59 74-132 309-368 (449)
169 PF08976 DUF1880: Domain of un 60.4 13 0.00028 23.8 2.9 33 107-139 4-36 (118)
170 KOG1785|consensus 60.2 85 0.0019 24.9 8.3 93 9-103 177-275 (563)
171 PRK06402 rpl12p 50S ribosomal 60.0 41 0.0009 21.2 5.3 31 90-120 16-46 (106)
172 PF00404 Dockerin_1: Dockerin 59.9 14 0.00031 15.9 2.3 14 84-97 1-14 (21)
173 cd04411 Ribosomal_P1_P2_L12p R 58.3 44 0.00096 21.0 5.6 30 91-120 17-46 (105)
174 COG3763 Uncharacterized protei 58.0 31 0.00068 19.9 3.9 32 20-52 35-66 (71)
175 KOG4070|consensus 57.8 37 0.00081 22.9 4.8 67 7-73 12-86 (180)
176 PF03672 UPF0154: Uncharacteri 57.6 26 0.00057 19.9 3.5 34 19-53 27-60 (64)
177 PF05099 TerB: Tellurite resis 54.4 17 0.00036 23.6 2.9 79 87-167 36-123 (140)
178 PF08461 HTH_12: Ribonuclease 54.2 18 0.00039 20.5 2.6 38 19-57 9-46 (66)
179 PF11116 DUF2624: Protein of u 53.9 47 0.001 20.0 7.2 49 89-137 13-61 (85)
180 COG2058 RPP1A Ribosomal protei 53.8 53 0.0011 20.8 4.8 42 78-120 5-46 (109)
181 PRK00523 hypothetical protein; 53.8 33 0.00071 20.0 3.6 34 19-53 35-68 (72)
182 KOG1954|consensus 52.4 37 0.0008 26.8 4.7 56 9-68 446-501 (532)
183 PF03352 Adenine_glyco: Methyl 51.9 12 0.00026 26.0 1.9 52 68-119 43-94 (179)
184 PF08414 NADPH_Ox: Respiratory 51.8 57 0.0012 20.3 6.6 61 73-139 29-93 (100)
185 COG4103 Uncharacterized protei 51.7 63 0.0014 21.6 5.1 82 19-102 40-129 (148)
186 COG4103 Uncharacterized protei 51.3 58 0.0013 21.8 4.9 72 78-151 34-114 (148)
187 PHA02335 hypothetical protein 49.8 51 0.0011 20.8 4.2 32 57-88 21-52 (118)
188 KOG4004|consensus 47.2 9.1 0.0002 27.0 0.8 56 80-137 193-249 (259)
189 PF09107 SelB-wing_3: Elongati 47.0 28 0.00061 18.6 2.5 31 20-56 7-37 (50)
190 PF06648 DUF1160: Protein of u 46.5 50 0.0011 21.4 4.0 31 22-52 49-79 (122)
191 PRK01844 hypothetical protein; 46.4 46 0.001 19.3 3.4 34 19-53 34-67 (72)
192 PF09336 Vps4_C: Vps4 C termin 44.8 34 0.00073 19.2 2.7 25 90-114 29-53 (62)
193 PF12486 DUF3702: ImpA domain 43.4 55 0.0012 22.0 4.0 43 61-103 56-98 (148)
194 PHA02335 hypothetical protein 40.2 95 0.0021 19.6 5.2 42 112-155 12-53 (118)
195 TIGR01639 P_fal_TIGR01639 Plas 38.7 72 0.0016 17.7 3.8 32 88-119 7-38 (61)
196 PF12995 DUF3879: Domain of un 38.1 1.3E+02 0.0029 20.7 5.8 56 91-154 2-57 (186)
197 PTZ00373 60S Acidic ribosomal 37.8 1.1E+02 0.0024 19.6 6.0 45 8-53 4-48 (112)
198 PF10668 Phage_terminase: Phag 37.3 40 0.00087 18.9 2.2 24 10-34 10-33 (60)
199 cd07316 terB_like_DjlA N-termi 36.4 1E+02 0.0022 18.7 6.5 52 20-71 12-63 (106)
200 KOG0713|consensus 34.8 57 0.0012 25.1 3.3 50 2-53 26-81 (336)
201 TIGR03685 L21P_arch 50S riboso 34.7 1.2E+02 0.0026 19.1 5.4 31 90-120 16-46 (105)
202 PF04282 DUF438: Family of unk 34.1 87 0.0019 18.2 3.3 11 61-71 46-56 (71)
203 cd05832 Ribosomal_L12p Ribosom 34.0 1.2E+02 0.0027 19.1 5.3 31 90-120 16-46 (106)
204 PF11116 DUF2624: Protein of u 33.9 1.1E+02 0.0024 18.5 7.2 48 22-70 13-60 (85)
205 PF11020 DUF2610: Domain of un 33.6 54 0.0012 19.5 2.4 40 31-70 36-75 (82)
206 PF12419 DUF3670: SNF2 Helicas 33.6 1.2E+02 0.0027 20.0 4.5 49 20-68 80-137 (141)
207 PF01885 PTS_2-RNA: RNA 2'-pho 32.9 95 0.0021 21.7 4.1 36 85-120 27-62 (186)
208 KOG4301|consensus 32.6 1.4E+02 0.0031 23.2 5.0 93 45-138 111-215 (434)
209 KOG1785|consensus 32.3 2.6E+02 0.0057 22.4 7.2 80 86-165 186-269 (563)
210 KOG2301|consensus 31.3 51 0.0011 31.1 3.0 65 5-71 1415-1483(1592)
211 PF02761 Cbl_N2: CBL proto-onc 30.3 1.3E+02 0.0028 18.2 6.1 50 88-137 20-69 (85)
212 COG4359 Uncharacterized conser 29.6 1.9E+02 0.004 20.6 4.9 45 88-137 41-86 (220)
213 KOG4286|consensus 29.3 4E+02 0.0086 23.5 11.4 100 27-126 403-522 (966)
214 KOG0039|consensus 29.1 1.9E+02 0.0041 24.7 5.8 81 58-140 2-91 (646)
215 PRK09430 djlA Dna-J like membr 29.0 2.4E+02 0.0053 20.9 7.9 97 19-118 67-174 (267)
216 PRK00819 RNA 2'-phosphotransfe 28.6 1.4E+02 0.0031 20.7 4.3 30 87-116 30-59 (179)
217 cd05831 Ribosomal_P1 Ribosomal 28.0 1.6E+02 0.0034 18.4 4.3 35 86-120 13-47 (103)
218 KOG0039|consensus 27.6 1.6E+02 0.0034 25.2 5.1 74 21-102 2-89 (646)
219 PF08044 DUF1707: Domain of un 27.1 90 0.0019 16.9 2.5 27 88-114 21-47 (53)
220 KOG2301|consensus 26.6 67 0.0015 30.4 3.0 64 74-138 1417-1484(1592)
221 COG5562 Phage envelope protein 26.3 49 0.0011 21.8 1.6 28 42-72 73-100 (137)
222 TIGR02787 codY_Gpos GTP-sensin 26.1 2.5E+02 0.0054 20.8 5.2 12 59-70 136-147 (251)
223 PF11829 DUF3349: Protein of u 25.8 59 0.0013 20.1 1.8 28 25-53 21-48 (96)
224 KOG4286|consensus 25.5 2.6E+02 0.0056 24.5 5.8 43 13-56 476-518 (966)
225 PF09068 EF-hand_2: EF hand; 25.1 2E+02 0.0044 18.7 7.9 22 113-134 100-121 (127)
226 TIGR03573 WbuX N-acetyl sugar 25.0 1.7E+02 0.0038 22.5 4.7 13 59-71 301-313 (343)
227 PF11848 DUF3368: Domain of un 24.9 1.2E+02 0.0025 15.9 3.8 33 87-119 14-47 (48)
228 PF12631 GTPase_Cys_C: Catalyt 24.6 1.5E+02 0.0032 17.0 5.7 56 64-119 13-72 (73)
229 PF09373 PMBR: Pseudomurein-bi 24.5 96 0.0021 14.7 3.1 18 58-75 2-19 (33)
230 PF08100 Dimerisation: Dimeris 24.1 61 0.0013 17.4 1.5 39 12-52 11-49 (51)
231 TIGR03573 WbuX N-acetyl sugar 23.5 2.1E+02 0.0046 22.1 4.9 15 124-138 300-314 (343)
232 KOG4403|consensus 23.4 3.9E+02 0.0084 21.7 6.1 61 7-71 68-128 (575)
233 PF02459 Adeno_terminal: Adeno 23.4 2.2E+02 0.0048 23.6 5.0 45 78-122 459-503 (548)
234 PF10897 DUF2713: Protein of u 23.3 2.8E+02 0.0062 19.8 6.6 36 124-159 175-228 (246)
235 PRK04424 fatty acid biosynthes 22.3 2.2E+02 0.0048 19.8 4.4 47 1-55 1-47 (185)
236 PF11207 DUF2989: Protein of u 22.2 2.6E+02 0.0056 20.0 4.6 60 10-71 126-186 (203)
237 KOG4519|consensus 21.8 2.6E+02 0.0057 21.8 4.8 57 44-100 333-389 (459)
238 PF02885 Glycos_trans_3N: Glyc 21.6 68 0.0015 18.0 1.4 31 22-52 13-43 (66)
239 COG4840 Uncharacterized protei 21.4 86 0.0019 17.9 1.7 29 1-29 1-33 (71)
240 cd06395 PB1_Map2k5 PB1 domain 21.1 1E+02 0.0022 18.4 2.1 32 125-156 21-54 (91)
241 PF00427 PBS_linker_poly: Phyc 20.9 99 0.0022 20.4 2.2 78 58-146 42-121 (131)
242 KOG1954|consensus 20.7 2.5E+02 0.0054 22.5 4.6 56 76-134 446-501 (532)
243 PRK14981 DNA-directed RNA poly 20.5 2.3E+02 0.005 17.9 3.8 23 94-116 82-104 (112)
244 TIGR00135 gatC glutamyl-tRNA(G 20.5 2E+02 0.0044 17.2 3.5 29 91-119 1-29 (93)
245 KOG3077|consensus 20.4 3.7E+02 0.0081 20.1 6.4 63 76-138 66-129 (260)
246 PF14771 DUF4476: Domain of un 20.4 2.1E+02 0.0046 17.2 5.9 9 61-69 40-48 (95)
247 PF06384 ICAT: Beta-catenin-in 20.3 1.5E+02 0.0034 17.5 2.7 23 95-117 21-43 (78)
248 cd08315 Death_TRAILR_DR4_DR5 D 20.3 2.2E+02 0.0049 17.4 8.7 89 5-116 2-90 (96)
249 PF07499 RuvA_C: RuvA, C-termi 20.1 1.5E+02 0.0032 15.3 3.9 37 94-134 4-40 (47)
No 1
>KOG0037|consensus
Probab=99.97 E-value=2.4e-29 Score=172.04 Aligned_cols=166 Identities=50% Similarity=0.953 Sum_probs=159.1
Q ss_pred hhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHhhhCC
Q psy1083 6 PEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVTDWQSCFKSFDK 85 (173)
Q Consensus 6 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~f~~~D~ 85 (173)
..++..+|+.+|+++.|.|+.+|++.++......+++.+.|+.++..+|.+.+|+|+++||..+|..+..|+.+|+.+|+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~ 135 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDR 135 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34689999999999999999999999998667789999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHHHHHHHhhccCCCCCCceeeeHHHHH
Q psy1083 86 DNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFL 165 (173)
Q Consensus 86 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~~~~~~~f~~~d~~~~g~i~~~~~~~~ 165 (173)
|++|.|+..||+++|..+|..++++-.+.++++++..++|.|.+.+|++++..++.+.++|+..|++.+|.|++++++|+
T Consensus 136 D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~q~G~i~~~y~dfl 215 (221)
T KOG0037|consen 136 DRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRDTAQQGSITISYDDFL 215 (221)
T ss_pred CCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhccccceeEEEeHHHHH
Confidence 99999999999999999999999999999999999877999999999999999999999999999999999999999999
Q ss_pred Hhhhcc
Q psy1083 166 SMVFSL 171 (173)
Q Consensus 166 ~~~~~~ 171 (173)
.+++.+
T Consensus 216 ~~t~~~ 221 (221)
T KOG0037|consen 216 QMTMSI 221 (221)
T ss_pred HHhhcC
Confidence 988753
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.93 E-value=1.1e-24 Score=144.85 Aligned_cols=130 Identities=30% Similarity=0.477 Sum_probs=122.2
Q ss_pred hHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH-------HHHHHHH
Q psy1083 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKY-------VTDWQSC 79 (173)
Q Consensus 7 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~-------~~~~~~~ 79 (173)
++++++|+.+|++++|.|+..++..+++. ++.+.+.+.+..++..++. +.+.|+|.+|+..++. .++++.+
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~-lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~a 97 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRS-LGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREA 97 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHH-cCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34899999999999999999999999997 7888899999999999999 8899999999999975 3689999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH
Q psy1083 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 80 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~ 138 (173)
|+.||.+++|+|+..++..+++.+|..+++++++.++..++.+++|.|+|++|...+..
T Consensus 98 F~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 98 FKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999997653
No 3
>KOG0027|consensus
Probab=99.92 E-value=1e-23 Score=142.19 Aligned_cols=132 Identities=30% Similarity=0.492 Sum_probs=123.4
Q ss_pred ChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH-----------
Q psy1083 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV----------- 73 (173)
Q Consensus 5 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~----------- 73 (173)
...+++++|+.+|.+++|.|+..++..+++. ++...++.++..++..+|.+++|.|++.+|+.++...
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~-lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRS-LGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 3456999999999999999999999999999 6677799999999999999999999999999988743
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHH
Q psy1083 74 TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCV 137 (173)
Q Consensus 74 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~ 137 (173)
+.++.+|+.+|++++|+|+..||+.+|..+|...+.++++.+++.++.+++|.|+|++|+..+.
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 3799999999999999999999999999999999999999999999999999999999999875
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.87 E-value=1.4e-20 Score=126.46 Aligned_cols=131 Identities=27% Similarity=0.482 Sum_probs=118.8
Q ss_pred hHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH-------HHHHHH
Q psy1083 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV-------TDWQSC 79 (173)
Q Consensus 7 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-------~~~~~~ 79 (173)
.++++.|..+|.+++|.|+.++|..++.. .+.+.+...+..+++.+|.+++|.|++++|+..+... ..+..+
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 34888999999999999999999999987 4556678899999999999999999999999987643 468899
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH
Q psy1083 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 80 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~ 138 (173)
|..+|.+++|.|+.+++..++..++..++..++..++..++.+++|.|+|++|..++.+
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 99999999999999999999999998899999999999999999999999999998753
No 5
>PTZ00183 centrin; Provisional
Probab=99.86 E-value=2.9e-20 Score=126.17 Aligned_cols=131 Identities=27% Similarity=0.439 Sum_probs=119.7
Q ss_pred hHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH-------HHHHHH
Q psy1083 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV-------TDWQSC 79 (173)
Q Consensus 7 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-------~~~~~~ 79 (173)
.+++++|..+|.+++|.|+..||..+++. .+.+.+...+..++..+|.+++|.|++++|...+... +.++.+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRS-LGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 34888999999999999999999999997 4556788899999999999999999999999877643 468899
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH
Q psy1083 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 80 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~ 138 (173)
|+.+|.+++|.|+..||..++...+..++..++..++..++.+++|.|++++|..++..
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998764
No 6
>KOG0028|consensus
Probab=99.83 E-value=3.4e-19 Score=116.53 Aligned_cols=131 Identities=25% Similarity=0.437 Sum_probs=122.1
Q ss_pred hHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH-------HHHHHHH
Q psy1083 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKY-------VTDWQSC 79 (173)
Q Consensus 7 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~-------~~~~~~~ 79 (173)
++++..|..+|.+.+|.|+.+|++-+++. .+......++..++..+|+++.|.|+|++|...++. .+++..+
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmra-lGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRA-LGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHH-cCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 55999999999999999999999999988 677778899999999999999999999999998764 3689999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH
Q psy1083 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 80 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~ 138 (173)
|+.+|-+++|.|+..+|+.+.+.+|..++++++.+++..++.+++|.|+-++|...++.
T Consensus 112 frl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998763
No 7
>KOG0031|consensus
Probab=99.82 E-value=1.7e-18 Score=112.45 Aligned_cols=127 Identities=25% Similarity=0.397 Sum_probs=117.1
Q ss_pred hhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH-------HHHHHH
Q psy1083 6 PEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKY-------VTDWQS 78 (173)
Q Consensus 6 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~-------~~~~~~ 78 (173)
.+|++++|...|.+.+|.|..++++.++.+ ++...+++++..++. ..+|.|+|..|+.++.. .+.+..
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aS-lGk~~~d~elDaM~~----Ea~gPINft~FLTmfGekL~gtdpe~~I~~ 105 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLAS-LGKIASDEELDAMMK----EAPGPINFTVFLTMFGEKLNGTDPEEVILN 105 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHH----hCCCCeeHHHHHHHHHHHhcCCCHHHHHHH
Confidence 356999999999999999999999999999 566689999999996 45789999999999874 357899
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHH
Q psy1083 79 CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCV 137 (173)
Q Consensus 79 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~ 137 (173)
+|+.||.+++|.|..+.++.+|...|.++++++++.+++.+-.+..|.++|.+|+..+.
T Consensus 106 AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 106 AFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876
No 8
>KOG0030|consensus
Probab=99.80 E-value=2.9e-18 Score=109.60 Aligned_cols=132 Identities=24% Similarity=0.409 Sum_probs=116.7
Q ss_pred CChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCC--CCCCccHHHHHHHHHHH--------
Q psy1083 4 PPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKN--NTGQISFEDFGALWKYV-------- 73 (173)
Q Consensus 4 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~--~~g~v~~~ef~~~~~~~-------- 73 (173)
.+.++++.+|..||..++|.|+..+...+++. ++.+.+++++...+..+.++ +-.+++|++|+-++..+
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRa-lG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t 86 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRA-LGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGT 86 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHH-hcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCc
Confidence 34566999999999999999999999999999 56666899999999888776 44689999999988765
Q ss_pred -HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHH
Q psy1083 74 -TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCV 137 (173)
Q Consensus 74 -~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~ 137 (173)
+.+.+..+.||++++|.|...|++.+|.++|..+++++++.++.... |.+|.|+|+.|++-+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 45788899999999999999999999999999999999999999876 4589999999998654
No 9
>KOG0044|consensus
Probab=99.79 E-value=9.1e-18 Score=115.57 Aligned_cols=145 Identities=20% Similarity=0.343 Sum_probs=124.3
Q ss_pred ChhHHHHHHHhhCCC-CCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH------HHHH
Q psy1083 5 PPEFLRDIFQRVDRD-KSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV------TDWQ 77 (173)
Q Consensus 5 ~~~~~~~~F~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~------~~~~ 77 (173)
++.+++++|+-|-.+ ++|.++.++|+.+++..+...-+...+..+|+.+|.+++|.|+|.||+..++.. +.+.
T Consensus 24 ~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~ 103 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLK 103 (193)
T ss_pred CHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhh
Confidence 567789999988544 799999999999999866556677899999999999999999999999988754 5688
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHc----CC-------CCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHHHHHHHh
Q psy1083 78 SCFKSFDKDNSGNIDKLELKTALGTF----GY-------RLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSF 146 (173)
Q Consensus 78 ~~f~~~D~~~~g~i~~~e~~~~l~~~----~~-------~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~~~~~~~f 146 (173)
.+|+++|.+++|.|+.+|+..++.++ +. ...+..+..+++.+|.|+||.|++++|...+...+.+..++
T Consensus 104 w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l 183 (193)
T KOG0044|consen 104 WAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRAL 183 (193)
T ss_pred hhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHh
Confidence 89999999999999999999998874 22 11346678999999999999999999999999888888877
Q ss_pred hcc
Q psy1083 147 SQH 149 (173)
Q Consensus 147 ~~~ 149 (173)
...
T Consensus 184 ~~~ 186 (193)
T KOG0044|consen 184 EQD 186 (193)
T ss_pred hhc
Confidence 554
No 10
>KOG0034|consensus
Probab=99.73 E-value=1.9e-16 Score=109.02 Aligned_cols=132 Identities=27% Similarity=0.458 Sum_probs=108.1
Q ss_pred HHHHHHhhCCC-CCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCC-ccHHHHHHHHHHH-------HHHHHH
Q psy1083 9 LRDIFQRVDRD-KSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQ-ISFEDFGALWKYV-------TDWQSC 79 (173)
Q Consensus 9 ~~~~F~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~-v~~~ef~~~~~~~-------~~~~~~ 79 (173)
+...|..+|.+ ++|.|+.+||..+..- ..+++ ..++++.++.+++|. |++++|+..++.. ++++.+
T Consensus 35 L~~rF~kl~~~~~~g~lt~eef~~i~~~-~~Np~----~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~fa 109 (187)
T KOG0034|consen 35 LYERFKKLDRNNGDGYLTKEEFLSIPEL-ALNPL----ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFA 109 (187)
T ss_pred HHHHHHHhccccccCccCHHHHHHHHHH-hcCcH----HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHH
Confidence 66678888998 9999999999999853 44444 567777787877777 9999999998743 489999
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHc-CCCCC--H----HHHHHHHHhhCCCCCcceeHHHHHHHHHHHHHHHHH
Q psy1083 80 FKSFDKDNSGNIDKLELKTALGTF-GYRLG--D----NTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTS 145 (173)
Q Consensus 80 f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~--~----~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~~~~~~~ 145 (173)
|+.||.+++|.|+.+|+.+++..+ +...+ + ..++.++..+|.++||+|+++||.+++.+.|.+.+-
T Consensus 110 F~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~ 182 (187)
T KOG0034|consen 110 FRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLEK 182 (187)
T ss_pred HHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHH
Confidence 999999999999999999999985 43333 3 345677888999999999999999999877665543
No 11
>KOG0036|consensus
Probab=99.73 E-value=4.4e-16 Score=115.97 Aligned_cols=150 Identities=21% Similarity=0.400 Sum_probs=131.5
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH-HHHHHHHHhhhCCCC
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKY-VTDWQSCFKSFDKDN 87 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~-~~~~~~~f~~~D~~~ 87 (173)
++..|+.+|.+++|.++..++.+.+..+-..+.+.+..+.+++.+|.+.+|.|+|.+|.+.+.. ..++..+|...|.++
T Consensus 16 ~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~h 95 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLEH 95 (463)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhcccc
Confidence 8899999999999999999999999885444477889999999999999999999999998864 457899999999999
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH-----HHHHHHHhh---ccCCCCCCcee
Q psy1083 88 SGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM-----LNLLTTSFS---QHDEDKDGVVT 158 (173)
Q Consensus 88 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~-----~~~~~~~f~---~~d~~~~g~i~ 158 (173)
+|.|+..|+.+.|+.+|..+++++.+++++..+.++.+.|+++||..++.. ++++...|+ .+|.+.+..|.
T Consensus 96 dG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~~W~h~~~idigE~~~iP 174 (463)
T KOG0036|consen 96 DGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYDFWRHVLLIDIGEDAVLP 174 (463)
T ss_pred CCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHHHHhhhhheEEEccccccCC
Confidence 999999999999999999999999999999999999999999999999864 344444444 35777776654
No 12
>PTZ00183 centrin; Provisional
Probab=99.68 E-value=4.7e-15 Score=100.52 Aligned_cols=127 Identities=20% Similarity=0.336 Sum_probs=110.1
Q ss_pred HHHHHHHHhcCCCCCCCccHHHHHHHHHHH------HHHHHHHhhhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHH
Q psy1083 44 ETVRLMIGMFDKNNTGQISFEDFGALWKYV------TDWQSCFKSFDKDNSGNIDKLELKTALGTF-GYRLGDNTVDILM 116 (173)
Q Consensus 44 ~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~ 116 (173)
..+...|..+|.+++|.|+..+|...+..+ ..+..+|..+|.+++|.|+..+|..++... ........++.++
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 96 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAF 96 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 567788899999999999999999888743 458899999999999999999999988663 3445667889999
Q ss_pred HhhCCCCCcceeHHHHHHHHHHH------HHHHHHhhccCCCCCCceeeeHHHHHHhhhccc
Q psy1083 117 KKFDHHGKGTILFDDFIHCCVML------NLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSLK 172 (173)
Q Consensus 117 ~~~~~~~~~~i~~~ef~~~l~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~~ 172 (173)
..++.+++|.|+..+|..++... ..+..+|..+|.+++|.|+ +++|..++...|
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~--~~ef~~~~~~~~ 156 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEIS--EEEFYRIMKKTN 156 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCc--HHHHHHHHhccc
Confidence 99999999999999999998753 5688899999999999966 999999988776
No 13
>KOG0027|consensus
Probab=99.65 E-value=1.1e-14 Score=98.21 Aligned_cols=126 Identities=25% Similarity=0.417 Sum_probs=108.9
Q ss_pred HHHHHHHHHhcCCCCCCCccHHHHHHHHHHH------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCC-----CHHH
Q psy1083 43 AETVRLMIGMFDKNNTGQISFEDFGALWKYV------TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRL-----GDNT 111 (173)
Q Consensus 43 ~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-----~~~~ 111 (173)
...+..+|..+|.+++|.|+-.++...+..+ .++..++..+|.+++|.|+.++|..++....... +.++
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 3568889999999999999999999988754 5789999999999999999999999998865432 3458
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHHHH------HHHHHHhhccCCCCCCceeeeHHHHHHhhhc
Q psy1083 112 VDILMKKFDHHGKGTILFDDFIHCCVML------NLLTTSFSQHDEDKDGVVTLHYEQFLSMVFS 170 (173)
Q Consensus 112 ~~~~~~~~~~~~~~~i~~~ef~~~l~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 170 (173)
+.++|+.+|.+++|.|+..++...|... +++...++.+|.+++|.|+ +.+|+.++..
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~--f~ef~~~m~~ 149 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVN--FEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEe--HHHHHHHHhc
Confidence 9999999999999999999999999864 5788999999999999975 8999888754
No 14
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.65 E-value=2.3e-14 Score=95.72 Aligned_cols=131 Identities=18% Similarity=0.326 Sum_probs=112.1
Q ss_pred CCCCH---HHHHHHHHhcCCCCCCCccHHHHHHHHHHH------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-CCCC
Q psy1083 39 KPFNA---ETVRLMIGMFDKNNTGQISFEDFGALWKYV------TDWQSCFKSFDKDNSGNIDKLELKTALGTFG-YRLG 108 (173)
Q Consensus 39 ~~~~~---~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~ 108 (173)
.++++ ++++..|..+|++++|.|++.++..+++.+ ..+..++..+|. ++|.|++.+|..++...- ...+
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCc
Confidence 34554 456667788899999999999999998743 578999999998 999999999999998753 4466
Q ss_pred HHHHHHHHHhhCCCCCcceeHHHHHHHHHHH------HHHHHHhhccCCCCCCceeeeHHHHHHhhhccc
Q psy1083 109 DNTVDILMKKFDHHGKGTILFDDFIHCCVML------NLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSLK 172 (173)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~~ 172 (173)
++++...|+.||.+++|.|+..++...+..+ +++...++.+|++++|.|+ +.+|...++.-|
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~--~~eF~~~~~~~~ 158 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEID--YEEFKKLIKDSP 158 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEe--HHHHHHHHhccC
Confidence 8999999999999999999999999999865 6789999999999999976 999998776543
No 15
>PTZ00184 calmodulin; Provisional
Probab=99.62 E-value=6e-14 Score=94.04 Aligned_cols=124 Identities=24% Similarity=0.432 Sum_probs=105.6
Q ss_pred HHHHHHHHhcCCCCCCCccHHHHHHHHHHH------HHHHHHHhhhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHH
Q psy1083 44 ETVRLMIGMFDKNNTGQISFEDFGALWKYV------TDWQSCFKSFDKDNSGNIDKLELKTALGTF-GYRLGDNTVDILM 116 (173)
Q Consensus 44 ~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~ 116 (173)
..+...|..+|.+++|.|++++|..++..+ +.+..+|..+|.+++|.|+.++|..++... ........+..++
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 456778888999999999999999887643 368899999999999999999999988764 2334556788999
Q ss_pred HhhCCCCCcceeHHHHHHHHHHH------HHHHHHhhccCCCCCCceeeeHHHHHHhhh
Q psy1083 117 KKFDHHGKGTILFDDFIHCCVML------NLLTTSFSQHDEDKDGVVTLHYEQFLSMVF 169 (173)
Q Consensus 117 ~~~~~~~~~~i~~~ef~~~l~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 169 (173)
..+|.+++|.|+.++|..++... ..+..+|+.+|.+++|.|+ +++|+.++.
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~--~~ef~~~~~ 147 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQIN--YEEFVKMMM 147 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCc--HHHHHHHHh
Confidence 99999999999999999998653 5678889999999999966 999988765
No 16
>KOG0044|consensus
Probab=99.56 E-value=5.8e-13 Score=91.90 Aligned_cols=144 Identities=21% Similarity=0.394 Sum_probs=118.8
Q ss_pred CcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCC-CCCCccHHHHHHHHHHH-------HHHHHHHhhhCCCCCCccc
Q psy1083 21 SGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKN-NTGQISFEDFGALWKYV-------TDWQSCFKSFDKDNSGNID 92 (173)
Q Consensus 21 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~-~~g~v~~~ef~~~~~~~-------~~~~~~f~~~D~~~~g~i~ 92 (173)
...++.+.+..+... ...+..+++..++.+-.+ .+|.++.++|..+++.. .....+|+.+|.+++|.|+
T Consensus 6 ~~~~~~~~~e~l~~~---t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~ 82 (193)
T KOG0044|consen 6 NSKLQPESLEQLVQQ---TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTID 82 (193)
T ss_pred cccCCcHHHHHHHHh---cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcC
Confidence 445666666666543 467888999999988554 48999999999998754 4578999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH-----------------HHHHHHhhccCCCCCC
Q psy1083 93 KLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML-----------------NLLTTSFSQHDEDKDG 155 (173)
Q Consensus 93 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~-----------------~~~~~~f~~~d~~~~g 155 (173)
+.||...+..+.-...++.++..++.+|.+++|.|+++|++.++... +.....|+.+|.|+||
T Consensus 83 F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg 162 (193)
T KOG0044|consen 83 FLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDG 162 (193)
T ss_pred HHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCC
Confidence 99988888877666778889999999999999999999999998753 3466789999999999
Q ss_pred ceeeeHHHHHHhhh
Q psy1083 156 VVTLHYEQFLSMVF 169 (173)
Q Consensus 156 ~i~~~~~~~~~~~~ 169 (173)
.+| .++|.+.+.
T Consensus 163 ~lT--~eef~~~~~ 174 (193)
T KOG0044|consen 163 KLT--LEEFIEGCK 174 (193)
T ss_pred ccc--HHHHHHHhh
Confidence 977 889987654
No 17
>KOG0034|consensus
Probab=99.47 E-value=4.7e-12 Score=87.36 Aligned_cols=125 Identities=21% Similarity=0.386 Sum_probs=104.3
Q ss_pred HHHHHHhcCCC-CCCCccHHHHHHHHHHH--HHHHHHHhhhCCCCCCc-ccHHHHHHHHHHcCCCCCH-HHHHHHHHhhC
Q psy1083 46 VRLMIGMFDKN-NTGQISFEDFGALWKYV--TDWQSCFKSFDKDNSGN-IDKLELKTALGTFGYRLGD-NTVDILMKKFD 120 (173)
Q Consensus 46 ~~~l~~~~d~~-~~g~v~~~ef~~~~~~~--~~~~~~f~~~D~~~~g~-i~~~e~~~~l~~~~~~~~~-~~~~~~~~~~~ 120 (173)
+...|.+++.+ ++|.++.+||..+.... .....+++.++++++|. |++++|...+.......+. ..++.+++.||
T Consensus 35 L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD 114 (187)
T KOG0034|consen 35 LYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYD 114 (187)
T ss_pred HHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhc
Confidence 44456667888 89999999999988543 24678999999999998 9999999999887655444 48999999999
Q ss_pred CCCCcceeHHHHHHHHHHH-------------HHHHHHhhccCCCCCCceeeeHHHHHHhhhccc
Q psy1083 121 HHGKGTILFDDFIHCCVML-------------NLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSLK 172 (173)
Q Consensus 121 ~~~~~~i~~~ef~~~l~~~-------------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~~ 172 (173)
.+++|.|+.+++...+... .-+...|.++|.++||.|+ ++||..++...|
T Consensus 115 ~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~Is--feEf~~~v~~~P 177 (187)
T KOG0034|consen 115 LDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKIS--FEEFCKVVEKQP 177 (187)
T ss_pred CCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCc--HHHHHHHHHcCc
Confidence 9999999999999988642 2245678999999999977 999999988876
No 18
>KOG0028|consensus
Probab=99.46 E-value=5.2e-12 Score=83.05 Aligned_cols=126 Identities=20% Similarity=0.342 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCCCCCCccHHHHHHHHH------HHHHHHHHHhhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHH
Q psy1083 44 ETVRLMIGMFDKNNTGQISFEDFGALWK------YVTDWQSCFKSFDKDNSGNIDKLELKTALGT-FGYRLGDNTVDILM 116 (173)
Q Consensus 44 ~~~~~l~~~~d~~~~g~v~~~ef~~~~~------~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~ 116 (173)
..+...|..++.+++|.|+++++...+. ..+++..+..-+|++++|.|++++|...+.. ++..-+.+++..+|
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~af 112 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAF 112 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHH
Confidence 5688889999999999999999944333 3467888899999999999999999998765 57767999999999
Q ss_pred HhhCCCCCcceeHHHHHHHHHHH------HHHHHHhhccCCCCCCceeeeHHHHHHhhhcc
Q psy1083 117 KKFDHHGKGTILFDDFIHCCVML------NLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSL 171 (173)
Q Consensus 117 ~~~~~~~~~~i~~~ef~~~l~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~ 171 (173)
+.+|.+++|+|+..+|......+ .++....+.+|.+++|-|. .+||+.++...
T Consensus 113 rl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevn--eeEF~~imk~t 171 (172)
T KOG0028|consen 113 RLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVN--EEEFIRIMKKT 171 (172)
T ss_pred HcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhccccccccc--HHHHHHHHhcC
Confidence 99999999999999999998865 4788889999999999965 89999987654
No 19
>KOG4223|consensus
Probab=99.45 E-value=1.4e-12 Score=94.95 Aligned_cols=157 Identities=22% Similarity=0.339 Sum_probs=123.0
Q ss_pred hhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH-------------
Q psy1083 6 PEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKY------------- 72 (173)
Q Consensus 6 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~------------- 72 (173)
.+.+..++..+|.+++|.|+.+|+..++.. .....-......-+..+|.+.+|.|+++++....-.
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~-s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQ-SQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 345888999999999999999999999886 223334455666688899999999999999875431
Q ss_pred -------HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH-----
Q psy1083 73 -------VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGY-RLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML----- 139 (173)
Q Consensus 73 -------~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~----- 139 (173)
+..-++-|+.-|.|++|.++.+||..+|..-.. .+.+--+.+-+...|.|++|+|+++||+.=+.+.
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~ 234 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEE 234 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCC
Confidence 123467899999999999999999999977432 3555667788888999999999999999977653
Q ss_pred ------HHHHHHhhccCCCCCCceeeeHHHHH
Q psy1083 140 ------NLLTTSFSQHDEDKDGVVTLHYEQFL 165 (173)
Q Consensus 140 ------~~~~~~f~~~d~~~~g~i~~~~~~~~ 165 (173)
.+-.+.+...|.|++|++. .+|-+
T Consensus 235 epeWv~~Ere~F~~~~DknkDG~L~--~dEl~ 264 (325)
T KOG4223|consen 235 EPEWVLTEREQFFEFRDKNKDGKLD--GDELL 264 (325)
T ss_pred CcccccccHHHHHHHhhcCCCCccC--HHHHh
Confidence 2345667788999999965 56544
No 20
>KOG2643|consensus
Probab=99.43 E-value=1.2e-12 Score=98.44 Aligned_cols=161 Identities=22% Similarity=0.381 Sum_probs=116.8
Q ss_pred hHHHHHHHhhCCCCCcceeHHHHHHHHhc------CC---------CCCCCHHHHH-HHHHhcCCCCCCCccHHHHHHHH
Q psy1083 7 EFLRDIFQRVDRDKSGLISTNELQMALSN------GT---------WKPFNAETVR-LMIGMFDKNNTGQISFEDFGALW 70 (173)
Q Consensus 7 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~------~~---------~~~~~~~~~~-~l~~~~d~~~~g~v~~~ef~~~~ 70 (173)
..++-+|+.||.|+||.|+.+||..+..- +. +......... .+...+..++++++++++|..++
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 33677899999999999999999987631 00 1111111111 22334567899999999999999
Q ss_pred HHHHH--HHHHHhhhCCCCCCcccHHHHHHHHHHcC-CCCC--HHHHHHHHHhhCCCCCcceeHHHHHHHHHHHH-----
Q psy1083 71 KYVTD--WQSCFKSFDKDNSGNIDKLELKTALGTFG-YRLG--DNTVDILMKKFDHHGKGTILFDDFIHCCVMLN----- 140 (173)
Q Consensus 71 ~~~~~--~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~~----- 140 (173)
..++. ++.-|..+|+..+|.|+..+|..++-... .+.. ...++.+-+.+..+ +..|+++||.++.+.+.
T Consensus 313 e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~df 391 (489)
T KOG2643|consen 313 ENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDF 391 (489)
T ss_pred HHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHH
Confidence 98754 67789999999999999999999876643 2221 22355666777755 67899999998875321
Q ss_pred ----------------------------------HHHHHhhccCCCCCCceeeeHHHHHHhhhc
Q psy1083 141 ----------------------------------LLTTSFSQHDEDKDGVVTLHYEQFLSMVFS 170 (173)
Q Consensus 141 ----------------------------------~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 170 (173)
.+.-+|+.||.|+||.++ ++||+.++.+
T Consensus 392 d~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS--~~EFl~Vmk~ 453 (489)
T KOG2643|consen 392 DIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLS--HKEFLAVMKR 453 (489)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCccc--HHHHHHHHHH
Confidence 133468999999999966 9999998864
No 21
>KOG0377|consensus
Probab=99.42 E-value=6.7e-12 Score=94.79 Aligned_cols=131 Identities=21% Similarity=0.299 Sum_probs=108.4
Q ss_pred hhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH-------------
Q psy1083 6 PEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKY------------- 72 (173)
Q Consensus 6 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~------------- 72 (173)
..++.+.|+.+|.+++|.|+.++...++....+.+++...+..-+ ...+.+|.|.|......+..
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 456889999999999999999999999998888888866555433 33466788999887765531
Q ss_pred -----HHHHHHHHhhhCCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH
Q psy1083 73 -----VTDWQSCFKSFDKDNSGNIDKLELKTALGTF----GYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 73 -----~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~ 138 (173)
...++.+|+..|+|++|.|+.+||..+++-+ ...++++++.++.+..|.++||+|++.||+...+.
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 1347899999999999999999999998875 45678999999999999999999999999887553
No 22
>KOG4223|consensus
Probab=99.42 E-value=1.2e-12 Score=95.22 Aligned_cols=125 Identities=20% Similarity=0.276 Sum_probs=106.6
Q ss_pred HHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH-----------HHHHHH
Q psy1083 10 RDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKY-----------VTDWQS 78 (173)
Q Consensus 10 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~-----------~~~~~~ 78 (173)
++.|+..|.+++|.+|.+||..++..--...+.+-.+..-+...|++++|.|+++||+.-+-. +.+-..
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~ 245 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQ 245 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHH
Confidence 456888999999999999999998763344566778888888999999999999999985532 224567
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHH
Q psy1083 79 CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134 (173)
Q Consensus 79 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~ 134 (173)
.+...|+|++|+++.+|+++.+...+......+...++...|.|++|++|++|.+.
T Consensus 246 F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 246 FFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 78899999999999999999998878778889999999999999999999998665
No 23
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.39 E-value=2.6e-12 Score=78.37 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhhCC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 72 YVTDWQSCFKSFDK-DNSGNIDKLELKTALGT-FGYRLGD-NTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 72 ~~~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
.+..++.+|+.||. +++|+|+..||+.+++. +|..++. .+++.+++.+|.|++|+|+|+||+..+..+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 35678999999999 99999999999999999 8877887 999999999999999999999999998765
No 24
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.36 E-value=5.3e-12 Score=73.14 Aligned_cols=62 Identities=39% Similarity=0.739 Sum_probs=53.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHH----HHHHHHhhCCCCCcceeHHHHHHHH
Q psy1083 75 DWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT----VDILMKKFDHHGKGTILFDDFIHCC 136 (173)
Q Consensus 75 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~ef~~~l 136 (173)
+++.+|+.+|++++|+|+.+||..++..++...++.. ++.+++.+|.+++|.|+++||.+++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3688999999999999999999999999987665544 4556999999999999999998874
No 25
>KOG0038|consensus
Probab=99.36 E-value=8.9e-12 Score=80.77 Aligned_cols=120 Identities=22% Similarity=0.393 Sum_probs=94.2
Q ss_pred ceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH-------HHHHHHhhhCCCCCCcccHHH
Q psy1083 23 LISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVT-------DWQSCFKSFDKDNSGNIDKLE 95 (173)
Q Consensus 23 ~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~-------~~~~~f~~~D~~~~g~i~~~e 95 (173)
.++.+.+.++-.. ..+|+ -+++...++.+|.|.++|++|+..++... ++..+|+++|.|++++|-..+
T Consensus 55 ~vp~e~i~kMPEL-kenpf----k~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~D 129 (189)
T KOG0038|consen 55 KVPFELIEKMPEL-KENPF----KRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDD 129 (189)
T ss_pred eecHHHHhhChhh-hcChH----HHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHH
Confidence 3555555554332 22332 35667778899999999999999887654 467899999999999999999
Q ss_pred HHHHHHHc-CCCCCHHHHH----HHHHhhCCCCCcceeHHHHHHHHHHHHHHHHHhh
Q psy1083 96 LKTALGTF-GYRLGDNTVD----ILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFS 147 (173)
Q Consensus 96 ~~~~l~~~-~~~~~~~~~~----~~~~~~~~~~~~~i~~~ef~~~l~~~~~~~~~f~ 147 (173)
+.+.+..+ ...++++++. +++...|.+|+|++++.+|.+.+.+.++....|.
T Consensus 130 L~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFlsTFH 186 (189)
T KOG0038|consen 130 LEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLSTFH 186 (189)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHhhhe
Confidence 99999886 3457877754 5677789999999999999999998888777765
No 26
>KOG0037|consensus
Probab=99.32 E-value=1.7e-11 Score=84.80 Aligned_cols=90 Identities=26% Similarity=0.434 Sum_probs=77.5
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy1083 8 FLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVTDWQSCFKSFDKDN 87 (173)
Q Consensus 8 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~f~~~D~~~ 87 (173)
.++.+|+.+|.|++|.|+..|++.+|.. ++..++++..+.+++++|..++|.+.|.+|+..+-.++.+-++|+.+|++.
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~-~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~q 203 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQALTQ-LGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRDTAQ 203 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHHHH-cCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4778889999999999999999999998 788899999999999998877899999999999999999999999999988
Q ss_pred CCccc--HHHHHH
Q psy1083 88 SGNID--KLELKT 98 (173)
Q Consensus 88 ~g~i~--~~e~~~ 98 (173)
.|.|+ .++|..
T Consensus 204 ~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 204 QGSITISYDDFLQ 216 (221)
T ss_pred ceeEEEeHHHHHH
Confidence 88654 445544
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.31 E-value=2.3e-11 Score=74.26 Aligned_cols=68 Identities=21% Similarity=0.406 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 72 YVTDWQSCFKSFD-KDNSG-NIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 72 ~~~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
.+..+..+|+.+| .+++| .|+.+||+.+|+. +|...++.+++.+++.++.+++|+|+|++|+.++...
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4567899999998 79999 5999999999999 8888999999999999999999999999999887643
No 28
>PLN02964 phosphatidylserine decarboxylase
Probab=99.31 E-value=5.1e-11 Score=95.75 Aligned_cols=92 Identities=22% Similarity=0.297 Sum_probs=78.9
Q ss_pred hHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHH---HHHHHHhcCCCCCCCccHHHHHHHHHHH------HHHH
Q psy1083 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAET---VRLMIGMFDKNNTGQISFEDFGALWKYV------TDWQ 77 (173)
Q Consensus 7 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~---~~~l~~~~d~~~~g~v~~~ef~~~~~~~------~~~~ 77 (173)
++++++|..+|++++|.+ +..+++.+.....++.+ ++.+|..+|.+++|.|+++||+.++..+ +++.
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~ 218 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKE 218 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHH
Confidence 458999999999999997 77777774313445554 8999999999999999999999988754 4699
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHH
Q psy1083 78 SCFKSFDKDNSGNIDKLELKTALGT 102 (173)
Q Consensus 78 ~~f~~~D~~~~g~i~~~e~~~~l~~ 102 (173)
.+|+.+|.|++|.|+.+||..++..
T Consensus 219 eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 219 ELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999999999999999988
No 29
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.30 E-value=1.5e-11 Score=71.20 Aligned_cols=62 Identities=31% Similarity=0.566 Sum_probs=51.2
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCC----HHHHHHHHHhcCCCCCCCccHHHHHHHH
Q psy1083 8 FLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFN----AETVRLMIGMFDKNNTGQISFEDFGALW 70 (173)
Q Consensus 8 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~----~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 70 (173)
+++++|+.+|.+++|.|+.+|+..++.. .+.+.+ .+.++.+++.+|++++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKH-LGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH-TTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHH-hcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999998 444433 3566666888999999999999998754
No 30
>KOG0030|consensus
Probab=99.24 E-value=1.3e-10 Score=74.76 Aligned_cols=96 Identities=13% Similarity=0.287 Sum_probs=83.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC--CCcceeHHHHHHHHHHH---------HH
Q psy1083 73 VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHH--GKGTILFDDFIHCCVML---------NL 141 (173)
Q Consensus 73 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~ef~~~l~~~---------~~ 141 (173)
..+++++|..||..++|.|+..+...+|+++|..+++.++.+.+..+..+ +-..|+|++|+-.+..+ ++
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 46789999999999999999999999999999999999999999998876 34789999999988754 46
Q ss_pred HHHHhhccCCCCCCceeeeHHHHHHhhhc
Q psy1083 142 LTTSFSQHDEDKDGVVTLHYEQFLSMVFS 170 (173)
Q Consensus 142 ~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 170 (173)
.....+.||+.++|.|. .+|...++..
T Consensus 90 fvegLrvFDkeg~G~i~--~aeLRhvLtt 116 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIM--GAELRHVLTT 116 (152)
T ss_pred HHHHHHhhcccCCccee--HHHHHHHHHH
Confidence 78889999999999976 7777766643
No 31
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.22 E-value=1.3e-10 Score=70.91 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhhCC-CC-CCcccHHHHHHHHHH---cCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 72 YVTDWQSCFKSFDK-DN-SGNIDKLELKTALGT---FGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 72 ~~~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
.+..+..+|+.||. ++ +|+|+.+||++++.. +|..++++++.++++..+.+++|+|+|++|+.++..+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 34567889999997 67 899999999999973 6888999999999999999999999999999988765
No 32
>KOG0031|consensus
Probab=99.22 E-value=4.1e-10 Score=73.75 Aligned_cols=93 Identities=22% Similarity=0.429 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH-------HHHHH
Q psy1083 71 KYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM-------LNLLT 143 (173)
Q Consensus 71 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~-------~~~~~ 143 (173)
.++++++++|...|.|++|.|+.++++.++..+|..+++++++.++... .|.|+|--|+-.+.. ...|.
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~ 104 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVIL 104 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHH
Confidence 4688999999999999999999999999999999999999999998865 478988888877754 25689
Q ss_pred HHhhccCCCCCCceeeeHHHHHHhhh
Q psy1083 144 TSFSQHDEDKDGVVTLHYEQFLSMVF 169 (173)
Q Consensus 144 ~~f~~~d~~~~g~i~~~~~~~~~~~~ 169 (173)
.+|..||.++.|.|- .+.+..+++
T Consensus 105 ~AF~~FD~~~~G~I~--~d~lre~Lt 128 (171)
T KOG0031|consen 105 NAFKTFDDEGSGKID--EDYLRELLT 128 (171)
T ss_pred HHHHhcCccCCCccC--HHHHHHHHH
Confidence 999999999999975 455555544
No 33
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.22 E-value=5.6e-11 Score=72.54 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=59.5
Q ss_pred HHHHHHHhhCC-CCCcceeHHHHHHHHhcCCCCCCCH-HHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q psy1083 8 FLRDIFQRVDR-DKSGLISTNELQMALSNGTWKPFNA-ETVRLMIGMFDKNNTGQISFEDFGALWKYVT 74 (173)
Q Consensus 8 ~~~~~F~~~D~-~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~ 74 (173)
.+..+|+.||. +++|.|+..|++.++...++..++. ..+..+++.+|.+++|.|+|+||+.++..+.
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 48899999999 9999999999999998734455666 8999999999999999999999999887763
No 34
>KOG0751|consensus
Probab=99.18 E-value=5.2e-10 Score=85.83 Aligned_cols=166 Identities=18% Similarity=0.350 Sum_probs=125.6
Q ss_pred CChhHHHHHHHhhC---CCCCcceeHHHHHHHHhcCCCC-CCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH----HH
Q psy1083 4 PPPEFLRDIFQRVD---RDKSGLISTNELQMALSNGTWK-PFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV----TD 75 (173)
Q Consensus 4 ~~~~~~~~~F~~~D---~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~----~~ 75 (173)
..+++++.+|..+. .++...++.++|....-.+.+. +.++...+.+-...|..++|-|+|+||+.+=..+ ..
T Consensus 30 a~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal 109 (694)
T KOG0751|consen 30 ADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDAL 109 (694)
T ss_pred CChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHH
Confidence 46788999998873 4566689999998866554444 4556666666666788889999999999865543 35
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH--HHHHHHhhccC
Q psy1083 76 WQSCFKSFDKDNSGNIDKLELKTALGTFGYR---LGDNTVDILMKKFDHHGKGTILFDDFIHCCVML--NLLTTSFSQHD 150 (173)
Q Consensus 76 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~--~~~~~~f~~~d 150 (173)
.+.+|..+|+.++|.++.+++.+++.....+ +-....+.+-..++.+....++|.+|.+++... +.-.++|+..|
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d 189 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKD 189 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999885432 222333445556766667789999999999854 56789999999
Q ss_pred CCCCCceeeeHHHHHHhhhcc
Q psy1083 151 EDKDGVVTLHYEQFLSMVFSL 171 (173)
Q Consensus 151 ~~~~g~i~~~~~~~~~~~~~~ 171 (173)
+.++|.|| -..|...+.++
T Consensus 190 ~~~ng~is--~Ldfq~imvt~ 208 (694)
T KOG0751|consen 190 KAKNGFIS--VLDFQDIMVTI 208 (694)
T ss_pred ccCCCeee--eechHhhhhhh
Confidence 99999987 45666665543
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=99.18 E-value=3.4e-10 Score=91.12 Aligned_cols=93 Identities=16% Similarity=0.222 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHhhCCCCCcceeHHHHHHHHHHH------HH
Q psy1083 72 YVTDWQSCFKSFDKDNSGNIDKLELKTALGTFG-YRLGDNT---VDILMKKFDHHGKGTILFDDFIHCCVML------NL 141 (173)
Q Consensus 72 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~~~~~~~~i~~~ef~~~l~~~------~~ 141 (173)
..+++.++|..+|++++|.+ +..+++.+| ..+++.+ ++.++..+|.+++|.|+++||+..+... ++
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHH
Confidence 35678999999999999997 888898889 5788776 7899999999999999999999998753 46
Q ss_pred HHHHhhccCCCCCCceeeeHHHHHHhhhc
Q psy1083 142 LTTSFSQHDEDKDGVVTLHYEQFLSMVFS 170 (173)
Q Consensus 142 ~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 170 (173)
+..+|+.+|.+++|.|+ .+|+..++..
T Consensus 217 L~eaFk~fDkDgdG~Is--~dEL~~vL~~ 243 (644)
T PLN02964 217 KEELFKAADLNGDGVVT--IDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCcCC--HHHHHHHHHh
Confidence 89999999999999977 8999888765
No 36
>KOG2562|consensus
Probab=99.16 E-value=3.7e-10 Score=85.91 Aligned_cols=155 Identities=21% Similarity=0.311 Sum_probs=115.9
Q ss_pred CCChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCC-CC-------------CHHHHHHHHHhcCCCCCCCccHHHHHH
Q psy1083 3 MPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWK-PF-------------NAETVRLMIGMFDKNNTGQISFEDFGA 68 (173)
Q Consensus 3 m~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~-~~-------------~~~~~~~l~~~~d~~~~g~v~~~ef~~ 68 (173)
|...+.+.+++..++..+.+.+...+|+..+..+... ++ ..-.++++|-.+++.+.|+|+..+...
T Consensus 170 ~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~ 249 (493)
T KOG2562|consen 170 MLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLR 249 (493)
T ss_pred hHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHH
Confidence 3455667888888988899999988888888754222 11 124566677778999999999999775
Q ss_pred --HHHHH------------------HHHHH---HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH----hhCC
Q psy1083 69 --LWKYV------------------TDWQS---CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMK----KFDH 121 (173)
Q Consensus 69 --~~~~~------------------~~~~~---~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~----~~~~ 121 (173)
++..+ +.... .|..+|+|++|.|+.+++...-.. .++.-.++.+|. ....
T Consensus 250 snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~ 326 (493)
T KOG2562|consen 250 SNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTV 326 (493)
T ss_pred hHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhcccccee
Confidence 22211 12233 378889999999999999987743 356777888888 3344
Q ss_pred CCCcceeHHHHHHHHHHH------HHHHHHhhccCCCCCCceeee
Q psy1083 122 HGKGTILFDDFIHCCVML------NLLTTSFSQHDEDKDGVVTLH 160 (173)
Q Consensus 122 ~~~~~i~~~ef~~~l~~~------~~~~~~f~~~d~~~~g~i~~~ 160 (173)
..+|+|+|++|+.++... +.+..+|+..|.+++|.++..
T Consensus 327 ~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~ 371 (493)
T KOG2562|consen 327 KVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLN 371 (493)
T ss_pred eecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHH
Confidence 568999999999999876 458899999999999998743
No 37
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.16 E-value=3.7e-10 Score=69.72 Aligned_cols=67 Identities=27% Similarity=0.480 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 73 VTDWQSCFKSFD-KDNSG-NIDKLELKTALGT-FG----YRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 73 ~~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
.+.++.+|+.+| .+++| .|+..|++.+++. +| ..+++.+++.++..++.+++|.|+|++|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 467899999997 99999 5999999999986 43 35688999999999999999999999999987754
No 38
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.15 E-value=5e-10 Score=68.36 Aligned_cols=68 Identities=24% Similarity=0.329 Sum_probs=59.5
Q ss_pred hHHHHHHHhhC-CCCCc-ceeHHHHHHHHhc----CCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q psy1083 7 EFLRDIFQRVD-RDKSG-LISTNELQMALSN----GTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVT 74 (173)
Q Consensus 7 ~~~~~~F~~~D-~~~~g-~i~~~e~~~~l~~----~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~ 74 (173)
..++++|+.|| .+++| .|+.+|++.++++ ..+...++..+..+++.+|.+++|.|+|++|+.++..+.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 35899999998 78999 6999999999997 345566889999999999999999999999999887653
No 39
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.15 E-value=4.5e-10 Score=69.39 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 72 YVTDWQSCFKSFD-KDNSG-NIDKLELKTALGTF-----GYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 72 ~~~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
.+..+..+|+.|| .+++| .|+..||+.+++.. ....++.+++.+++.+|.+++|.|+|+||+.++..+
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3566789999999 78998 59999999999772 334578899999999999999999999999998765
No 40
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.14 E-value=6.3e-10 Score=67.94 Aligned_cols=66 Identities=14% Similarity=0.316 Sum_probs=57.6
Q ss_pred HHHHHHhhCC-CC-CcceeHHHHHHHHhc--CCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q psy1083 9 LRDIFQRVDR-DK-SGLISTNELQMALSN--GTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVT 74 (173)
Q Consensus 9 ~~~~F~~~D~-~~-~g~i~~~e~~~~l~~--~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~ 74 (173)
+-.+|..||. ++ +|.|+.+||+.++.. ..+.+.+++++..+++.+|.+++|.|+|++|+.++..+.
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 7778999987 55 889999999999963 146778999999999999999999999999999887664
No 41
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.14 E-value=1.1e-09 Score=67.88 Aligned_cols=68 Identities=21% Similarity=0.398 Sum_probs=60.3
Q ss_pred HHHHHHHHhhhCC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHH
Q psy1083 73 VTDWQSCFKSFDK-DN-SGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLN 140 (173)
Q Consensus 73 ~~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~~ 140 (173)
...+..+|..+|. ++ +|.|+..|++.+++. ++..++..+++.++..++.+++|.|+|++|+..+....
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4568899999997 87 699999999999986 46678999999999999999999999999999887654
No 42
>KOG0036|consensus
Probab=99.13 E-value=2.5e-09 Score=80.43 Aligned_cols=123 Identities=16% Similarity=0.262 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcCCCCCCCccHHHHHHHHHHH-------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q psy1083 43 AETVRLMIGMFDKNNTGQISFEDFGALWKYV-------TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDIL 115 (173)
Q Consensus 43 ~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 115 (173)
+..++.+|+.+|.+++|.|++.+....+..+ +....+|...|.|.+|.++.+||+..+.. .+.++-.+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHH
Confidence 4678999999999999999999988766543 35788999999999999999999999865 35677889
Q ss_pred HHhhCCCCCcceeHHHHHHHHHHH------HHHHHHhhccCCCCCCceeeeHHHHHHhhhccc
Q psy1083 116 MKKFDHHGKGTILFDDFIHCCVML------NLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSLK 172 (173)
Q Consensus 116 ~~~~~~~~~~~i~~~ef~~~l~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~~ 172 (173)
|...|.++||+|+.+|...++... +.....|+..|+++++.|. +.||.+..+.+|
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~--~~e~rd~~ll~p 148 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATID--LEEWRDHLLLYP 148 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeec--cHHHHhhhhcCC
Confidence 999999999999999999999854 5677788999998888865 899999988877
No 43
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.12 E-value=1e-09 Score=67.80 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=56.6
Q ss_pred HHHHHHhhC-CCCCc-ceeHHHHHHHHhcCC----CCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHH
Q psy1083 9 LRDIFQRVD-RDKSG-LISTNELQMALSNGT----WKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVTD 75 (173)
Q Consensus 9 ~~~~F~~~D-~~~~g-~i~~~e~~~~l~~~~----~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~ 75 (173)
+.++|+.|| .+++| .|+.+|++.++.... ....++..+..+++.+|.+++|.|+|++|+.++..+.-
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 788899998 67898 599999999997522 23347789999999999999999999999999887643
No 44
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.12 E-value=7.5e-10 Score=68.91 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHHHHHH
Q psy1083 72 YVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTT 144 (173)
Q Consensus 72 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~~~~~~ 144 (173)
....+..+|..+|.+++|.|+.++++.+++..+ ++..+++.++..++.+++|.|+|++|+.++........
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHc
Confidence 456789999999999999999999999999876 78899999999999999999999999999886654443
No 45
>KOG4251|consensus
Probab=99.12 E-value=2e-10 Score=80.93 Aligned_cols=162 Identities=20% Similarity=0.252 Sum_probs=111.5
Q ss_pred ChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCC--CHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH---------
Q psy1083 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPF--NAETVRLMIGMFDKNNTGQISFEDFGALWKYV--------- 73 (173)
Q Consensus 5 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~--~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~--------- 73 (173)
++..+..+|.+.|.+.+|.|+..|+++.++.....++ ...+....|+..|++++|.|++++|.--+...
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 3455889999999999999999999999886332232 23456778889999999999999998755321
Q ss_pred -----------HH--------HHHHHhhhCC-CCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCcceeHHHH
Q psy1083 74 -----------TD--------WQSCFKSFDK-DNSGNIDKLELKTALGTFG-YRLGDNTVDILMKKFDHHGKGTILFDDF 132 (173)
Q Consensus 74 -----------~~--------~~~~f~~~D~-~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ef 132 (173)
++ +..-+.+.|. ..+-.++..||..+|..-. -.+-...++.+++.++.+++.+++-.+|
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeF 258 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEF 258 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhh
Confidence 01 1112222232 2334566688888885521 1244566788899999999999999999
Q ss_pred HHHHHH--------------HHHHHHHh-hccCCCCCCceeeeHHHHHHhh
Q psy1083 133 IHCCVM--------------LNLLTTSF-SQHDEDKDGVVTLHYEQFLSMV 168 (173)
Q Consensus 133 ~~~l~~--------------~~~~~~~f-~~~d~~~~g~i~~~~~~~~~~~ 168 (173)
++.... .+.-.+-| ...|.+++|+.| ..+...++
T Consensus 259 islpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivT--aeELe~y~ 307 (362)
T KOG4251|consen 259 ISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVT--AEELEDYV 307 (362)
T ss_pred hcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCcccee--HHHHHhhc
Confidence 987531 22334455 456999999977 66655553
No 46
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.11 E-value=6.1e-10 Score=61.79 Aligned_cols=52 Identities=37% Similarity=0.686 Sum_probs=48.8
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH
Q psy1083 87 NSGNIDKLELKTALGTFGYR-LGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 87 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~ 138 (173)
.+|.|+.++|+.++..+|.. ++++++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999999864
No 47
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.09 E-value=7.7e-10 Score=64.05 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=55.6
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 77 QSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 77 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
+.+|..+|++++|.|+.+|+..++...| .+.++++.++..++.+++|.|++++|+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5789999999999999999999999887 488889999999999999999999999987654
No 48
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.05 E-value=3e-09 Score=65.64 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=60.0
Q ss_pred hhHHHHHHHhhC-CCCCc-ceeHHHHHHHHhc-C---CCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHH
Q psy1083 6 PEFLRDIFQRVD-RDKSG-LISTNELQMALSN-G---TWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVTDWQ 77 (173)
Q Consensus 6 ~~~~~~~F~~~D-~~~~g-~i~~~e~~~~l~~-~---~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~ 77 (173)
.++++++|+.+| .+++| .|+..|++.+++. + .+...++..+..+++.+|.+++|.|+|++|+.++..+....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~ 85 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVAC 85 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 355999999997 99999 5999999999974 2 12245788999999999999999999999999888765443
No 49
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.04 E-value=1.2e-09 Score=68.03 Aligned_cols=69 Identities=13% Similarity=0.279 Sum_probs=61.0
Q ss_pred hHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHH
Q psy1083 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVTDWQS 78 (173)
Q Consensus 7 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~ 78 (173)
++++++|..+|.+++|.|+.++++.+++. . ++++.++..++..+|.+++|.|++++|+.++..+..+..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~-~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLK-S--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHH-c--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHc
Confidence 44899999999999999999999999987 3 468889999999999999999999999999887766543
No 50
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.03 E-value=2.2e-09 Score=65.74 Aligned_cols=68 Identities=24% Similarity=0.345 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhCC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 72 YVTDWQSCFKSFDK--DNSGNIDKLELKTALGT-FGYR----LGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 72 ~~~~~~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
.++.+..+|..+|+ +++|.|+.+++..+++. .|.. ++..+++.++..++.+++|.|+|++|+..+...
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 35668899999999 89999999999999976 4433 458999999999999999999999999988754
No 51
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.02 E-value=4.1e-09 Score=64.45 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=57.9
Q ss_pred HHHHHHHHHhh-hCCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 72 YVTDWQSCFKS-FDKDNSG-NIDKLELKTALGTF-----GYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 72 ~~~~~~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
.+..+..+|+. .|.+++| .|+.+||+.++... +...++.+++.++..++.+++|+|+|+||+.++..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35567899998 6788876 99999999999885 335677899999999999999999999999987754
No 52
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.00 E-value=4.3e-09 Score=59.39 Aligned_cols=61 Identities=34% Similarity=0.666 Sum_probs=56.7
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q psy1083 76 WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCC 136 (173)
Q Consensus 76 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l 136 (173)
+..+|..+|.+++|.|+.+++..++..++...+...+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999998875
No 53
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.00 E-value=5.1e-09 Score=64.89 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=59.2
Q ss_pred hHHHHHHHhhCC-CC-CcceeHHHHHHHHhcC----CCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Q psy1083 7 EFLRDIFQRVDR-DK-SGLISTNELQMALSNG----TWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVTDW 76 (173)
Q Consensus 7 ~~~~~~F~~~D~-~~-~g~i~~~e~~~~l~~~----~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~ 76 (173)
.+++++|..+|. ++ +|.|+..|++.+++.. .+...+++.+..+++.+|.+++|.|+|++|+.++....-+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 458999999997 86 7999999999998752 2346688999999999999999999999999988765433
No 54
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.99 E-value=2.9e-09 Score=61.59 Aligned_cols=62 Identities=23% Similarity=0.401 Sum_probs=54.9
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV 73 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 73 (173)
++++|..+|.+++|.|+.+|+..++.. .+ .+...+..+++.++.+++|.|++++|+..+..+
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~-~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGK-SG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHH-cC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 367899999999999999999999987 33 488899999999999999999999999987654
No 55
>PF14658 EF-hand_9: EF-hand domain
Probab=98.99 E-value=3.8e-09 Score=59.94 Aligned_cols=62 Identities=23% Similarity=0.424 Sum_probs=57.8
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCC-cceeHHHHHHHHHHH
Q psy1083 78 SCFKSFDKDNSGNIDKLELKTALGTFGY-RLGDNTVDILMKKFDHHGK-GTILFDDFIHCCVML 139 (173)
Q Consensus 78 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~i~~~ef~~~l~~~ 139 (173)
.+|..+|+++.|.|...++..+|++++. .+.+.+++.+...+|+++. |.|+++.|+..|+.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 4799999999999999999999999988 8999999999999999988 999999999998753
No 56
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.98 E-value=4.4e-09 Score=64.36 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=57.8
Q ss_pred hHHHHHHHhhCC--CCCcceeHHHHHHHHhcCCCCC----CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q psy1083 7 EFLRDIFQRVDR--DKSGLISTNELQMALSNGTWKP----FNAETVRLMIGMFDKNNTGQISFEDFGALWKYVT 74 (173)
Q Consensus 7 ~~~~~~F~~~D~--~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~ 74 (173)
++++++|..+|. +++|.|+.+++..+++...+.+ .+...+..++..+|.+++|.|+|++|+.++....
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 448889999999 8999999999999997523322 3588999999999999999999999999887653
No 57
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.94 E-value=5.7e-09 Score=57.82 Aligned_cols=52 Identities=31% Similarity=0.464 Sum_probs=47.0
Q ss_pred CCcceeHHHHHHHHhcCCCCC-CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q psy1083 20 KSGLISTNELQMALSNGTWKP-FNAETVRLMIGMFDKNNTGQISFEDFGALWKY 72 (173)
Q Consensus 20 ~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 72 (173)
++|.|+.++|+.++.. .+.+ +++.++..++..+|.+++|.|+++||+..+..
T Consensus 1 ~~G~i~~~~~~~~l~~-~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSK-LGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHH-TTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHH-hCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4799999999999976 5666 99999999999999999999999999998753
No 58
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.94 E-value=6.8e-09 Score=58.56 Aligned_cols=61 Identities=38% Similarity=0.584 Sum_probs=55.4
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALW 70 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 70 (173)
++.+|..+|.+++|.|+.+++..++.. .+.+.+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKS-LGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 578899999999999999999999998 5677889999999999999999999999998764
No 59
>KOG2643|consensus
Probab=98.89 E-value=1.2e-08 Score=77.40 Aligned_cols=129 Identities=22% Similarity=0.378 Sum_probs=100.0
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCC--CHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH---HHHHHHHhhh
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPF--NAETVRLMIGMFDKNNTGQISFEDFGALWKYV---TDWQSCFKSF 83 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~--~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~---~~~~~~f~~~ 83 (173)
++--|..+|+..+|.|+..+|..++-.....+. ....++++-++++.++ ..||+.||..++.-+ ..+..+...|
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~-~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy 398 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDG-KGISLQEFKAFFRFLNNLNDFDIALRFY 398 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCC-CCcCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444588899888899999999998865332232 2346777888886664 459999999877644 4455555555
Q ss_pred CCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 84 DKDNSGNIDKLELKTALGT-FGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 84 D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
- ..++.|+..+|+.+... .|..+++.-++.+|..||.|+||.++.+||+..|..+
T Consensus 399 ~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 399 H-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred H-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 3 46789999999998877 4888998899999999999999999999999999764
No 60
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.88 E-value=1.3e-08 Score=65.17 Aligned_cols=62 Identities=16% Similarity=0.326 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHH
Q psy1083 72 YVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCV 137 (173)
Q Consensus 72 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~ 137 (173)
....+..+|..+|.|++|.|+.+|+..+. ....+..+..++..+|.+++|.|+++||..++.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 34678999999999999999999999876 235577788999999999999999999999983
No 61
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.84 E-value=3.3e-08 Score=60.47 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=56.0
Q ss_pred HHHHHHHh-hCCCCCc-ceeHHHHHHHHhcCC----CCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q psy1083 8 FLRDIFQR-VDRDKSG-LISTNELQMALSNGT----WKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVT 74 (173)
Q Consensus 8 ~~~~~F~~-~D~~~~g-~i~~~e~~~~l~~~~----~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~ 74 (173)
.+..+|+. .|.+++| .|+.+||+.++...+ ....++..+..+++.+|.+++|.|+|++|+.++..+.
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 38889999 5676765 999999999998732 2345678999999999999999999999999887663
No 62
>PF14658 EF-hand_9: EF-hand domain
Probab=98.81 E-value=3.1e-08 Score=56.24 Aligned_cols=62 Identities=21% Similarity=0.353 Sum_probs=56.1
Q ss_pred HHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCC-CCccHHHHHHHHHH
Q psy1083 11 DIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNT-GQISFEDFGALWKY 72 (173)
Q Consensus 11 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~-g~v~~~ef~~~~~~ 72 (173)
.+|..+|.++.|.|..+++..+|+.+.+...++..++.+...+|+++. |.|++++|+..+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 369999999999999999999999966657789999999999999988 99999999998764
No 63
>KOG2562|consensus
Probab=98.79 E-value=1.1e-07 Score=72.77 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=95.8
Q ss_pred HHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHh----cCCCCCCCccHHHHHHHHHHHH------HHHHHHhh
Q psy1083 13 FQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGM----FDKNNTGQISFEDFGALWKYVT------DWQSCFKS 82 (173)
Q Consensus 13 F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~----~d~~~~g~v~~~ef~~~~~~~~------~~~~~f~~ 82 (173)
|-.+|.|++|.|+.+++...- ...++...+.++|.. .-.-.+|+++|++|+-++..++ .+++-|+.
T Consensus 284 FweLD~Dhd~lidk~~L~ry~----d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrc 359 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYG----DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRC 359 (493)
T ss_pred HhhhccccccccCHHHHHHHh----ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheee
Confidence 778899999999999998863 345678889999982 3344578999999999886553 58999999
Q ss_pred hCCCCCCcccHHHHHHHHHHc-------CCC--CCHHHHHHHHHhhCCCCCcceeHHHHHHH
Q psy1083 83 FDKDNSGNIDKLELKTALGTF-------GYR--LGDNTVDILMKKFDHHGKGTILFDDFIHC 135 (173)
Q Consensus 83 ~D~~~~g~i~~~e~~~~l~~~-------~~~--~~~~~~~~~~~~~~~~~~~~i~~~ef~~~ 135 (173)
+|.+++|.|+..|++.+...+ +.. +-+..+.+++....+...++|++++|...
T Consensus 360 lDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 360 LDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred eeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 999999999999998877663 221 23566778999999888999999998874
No 64
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.79 E-value=4.2e-08 Score=59.97 Aligned_cols=67 Identities=15% Similarity=0.363 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhCCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 73 VTDWQSCFKSFDKD--NSGNIDKLELKTALG-TFGYRLG----DNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 73 ~~~~~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
+..+..+|+.++.. ++|.|+.+||+.++. .++..++ +.+++.++..++.+++|.|+|++|+..+...
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45678889999865 489999999999997 4555555 8999999999999999999999999987643
No 65
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.77 E-value=3.4e-08 Score=60.36 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=55.7
Q ss_pred HHHHHHHhhCCC--CCcceeHHHHHHHHhcCCCCCCC----HHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q psy1083 8 FLRDIFQRVDRD--KSGLISTNELQMALSNGTWKPFN----AETVRLMIGMFDKNNTGQISFEDFGALWKYV 73 (173)
Q Consensus 8 ~~~~~F~~~D~~--~~g~i~~~e~~~~l~~~~~~~~~----~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 73 (173)
.+-.+|+.|+.. ++|.|+.+|++.++...++..++ +..+..+++.+|.+++|.|+|++|+.++..+
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 377889999855 58999999999999743455555 8999999999999999999999999987754
No 66
>KOG0040|consensus
Probab=98.74 E-value=4.7e-08 Score=83.44 Aligned_cols=120 Identities=18% Similarity=0.344 Sum_probs=94.1
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCC-------CHHHHHHHHHhcCCCCCCCccHHHHHHHHHH--------
Q psy1083 8 FLRDIFQRVDRDKSGLISTNELQMALSNGTWKPF-------NAETVRLMIGMFDKNNTGQISFEDFGALWKY-------- 72 (173)
Q Consensus 8 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~-------~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~-------- 72 (173)
|+.-+|..||++.+|.++.++|+.+|++++ ..+ ++..+..++...|++.+|+|+..+|+.++-.
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslg-Y~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLG-YDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcC-CCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 467789999999999999999999999843 332 3458999999999999999999999998853
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh----CC----CCCcceeHHHHHHHH
Q psy1083 73 VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKF----DH----HGKGTILFDDFIHCC 136 (173)
Q Consensus 73 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----~~----~~~~~i~~~ef~~~l 136 (173)
.++++.+|+.+|. +..+|+..++++.| +++..+.++..+ ++ ...+.+.|.+|++.+
T Consensus 2333 ~~eIE~AfraL~a-~~~yvtke~~~~~l-------treqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA-GKPYVTKEELYQNL-------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred hHHHHHHHHHhhc-CCccccHHHHHhcC-------CHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 2479999999998 88899999987544 445555444443 32 224468899988764
No 67
>KOG0041|consensus
Probab=98.73 E-value=2.1e-07 Score=63.84 Aligned_cols=101 Identities=26% Similarity=0.423 Sum_probs=78.6
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH--
Q psy1083 63 FEDFGALWK-YVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML-- 139 (173)
Q Consensus 63 ~~ef~~~~~-~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~-- 139 (173)
|.+|..+-. .++.+..+|+.+|.+.+|+|+..|++.+|..+|.+-+.--++.++...+.|.+|+|+|.+|+=..+..
T Consensus 87 yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 87 YTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 444553332 46788999999999999999999999999999999999999999999999999999999998877643
Q ss_pred ------HHHHHH--hhccCCCCCCceeeeHHHHH
Q psy1083 140 ------NLLTTS--FSQHDEDKDGVVTLHYEQFL 165 (173)
Q Consensus 140 ------~~~~~~--f~~~d~~~~g~i~~~~~~~~ 165 (173)
..+..+ ....|+...|... -.+|.
T Consensus 167 gEL~~ds~~~~LAr~~eVDVskeGV~G--AknFF 198 (244)
T KOG0041|consen 167 GELQEDSGLLRLARLSEVDVSKEGVSG--AKNFF 198 (244)
T ss_pred cccccchHHHHHHHhcccchhhhhhhh--HHHHH
Confidence 123333 2347777777732 44444
No 68
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.72 E-value=8.4e-08 Score=61.43 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=28.0
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALW 70 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 70 (173)
+.-+|..+|.+++|.|+.+|+..+. ....+..+..++..+|.+++|.||++||+..+
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~-----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR-----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH-----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4445555555555555555555443 01123444445555555555555555555444
No 69
>KOG0751|consensus
Probab=98.71 E-value=4.8e-07 Score=69.92 Aligned_cols=155 Identities=18% Similarity=0.253 Sum_probs=106.5
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCC-----CCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH--HHHHHHHHh
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWK-----PFNAETVRLMIGMFDKNNTGQISFEDFGALWKY--VTDWQSCFK 81 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~-----~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~--~~~~~~~f~ 81 (173)
+..+|+.||..++|.++.+++..++.+.... ..+.+.++..|. ......++|.+|..++.. .+..+++|+
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg---~~~~r~~ny~~f~Q~lh~~~~E~~~qafr 186 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG---DIRKRHLNYAEFTQFLHEFQLEHAEQAFR 186 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhh---hHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888888888752211 123344555443 233456888888888774 456889999
Q ss_pred hhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh-hCCCCCcceeHHHH---HHHHHHHHHHHHHhhcc-CCCCCCc
Q psy1083 82 SFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKK-FDHHGKGTILFDDF---IHCCVMLNLLTTSFSQH-DEDKDGV 156 (173)
Q Consensus 82 ~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~ef---~~~l~~~~~~~~~f~~~-d~~~~g~ 156 (173)
..|+.++|.|+.-++.+++..+..++...-++..+-. .+.+...++++..| -++|..++.+++.+..+ +..+|..
T Consensus 187 ~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~afnslL~~melirk~y~s~~~~~~d~~ 266 (694)
T KOG0751|consen 187 EKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAFNSLLNNMELIRKIYSSLAGTRKDVE 266 (694)
T ss_pred HhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHHHHHHhhHHHHHHHHHHhcccccchh
Confidence 9999999999999999999998777776666655544 44444556666554 45566677777777655 4444545
Q ss_pred eeeeHHHHHHhh
Q psy1083 157 VTLHYEQFLSMV 168 (173)
Q Consensus 157 i~~~~~~~~~~~ 168 (173)
+ +.+|+....
T Consensus 267 ~--~kdq~~~~a 276 (694)
T KOG0751|consen 267 V--TKDQFSLAA 276 (694)
T ss_pred h--hHHHHHHHH
Confidence 4 477776554
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.58 E-value=8.1e-07 Score=54.01 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=56.2
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcC----CCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNG----TWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVTDW 76 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~ 76 (173)
+-.+|..|. .+.+.++..||+.++..- ...+..+..+..+++.+|.+++|.|+|.||+.++..+...
T Consensus 10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 10 MMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 677899996 557799999999999752 2344578999999999999999999999999999877543
No 71
>KOG0038|consensus
Probab=98.53 E-value=4.5e-06 Score=54.61 Aligned_cols=149 Identities=16% Similarity=0.221 Sum_probs=97.9
Q ss_pred CCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhc------------CC--CCCCCccHHHHHHHHHHH--HHHHHHHhh
Q psy1083 19 DKSGLISTNELQMALSNGTWKPFNAETVRLMIGMF------------DK--NNTGQISFEDFGALWKYV--TDWQSCFKS 82 (173)
Q Consensus 19 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~------------d~--~~~g~v~~~ef~~~~~~~--~~~~~~f~~ 82 (173)
++.++.|.+++...-.. .-++...+-+++.++ .. ...-+|.++.....-... ..-+.+...
T Consensus 3 NK~~vFT~eqLd~YQDC---TFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELkenpfk~ri~e~ 79 (189)
T KOG0038|consen 3 NKQTVFTEEQLDEYQDC---TFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKENPFKRRICEV 79 (189)
T ss_pred CccceeeHHHHhhhccc---ccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcChHHHHHHHH
Confidence 34455666666554322 223455555555543 11 122345555443322111 123466677
Q ss_pred hCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHH-----------HHHHHhhccC
Q psy1083 83 FDKDNSGNIDKLELKTALGTFGYR-LGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLN-----------LLTTSFSQHD 150 (173)
Q Consensus 83 ~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~~-----------~~~~~f~~~d 150 (173)
+..||.|.++.++|..++.-+... +-+-.+.-.++.+|-++++.|--.+....++++. ...+...+.|
T Consensus 80 FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD 159 (189)
T KOG0038|consen 80 FSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEAD 159 (189)
T ss_pred hccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhc
Confidence 788999999999999988775432 3334456678889999999999999999988642 2456778899
Q ss_pred CCCCCceeeeHHHHHHhhhccc
Q psy1083 151 EDKDGVVTLHYEQFLSMVFSLK 172 (173)
Q Consensus 151 ~~~~g~i~~~~~~~~~~~~~~~ 172 (173)
.+|+|.++ +++|..++++.|
T Consensus 160 ~DgDgkl~--~~eFe~~i~raP 179 (189)
T KOG0038|consen 160 LDGDGKLS--FAEFEHVILRAP 179 (189)
T ss_pred CCCCCccc--HHHHHHHHHhCc
Confidence 99999965 999999988776
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.52 E-value=1.9e-06 Score=52.44 Aligned_cols=66 Identities=18% Similarity=0.316 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 73 VTDWQSCFKSFDKDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 73 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
+..+..+|+.|. .+.+.++..||+.++.. ++..-++..++.++...|.++||+|+|.||+.++..+
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456778898887 45679999999999976 2344578889999999999999999999999998765
No 73
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.50 E-value=2.5e-07 Score=44.19 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=23.3
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhc
Q psy1083 8 FLRDIFQRVDRDKSGLISTNELQMALSN 35 (173)
Q Consensus 8 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 35 (173)
|++++|+.+|.+++|.|+.+||..+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5778888888888888888888888765
No 74
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.49 E-value=2.5e-07 Score=44.15 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=16.9
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy1083 76 WQSCFKSFDKDNSGNIDKLELKTALGT 102 (173)
Q Consensus 76 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 102 (173)
+..+|+.+|+|++|.|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455666666666666666666666554
No 75
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.35 E-value=8.7e-07 Score=43.06 Aligned_cols=30 Identities=43% Similarity=0.665 Sum_probs=24.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHH-HcC
Q psy1083 75 DWQSCFKSFDKDNSGNIDKLELKTALG-TFG 104 (173)
Q Consensus 75 ~~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 104 (173)
+++.+|+.+|.+++|.|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367899999999999999999999998 554
No 76
>KOG4251|consensus
Probab=98.26 E-value=2e-06 Score=61.01 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=92.9
Q ss_pred CCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH----H----------H-HHHHHHHhhhC
Q psy1083 20 KSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWK----Y----------V-TDWQSCFKSFD 84 (173)
Q Consensus 20 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~----~----------~-~~~~~~f~~~D 84 (173)
.+-.+|..||..++..-.....-......+.+.+|.+++..++..+|++... . . +..++.=..+|
T Consensus 212 adlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElID 291 (362)
T KOG4251|consen 212 ADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELID 291 (362)
T ss_pred hhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhh
Confidence 4557888999998865333445567888899999999999999999998541 1 1 12344446789
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHH
Q psy1083 85 KDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHC 135 (173)
Q Consensus 85 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~ 135 (173)
.+++|.++.+|+..+.-.++....-.++..++...+.+++.+++.++.+..
T Consensus 292 sNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 292 SNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred cCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 999999999999999888888888888899999999999999999998775
No 77
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.26 E-value=7.2e-06 Score=43.99 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 91 IDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 91 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
+++.|++.+|+.++..+++..+..+|..+|.+++|.+.-+||..++..+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6889999999999999999999999999999999999999999997653
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.18 E-value=1.9e-05 Score=49.57 Aligned_cols=62 Identities=21% Similarity=0.418 Sum_probs=54.2
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVT 74 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~ 74 (173)
+.++|..++. ++|.|+-++.+.++.. .+++.+.+..++...|.+++|.++++||+-.+..+.
T Consensus 12 y~~~F~~l~~-~~g~isg~~a~~~f~~---S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 12 YDQIFQSLDP-QDGKISGDQAREFFMK---SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHCTSS-STTEEEHHHHHHHHHH---TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCCeEeHHHHHHHHHH---cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 8889999874 6899999999999886 578899999999999999999999999998776553
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.18 E-value=3.5e-06 Score=40.88 Aligned_cols=27 Identities=37% Similarity=0.605 Sum_probs=24.2
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHh
Q psy1083 8 FLRDIFQRVDRDKSGLISTNELQMALS 34 (173)
Q Consensus 8 ~~~~~F~~~D~~~~g~i~~~e~~~~l~ 34 (173)
+++++|+.+|.+++|.|+.+||+.+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999999988
No 80
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.16 E-value=1e-05 Score=43.44 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=40.1
Q ss_pred ceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q psy1083 23 LISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV 73 (173)
Q Consensus 23 ~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 73 (173)
.++.+|++.+++. .+..+++..+..+|+.+|.+++|.+.-+||..++..+
T Consensus 1 kmsf~Evk~lLk~-~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKM-MNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHH-TT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 3789999999998 6788899999999999999999999999999887654
No 81
>KOG0377|consensus
Probab=98.14 E-value=6.9e-05 Score=57.66 Aligned_cols=125 Identities=16% Similarity=0.284 Sum_probs=88.4
Q ss_pred HHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHhh-----hCCCCCCcccHHHHHHHHHHc------CCC------
Q psy1083 44 ETVRLMIGMFDKNNTGQISFEDFGALWKYVTDWQSCFKS-----FDKDNSGNIDKLELKTALGTF------GYR------ 106 (173)
Q Consensus 44 ~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~f~~-----~D~~~~g~i~~~e~~~~l~~~------~~~------ 106 (173)
..+..-|+++|...+|+++...|+..+..+..+.--|+. ...+.+|.+....-.+.+..- +..
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 456777999999999999999999988776542222222 223455666555444433221 111
Q ss_pred CCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH----------HHHHHHhhccCCCCCCceeeeHHHHHHhhhc
Q psy1083 107 LGDNTVDILMKKFDHHGKGTILFDDFIHCCVML----------NLLTTSFSQHDEDKDGVVTLHYEQFLSMVFS 170 (173)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~----------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 170 (173)
-..+.++.+|+..|.|++|.|+.+||...+... .++.+..+..|-++||.|. ..||++....
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~ID--lNEfLeAFrl 615 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKID--LNEFLEAFRL 615 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCccc--HHHHHHHHhh
Confidence 123457789999999999999999999987642 5688899999999999966 8899887543
No 82
>KOG0041|consensus
Probab=98.13 E-value=3.2e-05 Score=53.33 Aligned_cols=64 Identities=23% Similarity=0.432 Sum_probs=54.6
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV 73 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 73 (173)
+..+|..||.+.+|.|+.-|++.++.. ++.|.+---+..++...|.+.+|+|+|.+|.-+++..
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEK-LgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEK-LGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHH-hCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 667899999999999999999999988 5666666677888888999999999999999888754
No 83
>KOG0040|consensus
Probab=98.10 E-value=1.9e-05 Score=68.33 Aligned_cols=85 Identities=22% Similarity=0.471 Sum_probs=73.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCC--CH-----HHHHHHHHhhCCCCCcceeHHHHHHHHHHH------
Q psy1083 73 VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRL--GD-----NTVDILMKKFDHHGKGTILFDDFIHCCVML------ 139 (173)
Q Consensus 73 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~-----~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~------ 139 (173)
+.++..+|+.||.+.+|.++..+|+..|+.+|..+ .+ .+.+.++...|++.+|.|+..+|++||...
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~ 2331 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENIL 2331 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccccc
Confidence 34678899999999999999999999999998765 23 378999999999999999999999999753
Q ss_pred --HHHHHHhhccCCCCCCcee
Q psy1083 140 --NLLTTSFSQHDEDKDGVVT 158 (173)
Q Consensus 140 --~~~~~~f~~~d~~~~g~i~ 158 (173)
..|..+|+-.|. +..+++
T Consensus 2332 s~~eIE~AfraL~a-~~~yvt 2351 (2399)
T KOG0040|consen 2332 SSEEIEDAFRALDA-GKPYVT 2351 (2399)
T ss_pred chHHHHHHHHHhhc-CCcccc
Confidence 578899998887 666765
No 84
>KOG0169|consensus
Probab=98.06 E-value=6.8e-05 Score=61.12 Aligned_cols=128 Identities=17% Similarity=0.260 Sum_probs=107.1
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH---HHHHHHHhhhCC
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV---TDWQSCFKSFDK 85 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~---~~~~~~f~~~D~ 85 (173)
+..+|+..|.+++|.++..+...++.. ....+....+..+|+..+..+++++...+|..+...+ .++...|..+-
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~-~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s- 215 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQ-LNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYS- 215 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHH-HHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHHh-
Confidence 778899999999999999999999998 6677888899999999988899999999999987654 36777787775
Q ss_pred CCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhhCCC----CCcceeHHHHHHHHHH
Q psy1083 86 DNSGNIDKLELKTALGTFG--YRLGDNTVDILMKKFDHH----GKGTILFDDFIHCCVM 138 (173)
Q Consensus 86 ~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~~~~----~~~~i~~~ef~~~l~~ 138 (173)
.+.++++.+++..++...+ ...+....+++++.+... ..+.+++++|.+||.+
T Consensus 216 ~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 216 HGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred CCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 3489999999999999863 246778888888887543 3457999999999965
No 85
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.05 E-value=0.0001 Score=46.25 Aligned_cols=65 Identities=18% Similarity=0.338 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHH
Q psy1083 73 VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLN 140 (173)
Q Consensus 73 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~~ 140 (173)
...+..+|...|. ++|.|+.++...++...+ ++.+.+..+....|.+++|.++++||+-.+....
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 4567889999884 689999999999998877 8889999999999999999999999999887654
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.01 E-value=1.2e-05 Score=36.89 Aligned_cols=25 Identities=44% Similarity=0.628 Sum_probs=19.4
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMAL 33 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l 33 (173)
++++|+.+|.+++|.|+.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4677888888888888888887753
No 87
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.99 E-value=3.3e-05 Score=59.63 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=70.3
Q ss_pred ceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHH-HHH-------HHHHHHHHHhhhCCCCCCcccHH
Q psy1083 23 LISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA-LWK-------YVTDWQSCFKSFDKDNSGNIDKL 94 (173)
Q Consensus 23 ~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~-~~~-------~~~~~~~~f~~~D~~~~g~i~~~ 94 (173)
.++..+|+-.+.. .+...+.+..=++.|..+. ..++.++. .+. ....++.+|+.+|.+++|.|+.+
T Consensus 281 ~~~e~~f~~~~~~---~~ma~ekl~egi~~F~~d~---~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~ 354 (391)
T PRK12309 281 HMDRATFDKMHAE---DRMASEKLDEGIKGFSKAL---ETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITRE 354 (391)
T ss_pred CCCHHHHHHHhcc---CchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHH
Confidence 4688888877653 3444455555555553332 45555554 222 12467899999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 95 ELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 95 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
||.. ++.+|..+|.|++|.|+++||...+...
T Consensus 355 E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 355 EWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 9942 4778999999999999999999988754
No 88
>KOG4666|consensus
Probab=97.99 E-value=1.9e-05 Score=58.28 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCCCCCCCccHHHHHHHHHHH-------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q psy1083 44 ETVRLMIGMFDKNNTGQISFEDFGALWKYV-------TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILM 116 (173)
Q Consensus 44 ~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 116 (173)
..+..+|..||.+++|.++|.+....++.+ .-+..+|++|+.+-+|.+...+|.-+|+.. ..+..-.+--++
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh-cCcceeeccccc
Confidence 567788999999999999999988766543 457889999999999999999999988873 223333455677
Q ss_pred HhhCCCCCcceeHHHHHHHHHHHHHHHHHhhcc
Q psy1083 117 KKFDHHGKGTILFDDFIHCCVMLNLLTTSFSQH 149 (173)
Q Consensus 117 ~~~~~~~~~~i~~~ef~~~l~~~~~~~~~f~~~ 149 (173)
...+...+++|++.+|.+++...+++...|..+
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~~p~~a~~~~~y 370 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAATEPNLALSELGY 370 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHhCchhhhhhhcc
Confidence 888777799999999999999888777666544
No 89
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.98 E-value=1.2e-05 Score=36.93 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=15.2
Q ss_pred HHHHhhhCCCCCCcccHHHHHHH
Q psy1083 77 QSCFKSFDKDNSGNIDKLELKTA 99 (173)
Q Consensus 77 ~~~f~~~D~~~~g~i~~~e~~~~ 99 (173)
+.+|..+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45666677777777777776654
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.87 E-value=4.8e-05 Score=58.73 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=65.4
Q ss_pred ccHHHHHHHHH----HHHHHHHHHhhhCCCCCCcccHHH-HHHHHHH-cCCCCCHHHHHHHHHhhCCCCCcceeHHHHHH
Q psy1083 61 ISFEDFGALWK----YVTDWQSCFKSFDKDNSGNIDKLE-LKTALGT-FGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134 (173)
Q Consensus 61 v~~~ef~~~~~----~~~~~~~~f~~~D~~~~g~i~~~e-~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~ 134 (173)
++-.+|...+. ..+++.+-.+.|-.+.. ..+. ++..+.. .|.......+..+|+.+|.+++|.|+.+||..
T Consensus 282 ~~e~~f~~~~~~~~ma~ekl~egi~~F~~d~~---~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~ 358 (391)
T PRK12309 282 MDRATFDKMHAEDRMASEKLDEGIKGFSKALE---TLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG 358 (391)
T ss_pred CCHHHHHHHhccCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 56666765553 22444444444432222 2222 2333332 35567778899999999999999999999964
Q ss_pred HHHHHHHHHHHhhccCCCCCCceeeeHHHHHHhhh
Q psy1083 135 CCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMVF 169 (173)
Q Consensus 135 ~l~~~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 169 (173)
...+|..+|.+++|.|+ +++|...+.
T Consensus 359 -------~~~~F~~~D~d~DG~Is--~eEf~~~~~ 384 (391)
T PRK12309 359 -------SDAVFDALDLNHDGKIT--PEEMRAGLG 384 (391)
T ss_pred -------HHHHHHHhCCCCCCCCc--HHHHHHHHH
Confidence 35689999999999976 899987654
No 91
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.85 E-value=9.7e-06 Score=51.78 Aligned_cols=60 Identities=20% Similarity=0.362 Sum_probs=44.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHH
Q psy1083 74 TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHC 135 (173)
Q Consensus 74 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~ 135 (173)
..+.-.|..+|.|++|.|+..|++.+...+ ...+..+..++..+|.|++|.|+..||..+
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 457788999999999999999998877654 355556788999999999999999998764
No 92
>KOG4666|consensus
Probab=97.70 E-value=0.00021 Score=53.02 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=85.4
Q ss_pred CChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH---H--HHHH
Q psy1083 4 PPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV---T--DWQS 78 (173)
Q Consensus 4 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~---~--~~~~ 78 (173)
+-++.+...|..||..++|.+++.|-...+.-+.+.+.++..++.-|+.|+...+|.++-.+|..++... + .+-.
T Consensus 256 pvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~ 335 (412)
T KOG4666|consen 256 PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPV 335 (412)
T ss_pred chhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccc
Confidence 4456789999999999999999999999888777788899999999999999999999998888777543 2 3456
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHH
Q psy1083 79 CFKSFDKDNSGNIDKLELKTALGT 102 (173)
Q Consensus 79 ~f~~~D~~~~g~i~~~e~~~~l~~ 102 (173)
.|...+...+|.|+.++|+.+...
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHh
Confidence 799999999999999999998865
No 93
>KOG1707|consensus
Probab=97.63 E-value=0.00057 Score=54.57 Aligned_cols=129 Identities=19% Similarity=0.277 Sum_probs=93.5
Q ss_pred hHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCC---CC--CCCccHHHHHHHHHH---------
Q psy1083 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDK---NN--TGQISFEDFGALWKY--------- 72 (173)
Q Consensus 7 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~---~~--~g~v~~~ef~~~~~~--------- 72 (173)
..+.++|...|.+++|.++-.|+..+-..+++.++...++..+-...+. ++ .+.++..-|+-+...
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~Et 274 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHET 274 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccc
Confidence 3488999999999999999999999999888888887666665554422 22 345677777765421
Q ss_pred ---------------------------------------HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCC--CHHH
Q psy1083 73 ---------------------------------------VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRL--GDNT 111 (173)
Q Consensus 73 ---------------------------------------~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~~ 111 (173)
.+.+..+|..+|.|++|.++..|+..++...+..+ ...+
T Consensus 275 tW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~ 354 (625)
T KOG1707|consen 275 TWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPY 354 (625)
T ss_pred hhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcc
Confidence 13578899999999999999999999998875433 0000
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 112 VDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 112 ~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
.+ ..-.+..|.++|..|++.+...
T Consensus 355 ~~----~t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 355 KD----STVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred cc----cceecccceeehhhHHHHHHHH
Confidence 00 1112257899999999987653
No 94
>KOG1029|consensus
Probab=97.60 E-value=0.002 Score=53.03 Aligned_cols=123 Identities=20% Similarity=0.391 Sum_probs=99.9
Q ss_pred HHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH-----------------
Q psy1083 11 DIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV----------------- 73 (173)
Q Consensus 11 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~----------------- 73 (173)
+.|..+ ....|.||-.+-+.++.. ..++...+..++..-|.|.||+++..+|.-.+..+
T Consensus 20 ~qF~~L-kp~~gfitg~qArnfflq---S~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP~~LPPsl 95 (1118)
T KOG1029|consen 20 AQFGQL-KPGQGFITGDQARNFFLQ---SGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLPPVLPPSL 95 (1118)
T ss_pred HHHhcc-CCCCCccchHhhhhhHHh---cCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCCCCCChHH
Confidence 345555 568999999999998865 56777888899999999999999999998755210
Q ss_pred --------------------------------------------------------------------------------
Q psy1083 74 -------------------------------------------------------------------------------- 73 (173)
Q Consensus 74 -------------------------------------------------------------------------------- 73 (173)
T Consensus 96 l~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ss~se~~ 175 (1118)
T KOG1029|consen 96 LKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHDSSVSEGR 175 (1118)
T ss_pred hccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCcchhhcC
Confidence
Q ss_pred -------------------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHH
Q psy1083 74 -------------------TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134 (173)
Q Consensus 74 -------------------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~ 134 (173)
-+++.+|..+|+..+|+++-..-+.+|...+ ++...+-.|....|.|+||+++-+||+=
T Consensus 176 ~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfil 253 (1118)
T KOG1029|consen 176 PSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFIL 253 (1118)
T ss_pred ccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHH
Confidence 1468899999999999999999999997665 6666777888888999999999999987
Q ss_pred HHHHH
Q psy1083 135 CCVML 139 (173)
Q Consensus 135 ~l~~~ 139 (173)
.+..+
T Consensus 254 am~li 258 (1118)
T KOG1029|consen 254 AMHLI 258 (1118)
T ss_pred HHHHH
Confidence 76543
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.59 E-value=0.00022 Score=42.93 Aligned_cols=63 Identities=21% Similarity=0.397 Sum_probs=51.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHhhCCC----CCcceeHHHHHHHHHH
Q psy1083 75 DWQSCFKSFDKDNSGNIDKLELKTALGTF-GY-RLGDNTVDILMKKFDHH----GKGTILFDDFIHCCVM 138 (173)
Q Consensus 75 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~~~~----~~~~i~~~ef~~~l~~ 138 (173)
++..+|..+-. +.+.|+.++|..+|... +. ..+...+..++..+..+ ..+.+++++|.++|.+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 36778988854 78999999999999874 44 46899999999998654 4789999999999864
No 96
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.41 E-value=9.1e-05 Score=47.33 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=35.5
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~ 68 (173)
+.=.|..+|.+++|.|+..|++.+...+ ...+.=+..+++.+|.+++|.||+.|+..
T Consensus 56 ~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 56 VHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4445788888888888888888876542 22344466777888888888888888764
No 97
>KOG0046|consensus
Probab=97.35 E-value=0.0011 Score=52.19 Aligned_cols=65 Identities=15% Similarity=0.341 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH
Q psy1083 73 VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYR---LGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 73 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~ 138 (173)
+..+...|...| +++|+|+..++..++...+.. ...+++++++...+.+.+|+|+|++|+..+..
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 556788999999 999999999999999987643 46889999999999999999999999996554
No 98
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.26 E-value=0.00074 Score=40.58 Aligned_cols=63 Identities=17% Similarity=0.366 Sum_probs=47.4
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCCC----CCCCccHHHHHHHHH
Q psy1083 8 FLRDIFQRVDRDKSGLISTNELQMALSNGTW-KPFNAETVRLMIGMFDKN----NTGQISFEDFGALWK 71 (173)
Q Consensus 8 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~l~~~~d~~----~~g~v~~~ef~~~~~ 71 (173)
+++.+|..+. .+.+.||.++|.++|...=+ ...+.+.+..++.++.++ ..+.+|++.|..++.
T Consensus 1 ei~~if~~ys-~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYS-SDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHC-TTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHh-CCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 5789999994 48999999999999975222 245788888888887443 356777777777653
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.11 E-value=0.00086 Score=30.76 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=20.0
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhc
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSN 35 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~ 35 (173)
++++|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 566777777777778888887777654
No 100
>KOG4065|consensus
Probab=96.92 E-value=0.0039 Score=39.35 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=43.9
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHc------CC-C---CCHHHHHHHHH----hhCCCCCcceeHHHHHHH
Q psy1083 77 QSCFKSFDKDNSGNIDKLELKTALGTF------GY-R---LGDNTVDILMK----KFDHHGKGTILFDDFIHC 135 (173)
Q Consensus 77 ~~~f~~~D~~~~g~i~~~e~~~~l~~~------~~-~---~~~~~~~~~~~----~~~~~~~~~i~~~ef~~~ 135 (173)
-..|.+.|.|++|.|+--|+..++... |. + +++.++..++. .-|.+++|.|+|-||+..
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 456889999999999999999888764 21 1 35556555444 457778999999999764
No 101
>KOG0046|consensus
Probab=96.88 E-value=0.0058 Score=48.33 Aligned_cols=64 Identities=23% Similarity=0.523 Sum_probs=54.1
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCC--CCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTW--KPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV 73 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 73 (173)
++..|...| +++|.++..++..++..... .....++++.+....+.+.+|+|+|++|+..+-.+
T Consensus 21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 21 LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 778899998 99999999999999986321 23458899999999999999999999999966543
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.88 E-value=0.0017 Score=29.70 Aligned_cols=25 Identities=44% Similarity=0.678 Sum_probs=13.0
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHH
Q psy1083 77 QSCFKSFDKDNSGNIDKLELKTALG 101 (173)
Q Consensus 77 ~~~f~~~D~~~~g~i~~~e~~~~l~ 101 (173)
..+|..+|.+++|.|+..+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3445555555555555555555443
No 103
>PLN02952 phosphoinositide phospholipase C
Probab=96.82 E-value=0.007 Score=49.32 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=55.6
Q ss_pred CCCCccHHHHHHHHHHH--------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-C-CCCHHHHHHHHHhh----C--
Q psy1083 57 NTGQISFEDFGALWKYV--------TDWQSCFKSFDKDNSGNIDKLELKTALGTFG-Y-RLGDNTVDILMKKF----D-- 120 (173)
Q Consensus 57 ~~g~v~~~ef~~~~~~~--------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~-~~~~~~~~~~~~~~----~-- 120 (173)
+.|.++|++|..+...+ .++..+|..+-. +.+.|+.++|..+|.... . ..+.+.+..++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 34788888888776654 478888888853 446899999999988853 2 25556666665433 1
Q ss_pred -CCCCcceeHHHHHHHHHH
Q psy1083 121 -HHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 121 -~~~~~~i~~~ef~~~l~~ 138 (173)
..+.+.+++++|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 112346899999999874
No 104
>KOG1029|consensus
Probab=96.00 E-value=0.017 Score=47.92 Aligned_cols=66 Identities=18% Similarity=0.330 Sum_probs=58.2
Q ss_pred ChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q psy1083 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV 73 (173)
Q Consensus 5 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 73 (173)
++-.+++.|+.+|+..+|.++-.+-+.+|.. ..++...+..++..-|.|+||+++-++|+-.+..+
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~q---S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQ---SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHh---cCCchhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 4455999999999999999999999999876 56788899999999999999999999999866544
No 105
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.98 E-value=0.056 Score=36.52 Aligned_cols=85 Identities=18% Similarity=0.280 Sum_probs=58.1
Q ss_pred HHHHHHhhC---CCCCcceeHHHHHHHHhcC--CCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHhhh
Q psy1083 9 LRDIFQRVD---RDKSGLISTNELQMALSNG--TWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVTDWQSCFKSF 83 (173)
Q Consensus 9 ~~~~F~~~D---~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~f~~~ 83 (173)
|+++|..|- ..+...++-..|.++++.. ....++...+..+|.++...+...|+|++|+..+..+.....
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~----- 75 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKG----- 75 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHS-----
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhh-----
Confidence 467787773 3567789999999999973 344588999999999987766678999999988876543321
Q ss_pred CCCCCCcccHHHHHHHHHH
Q psy1083 84 DKDNSGNIDKLELKTALGT 102 (173)
Q Consensus 84 D~~~~g~i~~~e~~~~l~~ 102 (173)
.+.+ +.+++...+..
T Consensus 76 -~~~~---~~~~~~~kl~~ 90 (154)
T PF05517_consen 76 -KDKS---SAEELKEKLTA 90 (154)
T ss_dssp -CCCT---HHHHHHHHHHT
T ss_pred -cccc---cHHHHHHHHHc
Confidence 1111 66666666643
No 106
>KOG1707|consensus
Probab=95.65 E-value=0.16 Score=41.26 Aligned_cols=97 Identities=19% Similarity=0.307 Sum_probs=69.7
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhC---CC--CCcceeHHHHHHHHHH---------
Q psy1083 74 TDWQSCFKSFDKDNSGNIDKLELKTALGT-FGYRLGDNTVDILMKKFD---HH--GKGTILFDDFIHCCVM--------- 138 (173)
Q Consensus 74 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~---~~--~~~~i~~~ef~~~l~~--------- 138 (173)
..+..+|++.|.|.+|.++-.|+..+-+. ++.++++.+++.+..... .+ -+..++..+|+-+-..
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~Et 274 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHET 274 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccc
Confidence 46889999999999999999999988776 566777766665444332 22 1446777777665421
Q ss_pred ---------------------------------------HHHHHHHhhccCCCCCCceeeeHHHHHHhhhccc
Q psy1083 139 ---------------------------------------LNLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSLK 172 (173)
Q Consensus 139 ---------------------------------------~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~~ 172 (173)
.+.+...|..||.++||-++ ..|+-......|
T Consensus 275 tW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~--p~El~~LF~~~P 345 (625)
T KOG1707|consen 275 TWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALS--PEELKDLFSTAP 345 (625)
T ss_pred hhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcC--HHHHHHHhhhCC
Confidence 13477889999999999965 777766655554
No 107
>KOG4065|consensus
Probab=95.56 E-value=0.062 Score=34.07 Aligned_cols=64 Identities=25% Similarity=0.354 Sum_probs=40.2
Q ss_pred ChhHH-HHHHHhhCCCCCcceeHHHHHHHHhcCC------C--CCC-CHHH----HHHHHHhcCCCCCCCccHHHHHH
Q psy1083 5 PPEFL-RDIFQRVDRDKSGLISTNELQMALSNGT------W--KPF-NAET----VRLMIGMFDKNNTGQISFEDFGA 68 (173)
Q Consensus 5 ~~~~~-~~~F~~~D~~~~g~i~~~e~~~~l~~~~------~--~~~-~~~~----~~~l~~~~d~~~~g~v~~~ef~~ 68 (173)
+++++ -..|...|-++++.|+--|+.+++.... . .|+ ++.+ +..+++.-|.+++|.|+|-+|+.
T Consensus 64 tpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 64 TPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred CHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 34443 3467888999999999999999886421 1 122 3333 33444445667777777777764
No 108
>KOG0169|consensus
Probab=95.53 E-value=0.065 Score=44.45 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=69.0
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH---HHHHHHHhhccCCC
Q psy1083 76 WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM---LNLLTTSFSQHDED 152 (173)
Q Consensus 76 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~---~~~~~~~f~~~d~~ 152 (173)
+..+|...|++.+|.++..+..+++..+...+....+..+++..+..+++++...+|.++... .+++...|..+..+
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s~~ 217 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYSHG 217 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHHhCC
Confidence 567889999999999999999999998888888888888888888778889988888887654 35677777776544
Q ss_pred CCCceeeeHHHHHHh
Q psy1083 153 KDGVVTLHYEQFLSM 167 (173)
Q Consensus 153 ~~g~i~~~~~~~~~~ 167 (173)
.+.++ .++.++.
T Consensus 218 -~~~ls--~~~L~~F 229 (746)
T KOG0169|consen 218 -KEYLS--TDDLLRF 229 (746)
T ss_pred -CCccC--HHHHHHH
Confidence 55544 5555443
No 109
>KOG4347|consensus
Probab=95.51 E-value=0.031 Score=45.41 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=57.9
Q ss_pred eeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH------HHHHHHHhhhCCCCCCcccHHHH
Q psy1083 24 ISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV------TDWQSCFKSFDKDNSGNIDKLEL 96 (173)
Q Consensus 24 i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~------~~~~~~f~~~D~~~~g~i~~~e~ 96 (173)
+.+..|..+++.+..-+.+...+.++|+..|.+.+|.++|.++++.+..+ +++.-+|+.+|.+++ ..+.++.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 55666666666544444567788999999999999999999999987654 578889999999998 8888887
No 110
>KOG0035|consensus
Probab=95.41 E-value=0.2 Score=42.62 Aligned_cols=90 Identities=17% Similarity=0.095 Sum_probs=68.7
Q ss_pred hHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCC-----HHHHHHHHHhcCCCCCCCccHHHHHHHHHHH-------H
Q psy1083 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFN-----AETVRLMIGMFDKNNTGQISFEDFGALWKYV-------T 74 (173)
Q Consensus 7 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-------~ 74 (173)
++++..|+.+++...|.++.+++..++.+ ++.... .+++..+..+-|....|.|++.+|...+... .
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lms-lg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMS-LGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHh-cCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 45888999999999999999999999998 444433 2455555556677777999999999988753 3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHH
Q psy1083 75 DWQSCFKSFDKDNSGNIDKLELKT 98 (173)
Q Consensus 75 ~~~~~f~~~D~~~~g~i~~~e~~~ 98 (173)
.+...|+.+-++.. +|..+|+..
T Consensus 826 r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 826 RAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHcchh-HHHHHHHHh
Confidence 56777888866554 777787776
No 111
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.97 E-value=0.33 Score=33.24 Aligned_cols=125 Identities=15% Similarity=0.034 Sum_probs=72.1
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCC---CCCCccHHHHHHHHH--------------
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKN---NTGQISFEDFGALWK-------------- 71 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~---~~g~v~~~ef~~~~~-------------- 71 (173)
+++=-..+|.|++|.|.+.|-...++. ++.++.-..+..++-....+ ..+.+.-.-|--.+.
T Consensus 9 LQqHvaFFDrd~DGiI~P~dTy~GFra-LGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 9 LQQHVAFFDRDKDGIIYPWDTYQGFRA-LGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HhhhhceeCCCCCeeECHHHHHHHHHH-hCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 555455679999999999999999988 44443333322222211000 001110000100000
Q ss_pred ------HHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCC-------CHHHHHHHHHhhCCCCCcceeHHHHHHH
Q psy1083 72 ------YVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRL-------GDNTVDILMKKFDHHGKGTILFDDFIHC 135 (173)
Q Consensus 72 ------~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~ef~~~ 135 (173)
..++++.+|..++..+.+.+|..|+..+++...... +.-|...+.... .+.+|.+..+.....
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 125789999999988889999999999998843322 223333333333 456888888765443
No 112
>KOG2243|consensus
Probab=94.95 E-value=0.049 Score=48.27 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=51.4
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHH
Q psy1083 78 SCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCV 137 (173)
Q Consensus 78 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~ 137 (173)
..|+.+|+||.|.|+..+|++++.. ..+.+.++++.++.-...+.+...+|++|+.-..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 3588899999999999999999976 4567889999999988888889999999998763
No 113
>KOG3555|consensus
Probab=94.89 E-value=0.083 Score=39.93 Aligned_cols=95 Identities=22% Similarity=0.209 Sum_probs=59.3
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCC---CCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH--HHHHHHHHHhhh
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWK---PFNAETVRLMIGMFDKNNTGQISFEDFGALWK--YVTDWQSCFKSF 83 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~--~~~~~~~~f~~~ 83 (173)
|+.+|..+-.+.++......+...-.. +.. +.=...+.=+|.++|.+.++.++..|...+.. ...-++..|...
T Consensus 213 L~dWF~~lhe~s~~~~~~ss~~~~~~~-~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfnsC 291 (434)
T KOG3555|consen 213 LRDWFKALHEDSSQNDKTSSLHSAASG-FDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNSC 291 (434)
T ss_pred HHHHHHHHHhhhhccCcchhhcccccc-cccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhhh
Confidence 667777765556665555555554333 111 22245667777777777777777777666543 233466777777
Q ss_pred CCCCCCcccHHHHHHHHHHcC
Q psy1083 84 DKDNSGNIDKLELKTALGTFG 104 (173)
Q Consensus 84 D~~~~g~i~~~e~~~~l~~~~ 104 (173)
|...+|.|+..|+..-+...+
T Consensus 292 D~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 292 DTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred cccccCccccchhhhhhccCC
Confidence 777777777777776665543
No 114
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.79 E-value=0.39 Score=32.45 Aligned_cols=61 Identities=28% Similarity=0.492 Sum_probs=46.7
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 79 CFKSFDKDNSGNIDKLELKTALGTFGY---RLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 79 ~f~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
.|..+-..+...++...|..+|+..++ .++...++-+|..+...+...|+|++|..+|..+
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 344444567778999999999999643 5889999999999877667789999999998654
No 115
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.39 E-value=0.49 Score=28.85 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHc-------CCC----CCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHH
Q psy1083 73 VTDWQSCFKSFDKDNSGNIDKLELKTALGTF-------GYR----LGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLN 140 (173)
Q Consensus 73 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~~----~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~~ 140 (173)
.++++.+|..+ .|++|.++...|..+|..+ |.. ..+.-++..|.... ....|+.+.|+..+...+
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCC
Confidence 36788999988 5889999999998888763 322 35566777777763 467899999999987543
No 116
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.16 E-value=0.064 Score=30.95 Aligned_cols=54 Identities=9% Similarity=0.233 Sum_probs=36.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC-------CCcceeHHHHHHH
Q psy1083 74 TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHH-------GKGTILFDDFIHC 135 (173)
Q Consensus 74 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~ef~~~ 135 (173)
+++..+|+.+ .+++++||.++|++.|..-. .+.+..++... ..|.++|..|++.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe~-------aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTPEQ-------AEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-CCC-------HHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCcHH-------HHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 5678999999 78899999999999874321 23344433221 2478999988753
No 117
>KOG4578|consensus
Probab=93.56 E-value=0.067 Score=40.15 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=45.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 76 WQSCFKSFDKDNSGNIDKLELKTALGTFGY-RLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 76 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
+...|..+|+|.++.|...|++.+=.-+.. .-...-.+.+++.+|.++|.+|++.|+..+|...
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 445688888888888888887665444322 2233445678888888888888888888887643
No 118
>KOG1955|consensus
Probab=93.39 E-value=0.32 Score=38.72 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH
Q psy1083 73 VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 73 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~ 138 (173)
.+.+...|+-+..|..|+|+-.--+.++.+.. +.-.++..|....|.+.||-+++.||+..+..
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 34567789999999999999999999998765 66778999999999999999999999998753
No 119
>KOG1265|consensus
Probab=93.34 E-value=3.2 Score=35.84 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=83.6
Q ss_pred CCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhc--CCCCCC-----CccHHHHHHHHHHH---HHHHHHHhhhCCCC
Q psy1083 18 RDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMF--DKNNTG-----QISFEDFGALWKYV---TDWQSCFKSFDKDN 87 (173)
Q Consensus 18 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~--d~~~~g-----~v~~~ef~~~~~~~---~~~~~~f~~~D~~~ 87 (173)
.+..|.|..+.+.+++.. . . ++..+...+..+ ..+.+. ..+++.|..++..+ .+++.+|..+..++
T Consensus 159 vn~~grip~knI~k~F~~-~-k--~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~~ 234 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSA-D-K--KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGKK 234 (1189)
T ss_pred ccccccccHHHHHHHhhc-C-C--chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccCC
Confidence 467888988888888765 1 1 123333333332 222222 35677777777765 57999999999888
Q ss_pred CCcccHHHHHHHHHHcCC----------CCCHHHHHHHHHhhCCC----CCcceeHHHHHHHHHH
Q psy1083 88 SGNIDKLELKTALGTFGY----------RLGDNTVDILMKKFDHH----GKGTILFDDFIHCCVM 138 (173)
Q Consensus 88 ~g~i~~~e~~~~l~~~~~----------~~~~~~~~~~~~~~~~~----~~~~i~~~ef~~~l~~ 138 (173)
.-++|.++|..++..-.- ...+..+..++..+..+ ..|+|+-+.|+.++..
T Consensus 235 kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 235 KPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 899999999999987311 24678899999998776 4789999999999864
No 120
>KOG3555|consensus
Probab=93.31 E-value=0.17 Score=38.30 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=51.6
Q ss_pred hhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q psy1083 6 PEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWK 71 (173)
Q Consensus 6 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 71 (173)
.+++-=+|..+|.+.++.|+..|++.+... -.+.=+..+|..+|+..+|+|+-.||+.-+.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD-----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc-----CchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 345667899999999999999999997654 2456688999999999999999999998664
No 121
>KOG1955|consensus
Probab=93.28 E-value=0.28 Score=39.05 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=49.6
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKY 72 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 72 (173)
+-..|+.+..|.+|.|+-+--+.++.. ..++-.++..+|...|.+.+|-+++.|||..+..
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtK---Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTK---SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhh---ccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 556678888888999998888888765 4567788889999999999999999999987653
No 122
>KOG0042|consensus
Probab=93.04 E-value=0.38 Score=39.05 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=59.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHH
Q psy1083 75 DWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLN 140 (173)
Q Consensus 75 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~~ 140 (173)
..+.-|..+|.++.|+++..+..++|+..+...+++.+++++...+.+-+|.+...||...+..++
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 456789999999999999999999999988889999999999999988899999999999987653
No 123
>KOG2243|consensus
Probab=92.82 E-value=0.25 Score=44.18 Aligned_cols=57 Identities=19% Similarity=0.472 Sum_probs=50.6
Q ss_pred HHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHH
Q psy1083 12 IFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALW 70 (173)
Q Consensus 12 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 70 (173)
.|+.||+|+.|.|+.++|.+++.. ....++.++.-++.....+.+...+|++|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~--~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG--HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc--cccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 477899999999999999999875 567889999999999888889999999999865
No 124
>KOG4578|consensus
Probab=92.40 E-value=0.08 Score=39.76 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCCCCCccHHHHHHHHHHH-------HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q psy1083 45 TVRLMIGMFDKNNTGQISFEDFGALWKYV-------TDWQSCFKSFDKDNSGNIDKLELKTALGT 102 (173)
Q Consensus 45 ~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 102 (173)
.+.--|..+|.+.++.+.-.|+..+-..+ .-.+.+|+..|.|++..|+..|+..-|..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34444556666666666655544332222 12456667777777777777777766644
No 125
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.44 E-value=1.5 Score=26.80 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=36.0
Q ss_pred hhHHHHHHHhhCCCCCcceeHHHHHHHHhcCC------CC----CCCHHHHHHHHHhcCCCCCCCccHHHHHHHH
Q psy1083 6 PEFLRDIFQRVDRDKSGLISTNELQMALSNGT------WK----PFNAETVRLMIGMFDKNNTGQISFEDFGALW 70 (173)
Q Consensus 6 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~------~~----~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 70 (173)
.+.++-+|+.+ .|++|.++...+..++..+. ++ ...+..++..|... ..+..|+.++|+.-+
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl 73 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWL 73 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHH
Confidence 36789999999 78999999999999987521 11 11455556666554 233456666666543
No 126
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=91.04 E-value=0.47 Score=27.40 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=38.8
Q ss_pred CChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCC-------CCCCccHHHHHH
Q psy1083 4 PPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKN-------NTGQISFEDFGA 68 (173)
Q Consensus 4 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~-------~~g~v~~~ef~~ 68 (173)
.|.+++.+.|+.+ .++.+.||..+++..+.. +.+..+...+..- ..|.++|..|+.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p--------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP--------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C--------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcCc--------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 5788999999999 778899999999998643 1124555544221 126678888764
No 127
>KOG0998|consensus
Probab=89.15 E-value=0.67 Score=39.95 Aligned_cols=59 Identities=17% Similarity=0.360 Sum_probs=46.2
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWK 71 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 71 (173)
+.++|+.+. .++|.++-...+.++.. ..++...+.+++...|.+.+|.++..+|...+.
T Consensus 131 y~q~f~s~~-p~~g~~sg~~~~pil~~---s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 131 YDQIFRSLS-PSNGLLSGDKAKPILLN---SKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMH 189 (847)
T ss_pred HHHHHhccC-CCCCccccchhhhhhhc---CCCChhhhccccccccccccCCCChhhhhhhhh
Confidence 677788774 56888888888888765 566677777888888888899999999887554
No 128
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=88.93 E-value=4.4 Score=27.88 Aligned_cols=59 Identities=14% Similarity=0.339 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH-------------HHHHHHHHhhhCCCCCCcccHHHHHHHH
Q psy1083 41 FNAETVRLMIGMFDKNNTGQISFEDFGALWKY-------------VTDWQSCFKSFDKDNSGNIDKLELKTAL 100 (173)
Q Consensus 41 ~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~-------------~~~~~~~f~~~D~~~~g~i~~~e~~~~l 100 (173)
+-++.++.+|.+++..+.+.+|+.|...++.. .-++..+|.+. ++.+|.+..++++.+.
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 45667777777777666677777777766542 12455555554 5678889888887654
No 129
>KOG0998|consensus
Probab=88.53 E-value=1.5 Score=37.85 Aligned_cols=128 Identities=18% Similarity=0.263 Sum_probs=94.8
Q ss_pred hHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH-------------
Q psy1083 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV------------- 73 (173)
Q Consensus 7 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~------------- 73 (173)
..+...|+.+|....|.|+..+...++.. ..+....+-.++...|..+.|.++...|..-++.+
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~---s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~ 87 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSK---SGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKK 87 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhc---cccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCccc
Confidence 45888999999999999999999998865 56677788888888999999999999998866432
Q ss_pred -----------------------------------------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHH
Q psy1083 74 -----------------------------------------TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTV 112 (173)
Q Consensus 74 -----------------------------------------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~ 112 (173)
.++..+|....+. .|.++-...+.++..-+ +....+
T Consensus 88 ~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~l 164 (847)
T KOG0998|consen 88 VLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDVL 164 (847)
T ss_pred cccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhhh
Confidence 1344556665533 67777777776664433 444455
Q ss_pred HHHHHhhCCCCCcceeHHHHHHHHHHHH
Q psy1083 113 DILMKKFDHHGKGTILFDDFIHCCVMLN 140 (173)
Q Consensus 113 ~~~~~~~~~~~~~~i~~~ef~~~l~~~~ 140 (173)
-.+....+.+.+|.++..+|.-.+....
T Consensus 165 ~~iw~l~d~d~~g~Ld~~ef~~am~l~~ 192 (847)
T KOG0998|consen 165 GRIWELSDIDKDGNLDRDEFAVAMHLIN 192 (847)
T ss_pred ccccccccccccCCCChhhhhhhhhHHH
Confidence 5666777888888888888888776443
No 130
>KOG4347|consensus
Probab=88.09 E-value=0.99 Score=37.18 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=36.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHH
Q psy1083 75 DWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDF 132 (173)
Q Consensus 75 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef 132 (173)
.++.+|+.+|.+++|.|++.++..-|..+...-.-+.+.-++..++..++ ..+.++-
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 35677777777777777777777777665444444555666666666655 5555443
No 131
>KOG0042|consensus
Probab=87.93 E-value=1.2 Score=36.40 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=55.2
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV 73 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 73 (173)
++..|..+|.++.|.++..+..+.+++ .+...+++.+..+.+..+..-+|.+...+|..++..+
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~-~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKS-ENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 556788999999999999999999998 4568899999999999988888999999988877654
No 132
>PLN02230 phosphoinositide phospholipase C 4
Probab=87.69 E-value=1.3 Score=36.49 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=39.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-C--CCCHHHHHHHHHhhCC-------CCCcceeHHHHHHHHHH
Q psy1083 74 TDWQSCFKSFDKDNSGNIDKLELKTALGTFG-Y--RLGDNTVDILMKKFDH-------HGKGTILFDDFIHCCVM 138 (173)
Q Consensus 74 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~--~~~~~~~~~~~~~~~~-------~~~~~i~~~ef~~~l~~ 138 (173)
.++..+|..+. .+++.++.++|..+|.... . ..+.+.++.++..+.. -+.+.++.++|..||.+
T Consensus 29 ~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 45666676664 2336777777777777643 2 2344555555543311 12456999999999875
No 133
>KOG1264|consensus
Probab=87.40 E-value=2.7 Score=35.98 Aligned_cols=135 Identities=19% Similarity=0.260 Sum_probs=77.3
Q ss_pred CChhHHHH----HHHhhCCCCCcceeHHHHHHHHhcCCCCCCCH-HHHHHHHHhcCCCCCCCccHHHHHHHHHHHH----
Q psy1083 4 PPPEFLRD----IFQRVDRDKSGLISTNELQMALSNGTWKPFNA-ETVRLMIGMFDKNNTGQISFEDFGALWKYVT---- 74 (173)
Q Consensus 4 ~~~~~~~~----~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~---- 74 (173)
+.+.++.. .+..+|......|+..+++.++... ....+. .....-|.. |...++.++|.+|..++..+=
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qv-n~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~ 214 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQV-NFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQ 214 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccc-eEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccc
Confidence 34445444 3444555455679999999998773 333332 222222322 223467899999999876531
Q ss_pred -----HHHHH--HhhhCCCCCCcccHHHHHHHHHHcCCCC---CHHHHHHHHHhhCC-----CCCcceeHHHHHHHHHHH
Q psy1083 75 -----DWQSC--FKSFDKDNSGNIDKLELKTALGTFGYRL---GDNTVDILMKKFDH-----HGKGTILFDDFIHCCVML 139 (173)
Q Consensus 75 -----~~~~~--f~~~D~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~~~-----~~~~~i~~~ef~~~l~~~ 139 (173)
..... ...-+...--.++..+|.++|..-.... ....++++++.|-. .....+...||+.+|-+.
T Consensus 215 ~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSr 294 (1267)
T KOG1264|consen 215 KAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSR 294 (1267)
T ss_pred hhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhc
Confidence 11111 1222333345799999999997643222 22234455554422 245578999999999765
Q ss_pred H
Q psy1083 140 N 140 (173)
Q Consensus 140 ~ 140 (173)
+
T Consensus 295 e 295 (1267)
T KOG1264|consen 295 E 295 (1267)
T ss_pred c
Confidence 4
No 134
>PLN02952 phosphoinositide phospholipase C
Probab=87.01 E-value=3.8 Score=33.99 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=29.3
Q ss_pred CCcceeHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q psy1083 20 KSGLISTNELQMALSNGTW-KPFNAETVRLMIGMFDKNNTGQISFEDFGALWKY 72 (173)
Q Consensus 20 ~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 72 (173)
+.|.+++++|..+.+.+.. ...+..++..+|..+..+ .+.++.++|..++..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHH
Confidence 4566666666665554221 223556666666666432 245666666666654
No 135
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=86.48 E-value=1.2 Score=29.50 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=31.4
Q ss_pred HHHHHHHhhCC-------CCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCC
Q psy1083 8 FLRDIFQRVDR-------DKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNN 57 (173)
Q Consensus 8 ~~~~~F~~~D~-------~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~ 57 (173)
.++++...|.. ++.+.|+++.|+.++++.+...++++.++.+|..|....
T Consensus 26 klkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 26 KLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred HHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 46666666622 235589999999999987777789999999999885544
No 136
>KOG0035|consensus
Probab=86.30 E-value=4.7 Score=34.85 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCH--HHHHHHHH---hhCCCCCcceeHHHHHHHHHHH-------H
Q psy1083 73 VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGD--NTVDILMK---KFDHHGKGTILFDDFIHCCVML-------N 140 (173)
Q Consensus 73 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~--~~~~~~~~---~~~~~~~~~i~~~ef~~~l~~~-------~ 140 (173)
..+++..|..++....|.++.+++...|..+|...-. ..+.+++. .-+..+.|.+++.+|...|.+. .
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 4578899999999999999999999999999877653 22444444 4455556899999999999753 2
Q ss_pred HHHHHhhccCCCC
Q psy1083 141 LLTTSFSQHDEDK 153 (173)
Q Consensus 141 ~~~~~f~~~d~~~ 153 (173)
....+|+.+-++.
T Consensus 826 r~i~s~~d~~ktk 838 (890)
T KOG0035|consen 826 RAILAFEDWAKTK 838 (890)
T ss_pred HHHHHHHHHHcch
Confidence 3455566654443
No 137
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=86.06 E-value=1.5 Score=27.08 Aligned_cols=60 Identities=10% Similarity=0.305 Sum_probs=35.8
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCC---CCCCCccHHHHHHHHHHH
Q psy1083 8 FLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDK---NNTGQISFEDFGALWKYV 73 (173)
Q Consensus 8 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~---~~~g~v~~~ef~~~~~~~ 73 (173)
++++-|..+.. +|.|+.+.|..++.. +-+.+.+..||..+.. -..+.||.+|...+|..+
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CIGM----~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECIGM----KDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhcCC----cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 36667777744 889999999998864 1355556666655422 113567777777666554
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.92 E-value=3.8 Score=33.87 Aligned_cols=63 Identities=10% Similarity=0.175 Sum_probs=40.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-C-CCCHHHHHHHHHhhCC-CCCcceeHHHHHHHHHH
Q psy1083 74 TDWQSCFKSFDKDNSGNIDKLELKTALGTFG-Y-RLGDNTVDILMKKFDH-HGKGTILFDDFIHCCVM 138 (173)
Q Consensus 74 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~-~~~~~~~~~~~~~~~~-~~~~~i~~~ef~~~l~~ 138 (173)
.++..+|..+.. ++.++.++|..+|.... . ..+.+.+..++..+.. -..+.+++++|.+||.+
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 355666666642 46788888877777743 2 2456667777776532 23567888888888864
No 139
>PLN02228 Phosphoinositide phospholipase C
Probab=85.54 E-value=4.9 Score=33.13 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=49.9
Q ss_pred CChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCCC----CCCCccHHHHHHHHH
Q psy1083 4 PPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTW-KPFNAETVRLMIGMFDKN----NTGQISFEDFGALWK 71 (173)
Q Consensus 4 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~l~~~~d~~----~~g~v~~~ef~~~~~ 71 (173)
.++.++..+|..+.. ++.++.++|.++|...=+ ...+.+.+..++..+... ..|.++++.|..++.
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 367889999999953 368999999999986322 234567788888887543 246799999998774
No 140
>KOG3866|consensus
Probab=85.13 E-value=1.9 Score=32.52 Aligned_cols=60 Identities=17% Similarity=0.325 Sum_probs=43.0
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHc-----CCCCCHHH-----------HHHHHHhhCCCCCcceeHHHHHHHH
Q psy1083 77 QSCFKSFDKDNSGNIDKLELKTALGTF-----GYRLGDNT-----------VDILMKKFDHHGKGTILFDDFIHCC 136 (173)
Q Consensus 77 ~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~~i~~~ef~~~l 136 (173)
...|..+|.|++|+++..|+..++..- ...-.++. -+.++...|.+.+..|+.++|++.-
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 567889999999999999998877652 11111111 1246677888889999999998864
No 141
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.08 E-value=4.3 Score=33.59 Aligned_cols=66 Identities=14% Similarity=0.237 Sum_probs=50.1
Q ss_pred CChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCC-CCCHHHHHHHHHhcCC-CCCCCccHHHHHHHHH
Q psy1083 4 PPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWK-PFNAETVRLMIGMFDK-NNTGQISFEDFGALWK 71 (173)
Q Consensus 4 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~l~~~~d~-~~~g~v~~~ef~~~~~ 71 (173)
..+.++..+|..+.. ++.++.++|..+|...=+. ..+.+.+..++..+.. ...+.++++.|..++.
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 356799999999953 5799999999999873222 3567788888887633 2356799999999874
No 142
>KOG1265|consensus
Probab=84.79 E-value=4.5 Score=34.97 Aligned_cols=68 Identities=19% Similarity=0.368 Sum_probs=54.2
Q ss_pred CChhHHHHHHHhhCCCCCcceeHHHHHHHHhc---------CCCCCCCHHHHHHHHHhcCCCC----CCCccHHHHHHHH
Q psy1083 4 PPPEFLRDIFQRVDRDKSGLISTNELQMALSN---------GTWKPFNAETVRLMIGMFDKNN----TGQISFEDFGALW 70 (173)
Q Consensus 4 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~---------~~~~~~~~~~~~~l~~~~d~~~----~g~v~~~ef~~~~ 70 (173)
+.+.++.++|..+-.+...++|.+++..+++. .+.++..+..+..++..+-.+. +|.++.+-|+.++
T Consensus 218 cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 218 CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh
Confidence 45678999999997777799999999999974 2345567889999999986554 5889999999876
Q ss_pred H
Q psy1083 71 K 71 (173)
Q Consensus 71 ~ 71 (173)
.
T Consensus 298 ~ 298 (1189)
T KOG1265|consen 298 M 298 (1189)
T ss_pred h
Confidence 4
No 143
>KOG4403|consensus
Probab=83.05 E-value=4.9 Score=31.73 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=58.9
Q ss_pred CCCCCccHHHHHHHHH----------HHHHHHHHHhhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCC
Q psy1083 56 NNTGQISFEDFGALWK----------YVTDWQSCFKSFDKDNSGNIDKLELKTALGT-FGYRLGDNTVDILMKKFDHHGK 124 (173)
Q Consensus 56 ~~~g~v~~~ef~~~~~----------~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 124 (173)
.++..++-.+||..-. ..+.++.+-+..|-|++|.|+.+|-..+++. +..+-+...-.+ .|-. .|
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~---~fH~-dD 115 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSE---KFHG-DD 115 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhh---hccC-Cc
Confidence 3445566666665432 1356788888899999999999988888876 333222222222 2222 26
Q ss_pred cceeHHHHHHHHHH--------------------HHHHHHHhhccCCCCC
Q psy1083 125 GTILFDDFIHCCVM--------------------LNLLTTSFSQHDEDKD 154 (173)
Q Consensus 125 ~~i~~~ef~~~l~~--------------------~~~~~~~f~~~d~~~~ 154 (173)
..|+-+++...+.. ++.+.++|+....+|.
T Consensus 116 ~~ItVedLWeaW~~Sev~nWT~e~tvqWLi~~VeLPqyve~fk~~kv~G~ 165 (575)
T KOG4403|consen 116 KHITVEDLWEAWKESEVHNWTNERTVQWLINDVELPQYVEAFKAKKVDGK 165 (575)
T ss_pred cceeHHHHHHHHHhhhhhcchHHHHHHHHHHhcccHHHHHHHHhccCCcc
Confidence 67877776665532 3567788887766554
No 144
>PLN02228 Phosphoinositide phospholipase C
Probab=83.02 E-value=7.5 Score=32.12 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=34.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcC-CC-CCHHHHHHHHHhhCCC----CCcceeHHHHHHHHHH
Q psy1083 75 DWQSCFKSFDKDNSGNIDKLELKTALGTFG-YR-LGDNTVDILMKKFDHH----GKGTILFDDFIHCCVM 138 (173)
Q Consensus 75 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~-~~~~~~~~~~~~~~~~----~~~~i~~~ef~~~l~~ 138 (173)
++..+|..+-. ++.++.++|..+|.... .. .+.+.+..++..+... ..+.++.++|..||.+
T Consensus 25 ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 25 SIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 34444544432 24566666666665532 22 3344556666665432 2356888888888764
No 145
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=80.47 E-value=11 Score=25.03 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=12.6
Q ss_pred cccHHHHHHHHHH-cCCCCCHHHHHHHHHhh
Q psy1083 90 NIDKLELKTALGT-FGYRLGDNTVDILMKKF 119 (173)
Q Consensus 90 ~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~ 119 (173)
.|+.+-|+.+|+. +...++++-++.+|..|
T Consensus 48 ~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF 78 (138)
T PF14513_consen 48 PIDYEGFKLFMKTYLEVDLPEDLCQHLFLSF 78 (138)
T ss_dssp EE-HHHHHHHHHHHTT-S--HHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4555555555554 33334444444554444
No 146
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=80.36 E-value=1.9 Score=27.55 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q psy1083 41 FNAETVRLMIGMFDKNNTGQISFEDFGALWKY 72 (173)
Q Consensus 41 ~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 72 (173)
+++++++.++..+-.+..|+|.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 57889999999998999999999999987753
No 147
>PLN02230 phosphoinositide phospholipase C 4
Probab=80.36 E-value=9 Score=31.88 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=46.6
Q ss_pred CChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCC--CCCHHHHHHHHHhc-------CCCCCCCccHHHHHHHHH
Q psy1083 4 PPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWK--PFNAETVRLMIGMF-------DKNNTGQISFEDFGALWK 71 (173)
Q Consensus 4 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~l~~~~-------d~~~~g~v~~~ef~~~~~ 71 (173)
.++.+++.+|..+. .+++.++.++|.++|...=.. ..+.+.+..++..+ ..-+.+.++++.|..++.
T Consensus 26 ~p~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 26 GPVADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred CCcHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 35678999999995 445899999999999873212 23556666666543 112345699999998764
No 148
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=78.16 E-value=11 Score=21.71 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH
Q psy1083 93 KLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 93 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~ 138 (173)
.+++..+++..|..++..++..+++.-+..+-...+-+.+.+||..
T Consensus 16 d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~G 61 (68)
T PF07308_consen 16 DDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNG 61 (68)
T ss_pred hHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHH
Confidence 4678888888888899999988888866554445555666666543
No 149
>PLN02223 phosphoinositide phospholipase C
Probab=77.49 E-value=5.2 Score=32.69 Aligned_cols=64 Identities=9% Similarity=-0.051 Sum_probs=37.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHH---HHc-C-CCCCHHHHHHHHHhhCCC--------CCcceeHHHHHHHHHHH
Q psy1083 75 DWQSCFKSFDKDNSGNIDKLELKTAL---GTF-G-YRLGDNTVDILMKKFDHH--------GKGTILFDDFIHCCVML 139 (173)
Q Consensus 75 ~~~~~f~~~D~~~~g~i~~~e~~~~l---~~~-~-~~~~~~~~~~~~~~~~~~--------~~~~i~~~ef~~~l~~~ 139 (173)
.+..+|..+- .+.|.++.+.+..++ ... | ...+.++.+.++..+-.. ..+.++.++|.+||.+.
T Consensus 17 ~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 17 LILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred HHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 4555565552 456677777777766 332 2 134455555555443221 23569999999998754
No 150
>KOG3449|consensus
Probab=77.27 E-value=11 Score=23.84 Aligned_cols=44 Identities=9% Similarity=0.262 Sum_probs=38.6
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q psy1083 77 QSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFD 120 (173)
Q Consensus 77 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (173)
..+|.+....++...+..+++.+|..+|....++.++.++....
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 45677777788888999999999999999999999999999885
No 151
>KOG3866|consensus
Probab=76.62 E-value=13 Score=28.22 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=35.7
Q ss_pred HHhcCCCCCCCccHHHHHHHHHHH----------------------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcC
Q psy1083 50 IGMFDKNNTGQISFEDFGALWKYV----------------------TDWQSCFKSFDKDNSGNIDKLELKTALGTFG 104 (173)
Q Consensus 50 ~~~~d~~~~g~v~~~ef~~~~~~~----------------------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 104 (173)
|...|.+++|.++-.+.-+++... .--+.+.+..|+|.+..||.+||...-..-.
T Consensus 250 F~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 250 FALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred eeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 334466667777766666665421 1124567788999999999888877665543
No 152
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=76.31 E-value=12 Score=23.92 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=36.1
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q psy1083 77 QSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFD 120 (173)
Q Consensus 77 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (173)
..+|.+.-.-++..+|.++++.+|...|..+.+..+..+++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 34455555567778999999999999999999999998888875
No 153
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=74.39 E-value=5.5 Score=27.73 Aligned_cols=52 Identities=12% Similarity=0.249 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy1083 67 GALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKK 118 (173)
Q Consensus 67 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 118 (173)
...+.+.+.++++|..||...--..+.+++..+|...|+--....++..+.+
T Consensus 48 ~tVL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~N 99 (188)
T COG2818 48 LTVLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINN 99 (188)
T ss_pred HHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHH
Confidence 3455567889999999999999999999999999887765555555554443
No 154
>PLN02223 phosphoinositide phospholipase C
Probab=73.25 E-value=17 Score=29.89 Aligned_cols=67 Identities=6% Similarity=0.049 Sum_probs=46.7
Q ss_pred ChhHHHHHHHhhCCCCCcceeHHHHHHHH---hcCC-CCCCCHHHHHHHHHhcCCC--------CCCCccHHHHHHHHHH
Q psy1083 5 PPEFLRDIFQRVDRDKSGLISTNELQMAL---SNGT-WKPFNAETVRLMIGMFDKN--------NTGQISFEDFGALWKY 72 (173)
Q Consensus 5 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l---~~~~-~~~~~~~~~~~l~~~~d~~--------~~g~v~~~ef~~~~~~ 72 (173)
.+++++.+|..+ .+++|.++.+.+++++ ...- ....+.+.++.++..+-.. ..+.++++.|..++..
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 677899999999 5789999999999998 3321 2234555566666543211 1256999999987743
No 155
>KOG2871|consensus
Probab=73.07 E-value=4 Score=31.57 Aligned_cols=61 Identities=31% Similarity=0.439 Sum_probs=40.1
Q ss_pred ChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCC-HHHHHHHHHhcCCCCCCCccHHHH
Q psy1083 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFN-AETVRLMIGMFDKNNTGQISFEDF 66 (173)
Q Consensus 5 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-~~~~~~l~~~~d~~~~g~v~~~ef 66 (173)
..++++++|+.+|+..+|.|+.+-++.++.. .+...+ ++.+..+=+.+++..-|-+-..+|
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~-~N~~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTA-LNRLVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHH-hcccccCHHHHHHhcCccChhhcceEEeccc
Confidence 3566999999999999999999999998887 333333 344444444455544444444443
No 156
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=73.01 E-value=3.9 Score=23.67 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 88 SGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 88 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
+-.+++..+-.++.. .++......+...|+.-..++|+.++|+..++.+
T Consensus 6 sp~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345555555555544 3555566666666655557888888888888754
No 157
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=72.29 E-value=16 Score=23.11 Aligned_cols=44 Identities=11% Similarity=0.287 Sum_probs=36.3
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q psy1083 77 QSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFD 120 (173)
Q Consensus 77 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (173)
..+|.+....++..+|.+++..+|+..|..+.+..+..+++.+.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 34555565677889999999999999999999988888888775
No 158
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=68.96 E-value=11 Score=19.59 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=22.1
Q ss_pred HHHHHHHhhCC--CCCcceeHHHHHHHHhc
Q psy1083 8 FLRDIFQRVDR--DKSGLISTNELQMALSN 35 (173)
Q Consensus 8 ~~~~~F~~~D~--~~~g~i~~~e~~~~l~~ 35 (173)
.+-.+|..|.. .....++..||+.++..
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 36788999952 35678999999999876
No 159
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=68.14 E-value=13 Score=21.01 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=18.0
Q ss_pred hhhCCCCCCcccHHHHHHHHHH
Q psy1083 81 KSFDKDNSGNIDKLELKTALGT 102 (173)
Q Consensus 81 ~~~D~~~~g~i~~~e~~~~l~~ 102 (173)
+++|+..+.+|+.+++.++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4678888888888888888876
No 160
>KOG3077|consensus
Probab=67.94 E-value=47 Score=24.60 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=43.2
Q ss_pred CChhHHHHHHHhh-CCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q psy1083 4 PPPEFLRDIFQRV-DRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWK 71 (173)
Q Consensus 4 ~~~~~~~~~F~~~-D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 71 (173)
.++..+.+.|..+ |++.+..|-.+-+..+...++..+ ..-..-.+.-++....-+..+-++|..-+.
T Consensus 61 ~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p-~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~ 128 (260)
T KOG3077|consen 61 VSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEP-EDISVLVLAWKLGAATMCEFSREEFLKGMT 128 (260)
T ss_pred ccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCc-hhHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 3455688888887 333445899999999988843333 333333333445555567888899888654
No 161
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=67.16 E-value=26 Score=21.43 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=42.7
Q ss_pred CCcceeHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH-------HHHHHHHhhhCCCCCCcc
Q psy1083 20 KSGLISTNELQMALSNGTW-KPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV-------TDWQSCFKSFDKDNSGNI 91 (173)
Q Consensus 20 ~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-------~~~~~~f~~~D~~~~g~i 91 (173)
.+|.++..|...+-..+.. ..+++.+...+...+........++.+|...+... .-+..+|..- -.+|.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA--~ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVA--YADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCCC
Confidence 4788888887776543211 24566666777666655555557777777755431 1123333332 345666
Q ss_pred cHHHHH
Q psy1083 92 DKLELK 97 (173)
Q Consensus 92 ~~~e~~ 97 (173)
+..|-.
T Consensus 90 ~~~E~~ 95 (104)
T cd07313 90 DEYEEH 95 (104)
T ss_pred CHHHHH
Confidence 665544
No 162
>KOG0506|consensus
Probab=66.01 E-value=51 Score=26.79 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=45.8
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh---C-----CCCCcceeHHHHHHHHH
Q psy1083 77 QSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKF---D-----HHGKGTILFDDFIHCCV 137 (173)
Q Consensus 77 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---~-----~~~~~~i~~~ef~~~l~ 137 (173)
.-+|..+-...++.++...|..+|+..|.+-++..++.++... + ....+.++.+-|-.++.
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 3457777656679999999999999999988887777666543 2 22345788888888874
No 163
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=64.85 E-value=33 Score=21.65 Aligned_cols=22 Identities=9% Similarity=0.317 Sum_probs=13.1
Q ss_pred hhhCCCCCCcccHHHHHHHHHH
Q psy1083 81 KSFDKDNSGNIDKLELKTALGT 102 (173)
Q Consensus 81 ~~~D~~~~g~i~~~e~~~~l~~ 102 (173)
+.+|+..+.+|+.++++++...
T Consensus 10 RLYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC
Confidence 3456666666666666665554
No 164
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=64.18 E-value=30 Score=22.13 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=33.6
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q psy1083 79 CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFD 120 (173)
Q Consensus 79 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (173)
+|.+.-..++..+|.++++.+|...|..+.+..+..+++.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 344444456778999999999999999999888888888774
No 165
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.83 E-value=13 Score=25.88 Aligned_cols=53 Identities=9% Similarity=0.224 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy1083 66 FGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKK 118 (173)
Q Consensus 66 f~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 118 (173)
+...+.+.+.++.+|.-||...--..+.+++..++..-++--....++.++.+
T Consensus 45 W~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~N 97 (179)
T TIGR00624 45 WITVLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIAN 97 (179)
T ss_pred HHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHH
Confidence 34455677889999999999999999999999999876655556666666554
No 166
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=63.71 E-value=4 Score=24.31 Aligned_cols=44 Identities=16% Similarity=0.406 Sum_probs=24.4
Q ss_pred hHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCC
Q psy1083 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDK 55 (173)
Q Consensus 7 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~ 55 (173)
+.+++....- ...|.||++++..++.. ..++...+..++..+..
T Consensus 7 ~~i~~Li~~g--K~~G~lT~~eI~~~L~~---~~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 7 EAIKKLIEKG--KKKGYLTYDEINDALPE---DDLDPEQIDEIYDTLED 50 (82)
T ss_dssp HHHHHHHHHH--HHHSS-BHHHHHHH-S----S---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--hhcCcCCHHHHHHHcCc---cCCCHHHHHHHHHHHHH
Confidence 3455544443 35778888888888764 33566777777776633
No 167
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=61.83 E-value=11 Score=26.36 Aligned_cols=51 Identities=12% Similarity=0.328 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy1083 68 ALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKK 118 (173)
Q Consensus 68 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 118 (173)
..+.+.+.++.+|..||...--..+.+++..++..-++--....++.++.+
T Consensus 48 tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~N 98 (187)
T PRK10353 48 TVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGN 98 (187)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHH
Confidence 345567889999999999988888999999999776654455566655554
No 168
>KOG2871|consensus
Probab=60.89 E-value=11 Score=29.41 Aligned_cols=59 Identities=19% Similarity=0.394 Sum_probs=39.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHH-HHHHHHhhCCCCCcceeHHHH
Q psy1083 74 TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT-VDILMKKFDHHGKGTILFDDF 132 (173)
Q Consensus 74 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~ef 132 (173)
+.++++|+.+|+.++|+|+-.-++.++.+.+..+++.. +.-+-...++..-|.|-.++|
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccc
Confidence 46899999999999999999999999998774444433 222222344444444444443
No 169
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=60.45 E-value=13 Score=23.82 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHH
Q psy1083 107 LGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~ 139 (173)
++++..+.+...+-.+..|.|.|.+|++-+...
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 578888889999989999999999999987644
No 170
>KOG1785|consensus
Probab=60.19 E-value=85 Score=24.91 Aligned_cols=93 Identities=13% Similarity=0.142 Sum_probs=61.2
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccH---HHHHHHHHHHHHHHHHHhhhCC
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISF---EDFGALWKYVTDWQSCFKSFDK 85 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~---~ef~~~~~~~~~~~~~f~~~D~ 85 (173)
....|+.. -.+.-.+..+.|+.++..+.... +--++..+-...|...++.|+. +-|.+++.....+..-|..+..
T Consensus 177 A~~FWr~~-fg~k~ivPW~~F~q~L~~~Hpi~-~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw~tllkNWq~Lav 254 (563)
T KOG1785|consen 177 AAEFWRKH-FGKKTIVPWKTFRQALHKVHPIS-SGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWKTLLKNWQTLAV 254 (563)
T ss_pred HHHHHHHh-cCCcccccHHHHHHHHHhcCCCc-chhHHHHhhceeccccccceeeehhhhHHHhhccHHHHHHhhhhhhc
Confidence 33444444 34566788999999988743222 2234445555677788887764 4455666666677777777777
Q ss_pred CCCCc---ccHHHHHHHHHHc
Q psy1083 86 DNSGN---IDKLELKTALGTF 103 (173)
Q Consensus 86 ~~~g~---i~~~e~~~~l~~~ 103 (173)
.+-|+ ++.+|++.-|.+.
T Consensus 255 tHPGYmAFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 255 THPGYMAFLTYDEVKARLQKY 275 (563)
T ss_pred cCCceeEEeeHHHHHHHHHHH
Confidence 77775 7889998888763
No 171
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=59.96 E-value=41 Score=21.22 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=28.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q psy1083 90 NIDKLELKTALGTFGYRLGDNTVDILMKKFD 120 (173)
Q Consensus 90 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (173)
.||.+++..+|...|..+.+..+..++..+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 8999999999999999999999888888874
No 172
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=59.95 E-value=14 Score=15.86 Aligned_cols=14 Identities=21% Similarity=0.655 Sum_probs=6.8
Q ss_pred CCCCCCcccHHHHH
Q psy1083 84 DKDNSGNIDKLELK 97 (173)
Q Consensus 84 D~~~~g~i~~~e~~ 97 (173)
|.+++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34555555555543
No 173
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=58.29 E-value=44 Score=21.02 Aligned_cols=30 Identities=13% Similarity=0.344 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q psy1083 91 IDKLELKTALGTFGYRLGDNTVDILMKKFD 120 (173)
Q Consensus 91 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (173)
+|.+++..+|...|..+.+..+..+++.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa 46 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN 46 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc
Confidence 999999999999999999999998888874
No 174
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.95 E-value=31 Score=19.90 Aligned_cols=32 Identities=6% Similarity=0.126 Sum_probs=20.2
Q ss_pred CCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHh
Q psy1083 20 KSGLISTNELQMALSNGTWKPFNAETVRLMIGM 52 (173)
Q Consensus 20 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~ 52 (173)
.+..||.+-++..+.+ .+...++..++.+.+.
T Consensus 35 ~NPpine~~iR~M~~q-mGqKpSe~kI~Qvm~~ 66 (71)
T COG3763 35 DNPPINEEMIRMMMAQ-MGQKPSEKKINQVMRS 66 (71)
T ss_pred hCCCCCHHHHHHHHHH-hCCCchHHHHHHHHHH
Confidence 4666777777776666 4555566666666554
No 175
>KOG4070|consensus
Probab=57.76 E-value=37 Score=22.91 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=42.7
Q ss_pred hHHHHHHHhhCC----CCCc-ceeHHHHHHHHhcCC---CCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Q psy1083 7 EFLRDIFQRVDR----DKSG-LISTNELQMALSNGT---WKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV 73 (173)
Q Consensus 7 ~~~~~~F~~~D~----~~~g-~i~~~e~~~~l~~~~---~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 73 (173)
..+++.|+.|.. ..+| .++-+.+.+++.... +..++.-.....|.++.....+.++|++|...+..+
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~el 86 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEEL 86 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHH
Confidence 347777777743 3333 588888888887631 233444555566666655556788999987766544
No 176
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=57.65 E-value=26 Score=19.86 Aligned_cols=34 Identities=6% Similarity=0.133 Sum_probs=24.6
Q ss_pred CCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q psy1083 19 DKSGLISTNELQMALSNGTWKPFNAETVRLMIGMF 53 (173)
Q Consensus 19 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~ 53 (173)
..+..||.+.++.++.+ .+...++..++.+.+..
T Consensus 27 ~~NPpine~mir~M~~Q-MG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 27 KENPPINEKMIRAMMMQ-MGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HHCCCCCHHHHHHHHHH-hCCCccHHHHHHHHHHH
Confidence 35777888888888887 66666777777776543
No 177
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=54.40 E-value=17 Score=23.64 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=43.7
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH-------HHHHHHHhhccCCCCCCce
Q psy1083 87 NSGNIDKLELKTALGTF--GYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM-------LNLLTTSFSQHDEDKDGVV 157 (173)
Q Consensus 87 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~-------~~~~~~~f~~~d~~~~g~i 157 (173)
.||.|+.+|...+...+ ...+++.....+...++.-.....++.+++..+.. ..-+..++..... ||.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~A--DG~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYA--DGEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTC--TTC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhc--CCCC
Confidence 56888888877666554 23355666666666665544445667777766643 1234455666544 4555
Q ss_pred eeeHHHHHHh
Q psy1083 158 TLHYEQFLSM 167 (173)
Q Consensus 158 ~~~~~~~~~~ 167 (173)
+....+++.-
T Consensus 114 ~~~E~~~l~~ 123 (140)
T PF05099_consen 114 SPEEQEFLRR 123 (140)
T ss_dssp SCCHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5555555543
No 178
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=54.15 E-value=18 Score=20.52 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=31.1
Q ss_pred CCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCC
Q psy1083 19 DKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNN 57 (173)
Q Consensus 19 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~ 57 (173)
+.++.++..++.+.+.. .+..++++.+.+.++.++.++
T Consensus 9 ~~~~P~g~~~l~~~L~~-~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKL-RGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HcCCCCCHHHHHHHHHh-cChhhhHHHHHHHHHHHHHCC
Confidence 46678999999999987 577888899999999886654
No 179
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=53.95 E-value=47 Score=20.03 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=34.8
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHH
Q psy1083 89 GNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCV 137 (173)
Q Consensus 89 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~ 137 (173)
..||.+||.+..+..+.++++...+.++.......=.-.+-++=...+.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llk 61 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLK 61 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 4688999999999999999999988888887654333334444344443
No 180
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=53.80 E-value=53 Score=20.77 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=33.5
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q psy1083 78 SCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFD 120 (173)
Q Consensus 78 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (173)
..+..+..-+. -|+.+.++.++...|..+.+..++.++..+.
T Consensus 5 ~a~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLe 46 (109)
T COG2058 5 YAYLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALE 46 (109)
T ss_pred HHHHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc
Confidence 34444543333 8999999999999999999999998888875
No 181
>PRK00523 hypothetical protein; Provisional
Probab=53.75 E-value=33 Score=19.96 Aligned_cols=34 Identities=6% Similarity=0.082 Sum_probs=22.9
Q ss_pred CCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q psy1083 19 DKSGLISTNELQMALSNGTWKPFNAETVRLMIGMF 53 (173)
Q Consensus 19 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~ 53 (173)
..+..||.+-++..+.+ .+...++..++.+.+..
T Consensus 35 ~~NPpine~mir~M~~Q-MGqKPSekki~Q~m~~m 68 (72)
T PRK00523 35 RENPPITENMIRAMYMQ-MGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHCcCCCHHHHHHHHHH-hCCCccHHHHHHHHHHH
Confidence 35677777777777777 55666777777666554
No 182
>KOG1954|consensus
Probab=52.43 E-value=37 Score=26.83 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=39.2
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHH
Q psy1083 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68 (173)
Q Consensus 9 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~ 68 (173)
+.++|..+ ..-+|.|+-..-++.+-. ..++...+-.+++..|.+.+|.++-+||..
T Consensus 446 yde~fy~l-~p~~gk~sg~~ak~~mv~---sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTL-SPVNGKLSGRNAKKEMVK---SKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhcc-cccCceeccchhHHHHHh---ccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 55667766 456777777766665432 456677778888888888888888888764
No 183
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=51.88 E-value=12 Score=26.03 Aligned_cols=52 Identities=12% Similarity=0.293 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy1083 68 ALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKF 119 (173)
Q Consensus 68 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 119 (173)
..+.+.+.++.+|.-||.+.-...+.+++..++..-+.--....++.++.+.
T Consensus 43 ~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA 94 (179)
T PF03352_consen 43 TILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNA 94 (179)
T ss_dssp HHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 3455677899999999998888899999999987766555666776666554
No 184
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=51.79 E-value=57 Score=20.32 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh----CCCCCcceeHHHHHHHHHHH
Q psy1083 73 VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKF----DHHGKGTILFDDFIHCCVML 139 (173)
Q Consensus 73 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~ef~~~l~~~ 139 (173)
...++.-|..+-. +|+|+..+|.+.+ |..-+.+-..+++..+ ... ...|+.+|+..++..+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHh
Confidence 4456677777765 7899999988776 5544555555555543 333 5689998888886544
No 185
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.67 E-value=63 Score=21.59 Aligned_cols=82 Identities=13% Similarity=0.089 Sum_probs=51.5
Q ss_pred CCCcceeHHHHHHHHhcC-CCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH-H------HHHHHHHHhhhCCCCCCc
Q psy1083 19 DKSGLISTNELQMALSNG-TWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWK-Y------VTDWQSCFKSFDKDNSGN 90 (173)
Q Consensus 19 ~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~-~------~~~~~~~f~~~D~~~~g~ 90 (173)
+.+|.++.+|..++..-+ ....++...+..+......-+...+++..|.+.+. . ++-+..++++. ..+|.
T Consensus 40 ~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweIa--~ADg~ 117 (148)
T COG4103 40 EADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEIA--YADGE 117 (148)
T ss_pred hcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--Hcccc
Confidence 346777777765544321 13456777888888777666667788888887664 2 23344555554 46677
Q ss_pred ccHHHHHHHHHH
Q psy1083 91 IDKLELKTALGT 102 (173)
Q Consensus 91 i~~~e~~~~l~~ 102 (173)
++..|-.-+++.
T Consensus 118 l~e~Ed~vi~Rv 129 (148)
T COG4103 118 LDESEDHVIWRV 129 (148)
T ss_pred ccHHHHHHHHHH
Confidence 777776666655
No 186
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.34 E-value=58 Score=21.76 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=47.8
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH-------HHHHHHHhhc
Q psy1083 78 SCFKSFDKDNSGNIDKLELKTALGTF--GYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM-------LNLLTTSFSQ 148 (173)
Q Consensus 78 ~~f~~~D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~-------~~~~~~~f~~ 148 (173)
-+|+.. ..+|.++..|...+..-+ ...++...+..++.....-+...+++-.|.+-|.+ .+-+...|+.
T Consensus 34 Llf~Vm--~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVM--EADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHH--hcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 456665 456778777765544332 45688888888888876666778888899988873 2334555666
Q ss_pred cCC
Q psy1083 149 HDE 151 (173)
Q Consensus 149 ~d~ 151 (173)
.-.
T Consensus 112 a~A 114 (148)
T COG4103 112 AYA 114 (148)
T ss_pred HHc
Confidence 533
No 187
>PHA02335 hypothetical protein
Probab=49.80 E-value=51 Score=20.76 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=26.8
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy1083 57 NTGQISFEDFGALWKYVTDWQSCFKSFDKDNS 88 (173)
Q Consensus 57 ~~g~v~~~ef~~~~~~~~~~~~~f~~~D~~~~ 88 (173)
.-.+||+++|..-+.++.-+...|+.+...++
T Consensus 21 np~sVt~ddf~~DlkRi~yIkrllKRy~~~~~ 52 (118)
T PHA02335 21 NPQSVTYDDFEEDLKRFKYIKRLFKRYLNTGE 52 (118)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 34679999999999999999999999975543
No 188
>KOG4004|consensus
Probab=47.15 E-value=9.1 Score=27.05 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=33.6
Q ss_pred HhhhCC-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHH
Q psy1083 80 FKSFDK-DNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCV 137 (173)
Q Consensus 80 f~~~D~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~ 137 (173)
|-.+|. ..+|++|-.|+..+-..+ -+.+.-+..++..+|.++||.|+..||..++.
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCccccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 444443 457777776665433221 13345566777777877788888877766643
No 189
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=47.03 E-value=28 Score=18.59 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=20.7
Q ss_pred CCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCC
Q psy1083 20 KSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKN 56 (173)
Q Consensus 20 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~ 56 (173)
.+|.|+..+|+..+.. +...+-.++..+|..
T Consensus 7 ~~~~itv~~~rd~lg~------sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 7 KNGEITVAEFRDLLGL------SRKYAIPLLEYLDRE 37 (50)
T ss_dssp TTSSBEHHHHHHHHTS-------HHHHHHHHHHHHHT
T ss_pred cCCcCcHHHHHHHHCc------cHHHHHHHHHHHhcc
Confidence 3778888888888764 566666666666543
No 190
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=46.46 E-value=50 Score=21.43 Aligned_cols=31 Identities=3% Similarity=0.012 Sum_probs=13.2
Q ss_pred cceeHHHHHHHHhcCCCCCCCHHHHHHHHHh
Q psy1083 22 GLISTNELQMALSNGTWKPFNAETVRLMIGM 52 (173)
Q Consensus 22 g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~ 52 (173)
+.|+.+.+..++...-+..++..++..+...
T Consensus 49 ~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~ 79 (122)
T PF06648_consen 49 DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNR 79 (122)
T ss_pred CCCCHHHHHHHHhcccHhhcCHHHHHHHHHH
Confidence 3444444444444422234444444444433
No 191
>PRK01844 hypothetical protein; Provisional
Probab=46.42 E-value=46 Score=19.35 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=22.1
Q ss_pred CCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q psy1083 19 DKSGLISTNELQMALSNGTWKPFNAETVRLMIGMF 53 (173)
Q Consensus 19 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~ 53 (173)
.++..||.+-++..+.+ .+...++..++.+.+..
T Consensus 34 k~NPpine~mir~Mm~Q-MGqkPSekki~Q~m~~m 67 (72)
T PRK01844 34 QKNPPINEQMLKMMMMQ-MGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHCCCCCHHHHHHHHHH-hCCCccHHHHHHHHHHH
Confidence 35667777777777776 55556676666666544
No 192
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=44.85 E-value=34 Score=19.17 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHH
Q psy1083 90 NIDKLELKTALGTFGYRLGDNTVDI 114 (173)
Q Consensus 90 ~i~~~e~~~~l~~~~~~~~~~~~~~ 114 (173)
.|+.++|..+|+.+.-.++.++++.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4788899999988887788777764
No 193
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=43.40 E-value=55 Score=22.04 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q psy1083 61 ISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTF 103 (173)
Q Consensus 61 v~~~ef~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 103 (173)
-+...|......++.+..-....|..+.+++|..+++.+.-.+
T Consensus 56 ~~l~gW~q~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 56 PQLDGWHQGMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 3555677777788888888888999999999999999877654
No 194
>PHA02335 hypothetical protein
Probab=40.24 E-value=95 Score=19.59 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=31.7
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy1083 112 VDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDG 155 (173)
Q Consensus 112 ~~~~~~~~~~~~~~~i~~~ef~~~l~~~~~~~~~f~~~d~~~~g 155 (173)
+...++.+.. -..|++++|..=+.+...+.+.|+.|...+.-
T Consensus 12 m~fAi~~Y~n--p~sVt~ddf~~DlkRi~yIkrllKRy~~~~~~ 53 (118)
T PHA02335 12 MLFAIKNYNN--PQSVTYDDFEEDLKRFKYIKRLFKRYLNTGEL 53 (118)
T ss_pred HHHHHHhcCC--cccccHHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 4455666652 45789999999888888888889888776664
No 195
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=38.67 E-value=72 Score=17.74 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy1083 88 SGNIDKLELKTALGTFGYRLGDNTVDILMKKF 119 (173)
Q Consensus 88 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 119 (173)
+-.+|.+|+...+..++..++..++-.+...+
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 34577888888888888777777766666554
No 196
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=38.15 E-value=1.3e+02 Score=20.66 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy1083 91 IDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKD 154 (173)
Q Consensus 91 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~~~~~~~~f~~~d~~~~ 154 (173)
|...+.+.-|++.|+.......+.++..+-.+++|.| |..|-. +..+-..||.+++
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~~-y~~~~~-------iknlm~~yd~dgd 57 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGAM-YTNIQG-------IKNLMSQYDKDGD 57 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCce-eehHHH-------HHHHHHhcCCCCc
Confidence 3445677778888888777777777777766666665 444422 5555666766655
No 197
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=37.75 E-value=1.1e+02 Score=19.56 Aligned_cols=45 Identities=7% Similarity=-0.025 Sum_probs=33.4
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q psy1083 8 FLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMF 53 (173)
Q Consensus 8 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~ 53 (173)
++--.|-..-.-++..+|.+++.+++.. .+....+..+..+++.+
T Consensus 4 kyvaAYlL~~lgG~~~pTaddI~kIL~A-aGveVd~~~~~l~~~~L 48 (112)
T PTZ00373 4 KYVAAYLMCVLGGNENPTKKEVKNVLSA-VNADVEDDVLDNFFKSL 48 (112)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHH-cCCCccHHHHHHHHHHH
Confidence 4555566665556777899999999998 56677777788887777
No 198
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=37.32 E-value=40 Score=18.85 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=16.2
Q ss_pred HHHHHhhCCCCCcceeHHHHHHHHh
Q psy1083 10 RDIFQRVDRDKSGLISTNELQMALS 34 (173)
Q Consensus 10 ~~~F~~~D~~~~g~i~~~e~~~~l~ 34 (173)
.++|..| .+++|.|+..++...|.
T Consensus 10 dkA~e~y-~~~~g~i~lkdIA~~Lg 33 (60)
T PF10668_consen 10 DKAFEIY-KESNGKIKLKDIAEKLG 33 (60)
T ss_pred HHHHHHH-HHhCCCccHHHHHHHHC
Confidence 3455555 45678888888877765
No 199
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=36.37 E-value=1e+02 Score=18.74 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=24.3
Q ss_pred CCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q psy1083 20 KSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWK 71 (173)
Q Consensus 20 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 71 (173)
-+|.++..|...+-..+...+.+......+...+........++.+|...+.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 63 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFR 63 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 4778888777665543222233333333333333222222255666665543
No 200
>KOG0713|consensus
Probab=34.84 E-value=57 Score=25.13 Aligned_cols=50 Identities=4% Similarity=0.183 Sum_probs=33.3
Q ss_pred CCCChhHHHHHHHhh------CCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q psy1083 2 AMPPPEFLRDIFQRV------DRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMF 53 (173)
Q Consensus 2 ~m~~~~~~~~~F~~~------D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~ 53 (173)
.+++.++++++|+++ |++.+..--.++|.++-.. ...++...-++.+..+
T Consensus 26 k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~A--YEVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 26 KNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAA--YEVLSDPEKRKHYDTY 81 (336)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH--HHHhcCHHHHHHHHhh
Confidence 367889999999987 6777776666777765443 2344555555555554
No 201
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=34.66 E-value=1.2e+02 Score=19.09 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q psy1083 90 NIDKLELKTALGTFGYRLGDNTVDILMKKFD 120 (173)
Q Consensus 90 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (173)
.||.+.+..+|...|..+....+..+...+.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 8999999999999999999888888888875
No 202
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=34.08 E-value=87 Score=18.17 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=6.0
Q ss_pred ccHHHHHHHHH
Q psy1083 61 ISFEDFGALWK 71 (173)
Q Consensus 61 v~~~ef~~~~~ 71 (173)
++.++...+|.
T Consensus 46 ~~~eeiq~LCd 56 (71)
T PF04282_consen 46 MPVEEIQKLCD 56 (71)
T ss_pred CCHHHHHHHhH
Confidence 55555555543
No 203
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=33.96 E-value=1.2e+02 Score=19.09 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q psy1083 90 NIDKLELKTALGTFGYRLGDNTVDILMKKFD 120 (173)
Q Consensus 90 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (173)
.||.+.+..+|...|..+.+..+..+...+.
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~ 46 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 8999999999999999999888888888875
No 204
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=33.89 E-value=1.1e+02 Score=18.47 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=32.6
Q ss_pred cceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHH
Q psy1083 22 GLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALW 70 (173)
Q Consensus 22 g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 70 (173)
..||..|+.++-+. .+.+++.+++..++..+....-.-.+-++=..++
T Consensus 13 n~iT~~eLlkyskq-y~i~it~~QA~~I~~~lr~k~inIfn~~~r~~ll 60 (85)
T PF11116_consen 13 NNITAKELLKYSKQ-YNISITKKQAEQIANILRGKNINIFNEQERKKLL 60 (85)
T ss_pred hcCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 35788888888887 7788888888888887754443334444433333
No 205
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=33.58 E-value=54 Score=19.48 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=23.9
Q ss_pred HHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHH
Q psy1083 31 MALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALW 70 (173)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 70 (173)
++|....+..++++..+.+-+.++......|+|+|.+.+.
T Consensus 36 ~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 36 TWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4555444555666655555555555555668888877643
No 206
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=33.57 E-value=1.2e+02 Score=19.96 Aligned_cols=49 Identities=12% Similarity=0.233 Sum_probs=32.7
Q ss_pred CCcceeHHHHHHHHhcCCC--------CCCCHHHHHHHHHhcCCCCCC-CccHHHHHH
Q psy1083 20 KSGLISTNELQMALSNGTW--------KPFNAETVRLMIGMFDKNNTG-QISFEDFGA 68 (173)
Q Consensus 20 ~~g~i~~~e~~~~l~~~~~--------~~~~~~~~~~l~~~~d~~~~g-~v~~~ef~~ 68 (173)
++..||.+||.+++....+ ..+.++.++.+...+...+.+ .++..|-+.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr 137 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALR 137 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHH
Confidence 4567888999888875211 114677788887777665544 477777654
No 207
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=32.93 E-value=95 Score=21.70 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=19.0
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q psy1083 85 KDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFD 120 (173)
Q Consensus 85 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (173)
.+.+|+++.+++...+..-+..++.+++..++..-+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 356777777777776666555566777777666533
No 208
>KOG4301|consensus
Probab=32.59 E-value=1.4e+02 Score=23.24 Aligned_cols=93 Identities=9% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCCCccHHHHHHHHHHH------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHH------H
Q psy1083 45 TVRLMIGMFDKNNTGQISFEDFGALWKYV------TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT------V 112 (173)
Q Consensus 45 ~~~~l~~~~d~~~~g~v~~~ef~~~~~~~------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~------~ 112 (173)
....++..+|+.+.|+++.---.-.++.+ ++++.+|.... +.+|.+..-.+.+++..+...+++.. .
T Consensus 111 llaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~ 189 (434)
T KOG4301|consen 111 LLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGY 189 (434)
T ss_pred HHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcch
Q ss_pred HHHHHhhCCCCCcceeHHHHHHHHHH
Q psy1083 113 DILMKKFDHHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 113 ~~~~~~~~~~~~~~i~~~ef~~~l~~ 138 (173)
.+.........+.++.++.|+..+..
T Consensus 190 te~~a~~cf~qqrKv~Ln~fldtl~s 215 (434)
T KOG4301|consen 190 TELSARLCFLQQRKVELNQFLDTLMS 215 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
No 209
>KOG1785|consensus
Probab=32.33 E-value=2.6e+02 Score=22.35 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=52.2
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHH---HHHHHHHHHHHHHhhccCCCCCCcee-eeH
Q psy1083 86 DNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDF---IHCCVMLNLLTTSFSQHDEDKDGVVT-LHY 161 (173)
Q Consensus 86 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef---~~~l~~~~~~~~~f~~~d~~~~g~i~-~~~ 161 (173)
.....+....|.+.|.....-.+.-+.-.+-...|-..++.|+--|| .+...-+..+.+-|...-+.+.|++. ++|
T Consensus 186 g~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw~tllkNWq~LavtHPGYmAFLTY 265 (563)
T KOG1785|consen 186 GKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWKTLLKNWQTLAVTHPGYMAFLTY 265 (563)
T ss_pred CCcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhccHHHHHHhhhhhhccCCceeEEeeH
Confidence 34557778888888877543333333334444566667788775554 44444566777778888889999986 477
Q ss_pred HHHH
Q psy1083 162 EQFL 165 (173)
Q Consensus 162 ~~~~ 165 (173)
+|-.
T Consensus 266 DEVk 269 (563)
T KOG1785|consen 266 DEVK 269 (563)
T ss_pred HHHH
Confidence 7753
No 210
>KOG2301|consensus
Probab=31.31 E-value=51 Score=31.12 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=45.1
Q ss_pred ChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCC----HHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q psy1083 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFN----AETVRLMIGMFDKNNTGQISFEDFGALWK 71 (173)
Q Consensus 5 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~----~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 71 (173)
..+++.++|..+|++..|.|..+++..+++. +.+|+. ... +.+-..+....+|.|++.+-+..+.
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~-L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRS-LDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHh-cCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHH
Confidence 3466899999999999999999999999997 333321 111 3333334445667888888665543
No 211
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=30.31 E-value=1.3e+02 Score=18.18 Aligned_cols=50 Identities=14% Similarity=-0.067 Sum_probs=31.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHH
Q psy1083 88 SGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCV 137 (173)
Q Consensus 88 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~ 137 (173)
.-.|.-.+|.+.|.....-.+..+...+-...|-..++.|+-=||--+.+
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 34577777777777754444445556666667777778888777766654
No 212
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=29.58 E-value=1.9e+02 Score=20.61 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=18.7
Q ss_pred CCcccHH-HHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHH
Q psy1083 88 SGNIDKL-ELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCV 137 (173)
Q Consensus 88 ~g~i~~~-e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~ 137 (173)
++.||.. -|..++..++... ++.++.+......+ -.+++|..++.
T Consensus 41 s~tiS~rd~~g~mf~~i~~s~-~Eile~llk~i~Id----p~fKef~e~ik 86 (220)
T COG4359 41 SKTISFRDGFGRMFGSIHSSL-EEILEFLLKDIKID----PGFKEFVEWIK 86 (220)
T ss_pred hCceeHHHHHHHHHHhcCCCH-HHHHHHHHhhcccC----ccHHHHHHHHH
Confidence 3444443 2344444444322 23333333334333 22555655554
No 213
>KOG4286|consensus
Probab=29.31 E-value=4e+02 Score=23.46 Aligned_cols=100 Identities=8% Similarity=0.037 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCC-CCccHHHHHHHHHHH-------------------HHHHHHHhhhCCC
Q psy1083 27 NELQMALSNGTWKPFNAETVRLMIGMFDKNNT-GQISFEDFGALWKYV-------------------TDWQSCFKSFDKD 86 (173)
Q Consensus 27 ~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~-g~v~~~ef~~~~~~~-------------------~~~~~~f~~~D~~ 86 (173)
..|+.+-+.+....++-.....+|...+..+. ..+...+.+..+... -.+..++..||+.
T Consensus 403 mKlr~LQK~l~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~ 482 (966)
T KOG4286|consen 403 MKLRRLQKALCLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTG 482 (966)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccC
Confidence 33444333322234455667777777766543 345666555543321 1245677899999
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcc
Q psy1083 87 NSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGT 126 (173)
Q Consensus 87 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (173)
++|.|..-+|+-.+..+.....++....+|.....++...
T Consensus 483 R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~ 522 (966)
T KOG4286|consen 483 RTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQC 522 (966)
T ss_pred CCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhH
Confidence 9999999999988877776677788889999887664443
No 214
>KOG0039|consensus
Probab=29.12 E-value=1.9e+02 Score=24.67 Aligned_cols=81 Identities=21% Similarity=0.394 Sum_probs=55.9
Q ss_pred CCCccHHHHHH-HHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc---CC-----CCCHHHHHHHHHhhCCCCCccee
Q psy1083 58 TGQISFEDFGA-LWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTF---GY-----RLGDNTVDILMKKFDHHGKGTIL 128 (173)
Q Consensus 58 ~g~v~~~ef~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~~-----~~~~~~~~~~~~~~~~~~~~~i~ 128 (173)
++ +++++|.. .....++++..|...|. ++|.++.+++..++... +. ..+.+....++...+.+..+.+.
T Consensus 2 ~~-~~~~~~~~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 79 (646)
T KOG0039|consen 2 EG-ISFQELKITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYIT 79 (646)
T ss_pred CC-cchhhhcccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceee
Confidence 45 78888871 11244678888999886 89999999998877763 11 12334445667777777777888
Q ss_pred HHHHHHHHHHHH
Q psy1083 129 FDDFIHCCVMLN 140 (173)
Q Consensus 129 ~~ef~~~l~~~~ 140 (173)
++++...+...+
T Consensus 80 ~~~~~~ll~~~~ 91 (646)
T KOG0039|consen 80 NEDLEILLLQIP 91 (646)
T ss_pred ecchhHHHHhch
Confidence 888877777554
No 215
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=29.04 E-value=2.4e+02 Score=20.95 Aligned_cols=97 Identities=10% Similarity=0.092 Sum_probs=54.9
Q ss_pred CCCcceeHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH-----HH----HHHHHhhhCCCCC
Q psy1083 19 DKSGLISTNELQMALSNGT-WKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV-----TD----WQSCFKSFDKDNS 88 (173)
Q Consensus 19 ~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-----~~----~~~~f~~~D~~~~ 88 (173)
.-+|.++..|.. +.+.+. ...++++.-..+...+........++.+|+..+... +. ++.+|..- -.|
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA--~AD 143 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAA--FAD 143 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--Hhc
Confidence 469999999998 344321 134455553333333333444558899999876532 11 23444443 356
Q ss_pred CcccHHHHHHHHHHc-CCCCCHHHHHHHHHh
Q psy1083 89 GNIDKLELKTALGTF-GYRLGDNTVDILMKK 118 (173)
Q Consensus 89 g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~ 118 (173)
|.++..|-.-+..-. ...+++.+...+...
T Consensus 144 G~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 144 GSLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 889988754333321 234777777666555
No 216
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=28.56 E-value=1.4e+02 Score=20.74 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=12.5
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q psy1083 87 NSGNIDKLELKTALGTFGYRLGDNTVDILM 116 (173)
Q Consensus 87 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 116 (173)
.+|++..+++...+...+..++.+.+.++.
T Consensus 30 ~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV 59 (179)
T PRK00819 30 EEGWVDIDALIEALAKAYKWVTRELLEAVV 59 (179)
T ss_pred CCCCEEHHHHHHHHHHccCCCCHHHHHHHH
Confidence 444444444444443322234444444443
No 217
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=27.98 E-value=1.6e+02 Score=18.43 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=27.9
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q psy1083 86 DNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFD 120 (173)
Q Consensus 86 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 120 (173)
+.+-.+|.+++..+++..|..+....+..+.+.+.
T Consensus 13 d~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~ 47 (103)
T cd05831 13 DDGIEITADNINALLKAAGVNVEPYWPGLFAKALE 47 (103)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 34557999999999999998888877777776664
No 218
>KOG0039|consensus
Probab=27.62 E-value=1.6e+02 Score=25.17 Aligned_cols=74 Identities=24% Similarity=0.334 Sum_probs=52.1
Q ss_pred CcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHH--------------HHHHHHHhhhCCC
Q psy1083 21 SGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYV--------------TDWQSCFKSFDKD 86 (173)
Q Consensus 21 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~--------------~~~~~~f~~~D~~ 86 (173)
++ ++.+|+. . . ..--+..++.+|..+|. ++|.++-+++..+.... +....++...|.+
T Consensus 2 ~~-~~~~~~~--~---~-~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK--I---T-DCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc--c---c-CCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 7888888 1 1 22246678888888877 77888888888765432 1234567788888
Q ss_pred CCCcccHHHHHHHHHH
Q psy1083 87 NSGNIDKLELKTALGT 102 (173)
Q Consensus 87 ~~g~i~~~e~~~~l~~ 102 (173)
+.|++...++...+..
T Consensus 74 ~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQ 89 (646)
T ss_pred ccceeeecchhHHHHh
Confidence 8888888888887754
No 219
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=27.12 E-value=90 Score=16.85 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=12.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHH
Q psy1083 88 SGNIDKLELKTALGTFGYRLGDNTVDI 114 (173)
Q Consensus 88 ~g~i~~~e~~~~l~~~~~~~~~~~~~~ 114 (173)
.|.|+.+||..-+...-...+..++..
T Consensus 21 ~GrL~~~Ef~~R~~~a~~A~t~~eL~~ 47 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYAARTRGELDA 47 (53)
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 455555555555444333333344333
No 220
>KOG2301|consensus
Probab=26.60 E-value=67 Score=30.40 Aligned_cols=64 Identities=11% Similarity=0.198 Sum_probs=44.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHHhhCCCCCcceeHHHHHHHHHH
Q psy1083 74 TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRL----GDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 74 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~ 138 (173)
+++.+++..+|+++.|.|...++..+++.+..++ .... +.+...+....++.|++.+-+..+..
T Consensus 1417 ~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred HHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 5678899999999999999999999999864332 1111 22333333345778888777776653
No 221
>COG5562 Phage envelope protein [General function prediction only]
Probab=26.25 E-value=49 Score=21.84 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=18.2
Q ss_pred CHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Q psy1083 42 NAETVRLMIGMFDKNNTGQISFEDFGALWKY 72 (173)
Q Consensus 42 ~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 72 (173)
+...+....+ .+.+|..||++|++.+..
T Consensus 73 n~~~i~~al~---~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 73 NTTLIKTALR---RHQSGQTTFEEFCSALAE 100 (137)
T ss_pred CHHHHHHHHH---HHhcCCccHHHHHHHHHh
Confidence 3444444444 466788999999986653
No 222
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=26.05 E-value=2.5e+02 Score=20.79 Aligned_cols=12 Identities=8% Similarity=0.324 Sum_probs=7.8
Q ss_pred CCccHHHHHHHH
Q psy1083 59 GQISFEDFGALW 70 (173)
Q Consensus 59 g~v~~~ef~~~~ 70 (173)
.-+=+-||...+
T Consensus 136 dDliLaEy~aTV 147 (251)
T TIGR02787 136 DDLVLAEYAATV 147 (251)
T ss_pred ccchhhhhHhHH
Confidence 457777777654
No 223
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=25.82 E-value=59 Score=20.14 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=11.4
Q ss_pred eHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q psy1083 25 STNELQMALSNGTWKPFNAETVRLMIGMF 53 (173)
Q Consensus 25 ~~~e~~~~l~~~~~~~~~~~~~~~l~~~~ 53 (173)
...+...++.- +...++++++..+...+
T Consensus 21 P~~Dy~PLlAL-L~r~Ltd~ev~~Va~~L 48 (96)
T PF11829_consen 21 PPTDYVPLLAL-LRRRLTDDEVAEVAAEL 48 (96)
T ss_dssp -HHHHHHHHHH-HTTTS-HHHHHHHHHHH
T ss_pred CCCccHHHHHH-hcccCCHHHHHHHHHHH
Confidence 33344444432 33345555555554444
No 224
>KOG4286|consensus
Probab=25.48 E-value=2.6e+02 Score=24.50 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=25.6
Q ss_pred HHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCC
Q psy1083 13 FQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKN 56 (173)
Q Consensus 13 F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~ 56 (173)
++.||...+|.|..-+|+-.+.. +.....++...++|......
T Consensus 476 lNvyD~~R~g~irvls~ki~~i~-lck~~leek~~ylF~~vA~~ 518 (966)
T KOG4286|consen 476 LNVYDTGRTGRIRVLSFKIGIIS-LCKAHLEDKYRYLFKQVASS 518 (966)
T ss_pred HHhcccCCCcceEEeeehhhHHH-HhcchhHHHHHHHHHHHcCc
Confidence 45667777777777777766665 33333445555777666433
No 225
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=25.10 E-value=2e+02 Score=18.68 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=9.6
Q ss_pred HHHHHhhCCCCCcceeHHHHHH
Q psy1083 113 DILMKKFDHHGKGTILFDDFIH 134 (173)
Q Consensus 113 ~~~~~~~~~~~~~~i~~~ef~~ 134 (173)
..++..||..+.|.|+--.|-.
T Consensus 100 n~Ll~vyD~~rtG~I~vls~Kv 121 (127)
T PF09068_consen 100 NWLLNVYDSQRTGKIRVLSFKV 121 (127)
T ss_dssp HHHHHHH-TT--SEEEHHHHHH
T ss_pred HHHHHHhCCCCCCeeehhHHHH
Confidence 3455555555555555544443
No 226
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=25.03 E-value=1.7e+02 Score=22.55 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=6.5
Q ss_pred CCccHHHHHHHHH
Q psy1083 59 GQISFEDFGALWK 71 (173)
Q Consensus 59 g~v~~~ef~~~~~ 71 (173)
|.+|-+|=+..+.
T Consensus 301 G~itReeal~~v~ 313 (343)
T TIGR03573 301 GRITREEAIELVK 313 (343)
T ss_pred CCCCHHHHHHHHH
Confidence 5555555444443
No 227
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=24.91 E-value=1.2e+02 Score=15.85 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=20.9
Q ss_pred CCCccc-HHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy1083 87 NSGNID-KLELKTALGTFGYRLGDNTVDILMKKF 119 (173)
Q Consensus 87 ~~g~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 119 (173)
..|.|+ ..++-+.|...|..+++..++.+++..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 346665 334444555567788888888777654
No 228
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=24.62 E-value=1.5e+02 Score=16.98 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHhh
Q psy1083 64 EDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTF----GYRLGDNTVDILMKKF 119 (173)
Q Consensus 64 ~ef~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 119 (173)
.+...+-..+..+..+...++....--+-..+++.++..+ |...+++.++.+|+.|
T Consensus 13 Rq~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 13 RQRQLLEQALEHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 3333333445556666666654433445566777777764 6667778888888765
No 229
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=24.50 E-value=96 Score=14.74 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=9.9
Q ss_pred CCCccHHHHHHHHHHHHH
Q psy1083 58 TGQISFEDFGALWKYVTD 75 (173)
Q Consensus 58 ~g~v~~~ef~~~~~~~~~ 75 (173)
.|.|+++++.........
T Consensus 2 ~~~i~~~~~~d~a~rv~~ 19 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNN 19 (33)
T ss_pred CceecHHHHHHHHHHHHH
Confidence 355666666665554433
No 230
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=24.05 E-value=61 Score=17.37 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=22.7
Q ss_pred HHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHh
Q psy1083 12 IFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGM 52 (173)
Q Consensus 12 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~ 52 (173)
+|..+...+++.+|.+|+..-+.+ .++-....++++++.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~~--~~p~~~~~L~RimR~ 49 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLPT--SNPSAPPMLDRIMRL 49 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTSTC--T-TTHHHHHHHHHHH
T ss_pred cHHHHHHcCCCCCCHHHHHHHcCC--CCcchHHHHHHHHHH
Confidence 455553334589999999887763 233345566666653
No 231
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=23.51 E-value=2.1e+02 Score=22.08 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=9.0
Q ss_pred CcceeHHHHHHHHHH
Q psy1083 124 KGTILFDDFIHCCVM 138 (173)
Q Consensus 124 ~~~i~~~ef~~~l~~ 138 (173)
.|.|+.+|=+..+..
T Consensus 300 ~G~itReeal~~v~~ 314 (343)
T TIGR03573 300 SGRITREEAIELVKE 314 (343)
T ss_pred cCCCCHHHHHHHHHH
Confidence 456666666666554
No 232
>KOG4403|consensus
Probab=23.44 E-value=3.9e+02 Score=21.71 Aligned_cols=61 Identities=26% Similarity=0.363 Sum_probs=38.3
Q ss_pred hHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q psy1083 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWK 71 (173)
Q Consensus 7 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 71 (173)
+.++.+-+.+|.|++|-|+.+|=..+++.-....-+...-.. .|.. .+..||.++.-..|.
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~---~fH~-dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSE---KFHG-DDKHITVEDLWEAWK 128 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhh---hccC-CccceeHHHHHHHHH
Confidence 457778888898999999999988888752222212222222 2222 456788888666553
No 233
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=23.40 E-value=2.2e+02 Score=23.61 Aligned_cols=45 Identities=13% Similarity=0.371 Sum_probs=34.9
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC
Q psy1083 78 SCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHH 122 (173)
Q Consensus 78 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~ 122 (173)
.+-...+..|.|.++.+|..++|..+...-...+++++++....+
T Consensus 459 Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~n 503 (548)
T PF02459_consen 459 DLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALN 503 (548)
T ss_pred HHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcc
Confidence 344455667888899999999999998777667778888877654
No 234
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=23.32 E-value=2.8e+02 Score=19.77 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=26.0
Q ss_pred CcceeHHHHHHHHHH------------------HHHHHHHhhccCCCCCCceee
Q psy1083 124 KGTILFDDFIHCCVM------------------LNLLTTSFSQHDEDKDGVVTL 159 (173)
Q Consensus 124 ~~~i~~~ef~~~l~~------------------~~~~~~~f~~~d~~~~g~i~~ 159 (173)
.|.++|..++.-+.. -+.+......||++++|.|-+
T Consensus 175 ~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~I 228 (246)
T PF10897_consen 175 KGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIKI 228 (246)
T ss_pred cCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCceee
Confidence 456666666666543 356777788999999999865
No 235
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=22.27 E-value=2.2e+02 Score=19.76 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=33.3
Q ss_pred CCCCChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCC
Q psy1083 1 MAMPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDK 55 (173)
Q Consensus 1 ~~m~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~ 55 (173)
|.|...+..+++...+ ...|.++..++.+.+.- +...+++=+..+..
T Consensus 1 ~~m~~~~R~~~Il~~l--~~~~~~~~~~La~~~~v------S~~TiRRDl~~L~~ 47 (185)
T PRK04424 1 MKLSKKERQKALQELI--EENPFITDEELAEKFGV------SIQTIRLDRMELGI 47 (185)
T ss_pred CCCCHHHHHHHHHHHH--HHCCCEEHHHHHHHHCc------CHHHHHHHHHHHhc
Confidence 5676666777777777 34788999998887754 66667776666533
No 236
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=22.17 E-value=2.6e+02 Score=20.00 Aligned_cols=60 Identities=22% Similarity=0.214 Sum_probs=39.4
Q ss_pred HHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCC-CccHHHHHHHHH
Q psy1083 10 RDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTG-QISFEDFGALWK 71 (173)
Q Consensus 10 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g-~v~~~ef~~~~~ 71 (173)
.+.|-.. +++|.|+-.++...+.+.....-++..+..+.+.+...+.+ .++-+=|.++.+
T Consensus 126 ~~~fL~~--E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas 186 (203)
T PF11207_consen 126 LRRFLQL--EGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLAS 186 (203)
T ss_pred HHHHHHH--cCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 3344444 67888888888888887433444556677777777665555 777776666554
No 237
>KOG4519|consensus
Probab=21.75 E-value=2.6e+02 Score=21.83 Aligned_cols=57 Identities=7% Similarity=0.058 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q psy1083 44 ETVRLMIGMFDKNNTGQISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTAL 100 (173)
Q Consensus 44 ~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 100 (173)
+...+++..++......--+.|..+.-..+..++..|+......+--|..+-=.++|
T Consensus 333 d~~~~v~eSl~~~~~~~~~~~e~~E~r~a~~~IRr~~r~it~ea~vdIEP~~QT~lL 389 (459)
T KOG4519|consen 333 DVYLRVIESLSVLTINEAIIKELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLL 389 (459)
T ss_pred hHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhHh
Confidence 445566666665554555556655555566667777777765555555444333343
No 238
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=21.61 E-value=68 Score=17.95 Aligned_cols=31 Identities=10% Similarity=-0.016 Sum_probs=12.6
Q ss_pred cceeHHHHHHHHhcCCCCCCCHHHHHHHHHh
Q psy1083 22 GLISTNELQMALSNGTWKPFNAETVRLMIGM 52 (173)
Q Consensus 22 g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~ 52 (173)
..++.+|...++..+.....++.++..++-.
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~a 43 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIAAFLMA 43 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4555555555555544444444444444433
No 239
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.36 E-value=86 Score=17.91 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=13.8
Q ss_pred CCCCChhH----HHHHHHhhCCCCCcceeHHHH
Q psy1083 1 MAMPPPEF----LRDIFQRVDRDKSGLISTNEL 29 (173)
Q Consensus 1 ~~m~~~~~----~~~~F~~~D~~~~g~i~~~e~ 29 (173)
|+||+.+- +.++=.++.-=+-|+++.+++
T Consensus 1 m~~~n~Enl~fmi~eI~~KLnmvN~gvl~~e~~ 33 (71)
T COG4840 1 MAMPNEENLDFMIEEIREKLNMVNVGVLDPEKY 33 (71)
T ss_pred CCCcchhhHHHHHHHHHHHHhhhhhhccCHHhc
Confidence 67777773 333333332224455544443
No 240
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=21.06 E-value=1e+02 Score=18.39 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=22.1
Q ss_pred cceeHHHHHHHHHHH--HHHHHHhhccCCCCCCc
Q psy1083 125 GTILFDDFIHCCVML--NLLTTSFSQHDEDKDGV 156 (173)
Q Consensus 125 ~~i~~~ef~~~l~~~--~~~~~~f~~~d~~~~g~ 156 (173)
..++|.+.+..+... .....+|+.-|.+||..
T Consensus 21 ~~L~F~DvL~~I~~vlp~aT~tAFeYEDE~gDRI 54 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRI 54 (91)
T ss_pred ccccHHHHHHHHHHhcccccccceeeccccCCee
Confidence 457888887777653 33556788888888754
No 241
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=20.94 E-value=99 Score=20.35 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=41.2
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHH-cCCCC-CHHHHHHHHHhhCCCCCcceeHHHHHHH
Q psy1083 58 TGQISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGT-FGYRL-GDNTVDILMKKFDHHGKGTILFDDFIHC 135 (173)
Q Consensus 58 ~g~v~~~ef~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~i~~~ef~~~ 135 (173)
+|.||..+|+..+...+.++..|-.- .. .. .-+....+. +|-.+ +..|+.......... .+..++..
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f~~~--~~--~~--R~iEl~~khlLGR~p~~~~Ei~~~~~i~a~~-----G~~a~Id~ 110 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRFFEP--NS--NY--RFIELAFKHLLGRAPYNQAEISAYSQILASQ-----GFEAFIDA 110 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHHTTT--S---HH--HHHHHHHHHHCSS--SSHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHHHHccc--cc--ch--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----ChHHHHHH
Confidence 58999999999998777666555331 11 11 111122222 35433 467777666665432 14455555
Q ss_pred HHHHHHHHHHh
Q psy1083 136 CVMLNLLTTSF 146 (173)
Q Consensus 136 l~~~~~~~~~f 146 (173)
+....+..+.|
T Consensus 111 lldS~EY~~~F 121 (131)
T PF00427_consen 111 LLDSEEYLEAF 121 (131)
T ss_dssp HHTSHHHHHHT
T ss_pred HHCcHHHHHHc
Confidence 55555555554
No 242
>KOG1954|consensus
Probab=20.66 E-value=2.5e+02 Score=22.48 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=40.6
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHH
Q psy1083 76 WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134 (173)
Q Consensus 76 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~ 134 (173)
+.++|..+. .-+|+|+-..-+.-+.. ..+..+-+-.+.+..|.|.+|.++-+||.-
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 566777665 45788887776665544 336666777888888889999999988853
No 243
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=20.52 E-value=2.3e+02 Score=17.94 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=9.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH
Q psy1083 94 LELKTALGTFGYRLGDNTVDILM 116 (173)
Q Consensus 94 ~e~~~~l~~~~~~~~~~~~~~~~ 116 (173)
+|++.++......+++++++.++
T Consensus 82 dElrai~~~~~~~~~~e~l~~IL 104 (112)
T PRK14981 82 DELRAIFAKERYTLSPEELDEIL 104 (112)
T ss_pred HHHHHHHHHhccCCCHHHHHHHH
Confidence 44444444443344444444443
No 244
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=20.51 E-value=2e+02 Score=17.24 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=19.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q psy1083 91 IDKLELKTALGTFGYRLGDNTVDILMKKF 119 (173)
Q Consensus 91 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 119 (173)
|+.+++..+.+-....++++++..+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45667777776667777777776655544
No 245
>KOG3077|consensus
Probab=20.40 E-value=3.7e+02 Score=20.05 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=40.1
Q ss_pred HHHHHh-hhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH
Q psy1083 76 WQSCFK-SFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138 (173)
Q Consensus 76 ~~~~f~-~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~l~~ 138 (173)
+...|. ..|++.+..|..+-+.+++..+|..+.+-.+--+.-.++...-+..+.++|+.-+..
T Consensus 66 l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 66 LEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTA 129 (260)
T ss_pred HHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 444454 446555578888889999998885554333333333344445677888888887654
No 246
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=20.39 E-value=2.1e+02 Score=17.18 Aligned_cols=9 Identities=0% Similarity=0.158 Sum_probs=3.7
Q ss_pred ccHHHHHHH
Q psy1083 61 ISFEDFGAL 69 (173)
Q Consensus 61 v~~~ef~~~ 69 (173)
+|-.+...+
T Consensus 40 ~T~~Qv~~i 48 (95)
T PF14771_consen 40 FTCAQVKQI 48 (95)
T ss_pred eeHHHHHHH
Confidence 444444433
No 247
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=20.29 E-value=1.5e+02 Score=17.53 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH
Q psy1083 95 ELKTALGTFGYRLGDNTVDILMK 117 (173)
Q Consensus 95 e~~~~l~~~~~~~~~~~~~~~~~ 117 (173)
|+..+|+.+|..+++++...+-.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 56667888899998888665433
No 248
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.27 E-value=2.2e+02 Score=17.41 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=53.2
Q ss_pred ChhHHHHHHHhhCCCCCcceeHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHhhhC
Q psy1083 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVTDWQSCFKSFD 84 (173)
Q Consensus 5 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~f~~~D 84 (173)
+.+.+++.|..+. ..+...+.+.+.+.+ ++++..+..+-... + + +.++-.. +...++.
T Consensus 2 ~~~~l~~~f~~i~----~~V~~~~Wk~laR~L---GLse~~I~~i~~~~-~---~--~~eq~~q-------mL~~W~~-- 59 (96)
T cd08315 2 PQETLRRSFDHFI----KEVPFDSWNRLMRQL---GLSENEIDVAKANE-R---V--TREQLYQ-------MLLTWVN-- 59 (96)
T ss_pred cHhHHHHHHHHHH----HHCCHHHHHHHHHHc---CCCHHHHHHHHHHC-C---C--CHHHHHH-------HHHHHHH--
Confidence 3455888888872 346677888887772 46777777765543 1 1 1222111 1222222
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q psy1083 85 KDNSGNIDKLELKTALGTFGYRLGDNTVDILM 116 (173)
Q Consensus 85 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 116 (173)
.....=+...+.+.|..++.....+.++..+
T Consensus 60 -~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 60 -KTGRKASVNTLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred -hhCCCcHHHHHHHHHHHcccccHHHHHHHHH
Confidence 1222445788999999999888888777554
No 249
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=20.12 E-value=1.5e+02 Score=15.30 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCcceeHHHHHH
Q psy1083 94 LELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134 (173)
Q Consensus 94 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~ 134 (173)
+|....|..+| .++.++..++..... ...++-++.++
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 56677777777 777788877777753 23444555444
Done!