RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1083
(173 letters)
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 216 bits (552), Expect = 5e-73
Identities = 96/170 (56%), Positives = 126/170 (74%)
Query: 2 AMPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQI 61
A+P FL ++FQRVD+D+SG+IS ELQ ALSNGTW PFN TVR +I MFD+ N +
Sbjct: 2 ALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGV 61
Query: 62 SFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
+F +F +WKY+TDWQ+ F+++D+DNSG IDK ELK AL FGYRL D DIL++KFD
Sbjct: 62 NFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDR 121
Query: 122 HGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSL 171
G+G I FDDFI C++L LT F ++D D+DG + + YEQ+LSMVFS+
Sbjct: 122 QGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 171
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 201 bits (513), Expect = 6e-67
Identities = 53/169 (31%), Positives = 95/169 (56%), Gaps = 1/169 (0%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQIS 62
M + L + F+ VD D SG IS EL ALS+ PF+ T ++ M+DKN++G+I+
Sbjct: 23 MNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGV-PFSLATTEKLLHMYDKNHSGEIT 81
Query: 63 FEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHH 122
F++F L ++ + F+ D G +D E++ AL + GY++ + T LM+KFD
Sbjct: 82 FDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQ 141
Query: 123 GKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSL 171
+G++ FDD++ + + + F+ +D ++ G VT ++ F+ S+
Sbjct: 142 RRGSLGFDDYVELSIFVCRVRNVFAFYDRERTGQVTFTFDTFIGGSVSI 190
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 200 bits (509), Expect = 7e-66
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 9/177 (5%)
Query: 2 AMPPPEF--LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTG 59
+P ++ + F VDRD+SG + NEL M G + +T M+ +FD + G
Sbjct: 44 TIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGI-RLSPQTALRMMRIFDTDFNG 102
Query: 60 QISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKF 119
ISF +F A++K++ + F + SG ++ E+ AL G+ + T +L + F
Sbjct: 103 HISFYEFMAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLF 162
Query: 120 DHHGKGTILFDDFIHCCVMLNLLTTSFSQ-----HDEDKDGVVTLHYEQFLSMVFSL 171
G + +I C +++ + + + +FL +V SL
Sbjct: 163 A-RGMAFCDLNCWIAICAFAAQTRSAYQMIFMNPYYGPMKPFNPMEFGKFLDVVTSL 218
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 184 bits (468), Expect = 4e-60
Identities = 66/170 (38%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
Query: 6 PEFLRDIFQRVDRDKSGLISTNELQMALS----NGTWKPFNAETVRLMIGMFDKNNTGQI 61
+ L F + G I +ELQ L+ G +KPFN ET RLM+ M D++ +G +
Sbjct: 32 QDPLYGYFAA-VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTM 90
Query: 62 SFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
F +F LW + W+ F SFD D SG +D EL+ AL T G+RL V+ + K++
Sbjct: 91 GFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS- 149
Query: 122 HGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSL 171
G I FDD+I CCV L LT SF + D + GVV Y+ F+ V S+
Sbjct: 150 -TNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 198
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 177 bits (451), Expect = 7e-58
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 7/167 (4%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALS----NGTWKPFNAETVRLMIGMFDKNNTGQISFE 64
+ F V + G + ELQ L+ NGT+ PF+ ET R+MI M D+++TG++ F
Sbjct: 2 VYTYFSAV-AGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFN 60
Query: 65 DFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGK 124
F LW + W+ F + D+D SG ++ EL+ A+G GYRL T+ ++K++
Sbjct: 61 AFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYS--KN 118
Query: 125 GTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSL 171
G I FDD++ CCV L LT F + D + G Y+ FL ++
Sbjct: 119 GRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI 165
Score = 61.6 bits (150), Expect = 1e-12
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
++ F VD+D SG + +EL+ A+ ++ + +T+ ++ + KN G+I F+D+
Sbjct: 70 NAWKENFMTVDQDGSGTVEHHELRQAIGLMGYR-LSPQTLTTIVKRYSKN--GRIFFDDY 126
Query: 67 GALWKYVTDWQSCFKSFDKDNSGNI 91
A + F+ D G+
Sbjct: 127 VACCVKLRALTDFFRKRDHLQQGSA 151
Score = 26.6 bits (59), Expect = 3.6
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 7 EFLRDIFQRVDRDKSGLISTNE---LQMALS 34
L D F++ D + G + LQ ++
Sbjct: 134 RALTDFFRKRDHLQQGSANFIYDDFLQGTMA 164
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 174 bits (443), Expect = 1e-56
Identities = 66/169 (39%), Positives = 94/169 (55%), Gaps = 7/169 (4%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALS----NGTWKPFNAETVRLMIGMFDKNNTGQIS 62
+ L F V + G I +ELQ L+ G +KPFN ET RLM+ M D++ +G +
Sbjct: 2 DPLYGYFASV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMG 60
Query: 63 FEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHH 122
F +F LW + W+ F SFD D SG +D EL+ AL T G+RL TV+ + K++
Sbjct: 61 FNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYS-- 118
Query: 123 GKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSL 171
G I FDD+I CCV L LT SF + D + G+V Y+ F+ V ++
Sbjct: 119 TSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVMTV 167
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 171 bits (434), Expect = 4e-55
Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 9/169 (5%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWK-------PFNAETVRLMIGMFDKNNTG 59
R +F ++ +S EL L+ + F +T R M+ + D + TG
Sbjct: 4 RQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 62
Query: 60 QISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKF 119
++ FE+F LW + WQ+ +K FD D SG I EL A G+ L ++ ++++++
Sbjct: 63 KLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRY 122
Query: 120 DHHGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMV 168
G + FD+FI C V L+ + +F D+D G + ++ +++L +
Sbjct: 123 S-DEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLT 170
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 180 bits (458), Expect = 2e-53
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWK-------PFNAETVRLMIGMFDKNNTGQI 61
R +F ++ +S EL L+ + F +T R M+ + D + TG++
Sbjct: 733 FRKLFVQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKL 791
Query: 62 SFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
FE+F LW + WQ +K F+ D SG I EL A G+ L + ++++++
Sbjct: 792 GFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYS- 850
Query: 122 HGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMVFS 170
G + FD+FI C V L+ + +F D++ G + ++ +++L +
Sbjct: 851 DETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVNIQEWLQLTMY 899
Score = 148 bits (374), Expect = 4e-42
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKP-------FNAETVRLMIGMFDK 55
+ + +F ++ D IS ELQ L+ K F+ E+ R M+ + D+
Sbjct: 530 EEIDDNFKTLFSKLAGDD-MEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDR 588
Query: 56 NNTGQISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDIL 115
+ G++ +F LW + ++ + F+ FD D SG++ E++ A+ G++L ++
Sbjct: 589 DGNGKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVI 648
Query: 116 MKKFDHHGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSLKM 173
+ +F + I FD+F+ C V L +L F Q D + G + L +LS K+
Sbjct: 649 VARFA-DDELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDLISWLSFSVLGKL 705
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 160 bits (405), Expect = 2e-46
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 8/152 (5%)
Query: 24 ISTNELQMALSNGTWK-------PFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVTDW 76
IS ELQ L K F+ ET ++M+ M D++ +G++ ++F LW + +
Sbjct: 548 ISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKY 607
Query: 77 QSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCC 136
Q ++ D D SG ++ E++ AL G++L +++ +F + I FD+F+ C
Sbjct: 608 QKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCL 666
Query: 137 VMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMV 168
V L +L F Q D + G + L +LS
Sbjct: 667 VRLEILFKIFKQLDPENTGTIQLDLISWLSFS 698
Score = 52.1 bits (124), Expect = 2e-08
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 10 RDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGAL 69
+ I++ +D D+SG +++ E++ AL +K + ++++ F + I F++F
Sbjct: 608 QKIYREIDVDRSGTMNSYEMRKALEEAGFK-LPCQLHQVIVARFADDE-LIIDFDNFVRC 665
Query: 70 WKYVTDWQSCFKSFDKDNSGNI 91
+ FK D +N+G I
Sbjct: 666 LVRLEILFKIFKQLDPENTGTI 687
Score = 37.1 bits (85), Expect = 0.002
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Query: 70 WKYVTDWQSCFKSFDKDNSGNIDKLELKTAL--------GTFGYRLGDNTVDILMKKFDH 121
++ F +++ I EL+T L T I++ D
Sbjct: 528 EDIGDGFRRLFAQLAGEDA-EISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDE 586
Query: 122 HGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLH 160
G G + +F + + + D D+ G + +
Sbjct: 587 DGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSY 625
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 140 bits (355), Expect = 3e-43
Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 13/175 (7%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWK-----PFNAETVRLMIGMFDKNN 57
M + + I +LQ L+ F+ + R ++ + +
Sbjct: 1 MGSSHHHHHHSSGL-VPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKV 59
Query: 58 TGQISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTAL----GTFGYRLGDNTVD 113
G++ E+F LWK + +Q F+ + G + +L A+ G + +
Sbjct: 60 NGRLDQEEFARLWKRLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLH 118
Query: 114 ILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMV 168
++ ++ G + F + + L + +F +D G + L +++S+V
Sbjct: 119 LVTLRYS-DSVGRVSFPSLVCFLMRLEAMAKTFRNLSKDGKG-LYLTEMEWMSLV 171
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 138 bits (350), Expect = 9e-41
Identities = 28/154 (18%), Positives = 63/154 (40%), Gaps = 2/154 (1%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
LR +F SG S +L+ L+ ++ + M + + G++S+
Sbjct: 122 NILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTI-PEGPLKKLFVMVENDTKGRMSYITL 180
Query: 67 GALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGT 126
A+ + + F+ D +++G + + E + G+ + D L + D
Sbjct: 181 VAVANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDK-KSVQDALFRYADEDESDD 239
Query: 127 ILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLH 160
+ F +++H + L +L ++ D DK G ++
Sbjct: 240 VGFSEYVHLGLCLLVLRILYAFADFDKSGQLSKE 273
Score = 104 bits (261), Expect = 9e-28
Identities = 18/139 (12%), Positives = 48/139 (34%), Gaps = 3/139 (2%)
Query: 2 AMPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQI 61
L F+++D + +G +S E + + + D++ + +
Sbjct: 183 VANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFD--KKSVQDALFRYADEDESDDV 240
Query: 62 SFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYR-LGDNTVDILMKKFD 120
F ++ L + + + D D SG + K E++ L + D
Sbjct: 241 GFSEYVHLGLCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVD 300
Query: 121 HHGKGTILFDDFIHCCVML 139
++ + +F+ +++
Sbjct: 301 VDDSKSLSYQEFVMLVLLM 319
Score = 64.1 bits (156), Expect = 8e-13
Identities = 19/168 (11%), Positives = 39/168 (23%), Gaps = 36/168 (21%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRL--MIGMFDKNNTGQISFEDF 66
+ D+ E AE RL ++ + + +G
Sbjct: 53 QKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRPS 112
Query: 67 GALWKY--VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGK 124
+ + F S SG +LK L + + + + L ++ K
Sbjct: 113 KPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTK 172
Query: 125 GTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSLK 172
G + Y +++ L
Sbjct: 173 GRM--------------------------------SYITLVAVANDLA 188
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 83.3 bits (207), Expect = 6e-21
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
L+++F +D DKSG I+ EL+ L +E + ++ D +N+G I +++F A
Sbjct: 29 LKEMFNMIDADKSGQITFEELKAGLKRVGANLKESE-ILDLMQAADVDNSGTIDYKEFIA 87
Query: 69 LWKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHH 122
++ + F FDKD SG I EL+ A FG + D ++ LM+ D
Sbjct: 88 ATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG--VEDVRIEELMRDVDQD 145
Query: 123 GKGTILFDDFI 133
G I +++F+
Sbjct: 146 NDGRIDYNEFV 156
Score = 58.7 bits (143), Expect = 1e-11
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139
F D D SG I ELK L G L ++ + LM+ D GTI + +FI + L
Sbjct: 33 FNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHL 92
Query: 140 NLLTT------SFSQHDEDKDGVVTL 159
N + +F+ D+D G +T
Sbjct: 93 NKIEREDHLFAAFTYFDKDGSGYITP 118
Score = 48.3 bits (116), Expect = 8e-08
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+ L F D+D SG I+ +ELQ A + ++ D++N G+I + +F
Sbjct: 99 DHLFAAFTYFDKDGSGYITPDELQQACEE---FGVEDVRIEELMRDVDQDNDGRIDYNEF 155
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 82.6 bits (205), Expect = 7e-21
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 12/137 (8%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+DIF D+ G I+ + L L + P N ++ + ++ +
Sbjct: 6 NKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITG 65
Query: 69 L------------WKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILM 116
L D+ F+ FDK+++G + +L+ L G +L D VD L+
Sbjct: 66 LIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELL 125
Query: 117 KKFDHHGKGTILFDDFI 133
K + G I + FI
Sbjct: 126 KGVEVDSNGEIDYKKFI 142
Score = 44.5 bits (106), Expect = 1e-06
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 2 AMPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQI 61
E FQ D++ +G +S +L+ L+ K V ++ + ++ G+I
Sbjct: 78 TKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEK-LTDAEVDELLKGVEVDSNGEI 136
Query: 62 SFEDF 66
++ F
Sbjct: 137 DYKKF 141
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 81.7 bits (203), Expect = 1e-20
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+R+ F D D +G I EL++A+ ++P E ++ MI DK TG+++F DF
Sbjct: 8 IREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEE-IKKMISEIDKEGTGKMNFGDFLT 66
Query: 69 L-WKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
+ + +++ + FK FD D +G I LK G L D + ++ + D
Sbjct: 67 VMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADR 126
Query: 122 HGKGTILFDDFI 133
G G + +F+
Sbjct: 127 DGDGEVSEQEFL 138
Score = 55.9 bits (136), Expect = 8e-11
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 79 CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
F FD D +G ID ELK A+ G+ + ++ + D G G + F DF+
Sbjct: 11 AFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLT 66
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 81.8 bits (203), Expect = 1e-20
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
++ F D+D G I+T EL + + P AE ++ MI D + G I F +F +
Sbjct: 12 FKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAE-LQDMINEVDADGNGTIDFPEFLS 70
Query: 69 L-WKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
L + + + S FK FD+D +G I EL+ + G +L D+ VD ++++ D
Sbjct: 71 LMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADI 130
Query: 122 HGKGTILFDDFIH 134
G G I +++F+
Sbjct: 131 DGDGHINYEEFVR 143
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 81.9 bits (203), Expect = 2e-20
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+ F D D G IST EL + P E + +I D++ +G I FE+F
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEE-LDAIIEEVDEDGSGTIDFEEFLV 80
Query: 69 LW--KYVTDWQS--------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKK 118
+ + D + CF+ FDK+ G ID EL L G + + ++ LMK
Sbjct: 81 MMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKD 140
Query: 119 FDHHGKGTILFDDFI 133
D + G I FD+F+
Sbjct: 141 SDKNNDGRIDFDEFL 155
Score = 58.4 bits (142), Expect = 2e-11
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 79 CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138
F FD D G+I EL T + G +D ++++ D G GTI F++F+ V
Sbjct: 25 AFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVR 84
Query: 139 LNLLTTSFSQHDE--------DKDG 155
+E DK+
Sbjct: 85 QMKEDAKGKSEEELANCFRIFDKNA 109
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 82.7 bits (205), Expect = 2e-20
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
L+++F+ +D D SG I+ +EL+ L + +E ++ ++ D + +G I + +F A
Sbjct: 12 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESE-IKDLMDAADIDKSGTIDYGEFIA 70
Query: 69 LWKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHH 122
++ + F FDKD SG I E++ A FG L D +D ++K+ D
Sbjct: 71 ATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQD 128
Query: 123 GKGTILFDDFI 133
G I + +F
Sbjct: 129 NDGQIDYGEFA 139
Score = 59.5 bits (145), Expect = 8e-12
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139
FK D DNSG I ELK L G L ++ + LM D GTI + +FI V L
Sbjct: 16 FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHL 75
Query: 140 NL------LTTSFSQHDEDKDGVVTL 159
N L ++FS D+D G +TL
Sbjct: 76 NKLEREENLVSAFSYFDKDGSGYITL 101
Score = 56.8 bits (138), Expect = 8e-11
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 19/106 (17%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSN-GTWKPFNAETVRLMIGMFDKNNTGQISFED 65
E L F D+D SG I+ +E+Q A + G + + MI D++N GQI + +
Sbjct: 82 ENLVSAFSYFDKDGSGYITLDEIQQACKDFG----LDDIHIDDMIKEIDQDNDGQIDYGE 137
Query: 66 FGALWKYVTDWQS--------------CFKSFDKDNSGNIDKLELK 97
F A+ + D ++ I+
Sbjct: 138 FAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFKH 183
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 81.9 bits (203), Expect = 2e-20
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+R+ F D D SG I EL++A+ ++P E ++ MI DK+ +G I FE+F
Sbjct: 30 IREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEE-IKKMISEIDKDGSGTIDFEEFLT 88
Query: 69 LW-KYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
+ + + S F+ FD DNSG I +L+ G L + + ++ + D
Sbjct: 89 MMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADR 148
Query: 122 HGKGTILFDDFI 133
+ I D+FI
Sbjct: 149 NDDNEIDEDEFI 160
Score = 55.3 bits (134), Expect = 2e-10
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
F FD D SG ID ELK A+ G+ + ++ + D G GTI F++F+
Sbjct: 34 FDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLT 88
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 81.0 bits (201), Expect = 5e-20
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 8/132 (6%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
++ F D+D G I+T EL + + P AE ++ MI D + G I F +F
Sbjct: 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE-LQDMINEVDADGNGTIDFPEFLT 71
Query: 69 L-WKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
+ + + D S F+ FDKD +G I EL+ + G +L D VD ++++ D
Sbjct: 72 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 131
Query: 122 HGKGTILFDDFI 133
G G + +++F+
Sbjct: 132 DGDGQVNYEEFV 143
Score = 54.1 bits (131), Expect = 8e-10
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 79 CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
F FDKD G I EL T + + G + + ++ + D G GTI F +F+
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 81.9 bits (202), Expect = 6e-20
Identities = 26/142 (18%), Positives = 53/142 (37%), Gaps = 16/142 (11%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMAL-SNGTWKPFNAETVRLMIGMF--------DKNN 57
+ ++F++ D++++G + +E+ F + + F N
Sbjct: 48 QRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLEN 107
Query: 58 TGQISFEDFGAL---WKYVTDWQSC---FKSFDKDNSGNIDKLELKTALGTFG-YRLGDN 110
G F +F Y+ D+ F D + +D+ E K A+ +
Sbjct: 108 KGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVE 167
Query: 111 TVDILMKKFDHHGKGTILFDDF 132
L K+ D +G G++ FD+F
Sbjct: 168 DPAALFKELDKNGTGSVTFDEF 189
Score = 44.5 bits (105), Expect = 3e-06
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 16/96 (16%)
Query: 80 FKSFDKDNSGNIDKLELKTALG-TFGYRLGDNTVDILMKK---------FDHHGKGTILF 129
FK FDK+ +G + E+ + + V + K+ KG+ F
Sbjct: 54 FKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDF 113
Query: 130 DDFIHCCVMLNLLTTS------FSQHDEDKDGVVTL 159
+F+ +ML + F + D + +V
Sbjct: 114 VEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDE 149
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 84.7 bits (210), Expect = 7e-20
Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 19/144 (13%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGM-------------FDK 55
L +IF+++D + G++ +EL + D
Sbjct: 333 LTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDM 392
Query: 56 NNTGQISFEDFGA----LWKYVTD--WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGD 109
+ +G I + +F A ++ + FK FDKD SG I EL +
Sbjct: 393 DGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQM 452
Query: 110 NTVDILMKKFDHHGKGTILFDDFI 133
++ ++++ D++ G + F++F+
Sbjct: 453 EELESIIEQVDNNKDGEVDFNEFV 476
Score = 51.2 bits (123), Expect = 3e-08
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
E + F+ D+D SG IST EL S E + +I D N G++ F +F
Sbjct: 417 ERMERAFKMFDKDGSGKISTKELFKLFSQAD-SSIQMEELESIIEQVDNNKDGEVDFNEF 475
Query: 67 GALWKYVTDWQ 77
+ + +
Sbjct: 476 VEMLQNFVRNE 486
Score = 49.3 bits (118), Expect = 1e-07
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 20/99 (20%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTF--------------GYRLGDNTVDILMKKFDHHGKG 125
F+ D +N G +D+ EL F ++ +D LM D G G
Sbjct: 337 FRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSG 396
Query: 126 TILFDDFIHCCVMLNL------LTTSFSQHDEDKDGVVT 158
+I + +FI + + + +F D+D G ++
Sbjct: 397 SIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKIS 435
Score = 44.3 bits (105), Expect = 6e-06
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+ + +D D SG I +E + + + E + MFDK+ +G+IS ++
Sbjct: 383 IDSLMPLLDMDGSGSIEYSEFIASAID-RTILLSRERMERAFKMFDKDGSGKISTKELFK 441
Query: 69 LWKYV------TDWQSCFKSFDKDNSGNIDKLELKTAL 100
L+ + +S + D + G +D E L
Sbjct: 442 LFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEML 479
Score = 27.0 bits (60), Expect = 3.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 4 PPPEFLRDIFQRVDRDKSGLISTNELQMALSNGT 37
E L I ++VD +K G + NE L N
Sbjct: 450 IQMEELESIIEQVDNNKDGEVDFNEFVEMLQNFV 483
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 79.9 bits (198), Expect = 1e-19
Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+ + F D + G + +EL++A+ ++ E + +I +D + ++DF
Sbjct: 25 IYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKRE-ILDLIDEYDSEGRHLMKYDDFYI 83
Query: 69 LW-KYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
+ + + F+ FD D++G I L+ G L D + ++++FD
Sbjct: 84 VMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDL 143
Query: 122 HGKGTILFDDFI 133
G G I ++FI
Sbjct: 144 DGDGEINENEFI 155
Score = 55.6 bits (135), Expect = 2e-10
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
F FD +N G +D ELK A+ G+ L + L+ ++D G+ + +DDF
Sbjct: 29 FSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYI 83
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 80.3 bits (199), Expect = 2e-19
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
LR+IF +D D SG +S+ E+ L ++ + + ++ D N +GQI + DF A
Sbjct: 59 LRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPD-IHQVLRDIDSNASGQIHYTDFLA 117
Query: 69 ----LWKYVTD--WQSCFKSFDKDNSGNIDKLELKTALGTF--GYRLGDNTVDILMKKFD 120
Y+ FK FD D +G I ELK G L D +D L+++ D
Sbjct: 118 ATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVD 177
Query: 121 HHGKGTILFDDFI 133
+G G I F +F+
Sbjct: 178 LNGDGEIDFHEFM 190
Score = 62.2 bits (152), Expect = 9e-13
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139
F + D DNSG + E+ L GY+ + +++ D + G I + DF+ +
Sbjct: 63 FIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDK 122
Query: 140 NLLTTS------FSQHDEDKDGVVTL 159
F D D +G +++
Sbjct: 123 QTYLKKEVCLIPFKFFDIDGNGKISV 148
Score = 51.8 bits (125), Expect = 7e-09
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALS-NGTWKPFNAETVRLMIGMFDKNNTGQISFED 65
E F+ D D +G IS EL+ + P + + ++ D N G+I F +
Sbjct: 129 EVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHE 188
Query: 66 F 66
F
Sbjct: 189 F 189
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 78.7 bits (195), Expect = 2e-19
Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 14/134 (10%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+F+ +D + G +S E++ +S ++L+ D + G+I +F
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQL-LQLIFKSIDADGNGEIDQNEFAK 60
Query: 69 LWKYVTDWQSC---------FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKF 119
+ + +K D D G + K E+ + + G V + K
Sbjct: 61 FYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFK----KHGIEKVAEQVMKA 116
Query: 120 DHHGKGTILFDDFI 133
D +G G I ++F+
Sbjct: 117 DANGDGYITLEEFL 130
Score = 57.2 bits (139), Expect = 3e-11
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 11/85 (12%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139
FK D + G + E+K + + + ++ K D G G I ++F
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK--FYG 63
Query: 140 NLLTTSFSQHDE---------DKDG 155
++ S D DG
Sbjct: 64 SIQGQDLSDDKIGLKVLYKLMDVDG 88
Score = 52.1 bits (126), Expect = 2e-09
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
L+ +++ +D D G ++ E+ E V + D N G I+ E+F
Sbjct: 75 IGLKVLYKLMDVDGDGKLTKEEVTSFFKK-----HGIEKVAEQVMKADANGDGYITLEEF 129
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 81.7 bits (202), Expect = 8e-19
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 15/138 (10%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAET-------VRLMIGMFDKNNTGQI 61
L DIF+ +D++ G + EL S + + V ++G D + G I
Sbjct: 348 LTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYI 407
Query: 62 SFEDFGA----LWKYVTD--WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDIL 115
+ +F ++ +S F+ FD+D +G I EL + G L T +
Sbjct: 408 DYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDH--LESKTWKEM 465
Query: 116 MKKFDHHGKGTILFDDFI 133
+ D + G + F++F
Sbjct: 466 ISGIDSNNDGDVDFEEFC 483
Score = 51.6 bits (124), Expect = 2e-08
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+ L FQ+ D+D +G IS +EL ++T + MI D NN G + FE+F
Sbjct: 426 DKLESAFQKFDQDGNGKISVDELASVFGLD---HLESKTWKEMISGIDSNNDGDVDFEEF 482
Query: 67 GAL 69
+
Sbjct: 483 CKM 485
Score = 51.2 bits (123), Expect = 2e-08
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFG--------YRLGDNTVDILMKKFDHHGKGTILFDD 131
F+ DK+ G +D+ EL ++ VD ++ D G I + +
Sbjct: 352 FRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSE 411
Query: 132 FI----HCCVMLNL--LTTSFSQHDEDKDGVVTLH 160
F+ +L+ L ++F + D+D +G +++
Sbjct: 412 FVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVD 446
Score = 44.7 bits (106), Expect = 5e-06
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAET-VRLMIGMFDKNNTGQISFED-- 65
+ I D D++G I +E + K ++ + FD++ G+IS ++
Sbjct: 392 VDAILGAADFDRNGYIDYSEFVTVAMD--RKSLLSKDKLESAFQKFDQDGNGKISVDELA 449
Query: 66 --FGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTAL 100
FG W+ D +N G++D E +
Sbjct: 450 SVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMI 486
Score = 25.8 bits (57), Expect = 9.0
Identities = 3/24 (12%), Positives = 10/24 (41%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNE 28
+ +++ +D + G + E
Sbjct: 458 ESKTWKEMISGIDSNNDGDVDFEE 481
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 81.3 bits (201), Expect = 1e-18
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 18/141 (12%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAET----------VRLMIGMFDKNNT 58
L IF ++D++ G + EL + V ++ D +
Sbjct: 337 LTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKN 396
Query: 59 GQISFEDFGA----LWKYVTD--WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTV 112
G I + +F ++ + F+ FD DNSG I EL T G + T
Sbjct: 397 GYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSD--VDSETW 454
Query: 113 DILMKKFDHHGKGTILFDDFI 133
++ + D + G + FD+F
Sbjct: 455 KSVLSEVDKNNDGEVDFDEFQ 475
Score = 53.9 bits (130), Expect = 3e-09
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
E L F+ D D SG IS+ EL ++ET + ++ DKNN G++ F++F
Sbjct: 418 ERLERAFRMFDSDNSGKISSTELATIFGVS---DVDSETWKSVLSEVDKNNDGEVDFDEF 474
Query: 67 GALWKYVTD 75
+ +
Sbjct: 475 QQMLLKLCG 483
Score = 50.5 bits (121), Expect = 5e-08
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 17/98 (17%)
Query: 80 FKSFDKDNSGNIDKLELKTAL-----------GTFGYRLGDNTVDILMKKFDHHGKGTIL 128
F DK+ G +D+ EL ++ VD ++ D G I
Sbjct: 341 FHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIE 400
Query: 129 FDDFIHCCVMLNLLTT------SFSQHDEDKDGVVTLH 160
+ +F+ + L + +F D D G ++
Sbjct: 401 YSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISST 438
Score = 28.1 bits (63), Expect = 1.8
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGT 37
E + + VD++ G + +E Q L
Sbjct: 450 DSETWKSVLSEVDKNNDGEVDFDEFQQMLLKLC 482
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 81.1 bits (200), Expect = 1e-18
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
++ F D+D G I+T EL + + P AE ++ MI D + G I F +F
Sbjct: 314 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE-LQDMINEVDADGNGTIDFPEFLT 372
Query: 69 L-WKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
+ + + D S F+ FDKD +G I EL+ + G +L D VD ++++ D
Sbjct: 373 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 432
Query: 122 HGKGTILFDDFIH 134
G G + +++F+
Sbjct: 433 DGDGQVNYEEFVQ 445
Score = 68.0 bits (166), Expect = 4e-14
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 36/163 (22%)
Query: 6 PEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFED 65
PE +D + E++ + ++ I F++
Sbjct: 246 PEGYIQERTIFFKDDGNYKTRAEVKFE----------------GDTLVNRIELKGIDFKE 289
Query: 66 FGALWKY--------------VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT 111
G + + + +++ F FDKD G I EL T + + G +
Sbjct: 290 DGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE 349
Query: 112 VDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKD 154
+ ++ + D G GTI F +F L ++ D +++
Sbjct: 350 LQDMINEVDADGNGTIDFPEF------LTMMARKMKDTDSEEE 386
Score = 40.6 bits (95), Expect = 1e-04
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDI-----LMKKFDHHGKGTILFDDFIH 134
F KD+ + E+K T R+ +D ++ + L ++
Sbjct: 253 RTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNTRDQLTEE--- 309
Query: 135 CCVMLNLLTTSFSQHDEDKDGVVTLH 160
+ +FS D+D DG +T
Sbjct: 310 ---QIAEFKEAFSLFDKDGDGTITTK 332
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 80.9 bits (200), Expect = 1e-18
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 15/138 (10%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAET-------VRLMIGMFDKNNTGQI 61
L DIF+++D++ G + EL + V ++ D + G I
Sbjct: 357 LTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYI 416
Query: 62 SFEDF--GALWKYVTDWQ----SCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDIL 115
+ +F + K + + F FD D SG I K EL G + + T + +
Sbjct: 417 EYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGLTS--ISEKTWNDV 474
Query: 116 MKKFDHHGKGTILFDDFI 133
+ + D + I FD+F+
Sbjct: 475 LGEADQNKDNMIDFDEFV 492
Score = 57.0 bits (138), Expect = 3e-10
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
LR F D DKSG I+ EL + +T ++G D+N I F++F +
Sbjct: 437 LRRAFNLFDTDKSGKITKEELANLFGLT---SISEKTWNDVLGEADQNKDNMIDFDEFVS 493
Query: 69 LWKYVTDWQS 78
+ + D ++
Sbjct: 494 MMHKICDHKT 503
Score = 28.1 bits (63), Expect = 1.7
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGT-WKPF 41
+ D+ D++K +I +E + K F
Sbjct: 467 SEKTWNDVLGEADQNKDNMIDFDEFVSMMHKICDHKTF 504
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 76.3 bits (189), Expect = 1e-18
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
++ F D+D SG IS +EL + + P AE V ++ D + I F +F A
Sbjct: 13 FKEAFALFDKDNSGSISASELATVMRSLGLSPSEAE-VADLMNEIDVDGNHAIEFSEFLA 71
Query: 69 L-WKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
L + + S FK FDK+ G I ELK L + G +L D VD ++++
Sbjct: 72 LMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS- 130
Query: 122 HGKGTILFDDFI 133
G G I F
Sbjct: 131 DGSGEINIKQFA 142
Score = 52.9 bits (128), Expect = 1e-09
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 79 CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
F FDKDNSG+I EL T + + G + V LM + D G I F +F+
Sbjct: 16 AFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLA 71
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 77.3 bits (191), Expect = 2e-18
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 12/135 (8%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
L+ F +D D G I+ +L+ L K L++ D + +G+I + +F A
Sbjct: 54 LKSTFLVLDEDGKGYITKEQLKKGLEKDGLKL--PYNFDLLLDQIDSDGSGKIDYTEFIA 111
Query: 69 L---WKYVTD--WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLG-----DNTVDILMKK 118
K ++ F+ FD DN G I EL L + N V +++
Sbjct: 112 AALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRD 171
Query: 119 FDHHGKGTILFDDFI 133
D + G I F +F
Sbjct: 172 VDKNNDGKIDFHEFS 186
Score = 60.3 bits (147), Expect = 4e-12
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139
F D+D G I K +LK L G +L N D+L+ + D G G I + +FI +
Sbjct: 58 FLVLDEDGKGYITKEQLKKGLEKDGLKLPYN-FDLLLDQIDSDGSGKIDYTEFIAAALDR 116
Query: 140 NLLT-----TSFSQHDEDKDGVVT 158
L+ +F D D DG +T
Sbjct: 117 KQLSKKLIYCAFRVFDVDNDGEIT 140
Score = 51.1 bits (123), Expect = 1e-08
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSN----GTWKPFNAETVRLMIGMFDKNNTGQIS 62
+ + F+ D D G I+T EL L N G + V+ MI DKNN G+I
Sbjct: 122 KLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKID 181
Query: 63 FEDF 66
F +F
Sbjct: 182 FHEF 185
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 76.1 bits (188), Expect = 3e-18
Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 13/137 (9%)
Query: 9 LRDIFQRVDR-DKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFG 67
L F+ + + SG +ST+++ + L + + +R +I FD G I F+ F
Sbjct: 15 LETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKST-IRQLIDEFDPFGNGDIDFDSFK 73
Query: 68 ALWKYVTDWQS-----------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILM 116
+ + F+ +DK+ +G I ++ L L +D ++
Sbjct: 74 IIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMI 133
Query: 117 KKFDHHGKGTILFDDFI 133
+ D G GT+ F++F+
Sbjct: 134 DEIDADGSGTVDFEEFM 150
Score = 53.7 bits (130), Expect = 8e-10
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 80 FKSFDK-DNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138
F+ F+ + SG + ++ L G + +T+ L+ +FD G G I FD F +
Sbjct: 19 FRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSF--KIIG 76
Query: 139 LNLLTTSFSQHDEDKD 154
L + ++
Sbjct: 77 ARFLGEEVNPEQMQQE 92
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 76.9 bits (190), Expect = 3e-18
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 18/141 (12%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNA----------ETVRLMIGMFDKNNT 58
L IF+++D + G + EL + V ++ D +
Sbjct: 42 LTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRN 101
Query: 59 GQISFEDFGALWKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTV 112
G I + +F + S F+ FD D SG I EL G + D T
Sbjct: 102 GYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTE--VDDETW 159
Query: 113 DILMKKFDHHGKGTILFDDFI 133
++++ D + G + F++F+
Sbjct: 160 HQVLQECDKNNDGEVDFEEFV 180
Score = 55.0 bits (133), Expect = 4e-10
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
E L FQ+ D D SG I+ EL + ET ++ DKNN G++ FE+F
Sbjct: 123 ERLLAAFQQFDSDGSGKITNEELGRLFGV---TEVDDETWHQVLQECDKNNDGEVDFEEF 179
Query: 67 GALWKYVTDWQ 77
+ + + D +
Sbjct: 180 VEMMQKICDVK 190
Score = 53.1 bits (128), Expect = 2e-09
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 17/96 (17%)
Query: 80 FKSFDKDNSGNIDKLELKTAL-----------GTFGYRLGDNTVDILMKKFDHHGKGTIL 128
F+ D + G +D+ EL + VD +++ D G I
Sbjct: 46 FRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIE 105
Query: 129 FDDFIHCCVMLNLLTT------SFSQHDEDKDGVVT 158
+ +F+ C+ LL + +F Q D D G +T
Sbjct: 106 YSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKIT 141
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 78.0 bits (192), Expect = 4e-18
Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 28/154 (18%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAET-----VRLMIGMFDKNNTGQISF 63
+I+ D D SG + ELQ + A ++ + + + + G+I
Sbjct: 18 FFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGI 77
Query: 64 EDFGALWKYVTDWQSC---------------FKSFDKDNSGNIDKLELKTALGTFGYRLG 108
+ + ++ ++ +D D+SG I+ ELK L +
Sbjct: 78 VELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKAN 137
Query: 109 DNT--------VDILMKKFDHHGKGTILFDDFIH 134
D+++K FD + G + +
Sbjct: 138 KTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMAR 171
Score = 74.5 bits (183), Expect = 7e-17
Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 26/153 (16%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSN-------GTWKPFNAETVRLMIGMFDKNNTGQI 61
+++ D D SG I T EL+ L + AE LM+ +FD NN G++
Sbjct: 105 FMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKL 164
Query: 62 SFEDFGALWK--------------YVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRL 107
+ L ++ F+ +D+D +G ID+ EL L +
Sbjct: 165 ELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKN 224
Query: 108 GDNTVDILMKKF-----DHHGKGTILFDDFIHC 135
+ + G + D
Sbjct: 225 KQELDINNISTYKKNIMALSDGGKLYRTDLALI 257
Score = 51.4 bits (123), Expect = 2e-08
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 8/86 (9%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDI------LMKKFDHHGKGTILFDDFI 133
+ FD D SG ++ EL+ + +++ + ++ G I +
Sbjct: 22 WLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELA 81
Query: 134 HCCVMLNLLTTSFSQHDEDKDGVVTL 159
H V+ +
Sbjct: 82 H--VLPTEENFLLLFRCQQLKSCEEF 105
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 75.3 bits (186), Expect = 5e-18
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
LR+ F+ D+DK G I+ +L + + P E + + + N G + F+DF
Sbjct: 13 LREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEME-LIELSQQINMNLGGHVDFDDFVE 71
Query: 69 L-----------WKYVTDWQSCFKSFDKDNSGNIDKLELKTAL-GTFGYRLGDNTVDILM 116
L V + + F+ FD + G I EL+ A+ G+++G ++ ++
Sbjct: 72 LMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEII 131
Query: 117 KKFDHHGKGTILFDDFI 133
+ D +G G + F++F+
Sbjct: 132 RDVDLNGDGRVDFEEFV 148
Score = 56.8 bits (138), Expect = 6e-11
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 79 CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
F+ FDKD G I+ +L + T GY + + L ++ + + G + FDDF+
Sbjct: 16 AFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVE 71
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 75.7 bits (187), Expect = 5e-18
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 9 LRDIFQRVDRD-KSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFG 67
+ F + G IST EL + P E ++ MI D++ +G + F++F
Sbjct: 20 FKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEE-LQEMIDEVDEDGSGTVDFDEFL 78
Query: 68 ALWK---YVTDWQS-------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMK 117
+ F+ FDK+ G ID ELK L G + ++ ++ LMK
Sbjct: 79 VMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMK 138
Query: 118 KFDHHGKGTILFDDFI 133
D + G I +D+F+
Sbjct: 139 DGDKNNDGRIDYDEFL 154
Score = 51.0 bits (123), Expect = 7e-09
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 80 FKSFDKD-NSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
F F G+I EL + G + ++ + D G GT+ FD+F+
Sbjct: 24 FDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLV 79
Score = 47.2 bits (113), Expect = 2e-07
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 2 AMPPPEFLRDIFQRVDRDKSGLISTNELQMALSN-GTWKPFNAETVRLMIGMFDKNNTGQ 60
E L D+F+ D++ G I EL++ L G + + + ++ DKNN G+
Sbjct: 90 KGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATG--ETITEDDIEELMKDGDKNNDGR 147
Query: 61 ISFEDF 66
I +++F
Sbjct: 148 IDYDEF 153
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 76.3 bits (188), Expect = 5e-18
Identities = 28/147 (19%), Positives = 43/147 (29%), Gaps = 21/147 (14%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSN----GTWKPFNAETVR-LMIGMF---DKNNTGQ 60
++ QRVD G IS + ++ AE R + + +
Sbjct: 16 MKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVR 75
Query: 61 ISFEDFGALW-------------KYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRL 107
IS E+ V + D D G + E K L G L
Sbjct: 76 ISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDL 135
Query: 108 GDNTVDILMKKFDHHGKGTILFDDFIH 134
D+ D + G I D+F+
Sbjct: 136 TDDKAITCFNTLDFNKNGQISRDEFLV 162
Score = 51.7 bits (124), Expect = 6e-09
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
++ +D DK G +S E + L + D N GQIS ++F
Sbjct: 102 IQSLIMYDCIDTDKDGYVSLPEFKAFLQA-VGPDLTDDKAITCFNTLDFNKNGQISRDEF 160
Query: 67 GALWK 71
Sbjct: 161 LVTVN 165
Score = 39.0 bits (91), Expect = 2e-04
Identities = 11/111 (9%), Positives = 27/111 (24%), Gaps = 22/111 (19%)
Query: 71 KYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT---------VDILMKKFDH 121
++ ++ + D G I + + + + + +
Sbjct: 11 YHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGL 70
Query: 122 HGKGTILFDDFIHCCV-------------MLNLLTTSFSQHDEDKDGVVTL 159
I ++ + + D DKDG V+L
Sbjct: 71 APGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSL 121
Score = 27.4 bits (61), Expect = 2.1
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 6 PEFLRDIFQRVDRDKSGLISTNELQMALSN 35
+ F +D +K+G IS +E + +++
Sbjct: 137 DDKAITCFNTLDFNKNGQISRDEFLVTVND 166
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 74.2 bits (183), Expect = 2e-17
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 19/137 (13%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSN-GTWKPFNAETVRLMIGMFDKNNTGQISFEDFG 67
++ F +D++ G+I ++L+ + G N E + MI K +G I+F F
Sbjct: 27 FKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEE-LDAMI----KEASGPINFTVFL 81
Query: 68 ALWKYVTDWQS----------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMK 117
+ + FK D D G+I K L+ L T G R + +
Sbjct: 82 TM---FGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWA 138
Query: 118 KFDHHGKGTILFDDFIH 134
F G + + + +
Sbjct: 139 AFPPDVAGNVDYKNICY 155
Score = 44.9 bits (107), Expect = 1e-06
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFE 64
P + + F+ +D D G I + L+ L+ G + F E ++ M F + G + ++
Sbjct: 93 PEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGR-FTPEEIKNMWAAFPPDVAGNVDYK 151
Query: 65 DF 66
+
Sbjct: 152 NI 153
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 74.4 bits (183), Expect = 2e-17
Identities = 24/153 (15%), Positives = 46/153 (30%), Gaps = 29/153 (18%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSN----GTWKPFNAETVRL----------MIGMFD 54
+ F D+D +G I ++ A + L + G+ D
Sbjct: 6 IAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIAD 65
Query: 55 KNNTGQISFEDFGALW-KYVTDWQS------------CFKSFDKDNSGNIDKLELKTALG 101
++ +I+ E+F K + D D D G + + AL
Sbjct: 66 RDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALT 125
Query: 102 TFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
FG + ++ D G G + + +
Sbjct: 126 AFG--VPEDLARQAAAALDTDGDGKVGETEIVP 156
Score = 54.4 bits (131), Expect = 5e-10
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSN-GTWKPFNAETVRLMIGMFDKNNTGQISFED 65
FL D D G ++ + AL+ G + R D + G++ +
Sbjct: 98 PFLHAALGVADTDGDGAVTVADTARALTAFG----VPEDLARQAAAALDTDGDGKVGETE 153
Query: 66 FGALWK 71
+
Sbjct: 154 IVPAFA 159
Score = 44.0 bits (104), Expect = 3e-06
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 28/108 (25%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTV---------------DILMKKFDHHGK 124
F +FD+D +G+ID+ + A G L D G
Sbjct: 10 FTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGD 69
Query: 125 GTILFDDFIHCC-------------VMLNLLTTSFSQHDEDKDGVVTL 159
I ++F+ + L + D D DG VT+
Sbjct: 70 QRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTV 117
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 73.7 bits (182), Expect = 2e-17
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 9 LRDIFQRVD--RDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
L+D+F+ D + G + +L P N + +G K + FE+F
Sbjct: 11 LKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV--FAVGGTHKMGEKSLPFEEF 68
Query: 67 GALWKYVTDWQS--------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKK 118
++ + D + FK+FD++ G I EL+ L G RL D VD ++K
Sbjct: 69 LPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 128
Query: 119 FDHH--GKGTILFDDFI 133
D +G + ++DF+
Sbjct: 129 TDLQEDLEGNVKYEDFV 145
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 72.9 bits (180), Expect = 3e-17
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
++ F+ D +++G I+ LQ L + A M D G+I F +F +
Sbjct: 8 FKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAA-FNEMFNEADATGNGKIQFPEFLS 66
Query: 69 L-WKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
+ + + S F++FD + +G I K L+ AL G RL + + +
Sbjct: 67 MMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE- 125
Query: 122 HGKGTILFDDFIH 134
KG I +D+FI+
Sbjct: 126 TEKGQIRYDNFIN 138
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 72.6 bits (179), Expect = 6e-17
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMF--DKNNTGQISFEDF 66
++ F+ DR G I ++ + P NAE V ++G D+ + ++ FE F
Sbjct: 12 FKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAE-VLKVLGNPKSDELKSRRVDFETF 70
Query: 67 GALWKYVT---------DWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMK 117
+ + V D+ F+ FDK+ +G + EL+ L T G ++ + V+ ++
Sbjct: 71 LPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLA 130
Query: 118 KFDHHGKGTILFDDFIHCCVMLNL 141
G I ++ F+ +L++
Sbjct: 131 G-HEDSNGCINYEAFLK--HILSV 151
Score = 39.1 bits (92), Expect = 2e-04
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFE 64
E + F+ D++ +G + EL+ L+ K E V ++ +++ G I++E
Sbjct: 85 TYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEK-MTEEEVETVLA-GHEDSNGCINYE 142
Query: 65 DF 66
F
Sbjct: 143 AF 144
Score = 34.1 bits (79), Expect = 0.007
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 30/90 (33%)
Query: 79 CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138
F+ FD+ G I + + G + V ++
Sbjct: 15 AFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLG--------------------- 53
Query: 139 LNLLTTSFSQHDEDKDGVVTLHYEQFLSMV 168
D+ + +E FL M+
Sbjct: 54 ---------NPKSDELKSRRVDFETFLPML 74
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 73.1 bits (180), Expect = 7e-17
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+ ++F ++D + +G +S E+ L++ + ++ D N+ G I++ +F A
Sbjct: 41 INELFYKLDTNHNGSLSHREIYTVLAS---VGIKKWDINRILQALDINDRGNITYTEFMA 97
Query: 69 L---WKYVTD--WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHG 123
WK + ++ F DKD G I K ++ + + L +N +D
Sbjct: 98 GCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVH--DKVLDNNDIDNFFLSVHSIK 155
Query: 124 KGT--------ILFDDFIH 134
KG I F +F
Sbjct: 156 KGIPREHIINKISFQEFKD 174
Score = 57.3 bits (139), Expect = 6e-11
Identities = 17/84 (20%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139
F D +++G++ E+ T L + G + ++ +++ D + +G I + +F+ C
Sbjct: 45 FYKLDTNHNGSLSHREIYTVLASVG--IKKWDINRILQALDINDRGNITYTEFMAGCYRW 102
Query: 140 NLLTTS-----FSQHDEDKDGVVT 158
+ ++ F++ D+D+DG ++
Sbjct: 103 KNIESTFLKAAFNKIDKDEDGYIS 126
Score = 45.0 bits (107), Expect = 2e-06
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTG------- 59
FL+ F ++D+D+ G IS +++ + + K + + G
Sbjct: 108 TFLKAAFNKIDKDEDGYISKSDIVSLVHD---KVLDNNDIDNFFLSVHSIKKGIPREHII 164
Query: 60 -QISFEDF 66
+ISF++F
Sbjct: 165 NKISFQEF 172
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 72.1 bits (177), Expect = 1e-16
Identities = 23/154 (14%), Positives = 44/154 (28%), Gaps = 30/154 (19%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSN----GTWKPFNAETVRL----------MIGMFD 54
L+ F R D D +G + + + + AE L +
Sbjct: 9 LKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAG 68
Query: 55 KNNTGQISFEDFGALWK--------------YVTDWQSCFKSFDKDNSGNIDKLELKTAL 100
+ G ++ E F + + + DK+ G I+ E L
Sbjct: 69 VGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWL 128
Query: 101 GTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
G + + D +G G + D+ +
Sbjct: 129 TALG--MSKAEAAEAFNQVDTNGNGELSLDELLT 160
Score = 53.6 bits (129), Expect = 1e-09
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSN-GTWKPFNAETVRLMIGMFDKNNTGQISFED 65
++ I D++ G I+ +E L+ G + D N G++S ++
Sbjct: 102 PVVKGIVGMCDKNADGQINADEFAAWLTALG----MSKAEAAEAFNQVDTNGNGELSLDE 157
Query: 66 FGALWK 71
+
Sbjct: 158 LLTAVR 163
Score = 49.4 bits (118), Expect = 5e-08
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSN-------GTWKPFNAETVRLMIGMFDKNNTG 59
+ + G ++ + N ++ V+ ++GM DKN G
Sbjct: 58 GLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADG 117
Query: 60 QISFEDFGALWKYV----TDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDIL 115
QI+ ++F A + + F D + +G + EL TA+ F + G V++L
Sbjct: 118 QINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVRDFHF--GRLDVELL 175
Score = 42.8 bits (101), Expect = 1e-05
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 29/108 (26%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDN---------------TVDILMKKFDHHGK 124
F +D D +G +++ + + G + D L K+
Sbjct: 13 FDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSD 72
Query: 125 GTILFDDFIHCC--------------VMLNLLTTSFSQHDEDKDGVVT 158
G++ + FI V+ ++ D++ DG +
Sbjct: 73 GSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQIN 120
Score = 25.1 bits (55), Expect = 9.9
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMAL 33
+ F +VD + +G +S +EL A+
Sbjct: 134 SKAEAAEAFNQVDTNGNGELSLDELLTAV 162
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 71.4 bits (176), Expect = 1e-16
Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDK--NNTGQISFEDF 66
++ F DR I+ +++ P NAE + ++G K N I+FE+F
Sbjct: 10 FKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAE-INKILGNPSKEEMNAAAITFEEF 68
Query: 67 GALWKYV---TDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMK 117
+ + D + + FDK+ +G + EL+ L T G ++ + V+ LMK
Sbjct: 69 LPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMK 128
Query: 118 KFDHHGKGTILFDDFIHCCVMLNL 141
+ G I ++ F+ ++++
Sbjct: 129 GQE-DSNGCINYEAFVK--HIMSV 149
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 72.5 bits (178), Expect = 2e-16
Identities = 29/173 (16%), Positives = 47/173 (27%), Gaps = 32/173 (18%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMAL----SNGTWKPFNAE----TVRLMIGMFDKNNTGQ 60
L F D D G + +E+ E VR+
Sbjct: 38 LYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNG 97
Query: 61 ISFEDFGALWKYVTD-----------------WQSCFKSFDKDNSGNIDKLELKTALGTF 103
+ ED+ + + S + D D G +D ELKT + F
Sbjct: 98 LLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAF 157
Query: 104 GYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGV 156
+ +K D G + + +H + +D DGV
Sbjct: 158 D--VPQEAAYTFFEKADTDKSGKLERTELVH--LFRKFW---MEPYDPQWDGV 203
Score = 51.0 bits (122), Expect = 2e-08
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSN-GTWKPFNAETVRLMIGMFDKNNTGQISFED 65
+ +D D G + +EL+ + E D + +G++ +
Sbjct: 128 LLSNSYYDVLDDDGDGTVDVDELKTMMKAFD----VPQEAAYTFFEKADTDKSGKLERTE 183
Query: 66 FGALWK 71
L++
Sbjct: 184 LVHLFR 189
Score = 49.4 bits (118), Expect = 6e-08
Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 35/141 (24%)
Query: 54 DKNNTGQISFEDFGALWKY---------VTDWQSCFKSFDKDNSGNIDKLELKTALGTFG 104
++NN G W++ ++ F +FD D+ G ++ E+
Sbjct: 7 EQNNESYRYLRSVGNQWQFNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMR 66
Query: 105 YRLGD---------NTVDILMKKFDHHGKGTILFDDFIHCCVMLN--------------- 140
+ + V + +L +D++ +
Sbjct: 67 QLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLI 126
Query: 141 --LLTTSFSQHDEDKDGVVTL 159
L + + D+D DG V +
Sbjct: 127 ALLSNSYYDVLDDDGDGTVDV 147
Score = 25.5 bits (56), Expect = 9.1
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSN 35
P E F++ D DKSG + EL
Sbjct: 160 PQEAAYTFFEKADTDKSGKLERTELVHLFRK 190
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 71.0 bits (175), Expect = 2e-16
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+++ FQ D+D G +S EL AL + P NAE + + G + F
Sbjct: 7 IQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAE-LNTIKGQLNAKE---FDLATFKT 62
Query: 69 LWKYVT--------DWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFD 120
+++ + F++ DK+ +G I + EL+ L G L + V+ LMK+
Sbjct: 63 VYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVS 122
Query: 121 HHGKGTILFDDFIH 134
G G I ++ F+
Sbjct: 123 VSGDGAINYESFVD 136
Score = 43.7 bits (104), Expect = 3e-06
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSN-GTWKPFNAETVRLMIGMFDKNNTGQISF 63
+ + D F+ +D++ +G I EL+ L N G + V ++ + G I++
Sbjct: 74 QSKEMLDAFRALDKEGNGTIQEAELRQLLLNLG--DALTSSEVEELMKEVSVSGDGAINY 131
Query: 64 EDF 66
E F
Sbjct: 132 ESF 134
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 70.2 bits (173), Expect = 3e-16
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
++ F +D+++ G I +L L++ P + + M+ G I+F F
Sbjct: 9 FKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEY-LEGMM----SEAPGPINFTMFLT 63
Query: 69 L-WKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
+ + + F FD++ SG I + L+ L T G R D VD + ++
Sbjct: 64 MFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPI 123
Query: 122 HGKGTILFDDFIH 134
KG + +F
Sbjct: 124 DKKGNFNYVEFTR 136
Score = 44.8 bits (107), Expect = 1e-06
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFE 64
P + +R+ F D + SG I + L+ L+ + F E V M + G ++
Sbjct: 74 PEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDR-FTDEEVDEMYREAPIDKKGNFNYV 132
Query: 65 DF 66
+F
Sbjct: 133 EF 134
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 70.7 bits (174), Expect = 3e-16
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 17/138 (12%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF-G 67
L F+++D D SG +S E N V+ +I +FD + G++ F++F
Sbjct: 8 LGKRFKKLDLDNSGSLSVEEFMSLPELQ----QN-PLVQRVIDIFDTDGNGEVDFKEFIE 62
Query: 68 ALWKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTF-GYRLGD----NTVDILM 116
+ ++ F+ +D D G I EL L G L D VD +
Sbjct: 63 GVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTI 122
Query: 117 KKFDHHGKGTILFDDFIH 134
D G G I F++F
Sbjct: 123 INADKDGDGRISFEEFCA 140
Score = 49.2 bits (118), Expect = 3e-08
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDN-TVDILMKKFDHHGKGTILFDDFIHCCVM 138
FK D DNSG++ E + L N V ++ FD G G + F +FI +
Sbjct: 12 FKKLDLDNSGSLSVEEFMSLP-----ELQQNPLVQRVIDIFDTDGNGEVDFKEFIE--GV 64
Query: 139 LNL---------LTTSFSQHDEDKDGVVT 158
L +F +D DKDG ++
Sbjct: 65 SQFSVKGDKEQKLRFAFRIYDMDKDGYIS 93
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 71.6 bits (176), Expect = 4e-16
Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 15/139 (10%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
L F+++DRD S + +E + L+ AE + +D+N +G + E+F
Sbjct: 39 LARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAE-AEGVCRKWDRNGSGTLDLEEFLR 97
Query: 69 LWKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTF-------GYRLGDNTVDIL 115
+ F D+ G + +L+ G D +
Sbjct: 98 ALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRF 157
Query: 116 MKKFDHHGK-GTILFDDFI 133
+ FD K G + +F
Sbjct: 158 LDNFDSSEKDGQVTLAEFQ 176
Score = 65.1 bits (159), Expect = 1e-13
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139
F+ D+D S ++D E + L G L + + +K+D +G GT+ ++F+
Sbjct: 43 FRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPP 102
Query: 140 N------LLTTSFSQHDEDKDGVVTL 159
++ +F++ D DGVVT+
Sbjct: 103 MSQAREAVIAAAFAKLDRSGDGVVTV 128
Score = 44.3 bits (105), Expect = 4e-06
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 1 MAMPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNA------ETVRLMIGMFD 54
M+ + F ++DR G+++ ++L+ S + E +R + FD
Sbjct: 103 MSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFD 162
Query: 55 KN-NTGQISFEDF 66
+ GQ++ +F
Sbjct: 163 SSEKDGQVTLAEF 175
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 70.9 bits (174), Expect = 5e-16
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 28/168 (16%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGT-----WKPFNAETVRLMIGMF----DKNNTG 59
+ +F +D + +G I+ +E+ S+ P + ++ + F
Sbjct: 22 HKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGK 81
Query: 60 QISFEDFGALWKYVT-----------------DWQSCFKSFDKDNSGNIDKLELKTALGT 102
+I+F F WK + + F FDKD SG I E K
Sbjct: 82 EIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKI 141
Query: 103 FGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFSQHD 150
G + + D G + D+ L T + D
Sbjct: 142 SGISPSQEDCEATFRHCDLDNAGDLDVDEMTR--QHLGFWYTLDPEAD 187
Score = 49.4 bits (118), Expect = 5e-08
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
E+ +F D+D SG I+ +E + + E D +N G + ++
Sbjct: 113 EWGDAVFDIFDKDGSGTITLDEWKAYGKISGIS-PSQEDCEATFRHCDLDNAGDLDVDEM 171
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 69.9 bits (172), Expect = 6e-16
Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 15/139 (10%)
Query: 9 LRDIFQRVD--RDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+R++F D + G + ++ L P A+ V G K E+
Sbjct: 11 VREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQ-VHQHGGT-KKMGEKAYKLEEI 68
Query: 67 GALWKYVTDWQS---------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMK 117
+++ ++ + FK+FD++ G I E++ L G R+ ++ + +
Sbjct: 69 LPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128
Query: 118 KFDHH--GKGTILFDDFIH 134
D G I ++D +
Sbjct: 129 FCDIREDIDGNIKYEDLMK 147
Score = 39.1 bits (92), Expect = 2e-04
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSN-GTWKPFNAETVRLMIGMFD--KNNTGQI 61
+ + F+ DR+ GLIS+ E++ L G + + + D ++ G I
Sbjct: 83 AADEFMEAFKTFDREGQGLISSAEIRNVLKMLG--ERITEDQCNDIFTFCDIREDIDGNI 140
Query: 62 SFEDF 66
+ED
Sbjct: 141 KYEDL 145
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 70.6 bits (173), Expect = 6e-16
Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 32/174 (18%)
Query: 9 LRDIFQRVDRDKSGLISTNELQ-----MALSNGTWKPFNAETVRLMI-GMFDKNNT---G 59
+ +F +D + +G IS +E+ + ++N P A+ + + F
Sbjct: 18 HKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGV 77
Query: 60 QISFEDFGALWK-----------------YVTDWQSCFKSFDKDNSGNIDKLELKTALGT 102
+ + + WK + F DKD +G I E K
Sbjct: 78 ETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKA 137
Query: 103 FGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGV 156
G + + D G + D+ L T D + +
Sbjct: 138 AGIIQSSEDCEETFRVCDIDESGQLDVDEMTR--QHLGFWYTM----DPACEKL 185
Score = 50.2 bits (120), Expect = 2e-08
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+ +F VD+D++G I+ +E + ++E + D + +GQ+ ++
Sbjct: 109 IWGDALFDIVDKDQNGAITLDEWKAYTKA-AGIIQSSEDCEETFRVCDIDESGQLDVDEM 167
Query: 67 GALWK 71
Sbjct: 168 TRQHL 172
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 68.6 bits (168), Expect = 3e-15
Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 23/147 (15%)
Query: 9 LRDIFQRVDRDKSGLISTNELQ-MALSNGTWKPFNAETVRLMIGMF---------DKNNT 58
++ F R+D DK G I+ + + MA AE ++++
Sbjct: 8 MKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGG 67
Query: 59 GQISFEDFGALWKYVTD-----------WQSCFKSFDKDNSGNIDKLELKTALGTFGYRL 107
I F K + F++ D + NI + E G G L
Sbjct: 68 KGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG--L 125
Query: 108 GDNTVDILMKKFDHHGKGTILFDDFIH 134
D + G + ++F+
Sbjct: 126 DKTMAPASFDAIDTNNDGLLSLEEFVI 152
Score = 52.8 bits (127), Expect = 2e-09
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
L F+ VD ++ IS +E + + D NN G +S E+F
Sbjct: 94 GPLPLFFRAVDTNEDNNISRDEYGIFFGM---LGLDKTMAPASFDAIDTNNDGLLSLEEF 150
Query: 67 GALWK 71
Sbjct: 151 VIAGS 155
Score = 41.2 bits (97), Expect = 3e-05
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 8/100 (8%)
Query: 14 QRVDRDKSGLISTNE----LQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGAL 69
I ++ + N K + L D N IS +++G
Sbjct: 60 FLTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIF 119
Query: 70 WKYV----TDWQSCFKSFDKDNSGNIDKLELKTALGTFGY 105
+ + T + F + D +N G + E A F
Sbjct: 120 FGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFM 159
Score = 34.3 bits (79), Expect = 0.008
Identities = 9/91 (9%), Positives = 19/91 (20%), Gaps = 25/91 (27%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLG--DNTVDILMKKFDHHGKGTILFDDFIHCCV 137
F D D G I +++ ++ F +LM
Sbjct: 12 FNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNF----------- 60
Query: 138 MLNLLTTSFSQHDEDKDGVVTLHYEQFLSMV 168
+ F++ +
Sbjct: 61 ----------LTAVAGGKGID--ETTFINSM 79
Score = 25.5 bits (56), Expect = 7.7
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNE 28
F +D + GL+S E
Sbjct: 126 DKTMAPASFDAIDTNNDGLLSLEE 149
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 67.9 bits (167), Expect = 3e-15
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 15/135 (11%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+ F DR +G I + L P AE I + ++ E F
Sbjct: 7 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE-----ITEIESTLPAEVDMEQFLQ 61
Query: 69 LWKYVTDWQS---------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKF 119
+ + F+ FDKD +G I EL+ L + G +L + +D L+K
Sbjct: 62 VLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGV 121
Query: 120 DHHGKGTILFDDFIH 134
G + + DF+
Sbjct: 122 PVK-DGMVNYHDFVQ 135
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 67.9 bits (166), Expect = 7e-15
Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 32/156 (20%)
Query: 9 LRDIFQRV-DRDKSGLISTNELQMALSN----GTWKPFNAETVRL----------MIGMF 53
+ +F D + G+I ++ ++A+ +W + +
Sbjct: 14 ILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYA 73
Query: 54 DKNNTGQISFEDFGALWKYVTD---------------WQSCFKSFDKDNSGNIDKLELKT 98
D+N Q++ E++ +W F D IDK E T
Sbjct: 74 DENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYST 133
Query: 99 ALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
++G + + D GK + + F
Sbjct: 134 VYMSYG--IPKSDCDAAFDTLSDGGKTMVTREIFAR 167
Score = 50.2 bits (120), Expect = 2e-08
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 3/65 (4%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+++ +F D +I +E + ++ E F
Sbjct: 109 KYMNFMFDVNDTSGDNIIDKHEYSTVYMS---YGIPKSDCDAAFDTLSDGGKTMVTREIF 165
Query: 67 GALWK 71
LW
Sbjct: 166 ARLWT 170
Score = 34.8 bits (80), Expect = 0.006
Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 30/123 (24%)
Query: 52 MFDKNNTGQISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT 111
+D N+ G I ++DF K + N+
Sbjct: 21 FYDCNHDGVIEWDDFELAIKKI---------------CNLHSWPTDGKKHNEARATLKLI 65
Query: 112 VDILMKKFDHHGKGTILFDDFIHCCV---------------MLNLLTTSFSQHDEDKDGV 156
D L K D + + ++++ + + F +D D +
Sbjct: 66 WDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNI 125
Query: 157 VTL 159
+
Sbjct: 126 IDK 128
Score = 32.1 bits (73), Expect = 0.047
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 18/94 (19%)
Query: 76 WQSCFKS-FDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
F + +D ++ G I+ + + A+ T +
Sbjct: 14 ILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARA------------- 60
Query: 135 CCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMV 168
+ + DE++D VT E++L M
Sbjct: 61 --TLKLIWDGLRKYADENEDEQVT--KEEWLKMW 90
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 68.9 bits (168), Expect = 9e-15
Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 34/160 (21%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMAL------SNGTWKPFN---AETVRLMIGMFDKNNTG 59
I+Q D D +G I EL K + + + + +D G
Sbjct: 13 FLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDG 72
Query: 60 QISFEDFGALWKYVT-----------------DWQSCFKSFDKDNSGNIDKLELKTALGT 102
++ E+ + ++ ++ +D D+SG I ELK L
Sbjct: 73 RLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKD 132
Query: 103 FGYRLG--------DNTVDILMKKFDHHGKGTILFDDFIH 134
+ D D +MK FD + G + +D
Sbjct: 133 LFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLAR 172
Score = 68.6 bits (167), Expect = 1e-14
Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 33/162 (20%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNA-------ETVRLMIGMFDKNNTG 59
I+++ D D SG IS EL+ L + + E M+ +FDKN G
Sbjct: 104 VEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDG 163
Query: 60 QISFEDFGALWKYVT------------------DWQSCFKSFDKDNSGNIDKLELKTALG 101
++ D + D++ F +D +G ++ E+ +
Sbjct: 164 RLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVK 223
Query: 102 TFGYRLG--------DNTVDILMKKFDHHGKGTILFDDFIHC 135
+ D + L+ D + G I + C
Sbjct: 224 DMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALC 265
Score = 47.4 bits (112), Expect = 4e-07
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDI----------LMKKFDHHGKGTILF 129
++ FD D++G I+ EL +L M +D G +
Sbjct: 17 WQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQI 76
Query: 130 DDFIHCCVMLNLLTTSFSQHDEDKDGVVTL 159
++ + + + + D V
Sbjct: 77 EELANMILPQEENFLLIFRREAPLDNSVEF 106
Score = 42.4 bits (99), Expect = 2e-05
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 25/120 (20%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIG-----------MFDK 55
E+ + + D++K G + N+L L+ + +D
Sbjct: 148 EYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDV 207
Query: 56 NNTGQISFEDFGALWKYVTDWQSC--------------FKSFDKDNSGNIDKLELKTALG 101
+ TG + + K + + D + G I K EL LG
Sbjct: 208 SRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLG 267
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 66.4 bits (163), Expect = 1e-14
Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 13/133 (9%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+++ F +D D+ G +S +++ P + E + M+ K G ++F F +
Sbjct: 20 MKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKE-LTAML----KEAPGPLNFTMFLS 74
Query: 69 L-WKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
+ ++ S F FD+ + ++ +K L G + + + K+
Sbjct: 75 IFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPV 134
Query: 122 HGKGTILFDDFIH 134
G G + F
Sbjct: 135 EG-GKFDYVKFTA 146
Score = 40.6 bits (96), Expect = 5e-05
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFE 64
E +R+ F D ++ ++ ++ L N FN + +R+ G+ +
Sbjct: 85 SEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDN-FNKDEMRMTFKEAPVEG-GKFDYV 142
Query: 65 DF 66
F
Sbjct: 143 KF 144
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 66.1 bits (162), Expect = 1e-14
Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 14/133 (10%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
++ G IS + P + + + +++E +
Sbjct: 17 SDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSID-----EKKIKELYGDNLTYEQYLE 71
Query: 69 LWKYVT-------DWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
+ F FD + +G + K ++K L T+G L D + F
Sbjct: 72 YLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFS- 130
Query: 122 HGKGTILFDDFIH 134
+ I + F
Sbjct: 131 -SEDNIDYKLFCE 142
Score = 39.9 bits (94), Expect = 7e-05
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFE 64
E L +F D + +G ++ ++++ L+ + + F I ++
Sbjct: 82 NVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDA-LTDQEAIDALNAFSSE--DNIDYK 138
Query: 65 DF 66
F
Sbjct: 139 LF 140
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 66.2 bits (162), Expect = 3e-14
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
++ FQ +D+DK G IS N+++ + E + M+ G I+F F
Sbjct: 59 FKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQE-LDSMV----AEAPGPINFTMFLT 113
Query: 69 L-WKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
+ + F FD+ + G + LK +L T+G + + VD + +
Sbjct: 114 IFGDRIAGTDEEDVIVNAFNLFDEGD-GKCKEETLKRSLTTWGEKFSQDEVDQALSEAPI 172
Query: 122 HGKGTILFDDFIH 134
G G I F
Sbjct: 173 DGNGLIDIKKFAQ 185
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 66.0 bits (161), Expect = 5e-14
Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 18/154 (11%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF-G 67
F SGL + +E + L + + + FD N G + F +F
Sbjct: 24 WYRTFM--MEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIA 81
Query: 68 ALWKYVTDWQS-----CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT------VDILM 116
A+ + + FK +D D +G+IDK EL G T ++++
Sbjct: 82 AVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVF 141
Query: 117 KKFDHHGKGTILFDDFIHCC----VMLNLLTTSF 146
K D + G + ++FI+ +L ++ SF
Sbjct: 142 HKIDINNDGELTLEEFINGMAKDQDLLEIVYKSF 175
Score = 44.0 bits (104), Expect = 4e-06
Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 22/148 (14%)
Query: 41 FNAETVRLMIGMF-DKNNTGQISFEDFGALWKYV-------TDWQSCFKSFDKDNSGNID 92
+ + F + +G + +F L + +FD + G +D
Sbjct: 16 VPTQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVD 75
Query: 93 KLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTS------- 145
LE A+ + + K +D G G+I ++ + + + L
Sbjct: 76 FLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEE 135
Query: 146 -----FSQHDEDKDGVVTLHYEQFLSMV 168
F + D + DG +T E+F++ +
Sbjct: 136 FINLVFHKIDINNDGELT--LEEFINGM 161
Score = 41.7 bits (98), Expect = 3e-05
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMAL-----SNGTWKPFNAETVRLMIGMFDKNNTGQI 61
+ L+ F+ D D +G I NEL NG E + L+ D NN G++
Sbjct: 93 QKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGEL 152
Query: 62 SFEDFGALWKYVTDW-QSCFKSFDKDN 87
+ E+F D + +KSFD N
Sbjct: 153 TLEEFINGMAKDQDLLEIVYKSFDFSN 179
Score = 29.8 bits (67), Expect = 0.30
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNE-LQMALSNGTWKPFNAETVRLMIGMFDKNNTGQI 61
+ P EF+ +F ++D + G ++ E + + + ++ FD +N ++
Sbjct: 131 LSPEEFINLVFHKIDINNDGELTLEEFINGMAKDQDL-------LEIVYKSFDFSNVLRV 183
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 65.2 bits (159), Expect = 8e-14
Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 17/147 (11%)
Query: 17 DRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF-GALWKYVTD 75
SG ++ E + P + V M FD N G I F ++ AL +
Sbjct: 25 TECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKG 84
Query: 76 W-----QSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDN-------TVDILMKKFDHHG 123
+ FK +D D +G ID+ EL + N +++ K D +G
Sbjct: 85 KVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDING 144
Query: 124 KGTILFDDFIHCC----VMLNLLTTSF 146
G + ++F+ V+L++LT S
Sbjct: 145 DGELSLEEFMEGVQKDEVLLDILTRSL 171
Score = 48.6 bits (116), Expect = 1e-07
Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 23/149 (15%)
Query: 41 FNAETVRLMIGMF-DKNNTGQISFEDFGALWKYV-------TDWQSCFKSFDKDNSGNID 92
+A F + +GQ++ +F + + F++FD + G ID
Sbjct: 11 LSATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYID 70
Query: 93 KLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTS------- 145
+E AL D + K +D G G I + ++ + +
Sbjct: 71 FMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAE 130
Query: 146 ------FSQHDEDKDGVVTLHYEQFLSMV 168
F + D + DG ++ E+F+ V
Sbjct: 131 EFTNMVFDKIDINGDGELS--LEEFMEGV 157
Score = 38.6 bits (90), Expect = 4e-04
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNA------ETVRLMIGMFDKNNTGQIS 62
LR F+ D D +G I EL + E ++ D N G++S
Sbjct: 90 LRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELS 149
Query: 63 FEDF 66
E+F
Sbjct: 150 LEEF 153
Score = 25.5 bits (56), Expect = 9.6
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSN 35
EF +F ++D + G +S E +
Sbjct: 129 AEEFTNMVFDKIDINGDGELSLEEFMEGVQK 159
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 65.2 bits (159), Expect = 1e-13
Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 33/154 (21%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF-- 66
L F+ +DR+K G +S +LQ + P +I F + + ++ F F
Sbjct: 31 LHHRFRALDRNKKGYLSRMDLQQIGALAV-NPLGDR----IIESFFPDGSQRVDFPGFVR 85
Query: 67 -------------GALWKYVTDWQS--------CFKSFDKDNSGNIDKLELKTALGT-FG 104
+ + F+ +D D G I + E+ L G
Sbjct: 86 VLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVG 145
Query: 105 YRLGD----NTVDILMKKFDHHGKGTILFDDFIH 134
++ + N D +++ D G G + F +F
Sbjct: 146 VQVTEEQLENIADRTVQEADEDGDGAVSFVEFTK 179
Score = 46.7 bits (111), Expect = 5e-07
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 73 VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDN-TVDILMKKFDHHGKGTILFDD 131
+ F++ D++ G + +++L+ L N D +++ F G + F
Sbjct: 28 LLRLHHRFRALDRNKKGYLSRMDLQQIG-----ALAVNPLGDRIIESFFPDGSQRVDFPG 82
Query: 132 FIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMVFSL 171
F+ + ++ + K L F L
Sbjct: 83 FVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQL 122
Score = 43.2 bits (102), Expect = 8e-06
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRL----MIGMFDKNNTGQIS 62
L FQ D D+ G IS +E+ L E + + D++ G +S
Sbjct: 114 NKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVS 173
Query: 63 FEDF 66
F +F
Sbjct: 174 FVEF 177
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 62.9 bits (154), Expect = 3e-13
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 13/133 (9%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
L++ F +D+D+ G I +L+ S+ P + E + M+ GQ++F F
Sbjct: 18 LKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDE-LNAMLKECP----GQLNFTAFLT 72
Query: 69 L-WKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
L + V+ F FD+D G I + LK L G + + K
Sbjct: 73 LFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAP- 131
Query: 122 HGKGTILFDDFIH 134
++ +
Sbjct: 132 LKNKQFNYNKMVD 144
Score = 40.2 bits (95), Expect = 5e-05
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFE 64
P + LR+ F D D G I + L+ L N F+ E ++ + N Q ++
Sbjct: 83 PEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDN-FSKEEIKNVWKDAPLKN-KQFNYN 140
Query: 65 DF 66
Sbjct: 141 KM 142
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 61.3 bits (149), Expect = 3e-13
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
F++FD + I + E + L D D L + + KG + + DF+
Sbjct: 30 FENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFL 83
Score = 50.9 bits (122), Expect = 4e-09
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+ F+ D K+ IS E + + + E + N G++ + DF
Sbjct: 26 ITQEFENFDTMKTNTISREEFRAICNR-RVQILTDEQFDRLWNEMPVNAKGRLKYPDF 82
Score = 36.7 bits (85), Expect = 6e-04
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 52 MFDKNNTGQISFEDFGALWK----YVTD--WQSCFKSFDKDNSGNID 92
FD T IS E+F A+ +TD + + + G +
Sbjct: 32 NFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLK 78
Score = 34.4 bits (79), Expect = 0.004
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 117 KKFDHHGKGTILFDDFIHCCVMLNLLTTS------FSQHDEDKDGVVTLHYEQFLSMVFS 170
+ FD TI ++F C + T +++ + G + Y FLS FS
Sbjct: 31 ENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRL--KYPDFLSR-FS 87
Query: 171 LKM 173
+
Sbjct: 88 SET 90
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 63.0 bits (153), Expect = 4e-13
Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 32/156 (20%)
Query: 9 LRDIFQRV-DRDKSGLISTNELQMALSNGT----WKPFNAETVRL----------MIGMF 53
++ F D + G I N+ + ++ +A+ + + G
Sbjct: 10 IKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRA 69
Query: 54 DKNNTGQISFEDFGALWKYVTDW---------------QSCFKSFDKDNSGNIDKLELKT 98
D N +S+E++ A+W+ FK D G +D E +
Sbjct: 70 DINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQN 129
Query: 99 ALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
F L V + GK T + +
Sbjct: 130 YCKNFQ--LQCADVPAVYNVITDGGKVTFDLNRYKE 163
Score = 49.9 bits (119), Expect = 3e-08
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 10/84 (11%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+ +F+ +D G++ E Q N V + + +
Sbjct: 105 NRIPFLFKGMDVSGDGIVDLEEFQNYCKN---FQLQCADVPAVYNVITDGGKVTFDLNRY 161
Query: 67 GALWKYVTDWQSCFKSFDKDNSGN 90
L+ + ++GN
Sbjct: 162 KELYYR-------LLTSPAADAGN 178
Score = 46.1 bits (109), Expect = 7e-07
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 12/109 (11%)
Query: 7 EFLRDIFQRVDRDKSGLISTNE--------LQMALSNGTWKPFNAETVRLMIGMFDKNNT 58
+ RD+ R D +K ++S E + S + + + D +
Sbjct: 60 DEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGD 119
Query: 59 GQISFEDFGALWKYV----TDWQSCFKSFDKDNSGNIDKLELKTALGTF 103
G + E+F K D + + D K
Sbjct: 120 GIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRL 168
Score = 34.5 bits (79), Expect = 0.009
Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 30/123 (24%)
Query: 52 MFDKNNTGQISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT 111
D N+ G I DF + + + N G++ + K+ + ++
Sbjct: 17 FLDMNHDGSIQDNDFEDM----------MTRYKEVNKGSLSDADYKSMQASL-----EDE 61
Query: 112 VDILMKKFDHHGKGTILFDDFIHCCV---------------MLNLLTTSFSQHDEDKDGV 156
L + D + + +++++ N + F D DG+
Sbjct: 62 WRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGI 121
Query: 157 VTL 159
V L
Sbjct: 122 VDL 124
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 63.3 bits (154), Expect = 4e-13
Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 23/167 (13%)
Query: 9 LRDIFQR-VDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF- 66
L++ +++ ++ SG + +E + + V M FD N I F ++
Sbjct: 24 LQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQY-VEAMFRAFDTNGDNTIDFLEYV 82
Query: 67 GALWKYVTDWQS-----CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDH 121
AL + FK +DKD +G ID+ EL + + +V++ ++
Sbjct: 83 AALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGK 142
Query: 122 HGKGTILFDDFIHCCVMLNLLTTSFSQHDEDKDGVVTLHYEQFLSMV 168
+ D F DE+ DG ++ +F+
Sbjct: 143 LLTPEEVVDRI-------------FLLVDENGDGQLS--LNEFVEGA 174
Score = 52.5 bits (126), Expect = 4e-09
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 80 FKSF-DKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVM 138
+K F ++ SG + E K V+ + + FD +G TI F +++ +
Sbjct: 28 YKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNL 87
Query: 139 LNLLTT------SFSQHDEDKDGVVTLHYEQFLSMVFSL 171
+ T +F +D+D++G + ++ L +V S+
Sbjct: 88 VLRGTLEHKLKWTFKIYDKDRNGCID--RQELLDIVESI 124
Score = 26.3 bits (58), Expect = 5.0
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNE-LQMALSN 35
+ P E + IF VD + G +S NE ++ A +
Sbjct: 144 LTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRD 177
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 62.5 bits (152), Expect = 1e-12
Identities = 28/163 (17%), Positives = 49/163 (30%), Gaps = 32/163 (19%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF-- 66
L F +D+ ++G +S + Q P +I F Q++F F
Sbjct: 31 LYSRFTSLDKGENGTLSREDFQRIPELAI-NPLGDR----IINAFFSEGEDQVNFRGFMR 85
Query: 67 --------------------GALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALG-TFGY 105
L F+ +D D I + EL L G
Sbjct: 86 TLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGV 145
Query: 106 RLGDNT----VDILMKKFDHHGKGTILFDDFIHCCVMLNLLTT 144
+ D D +++ D G I F +F+ +++
Sbjct: 146 NISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQK 188
Score = 42.8 bits (101), Expect = 1e-05
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 73 VTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDN-TVDILMKKFDHHGKGTILFDD 131
+T S F S DK +G + + + + L N D ++ F G+ + F
Sbjct: 28 ITRLYSRFTSLDKGENGTLSREDFQRIP-----ELAINPLGDRIINAFFSEGEDQVNFRG 82
Query: 132 FIHCCVMLNLLTTSFSQHDEDKD 154
F+ + + D +
Sbjct: 83 FMRTLAHFRPIEDNEKSKDVNGP 105
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 60.6 bits (147), Expect = 5e-12
Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 19/145 (13%)
Query: 9 LRDIFQRVDRD--KSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
L ++F+++ GLI E Q+AL + N R+ +FD G I F +F
Sbjct: 39 LYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRR-NLFADRIF-DVFDVKRNGVIEFGEF 96
Query: 67 -GALWKYVTDWQS------CFKSFDKDNSGNIDKLELKTAL----GTFGYRLGDNT---- 111
+L + FK +D +G I++ ELK + L ++
Sbjct: 97 VRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVM 156
Query: 112 VDILMKKFDHHGKGTILFDDFIHCC 136
VD + D G I D++
Sbjct: 157 VDKAFVQADRKNDGKIDIDEWKDFV 181
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 59.1 bits (143), Expect = 6e-12
Identities = 16/90 (17%), Positives = 34/90 (37%)
Query: 44 ETVRLMIGMFDKNNTGQISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTF 103
+ ++ + D L + +T ++ + FD +N G ID + LK +
Sbjct: 20 ARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKL 79
Query: 104 GYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
G + ++ + TI + DF+
Sbjct: 80 GVPKTHLEMKKMISEVTGGVSDTISYRDFV 109
Score = 53.7 bits (129), Expect = 7e-10
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
++ + D + G I L+ + + E ++ MI + IS+ DF
Sbjct: 52 FKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLE-MKKMISEVTGGVSDTISYRDFVN 110
Query: 69 L-WKYVTDWQSCFKSFDKDNSGNIDK 93
+ + F+ + + K
Sbjct: 111 MMLGKRSAVLKLVMMFEGKANESSPK 136
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 57.1 bits (139), Expect = 7e-12
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
F FD + +G+ID ELK A+ G+ + + LM ++D G G I FDDF+
Sbjct: 13 FDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFL 66
Score = 46.7 bits (112), Expect = 6e-08
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+++ F D +K+G I +EL++A+ + E + ++ +D+ G I F+DF
Sbjct: 9 IKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPE-ILELMNEYDREGNGYIGFDDF 65
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 56.4 bits (137), Expect = 2e-11
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139
FK D DNSG I ELK L G L ++ + LM D GTI + +FI +
Sbjct: 29 FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIA--ATV 86
Query: 140 N 140
+
Sbjct: 87 H 87
Score = 49.1 bits (118), Expect = 1e-08
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
L+++F+ +D D SG I+ +EL+ L + +E ++ ++ D + +G I + +F
Sbjct: 25 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESE-IKDLMDAADIDKSGTIDYGEF 81
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 56.1 bits (136), Expect = 2e-11
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSN-----GTWKPFNAETVRLMIGMFDKNNTGQISF 63
L F+++D + G ++ ELQ + K E +I M DKN+ G+IS
Sbjct: 9 LEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISK 68
Query: 64 EDF 66
E+F
Sbjct: 69 EEF 71
Score = 44.2 bits (105), Expect = 7e-07
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLG------DNTVDILMKKFDHHGKGTILFDDFI 133
FK D + G + LEL+T + T L+K D + G I ++F+
Sbjct: 13 FKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFL 72
Query: 134 HCCVMLNLL 142
+ LL
Sbjct: 73 N--ANAELL 79
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 54.9 bits (133), Expect = 3e-11
Identities = 12/55 (21%), Positives = 22/55 (40%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
FK D + G + E+K + + + ++ K D G G I ++F
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60
Score = 52.6 bits (127), Expect = 3e-10
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+F+ +D + G +S E++ +S ++L+ D + G+I +F
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQL-LQLIFKSIDADGNGEIDQNEFAK 60
Query: 69 LWK 71
+
Sbjct: 61 FYG 63
Score = 47.9 bits (115), Expect = 2e-08
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 46 VRLMIGMFDKNNTGQISFEDFGALWKYV------TDWQSCFKSFDKDNSGNIDKLELKTA 99
+ D N G +S+E+ A Q FKS D D +G ID+ E
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Query: 100 LGT 102
G+
Sbjct: 62 YGS 64
Score = 30.2 bits (69), Expect = 0.059
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSN 35
L+ IF+ +D D +G I NE +
Sbjct: 38 LQLIFKSIDADGNGEIDQNEFAKFYGS 64
Score = 25.2 bits (56), Expect = 3.8
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 115 LMKKFDHHGKGTILFDDFIHCCVMLNLLTTS------FSQHDEDKDGVVTLHYEQFLSMV 168
L K+ D +G G + +++ + F D D +G + +F
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEID--QNEFAKFY 62
Query: 169 FSLK 172
S++
Sbjct: 63 GSIQ 66
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 54.5 bits (132), Expect = 1e-10
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 79 CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
F FD D G+I EL T + G +D ++++ D G GTI F++F+
Sbjct: 25 AFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFL 79
Score = 46.8 bits (112), Expect = 9e-08
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+ F D D G IST EL + P E + +I D++ +G I FE+F
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEE-LDAIIEEVDEDGSGTIDFEEF 78
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 55.8 bits (135), Expect = 1e-10
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 8/98 (8%)
Query: 44 ETVRLMIGMFDKNNTGQISFEDFGAL-WKYVTDWQS------CFKSFDKDNSGNIDKLEL 96
T + M+ + +ED + + + + F I L
Sbjct: 3 PTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESL 62
Query: 97 KTALGTFGY-RLGDNTVDILMKKFDHHGKGTILFDDFI 133
+ G G + ++++ D G G + +F
Sbjct: 63 RRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFC 100
Score = 48.1 bits (115), Expect = 6e-08
Identities = 10/58 (17%), Positives = 22/58 (37%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
L F + + LI+ L+ + + E + M+ D + G ++ +F
Sbjct: 42 LCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEF 99
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 54.1 bits (131), Expect = 1e-10
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+ F+ D + G+I +E + + +P V + D++ G I +F
Sbjct: 10 ILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEF 67
Score = 47.2 bits (113), Expect = 4e-08
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYR-LGDNTVDILMKKFDHHGKGTILFDDFIH 134
FK FD + G ID E K + G L D V+ MK+ D G G I +F+
Sbjct: 14 FKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMD 69
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 57.1 bits (138), Expect = 1e-10
Identities = 31/156 (19%), Positives = 61/156 (39%), Gaps = 19/156 (12%)
Query: 9 LRDIFQRVDRD--KSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
L ++F+++ GLI+ E Q+AL K + + +FD + G + FE+F
Sbjct: 50 LYELFKKISSAVIDDGLINKEEFQLALFKTNKKE--SLFADRVFDLFDTKHNGILGFEEF 107
Query: 67 -GALWKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDN--------T 111
AL + + F+ +D G I++ E+K + G N
Sbjct: 108 ARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDI 167
Query: 112 VDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFS 147
+D ++ D G I +++ + L + +
Sbjct: 168 IDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMT 203
Score = 26.3 bits (58), Expect = 5.4
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTW 38
+ + F+ D G I E + +
Sbjct: 164 IEDIIDKTFEEADTKHDGKIDKEEWRSLVLRHPS 197
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 54.2 bits (131), Expect = 2e-10
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 42 NAETVRLMIGMFDKNNTGQISFEDFGAL----WKYVTDWQSCFKSFDKDNSGNIDKLELK 97
+AE ++ IG F ++ + F + K D + F DKD SG I++ EL
Sbjct: 7 SAEDIKKAIGAFTAADS--FDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELG 64
Query: 98 TALGTF---GYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
+ L F L LM D G G I ++F
Sbjct: 65 SILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFST 104
Score = 50.0 bits (120), Expect = 7e-09
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWK--PFNAETVRLMIGMFDKNNTGQISFEDF 66
++ +F +D+DKSG I +EL L + +A+ + ++ DK+ G+I E+F
Sbjct: 43 VKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEF 102
Query: 67 GALWK 71
L
Sbjct: 103 STLVA 107
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 54.2 bits (131), Expect = 2e-10
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 6 PEFLRDIFQRVDRDKSGLISTNELQMALSN--GTWKPFNAETVRLMIGMFDKNNTGQISF 63
P+ ++ +F +D+DKSG I ELQ+ L N + + + + + D + G+I
Sbjct: 41 PDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGV 100
Query: 64 EDFGALWK 71
E+F +L K
Sbjct: 101 EEFQSLVK 108
Score = 46.9 bits (112), Expect = 1e-07
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 42 NAETVRLMIGMFDKNNTGQISFEDF----GALWKYVTDWQSCFKSFDKDNSGNIDKLELK 97
+A+ + + +++ F G K + F D+D SG I++ EL+
Sbjct: 8 SAKDIESALSSCQAA--DSFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQ 65
Query: 98 TALGTFGY---RLGDNTVDILMKKFDHHGKGTILFDDFIH 134
L F L + D G G I ++F
Sbjct: 66 LFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQS 105
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 53.5 bits (129), Expect = 2e-10
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
LR +F D ++SG + E + + + D + G I+F++F
Sbjct: 29 LRSVFAACDANRSGRLEREEFRALCTE---LRVRPADAEAVFQRLDADRDGAITFQEF 83
Score = 49.3 bits (118), Expect = 9e-09
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
F + D + SG +++ E + + + + ++ D G I F +F
Sbjct: 33 FAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAITFQEFA 84
Score = 36.2 bits (84), Expect = 7e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 52 MFDKNNTGQISFEDFGALWKYV----TDWQSCFKSFDKDNSGNID 92
D N +G++ E+F AL + D ++ F+ D D G I
Sbjct: 35 ACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAIT 79
Score = 30.8 bits (70), Expect = 0.051
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 115 LMKKFDHHGKGTILFDDFIHCCVMLNL----LTTSFSQHDEDKDGVVTLHYEQFLSM 167
+ D + G + ++F C L + F + D D+DG +T +++F
Sbjct: 32 VFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAIT--FQEFARG 86
Score = 28.5 bits (64), Expect = 0.37
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNE 28
P +FQR+D D+ G I+ E
Sbjct: 59 RPADAEAVFQRLDADRDGAITFQE 82
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 52.9 bits (128), Expect = 3e-10
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHC 135
F+ FDK+ G + E + F + ++ D G G + D+F C
Sbjct: 7 FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62
Score = 48.3 bits (116), Expect = 1e-08
Identities = 9/63 (14%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+ +F++ D++K G +S +E + + + + D + G+++ ++F +
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQED-IVKFFEEIDVDGNGELNADEFTS 61
Query: 69 LWK 71
+
Sbjct: 62 CIE 64
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 54.9 bits (132), Expect = 3e-10
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
E + + D + +G I L+ L + E ++ +I + S+ DF
Sbjct: 48 EAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLE-LKRLIREVSSGSEETFSYSDF 106
Query: 67 GAL-WKYVTDWQSCFKSFDKDNSG 89
+ + +++ N
Sbjct: 107 LRMMLGKRSAILRMILMYEEKNKE 130
Score = 54.9 bits (132), Expect = 3e-10
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 49 MIGMFDKNNTGQISFEDFGA---LWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGY 105
+ N + + L + ++ + FD + +G+ID + LK L G
Sbjct: 20 QEERLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGV 79
Query: 106 RLGDNTVDILMKKFDHHGKGTILFDDFIHC 135
+ L+++ + T + DF+
Sbjct: 80 PKTHLELKRLIREVSSGSEETFSYSDFLRM 109
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 53.0 bits (128), Expect = 4e-10
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 79 CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
F+ FDKDN + EL T + G + ++K +D G + F+
Sbjct: 19 AFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFL 73
Score = 49.2 bits (118), Expect = 1e-08
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
++ FQ D+D ++ EL + P + + ++ +DK+N+G+ E F
Sbjct: 16 YKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQK-ISEIVKDYDKDNSGKFDQETF 72
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 54.8 bits (132), Expect = 6e-10
Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 25/157 (15%)
Query: 17 DRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF-GALWKYVTD 75
SG +S E + N ++ + FD N G I F +F AL
Sbjct: 36 RDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRG 95
Query: 76 W-----QSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT------------VDILMKK 118
+ F +D D +G I K E+ + + + + ++
Sbjct: 96 KLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQ 155
Query: 119 FDHHGKGTILFDDFIHCCV-------MLNLLTTSFSQ 148
D + G + ++FI +L +S Q
Sbjct: 156 MDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQ 192
Score = 48.7 bits (116), Expect = 1e-07
Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 27/150 (18%)
Query: 44 ETVRLMIGMFDKNNTGQISFEDFGALWKYVTD-------WQSCFKSFDKDNSGNIDKLEL 96
E G +G +S E+F ++ + F++FD + G ID E
Sbjct: 26 EIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREF 85
Query: 97 KTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTS----------- 145
AL + + +D G G I + + + + +S
Sbjct: 86 IIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTP 145
Query: 146 -------FSQHDEDKDGVVTLHYEQFLSMV 168
F Q D ++DG ++ E+F+
Sbjct: 146 EKRTEKIFRQMDTNRDGKLS--LEEFIRGA 173
Score = 33.7 bits (77), Expect = 0.015
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNA-----------ETVRLMIG 51
+ L+ F D D +G IS E+ + + + +
Sbjct: 95 GKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFR 154
Query: 52 MFDKNNTGQISFEDF 66
D N G++S E+F
Sbjct: 155 QMDTNRDGKLSLEEF 169
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 54.4 bits (131), Expect = 6e-10
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 22/154 (14%)
Query: 17 DRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF--------GA 68
SG ++ +E Q + + +FD + G I F++F
Sbjct: 36 KDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRG 95
Query: 69 LWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT------------VDILM 116
W F+ +D DN+G I E+ + +G V+ +
Sbjct: 96 ELNDKLIW--AFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIF 153
Query: 117 KKFDHHGKGTILFDDFIHCCVMLNLLTTSFSQHD 150
D + G + ++F + ++ S +D
Sbjct: 154 NMMDKNKDGQLTLEEFCEGSKRDPTIVSALSLYD 187
Score = 44.8 bits (106), Expect = 2e-06
Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 27/150 (18%)
Query: 44 ETVRLMIGMFDKNNTGQISFEDF-------GALWKYVTDWQSCFKSFDKDNSGNIDKLEL 96
E + G F +G ++ +F + F FD D +G ID E
Sbjct: 26 ELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEF 85
Query: 97 KTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTS----------- 145
AL ++ + + +D G I +D+ + + + S
Sbjct: 86 ICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTP 145
Query: 146 -------FSQHDEDKDGVVTLHYEQFLSMV 168
F+ D++KDG +T E+F
Sbjct: 146 EKRVNKIFNMMDKNKDGQLT--LEEFCEGS 173
Score = 34.0 bits (78), Expect = 0.013
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNELQMAL-----SNGTWKPFNA------ETVRLMIG 51
+ L FQ D D +GLIS +E+ + G+ + V +
Sbjct: 95 GELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFN 154
Query: 52 MFDKNNTGQISFEDF 66
M DKN GQ++ E+F
Sbjct: 155 MMDKNKDGQLTLEEF 169
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 52.4 bits (126), Expect = 9e-10
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 79 CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
+ FD + +G+ID + LK L G + L+ + T + DF+
Sbjct: 37 KYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFL 91
Score = 48.1 bits (115), Expect = 4e-08
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
++ + D + +G I L+ L + E ++ +IG + S+ DF
Sbjct: 34 FKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLE-LKKLIGEVSSGSGETFSYPDF 90
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 52.3 bits (126), Expect = 1e-09
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 42 NAETVRLMIGMFDKNNTGQISFEDFGALW----KYVTDWQSCFKSFDKDNSGNIDKLELK 97
+AE + + +T + F + + F+ D D SG +D ELK
Sbjct: 7 SAEDIAAALQECQDPDT--FEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELK 64
Query: 98 TAL---GTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
L + L ++ LM D+ G G I D+F
Sbjct: 65 YFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQE 104
Score = 50.0 bits (120), Expect = 8e-09
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSN--GTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
++DIF+ +D D+SG + +EL+ L + + ++ D + G+I ++F
Sbjct: 43 VKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEF 102
Query: 67 GAL 69
+
Sbjct: 103 QEM 105
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 52.3 bits (126), Expect = 1e-09
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 6 PEFLRDIFQRVDRDKSGLISTNELQMALSNGTW--KPFNAETVRLMIGMFDKNNTGQISF 63
+ ++ F +D+DKSG I +EL++ L + + + + D + G I
Sbjct: 41 ADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGV 100
Query: 64 EDFGAL 69
+++ AL
Sbjct: 101 DEWAAL 106
Score = 51.5 bits (124), Expect = 2e-09
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 42 NAETVRLMIGMFDKNNTGQISFEDF----GALWKYVTDWQSCFKSFDKDNSGNIDKLELK 97
V + + +++ F G K D + F D+D SG I++ ELK
Sbjct: 8 ADADVAAALKACEAA--DSFNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELK 65
Query: 98 TALGTF---GYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
L F L D +K D G G I D++
Sbjct: 66 LFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAA 105
Score = 28.8 bits (65), Expect = 0.35
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 103 FGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNL----LTTSFSQHDEDKDGVVT 158
F L D V +K + + + F + + +F D+DK G +
Sbjct: 3 FSGILADADVAAALKACE--AADSFNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIE 60
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 51.8 bits (125), Expect = 2e-09
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 6 PEFLRDIFQRVDRDKSGLISTNELQMALSN--GTWKPFNAETVRLMIGMFDKNNTGQISF 63
+ ++ F +D+DKSG I +EL++ L N + + + + DK+ G I
Sbjct: 40 LDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGV 99
Query: 64 EDFGAL 69
++F A+
Sbjct: 100 DEFAAM 105
Score = 47.6 bits (114), Expect = 5e-08
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 9/99 (9%)
Query: 42 NAETVRLMIGMFDKNNTGQISFEDF----GALWKYVTDWQSCFKSFDKDNSGNIDKLELK 97
V + ++ ++F G K + D + F D+D SG I++ ELK
Sbjct: 7 KDADVAAALAACSAADS--FKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELK 64
Query: 98 TALGTF---GYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
L F L D + D G G I D+F
Sbjct: 65 LFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFA 103
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 51.1 bits (123), Expect = 2e-09
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
FK FDKD +G I EL+ + G +L D V+ ++K+ D G G + +++F+
Sbjct: 15 FKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVK 69
Score = 49.5 bits (119), Expect = 7e-09
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
L++ F+ D+D++G IS +EL+ + N K E V MI D + GQ+++E+F
Sbjct: 11 LKEAFKVFDKDQNGYISASELRHVMINLGEKL-TDEEVEQMIKEADLDGDGQVNYEEF 67
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 50.6 bits (122), Expect = 2e-09
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
F++FD+D G+I EL+ A+ G L +D ++++ D G + +++F
Sbjct: 12 FRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFA 65
Score = 49.4 bits (119), Expect = 5e-09
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
L+ F+ D+D G I+ +EL+ A++ E + MI D + G++++E+F
Sbjct: 8 LQVAFRAFDQDGDGHITVDELRRAMAGLGQPL-PQEELDAMIREADVDQDGRVNYEEF 64
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 52.9 bits (127), Expect = 2e-09
Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 18/152 (11%)
Query: 17 DRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKYVTDW 76
SG ++ + + + +FDK+N G I FE+F + +
Sbjct: 36 RDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRG 95
Query: 77 ------QSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT------------VDILMKK 118
F+ +D ++ G I E+ T + + +G V + K
Sbjct: 96 TLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKL 155
Query: 119 FDHHGKGTILFDDFIHCCVMLNLLTTSFSQHD 150
D + G I D+F + + + + +D
Sbjct: 156 MDKNEDGYITLDEFREGSKVDPSIIGALNLYD 187
Score = 42.1 bits (99), Expect = 2e-05
Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 27/151 (17%)
Query: 43 AETVRLMIGMFDKNNTGQISFEDFGALWKYVTD-------WQSCFKSFDKDNSGNIDKLE 95
E + G +GQ++ EDF ++K F FDKDN+G I E
Sbjct: 25 REIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEE 84
Query: 96 LKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTS---------- 145
T L T + + + +D + G I FD+ + + + S
Sbjct: 85 FITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEAT 144
Query: 146 --------FSQHDEDKDGVVTLHYEQFLSMV 168
F D+++DG +T ++F
Sbjct: 145 PEMRVKKIFKLMDKNEDGYIT--LDEFREGS 173
Score = 33.7 bits (77), Expect = 0.015
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 4 PPPEFLRDIFQRVDRDKSGLISTNELQMAL-------SNGTWKPFNAET----VRLMIGM 52
E L F+ D + G I+ +E+ + + + T V+ + +
Sbjct: 96 TLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKL 155
Query: 53 FDKNNTGQISFEDF 66
DKN G I+ ++F
Sbjct: 156 MDKNEDGYITLDEF 169
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 51.5 bits (124), Expect = 2e-09
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKP--FNAETVRLMIGMFDKNNTGQISFEDF 66
L++IF+ +D D+SG I +EL+ L A + + D + G+I E+F
Sbjct: 43 LKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEF 102
Query: 67 GAL 69
+
Sbjct: 103 QEM 105
Score = 51.1 bits (123), Expect = 3e-09
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 42 NAETVRLMIGMFDKNNTGQISFEDFGAL----WKYVTDWQSCFKSFDKDNSGNIDKLELK 97
+ + + ++ S + F + K + + F+ D D SG I++ ELK
Sbjct: 7 SPSDIAAALRDCQAPDS--FSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELK 64
Query: 98 TALGTFGY---RLGDNTVDILMKKFDHHGKGTILFDDFIH 134
L F L + + DH G G I ++F
Sbjct: 65 YFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQE 104
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 53.1 bits (127), Expect = 2e-09
Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 21/149 (14%)
Query: 9 LRDIFQR-VDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFG 67
L +Q + +G I+ + Q + + + FD N G + F+++
Sbjct: 35 LCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYV 94
Query: 68 ALWKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT---------- 111
T ++ F +D D +G I K E+ + +
Sbjct: 95 IALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENT 154
Query: 112 ----VDILMKKFDHHGKGTILFDDFIHCC 136
+ + K F + + +FI
Sbjct: 155 PEKRAEKIWKYFGKNDDDKLTEKEFIEGT 183
Score = 48.8 bits (116), Expect = 1e-07
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 29/152 (19%)
Query: 44 ETVRLMIGMFDKNNTGQISFEDFGALWKYVTDW-------QSCFKSFDKDNSGNIDKLEL 96
E TG+I+ + F +++ Q F+SFD + G +D E
Sbjct: 34 ELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEY 93
Query: 97 KTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTS----------- 145
AL + ++ +D G GTI ++ + + + + T
Sbjct: 94 VIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDEN 153
Query: 146 ---------FSQHDEDKDGVVTLHYEQFLSMV 168
+ ++ D +T ++F+
Sbjct: 154 TPEKRAEKIWKYFGKNDDDKLT--EKEFIEGT 183
Score = 31.1 bits (70), Expect = 0.14
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNELQ---------MALSNGTWKPFNAET----VRLM 49
+ L F D D +G IS NE+ + + P + T +
Sbjct: 103 GKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKI 162
Query: 50 IGMFDKNNTGQISFEDF 66
F KN+ +++ ++F
Sbjct: 163 WKYFGKNDDDKLTEKEF 179
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 50.3 bits (121), Expect = 3e-09
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSN-GTWKPFNAETVRLMIGMFDKNNTGQISFEDFG 67
+ IF+R D + G IS +EL AL G+ + V+ M+ D + G I F +F
Sbjct: 5 MERIFKRFDTNGDGKISLSELTDALRTLGSTSA---DEVQRMMAEIDTDGDGFIDFNEFI 61
Query: 68 AL 69
+
Sbjct: 62 SF 63
Score = 46.8 bits (112), Expect = 6e-08
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
FK FD + G I EL AL T G D V +M + D G G I F++FI
Sbjct: 9 FKRFDTNGDGKISLSELTDALRTLGSTSAD-EVQRMMAEIDTDGDGFIDFNEFI 61
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 51.0 bits (123), Expect = 3e-09
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 42 NAETVRLMIGMFDKNNTGQISFEDFGAL----WKYVTDWQSCFKSFDKDNSGNIDKLELK 97
A+ ++ + G + + F AL D + FK+ D D SG I++ ELK
Sbjct: 8 KADDIKKALDAVKAE--GSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELK 65
Query: 98 TALGTF---GYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
L +F G L D +K D G G I D+F
Sbjct: 66 FVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFE 104
Score = 50.3 bits (121), Expect = 6e-09
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 1 MAMPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWK--PFNAETVRLMIGMFDKNNT 58
+ ++ +F+ +D D SG I EL+ L + + + DK+
Sbjct: 36 LKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGD 95
Query: 59 GQISFEDFGAL 69
G+I ++F L
Sbjct: 96 GKIGIDEFETL 106
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 50.7 bits (122), Expect = 3e-09
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 57 NTGQISFEDFGALWKYVTDWQS------CFKSFDKDNSGNIDKLELKTALGTFGYRLGDN 110
+ S + + D S F+ DKD +G I EL+ + G +L D
Sbjct: 6 HHHHGSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDE 65
Query: 111 TVDILMKKFDHHGKGTILFDDFIH 134
VD ++++ D G G + +++F+
Sbjct: 66 EVDEMIREADIDGDGQVNYEEFVQ 89
Score = 49.6 bits (119), Expect = 9e-09
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+R+ F+ D+D +G IS EL+ ++N K + E V MI D + GQ+++E+F
Sbjct: 31 IREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEE-VDEMIREADIDGDGQVNYEEF 87
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 49.9 bits (120), Expect = 8e-09
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 2 AMPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWK--PFNAETVRLMIGMFDKNNTG 59
++++F+ +D+D+SG I EL+ L + N + ++ D ++ G
Sbjct: 36 KGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDG 95
Query: 60 QISFEDFGAL 69
+I ++F +
Sbjct: 96 KIGADEFAKM 105
Score = 47.2 bits (113), Expect = 1e-07
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 42 NAETVRLMIGMFDKNNTGQISFEDFGALWKYVTDWQS----CFKSFDKDNSGNIDKLELK 97
A+ + I F G ++ F L + F+ DKD SG I++ ELK
Sbjct: 7 KADDINKAISAFKDP--GTFDYKRFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELK 64
Query: 98 TALGTF---GYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
L F G L D L+ D G I D+F
Sbjct: 65 GVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFA 103
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 51.0 bits (122), Expect = 1e-08
Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 20/162 (12%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+ F SG + Q + + +FD+N G+I F +F
Sbjct: 28 QQWYKGFI--KDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEF 85
Query: 67 GALWKYVTD------WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT--------- 111
+ + FK +D DN G I + E+ + +G+
Sbjct: 86 IQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTP 145
Query: 112 ---VDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFSQHD 150
VD + D + G + +F + + S +D
Sbjct: 146 EKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALSLYD 187
Score = 40.6 bits (95), Expect = 6e-05
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 21/136 (15%)
Query: 51 GMFDKNNTGQISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDN 110
G D +I ++ F F FD++ G I+ E AL D
Sbjct: 41 GQLDAAGFQKI-YKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDE 99
Query: 111 TVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTS------------------FSQHDED 152
+ K +D G I ++ + + + + F+ D++
Sbjct: 100 KLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKN 159
Query: 153 KDGVVTLHYEQFLSMV 168
DG +T ++F
Sbjct: 160 ADGKLT--LQEFQEGS 173
Score = 31.7 bits (72), Expect = 0.078
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNA-----------ETVRLMIG 51
E LR F+ D D G I+ NE+ + N + V +
Sbjct: 95 GTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFA 154
Query: 52 MFDKNNTGQISFEDF 66
M DKN G+++ ++F
Sbjct: 155 MMDKNADGKLTLQEF 169
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 48.4 bits (116), Expect = 2e-08
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
FK FD + G I EL AL T G + + V +M + D G G I FD+F
Sbjct: 17 FKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISFDEFT 69
Score = 47.6 bits (114), Expect = 4e-08
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMA---LSNGTWKPFNAETVRLMIGMFDKNNTGQISFED 65
IF+R D + G IS++EL A L + T + VR M+ D + G ISF++
Sbjct: 13 RERIFKRFDTNGDGKISSSELGDALKTLGSVT-----PDEVRRMMAEIDTDGDGFISFDE 67
Query: 66 FGAL 69
F
Sbjct: 68 FTDF 71
Score = 31.8 bits (73), Expect = 0.020
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 52 MFDKNNTGQISFEDFGALWKYV-----TDWQSCFKSFDKDNSGNID 92
FD N G+IS + G K + + + D D G I
Sbjct: 19 RFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFIS 64
Score = 25.3 bits (56), Expect = 4.9
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNE-LQMALSNG 36
P+ +R + +D D G IS +E A +N
Sbjct: 42 SVTPDEVRRMMAEIDTDGDGFISFDEFTDFARANR 76
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 50.7 bits (121), Expect = 2e-08
Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 18/150 (12%)
Query: 19 DKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF-GALWKYVTD-- 75
SG+++ + + + + FD TG + FEDF AL +
Sbjct: 64 CPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTV 123
Query: 76 ---WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT------------VDILMKKFD 120
+ F +D + G I+K E+ + +G T VD+ +K D
Sbjct: 124 HEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMD 183
Query: 121 HHGKGTILFDDFIHCCVMLNLLTTSFSQHD 150
+ G + D+F+ C + + S
Sbjct: 184 KNKDGIVTLDEFLESCQEDDNIMRSLQLFQ 213
Score = 40.7 bits (95), Expect = 6e-05
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 20/107 (18%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139
F +FD +G++ + TAL + +D + G I ++ + +
Sbjct: 95 FNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 154
Query: 140 NLLTTS------------------FSQHDEDKDGVVTLHYEQFLSMV 168
+ F + D++KDG+VT ++FL
Sbjct: 155 YDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVT--LDEFLESC 199
Score = 35.0 bits (80), Expect = 0.006
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNELQMAL-------SNGTWKPFNAETVRL----MIG 51
E LR F D +K G I+ E+ + T+ +T R
Sbjct: 121 GTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQ 180
Query: 52 MFDKNNTGQISFEDF 66
DKN G ++ ++F
Sbjct: 181 KMDKNKDGIVTLDEF 195
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 49.8 bits (119), Expect = 3e-08
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 18/133 (13%)
Query: 20 KSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF-GALWKYVTDWQS 78
SG+++ + + + + FD TG + FEDF AL +
Sbjct: 32 PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVH 91
Query: 79 -----CFKSFDKDNSGNIDKLELKTALGTFGYRLGDNT------------VDILMKKFDH 121
F +D + G I+K E+ + +G T VD+ +K D
Sbjct: 92 EKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDK 151
Query: 122 HGKGTILFDDFIH 134
+ G + D+F+
Sbjct: 152 NKDGIVTLDEFLE 164
Score = 43.3 bits (102), Expect = 7e-06
Identities = 24/153 (15%), Positives = 54/153 (35%), Gaps = 28/153 (18%)
Query: 41 FNAETVRLMIGMF-DKNNTGQISFEDFGALWKYVTDW-------QSCFKSFDKDNSGNID 92
F ++++ F ++ +G ++ E F ++ F +FD +G++
Sbjct: 15 FTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVK 74
Query: 93 KLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTS------- 145
+ TAL + +D + G I ++ + + +
Sbjct: 75 FEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLK 134
Query: 146 -----------FSQHDEDKDGVVTLHYEQFLSM 167
F + D++KDG+VT ++FL
Sbjct: 135 EDTPRQHVDVFFQKMDKNKDGIVT--LDEFLES 165
Score = 34.8 bits (80), Expect = 0.006
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNELQ-------MALSNGTWKPFNAETVRL----MIG 51
E LR F D +K G I+ E+ + T+ +T R
Sbjct: 88 GTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQ 147
Query: 52 MFDKNNTGQISFEDF 66
DKN G ++ ++F
Sbjct: 148 KMDKNKDGIVTLDEF 162
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 47.1 bits (112), Expect = 3e-07
Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 22/154 (14%)
Query: 11 DIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKN-NTGQISFEDFGAL 69
+ V+ + ++ ++L PF + +F + +SFEDF L
Sbjct: 32 QEQRSVESSLRAQVPFEQI-LSLPELKANPFKER----ICRVFSTSPAKDSLSFEDFLDL 86
Query: 70 WKYVTDWQS-------CFKSFDKDNSGNIDKLELKTAL-----GTFGYRLGDNT----VD 113
+D + F+ FD D+ G +++ +L + RL + +D
Sbjct: 87 LSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLID 146
Query: 114 ILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFS 147
++++ D GTI +F H +SF
Sbjct: 147 NILEESDIDRDGTINLSEFQHVISRSPDFASSFK 180
Score = 35.9 bits (83), Expect = 0.002
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 4 PPPEFLRDIFQRVDRDKSGLISTNEL----QMALSNGTWKPFNAETVRL----MIGMFDK 55
P F+ D D G ++ +L G +A ++ ++ D
Sbjct: 95 TPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDI 154
Query: 56 NNTGQISFEDF 66
+ G I+ +F
Sbjct: 155 DRDGTINLSEF 165
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 44.9 bits (107), Expect = 3e-07
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 3 MPPPEFLRDIFQRVDRD--KSGLISTNELQMALSN-GTWKPFNAETVRLMIGMFDKNNTG 59
M PE ++ F+ IS EL++ + G T+ MI DKN G
Sbjct: 1 MKSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDG 60
Query: 60 QISFEDF 66
++SFE+F
Sbjct: 61 EVSFEEF 67
Score = 41.1 bits (97), Expect = 9e-06
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 79 CFKSFDKD--NSGNIDKLELKTALGTFGYRLGDN--TVDILMKKFDHHGKGTILFDDFI 133
F+ F + I K ELK + T G L T+D ++++ D +G G + F++F+
Sbjct: 10 AFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFL 68
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 45.3 bits (107), Expect = 2e-06
Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 19/132 (14%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFE 64
+ +F D D +G +S + LS E + ++D N G I+ E
Sbjct: 100 STTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQ-EKLNWAFNLYDINKDGYITKE 158
Query: 65 DFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGK 124
+ + K + + K + + + V+ +K D +
Sbjct: 159 EMLDIMK------AIYDMMGKCTYPVLKEDAPR------------QHVETFFQKMDKNKD 200
Query: 125 GTILFDDFIHCC 136
G + D+FI C
Sbjct: 201 GVVTIDEFIESC 212
Score = 45.3 bits (107), Expect = 2e-06
Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 28/154 (18%)
Query: 41 FNAETVRLMIGMF-DKNNTGQISFEDFGALWKYVTD-------WQSCFKSFDKDNSGNID 92
F + ++++ F ++ +G ++ E F ++ F +FD D++G +
Sbjct: 61 FTKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVS 120
Query: 93 KLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTS------- 145
+ L ++ +D + G I ++ + + +
Sbjct: 121 FEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLK 180
Query: 146 -----------FSQHDEDKDGVVTLHYEQFLSMV 168
F + D++KDGVVT ++F+
Sbjct: 181 EDAPRQHVETFFQKMDKNKDGVVT--IDEFIESC 212
Score = 34.5 bits (79), Expect = 0.009
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNELQMAL-------SNGTWKPFNAETVRL----MIG 51
E L F D +K G I+ E+ + T+ + R
Sbjct: 134 GTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQ 193
Query: 52 MFDKNNTGQISFEDF 66
DKN G ++ ++F
Sbjct: 194 KMDKNKDGVVTIDEF 208
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 44.9 bits (106), Expect = 2e-06
Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 22/158 (13%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNN-TGQISFED 65
E L + V+ + ++ ++L PF + +F + +SFED
Sbjct: 59 ELLPQEQRSVESSLRAQVPFEQI-LSLPELKANPF----KERICRVFSTSPAKDSLSFED 113
Query: 66 FGALWKYVTDWQS-------CFKSFDKDNSGNIDKLELKTAL-----GTFGYRLGDNT-- 111
F L +D + F+ FD D+ G +++ +L + RL +
Sbjct: 114 FLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMK 173
Query: 112 --VDILMKKFDHHGKGTILFDDFIHCCVMLNLLTTSFS 147
+D ++++ D GTI +F H +SF
Sbjct: 174 QLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSFK 211
Score = 34.5 bits (79), Expect = 0.010
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 4 PPPEFLRDIFQRVDRDKSGLISTNEL----QMALSNGTWKPFNAETVRL----MIGMFDK 55
P F+ D D G ++ +L G +A ++ ++ D
Sbjct: 126 TPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDI 185
Query: 56 NNTGQISFEDF 66
+ G I+ +F
Sbjct: 186 DRDGTINLSEF 196
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 43.9 bits (103), Expect = 6e-06
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 19/130 (14%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+ +F D D +G I + + LS + E ++ ++D N G I+ E+
Sbjct: 129 TYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVH-EKLKWAFNLYDINKDGCITKEEM 187
Query: 67 GALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGT 126
A+ K S + + + + V+ +K D + G
Sbjct: 188 LAIMK------SIYDMMGRHTYPILREDAPL------------EHVERFFQKMDRNQDGV 229
Query: 127 ILFDDFIHCC 136
+ D+F+ C
Sbjct: 230 VTIDEFLETC 239
Score = 41.2 bits (96), Expect = 5e-05
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 60 QISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKF 119
++ + F T F +FD D +G I + L + +
Sbjct: 115 KLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLY 174
Query: 120 DHHGKGTILFDDFIHCCVMLNLLTTS------------------FSQHDEDKDGVVTLHY 161
D + G I ++ + + + F + D ++DGVVT
Sbjct: 175 DINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVT--I 232
Query: 162 EQFLSMV 168
++FL
Sbjct: 233 DEFLETC 239
Score = 37.3 bits (86), Expect = 0.001
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNELQMAL-------SNGTWKPFNAETVRL----MIG 51
E L+ F D +K G I+ E+ + T+ +
Sbjct: 161 GTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQ 220
Query: 52 MFDKNNTGQISFEDF 66
D+N G ++ ++F
Sbjct: 221 KMDRNQDGVVTIDEF 235
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 40.7 bits (96), Expect = 1e-04
Identities = 18/133 (13%), Positives = 31/133 (23%), Gaps = 21/133 (15%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
E ++ Q ++ +G E + + F E N + F F
Sbjct: 319 EIIKVTEQLIEAISNGDF---ESYTKMCDPGMTAFEPEA--------LGNLVEGLDFHRF 367
Query: 67 GA---LWKYVTDWQSC----FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKF 119
+ + D S I + + L G T +
Sbjct: 368 YFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGI---PRTAQSEETRV 424
Query: 120 DHHGKGTILFDDF 132
H G F
Sbjct: 425 WHRRDGKWQIVHF 437
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme
delta1; phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 39.5 bits (91), Expect = 3e-04
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
+ ++ D++K ++ EL+ L + R + D + T + E+
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELN-IQVDDGYARKIFRECDHSQTDSLEDEEIET 71
Query: 69 LWKYVT 74
+K +T
Sbjct: 72 FYKMLT 77
Score = 39.1 bits (90), Expect = 4e-04
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 76 WQ-SCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
W SC + DK+ ++ ELK L ++ D + ++ DH ++ ++
Sbjct: 12 WIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIET 71
Query: 135 CCVML---NLLTTSFSQHDEDKDGVVTLHYEQFL 165
ML + +F + + + FL
Sbjct: 72 FYKMLTQRAEIDRAFEEAAGSAETLSVERLVTFL 105
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 36.2 bits (84), Expect = 8e-04
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 76 WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHC 135
+ F DKD G + LE++ L + + D G + D F
Sbjct: 12 YDEIFLKTDKDMDGFVSGLEVREIFLK--TGLPSTLLAHIWSLCDTKDCGKLSKDQFALA 69
Query: 136 C 136
Sbjct: 70 F 70
Score = 34.7 bits (80), Expect = 0.003
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 2 AMPPPE--FLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTG 59
+ P E +IF + D+D G +S E++ + + + + D + G
Sbjct: 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG---LPSTLLAHIWSLCDTKDCG 59
Query: 60 QISFEDF 66
++S + F
Sbjct: 60 KLSKDQF 66
Score = 26.2 bits (58), Expect = 2.8
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMAL 33
P L I+ D G +S ++ +A
Sbjct: 42 PSTLLAHIWSLCDTKDCGKLSKDQFALAF 70
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 36.3 bits (84), Expect = 0.001
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 76 WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHC 135
++ F S DK SG++ + +T L L + + D G + ++FI
Sbjct: 16 YRQLFNSHDKTMSGHLTGPQARTILMQ--SSLPQAQLASIWNLSDIDQDGKLTAEEFILA 73
Query: 136 C 136
Sbjct: 74 M 74
Score = 35.9 bits (83), Expect = 0.001
Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 2 AMPPPEFLR--DIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTG 59
A+P L+ +F D+ SG ++ + + L + + + + D + G
Sbjct: 7 AVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS---LPQAQLASIWNLSDIDQDG 63
Query: 60 QISFEDF 66
+++ E+F
Sbjct: 64 KLTAEEF 70
Score = 27.0 bits (60), Expect = 1.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 5 PPEFLRDIFQRVDRDKSGLISTNELQMAL 33
P L I+ D D+ G ++ E +A+
Sbjct: 46 PQAQLASIWNLSDIDQDGKLTAEEFILAM 74
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 35.9 bits (83), Expect = 0.001
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 76 WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHC 135
+ + FK+ D +G I K L + + + D G + D+F
Sbjct: 11 YVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALTLDEFCAA 68
Query: 136 C 136
Sbjct: 69 F 69
Score = 33.2 bits (76), Expect = 0.010
Identities = 7/57 (12%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 10 RDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
+ F+ + D +G I + + + + + + D + G ++ ++F
Sbjct: 12 VNQFKTIQPDLNGFIPGSAAKEFFTKSK---LPILELSHIWELSDFDKDGALTLDEF 65
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 35.5 bits (82), Expect = 0.002
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 7 EFLRDIFQRVDRDKSGLISTNEL----QMALSNGTWKPFNAETVRLMIGMFDKNNTGQIS 62
E + F + DK G ++ +L + + V ++ D+ G++
Sbjct: 9 ETMMFTFHKFAGDK-GYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVG 67
Query: 63 FEDFGALWKYVTDWQSCFKSFDKDN 87
F+ F +L +T +C F
Sbjct: 68 FQSFFSLIAGLT--IACNDYFVVHM 90
Score = 30.9 bits (70), Expect = 0.052
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 78 SCFKSFDKDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDF 132
F F D G + K +L+ + + VD +MK D G + F F
Sbjct: 13 FTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSF 71
Query: 133 IHCCVMLNLLTTSFSQHDEDKDG 155
L + + + G
Sbjct: 72 FSLIAGLTIACNDYFVVHMKQKG 94
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 36.2 bits (83), Expect = 0.002
Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 17/134 (12%)
Query: 13 FQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGALWKY 72
F ++ D G++ + + F + + ++ ++ ++
Sbjct: 34 FNQLQVD--GVLLRSRFGKCIGMDGSDEFAVQMFDSLAR-KRGIVKQVLTKDELKDFYEQ 90
Query: 73 VTD------WQSCFKSFDKDNSGNIDKLELKTAL--------GTFGYRLGDNTVDILMKK 118
+TD ++ F DK+ G + E+K + + D ++M++
Sbjct: 91 LTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEE 150
Query: 119 FDHHGKGTILFDDF 132
D G I +D
Sbjct: 151 LDPTNLGYIEMEDL 164
Score = 32.7 bits (74), Expect = 0.029
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 18/112 (16%)
Query: 6 PEFLRDIFQRVDRDK---SGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQIS 62
EF +F + R + +++ +EL+ T + F+ +R M DKN G+++
Sbjct: 58 DEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFD-NRLRTFFDMVDKNADGRLT 116
Query: 63 FEDFGALWKYVTDWQSC--------------FKSFDKDNSGNIDKLELKTAL 100
E+ + + D N G I+ +L+ L
Sbjct: 117 AEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALL 168
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 35.2 bits (81), Expect = 0.002
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMAL----SNGTWKPFNAETVRLMIGMFDKNNTGQ 60
E L ++F +S EL+ L S+ +A+ V ++ D+N G+
Sbjct: 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGE 68
Query: 61 ISFEDFGALWKYVTDWQSCFKSFDKDN 87
+ F++F L +T +C F +++
Sbjct: 69 VDFQEFVVLVAALT--VACNNFFWENS 93
Score = 30.1 bits (68), Expect = 0.11
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 82 SFDKDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
S + + + K ELK L T + + VD +MK+ D +G G + F +F+
Sbjct: 19 SGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFV 75
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 35.7 bits (82), Expect = 0.002
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 3 MPPPEFLRDIFQRVDRDKSGLISTNELQMALS-------NGTWKPFNAETVRLMI----G 51
M P E F+ D D + L+ EL A++ + + + + +I
Sbjct: 64 MSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLR 123
Query: 52 MFDKNNTGQISFEDF 66
DKNN G I + +F
Sbjct: 124 DDDKNNDGYIDYAEF 138
Score = 35.3 bits (81), Expect = 0.003
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 20/89 (22%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139
FK D D + +D LEL TA+ + K+ + D+ I
Sbjct: 74 FKMHDYDGNNLLDGLELSTAI------------THVHKEEGSEQAPLMSEDELI------ 115
Query: 140 NLLTTSFSQHDEDKDGVVTLHYEQFLSMV 168
N++ D++ DG + Y +F +
Sbjct: 116 NIIDGVLRDDDKNNDGYID--YAEFAKSL 142
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 34.8 bits (80), Expect = 0.003
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 77 QSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCC 136
+ ++ + N+G + L+ L G L D + + D GKG + +F
Sbjct: 14 EKYYRQVEAGNTGRVLALDAAAFLKKSG--LPDLILGKIWDLADTDGKGVLSKQEFFVAL 71
Query: 137 VMLNL 141
++
Sbjct: 72 RLVAC 76
Score = 33.2 bits (76), Expect = 0.010
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 10 RDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGAL 69
+++V+ +G + + L + + + D + G +S ++F
Sbjct: 14 EKYYRQVEAGNTGRVLALDAAAFLKKSG---LPDLILGKIWDLADTDGKGVLSKQEFFVA 70
Query: 70 WKYVTDWQS 78
+ V Q+
Sbjct: 71 LRLVACAQN 79
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 34.4 bits (79), Expect = 0.004
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 82 SFDKDNSGNIDKLELKTALGT-FGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVMLN 140
S K N + + +LK L T + D+ K+ D + G + F +F+ + +
Sbjct: 20 SLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMG 79
Query: 141 LLTTSFSQHDEDKD 154
+ S + K+
Sbjct: 80 VAAHKKSHEESHKE 93
Score = 32.1 bits (73), Expect = 0.022
Identities = 11/92 (11%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 3 MPPP-----EFLRDIFQR--VDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDK 55
M + D++ + + + + ++L+ L + + + + D
Sbjct: 1 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDI 60
Query: 56 NNTGQISFEDFGALWKYVTDWQSCFKSFDKDN 87
N G ++F++F L + + K +++
Sbjct: 61 NTDGAVNFQEFLILVIKMG--VAAHKKSHEES 90
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 34.0 bits (78), Expect = 0.004
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMAL----SNGTWKPFNAETVRLMIGMFDKNNTGQ 60
E + +IF + V + +S EL+ L +N + + + D N Q
Sbjct: 12 EGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQ 71
Query: 61 ISFEDFGALWKYVTDWQSCFKSFDKD 86
+ F++F +L ++ K+
Sbjct: 72 VDFQEFISLVAIAL--KAAHYHTHKE 95
Score = 30.5 bits (69), Expect = 0.090
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 82 SFDKDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
S K + + K ELK L +D + + D + + F +FI
Sbjct: 22 SVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFI 78
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 34.1 bits (78), Expect = 0.005
Identities = 10/85 (11%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMAL----SNGTWKPFNAETVRLMIGMFDKNNTGQ 60
+ + F + ++ +EL+ L + K + + ++ D N +
Sbjct: 22 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNE 81
Query: 61 ISFEDFGALWKYVTDWQSCFKSFDK 85
+ F+++ + C + F+
Sbjct: 82 VDFQEYCVFLSCIA--MMCNEFFEG 104
Score = 32.6 bits (74), Expect = 0.020
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 82 SFDKDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
S + + ++K ELK L G R + LM D + + F ++
Sbjct: 32 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 88
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 34.0 bits (78), Expect = 0.006
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 77 QSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCC 136
+ F+S D S I K +L + + + D G + +F
Sbjct: 25 VNQFRSLQPDPSSFISGSVAKNFFTK--SKLSIPELSYIWELSDADCDGALTLPEFCAAF 82
Query: 137 VMLNL 141
++
Sbjct: 83 HLIVA 87
Score = 33.2 bits (76), Expect = 0.013
Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 2 AMPPPEFLR--DIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTG 59
+ + + F+ + D S IS + + + + + + + D + G
Sbjct: 15 RITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK---LSIPELSYIWELSDADCDG 71
Query: 60 QISFEDF 66
++ +F
Sbjct: 72 ALTLPEF 78
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 35.3 bits (80), Expect = 0.008
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
R F DR K+G++ + + L + + AE R+M + D N G ++F+ F
Sbjct: 727 FRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIM-SIVDPNRMGVVTFQAF 783
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 33.3 bits (76), Expect = 0.009
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMALS----NGTWKPFNAETVRLMIGMFDKNNTGQ 60
E L IFQ+ + IS E + ++ T + + M+ D ++ GQ
Sbjct: 13 ESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQ 72
Query: 61 ISFEDFGALWKYVTDWQSCFKSFDKDN 87
+ F++F L + +C SF K
Sbjct: 73 LDFQEFLNLIGGLA--IACHDSFIKST 97
Score = 28.3 bits (63), Expect = 0.54
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 82 SFDKDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
+ N+ I K E + T + +D +MKK D G + F +F+
Sbjct: 23 AGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFL 79
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 32.7 bits (75), Expect = 0.009
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 78 SCFKSFDKD--NSGNIDKLELKTALGT-FGYRLGD-NTVDILMKKFDHHGKGTILFDDFI 133
S F+ + + + K ELK + F L T+D L ++ D +G G + F++F
Sbjct: 11 SIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQ 70
Score = 31.9 bits (73), Expect = 0.017
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMAL-SNGTWKPFNAETVRLMIGMFDKNNTGQISF 63
L+ IF++ +S EL+ + + T+ + DKN G++SF
Sbjct: 7 AELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSF 66
Query: 64 EDF 66
E+F
Sbjct: 67 EEF 69
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 33.3 bits (76), Expect = 0.011
Identities = 9/83 (10%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNEL----QMALSNGTWKPFNAETVRLMIGMFDKNNTGQ 60
+ + F + ++ +EL L + K + + ++ D N +
Sbjct: 13 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNE 72
Query: 61 ISFEDFGALWKYVTDWQSCFKSF 83
+ F+++ + + F
Sbjct: 73 VDFQEYCVFLSSIA--MMSNEFF 93
Score = 32.2 bits (73), Expect = 0.025
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 82 SFDKDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
S + + ++K ELK L G R + LM D + + F ++
Sbjct: 23 SGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 79
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 32.8 bits (75), Expect = 0.011
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNEL----QMALSNGTWKPFNAETVRLMIGMFDKNNTGQ 60
L D+F + + +EL LS+ + E V ++ D N G+
Sbjct: 9 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGE 68
Query: 61 ISFEDFGALWKYVTDWQSCFKSFDKD 86
F++F A +T +C + F+ +
Sbjct: 69 CDFQEFMAFVAMIT--TACHEFFEHE 92
Score = 28.6 bits (64), Expect = 0.41
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 82 SFDKDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
S + + + K ELK + VD +M+ D +G G F +F+
Sbjct: 19 SGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFM 75
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 32.9 bits (75), Expect = 0.013
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMAL----SNGTWKPFNAETVRLMIGMFDKNNTGQ 60
+ L +F +S EL+ L ++ + V ++ D N +
Sbjct: 10 DALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNE 69
Query: 61 ISFEDFGALWKYVTDWQSCFKSFDKDN 87
+ F +F L +T +C F +
Sbjct: 70 VDFNEFVVLVAALT--VACNDFFQEQQ 94
Score = 30.6 bits (69), Expect = 0.092
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 82 SFDKDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCC 136
S + + + K ELK L + V+ +M D + + F++F+
Sbjct: 20 SGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLV 79
Query: 137 VMLNLLTTSFSQHDEDKDG 155
L + F Q + K
Sbjct: 80 AALTVACNDFFQEQQKKRS 98
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 32.0 bits (73), Expect = 0.022
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMAL-SNGTWKPFNAETVRLMIGMFDKNNTGQISF 63
+ F + +S EL+ + ++ ++ DKN+ +I F
Sbjct: 10 TTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDF 69
Query: 64 EDFGALWKYVTDWQSCFKSFDKDN 87
+++ + + F +DN
Sbjct: 70 KEYSVFLTMLC--MAYNDFFLEDN 91
Score = 29.3 bits (66), Expect = 0.19
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 82 SFDKDNSGNIDKLELKTALGT--FGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
S + + + + ELK + + ++++D LMK D + I F ++
Sbjct: 20 SGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYS 73
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 32.1 bits (73), Expect = 0.024
Identities = 10/83 (12%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMALSNG----TWKPFNAETVRLMIGMFDKNNTGQ 60
+ + F + ++ +EL+ L+ K + + ++ D N +
Sbjct: 10 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNE 69
Query: 61 ISFEDFGALWKYVTDWQSCFKSF 83
+ F+++ + C + F
Sbjct: 70 VDFQEYCVFLSCIA--MMCNEFF 90
Score = 31.7 bits (72), Expect = 0.025
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 82 SFDKDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
S + + ++K ELK L G R + LM D + + F ++
Sbjct: 20 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 76
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 31.7 bits (72), Expect = 0.036
Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 85 KDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139
+ + + K E+K L G ++ + + LM D + + F ++ ++
Sbjct: 24 EGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLALI 83
Query: 140 NLLTTSFSQHDEDK 153
+++ F Q D+
Sbjct: 84 TVMSNDFFQGSPDR 97
Score = 29.0 bits (65), Expect = 0.33
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 3 MPPP-----EFLRDIFQR--VDRDKSGLISTNELQMAL----SNGTWKPFNAETVRLMIG 51
M L F + +S E++ L + + + E ++ ++G
Sbjct: 2 MSSSLEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 61
Query: 52 MFDKNNTGQISFEDF 66
D+N+ Q+ F+++
Sbjct: 62 SLDENSDQQVDFQEY 76
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 31.7 bits (72), Expect = 0.036
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 7 EFLRDIFQR---VDRDKSGLISTNEL----QMALSNGTWKPFNAETVRLMIGMFDKNNTG 59
L + F + IS + Q L++ N + +I D N+ G
Sbjct: 11 IVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDG 70
Query: 60 QISFEDFGALWKYVTDWQSCFKSFDKDN 87
+ISF+++ L +T K +
Sbjct: 71 RISFDEYWTLIGGIT--GPIAKLIHEQE 96
Score = 30.2 bits (68), Expect = 0.13
Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 5/79 (6%)
Query: 80 FKSFDKDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFIH 134
+ S I K + L D L++ D + G I FD++
Sbjct: 20 YVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWT 79
Query: 135 CCVMLNLLTTSFSQHDEDK 153
+ E +
Sbjct: 80 LIGGITGPIAKLIHEQEQQ 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.037
Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 81/200 (40%)
Query: 1 MAM----PPPEFLRDIFQRVD---RDKSG-----LISTNELQMALSNGTWKPFNAETVR- 47
M M +D++ R D +D G ++ N + + + G K + +R
Sbjct: 1631 MGMDLYKTSKAA-QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK---GKRIRE 1686
Query: 48 -LMIGMFDKNNTGQISFEDFGALWKYVTDWQSCFKSFDKDNSGNI---DKLEL-KT---- 98
+F+ G++ E FK ++ ++ +K L T
Sbjct: 1687 NYSAMIFETIVDGKLKTEKI-------------FKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 99 -ALGTFGY---RLGDNTVDILMKKFDHHGKGTILFDDFI--H--------CC---VMLNL 141
AL +K KG I D H VM
Sbjct: 1734 PALTLMEKAAFE--------DLKS-----KGLIPADATFAGHSLGEYAALASLADVM--- 1777
Query: 142 LTTSFSQHDEDKDGVVTLHY 161
S V + Y
Sbjct: 1778 ---SIE------SLVEVVFY 1788
Score = 28.1 bits (62), Expect = 1.8
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 6 PEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMF 53
P LR + GL++ + +A + +W+ F + + +F
Sbjct: 260 PGELRSYLKGATGHSQGLVTA--VAIAET-DSWESFFVSVRKAITVLF 304
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 31.3 bits (71), Expect = 0.044
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMALS----NGTWKPFNAETVRLMIGMFDKNNTGQ 60
+ D+F R + ++ EL++ + + + V ++ D N Q
Sbjct: 9 GMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQ 68
Query: 61 ISFEDFGALWKYVTDWQSCFKSFDKDN 87
+ F +F +T +C K F+K
Sbjct: 69 VDFSEFIVFVAAIT--SACHKYFEKAG 93
Score = 29.0 bits (65), Expect = 0.26
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 82 SFDKDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
S + ++ + K ELK + + VD L+K D +G + F +FI
Sbjct: 19 SGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFI 75
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 32.4 bits (73), Expect = 0.053
Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 34/147 (23%)
Query: 9 LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDFGA 68
L I+ R++++ + L++ N ++ ++D TG+I F
Sbjct: 109 LTTIYDRLEQEHNNLVNVPLCVDMCLN------------WLLNVYDTGRTGRIRVLSFKT 156
Query: 69 LW------KYVTDWQSCFKSFDKDNSGNIDK----------LELKTALG---TFGYRLGD 109
++ FK ++G D+ +++ LG +FG +
Sbjct: 157 GIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIE 215
Query: 110 NTVDILMKKFDHHGKGTILFDDFIHCC 136
+V + + K I F+
Sbjct: 216 PSVRSCFQFA--NNKPEIEAALFLDWM 240
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 30.6 bits (69), Expect = 0.10
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMAL----SNGTWKP-FNAETVRLMIGMFDKNNTG 59
E + + F + V ++ E + + N K N + + ++ D N
Sbjct: 12 ETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADK 71
Query: 60 QISFEDFGALWKYVTDWQSCFKSFDKDNSG 89
Q+SFE+F L +T + + + + G
Sbjct: 72 QLSFEEFIMLMARLT--WASHEKMHEGDEG 99
Score = 29.5 bits (66), Expect = 0.24
Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 82 SFDKDNSGNIDKLELKTALGT------FGYRLGDNTVDILMKKFDHHGKGTILFDDFIHC 135
S + +++ E K + + ++ +M+ D + + F++FI
Sbjct: 22 SVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIML 81
Query: 136 CVMLNLLTTSFSQHDEDKDG 155
L + ++ G
Sbjct: 82 MARLTWASHEKMHEGDEGPG 101
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 30.1 bits (68), Expect = 0.11
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 85 KDNSGNIDKLELKTALGT---FGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
+ + + K ELK + G +L D + LM+ D + + F +++
Sbjct: 23 EGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYV 74
Score = 29.4 bits (66), Expect = 0.19
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMALSN--GTWKPFNAETVRLMIGMFDKNNTGQIS 62
L IF + +S EL+ + + ++ D+N +++
Sbjct: 10 GLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVN 69
Query: 63 FEDF 66
F+++
Sbjct: 70 FQEY 73
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 29.8 bits (67), Expect = 0.17
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 8/83 (9%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMAL----SNGTWKPFNAETVRLMIGMFDKNNTGQ 60
+ FQ + EL+ L + T F + + D N +
Sbjct: 10 AAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCE 69
Query: 61 ISFEDFGALWKYVTDWQSCFKSF 83
+ F ++ + C + F
Sbjct: 70 VDFVEYVRSLACLC--LYCHEYF 90
Score = 28.7 bits (64), Expect = 0.40
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 85 KDNSGNIDKLELKTALGT-----FGYRLGDNTVDILMKKFDHHGKGTILFDDFI 133
+ + + ELK L + + M D + + F +++
Sbjct: 23 CGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYV 76
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 29.0 bits (65), Expect = 0.29
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 82 SFDKDNSGNIDKLELKTALGT-FGYRLGD-NTVDILMKKFDHHGKGTILFDDFI 133
+ + ++ E K + + L D ++D MK D + + F+++
Sbjct: 32 ARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYW 85
Score = 27.1 bits (60), Expect = 1.3
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 7 EFLRDIFQR--VDRDKSGLISTNELQMAL-SNGTWKPFNAETVRLMIGMFDKNNTGQISF 63
E + F + +S NE + + + ++ + D N ++ F
Sbjct: 22 ETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKF 81
Query: 64 EDFGALWKYVTDWQSCFKSFDK 85
++ L + + K D
Sbjct: 82 NEYWRLIGELA--KEIRKKKDL 101
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 28.4 bits (63), Expect = 0.48
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 16/89 (17%)
Query: 80 FKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHCCVML 139
F D ++ G +D+ EL+ ++ + + + ++ L
Sbjct: 26 FILHDINSDGVLDEQELEALFT--------KELEKVYDPKNEEDDMREMEEE------RL 71
Query: 140 NLLTTSFSQHDEDKDGVVTLHYEQFLSMV 168
+ D ++D +VTL E+FL+
Sbjct: 72 RMREHVMKNVDTNQDRLVTL--EEFLAST 98
Score = 27.2 bits (60), Expect = 1.5
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 16/80 (20%)
Query: 3 MPPPEF-LRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNA------------ETVRLM 49
+ P F + F D + G++ EL+ + K ++ E +R+
Sbjct: 15 LDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMR 74
Query: 50 IGMF---DKNNTGQISFEDF 66
+ D N ++ E+F
Sbjct: 75 EHVMKNVDTNQDRLVTLEEF 94
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 29.2 bits (64), Expect = 0.57
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 7/103 (6%)
Query: 6 PEFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAET--VRLMIGMFDKN-NTGQIS 62
+ ++ + + I NE ++ + K +N V G D++ G +S
Sbjct: 115 RDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPEKNYNMYIFPVHWQFGQLDQHPIDGYLS 174
Query: 63 FEDFGALWKYVTDWQSCFKSF----DKDNSGNIDKLELKTALG 101
+ L + + C F D DN I E G
Sbjct: 175 HTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 217
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand
binding protein; 1.78A {Synechocystis SP} SCOP:
a.118.1.22 a.261.1.1
Length = 233
Score = 29.0 bits (64), Expect = 0.67
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 16/85 (18%)
Query: 24 ISTNELQMALSNGTWKPFNAETVRLMIGM--FDKNNTGQISFEDFGALWKYVTDWQSCFK 81
I LQ AL + ++ + T + + + + F +
Sbjct: 91 IDYLPLQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKF--------PA-- 140
Query: 82 SFDKDNSGNIDKLELKTALGTFGYR 106
+ I+ L + G FG+
Sbjct: 141 ----LDLHTINALWWLHSNGNFGFS 161
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 27.8 bits (62), Expect = 0.70
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 9/87 (10%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSN------GTWKPFNAETVRLMIGMFDKNNTGQ 60
+ D+F + + I L + + + DKN +
Sbjct: 10 IGMIDMFHK-YTRRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKK 68
Query: 61 ISFEDFGALWKYVTDWQSCFKSFDKDN 87
I F +F +L + K
Sbjct: 69 IDFSEFLSLLGDIA--TDYHKQSHGAA 93
Score = 26.7 bits (59), Expect = 1.8
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 86 DNSGNIDKLELK----TALGTFGYRLGD---NTVDILMKKFDHHGKGTILFDDFI 133
IDK L F N + + +K D + I F +F+
Sbjct: 21 RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFL 75
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 27.1 bits (60), Expect = 1.8
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 76 WQSCFKSFDKDNSGNIDKLELKTALGTFGYRLGDNTVDILMKKFDHHGKGTILFDDFIHC 135
+ + F S +G + ++K L +L + + + + D G + D+F
Sbjct: 17 YDAIFDSLS-PVNGFLSGDKVKPVLLN--SKLPVDILGRVWELSDIDHDGMLDRDEFAVA 73
Query: 136 CVMLNL 141
++
Sbjct: 74 MFLVYC 79
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A
{Thermosynechococcus elongatus} SCOP: a.118.1.22
a.261.1.1 PDB: 1z3y_A
Length = 238
Score = 27.8 bits (61), Expect = 1.9
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 18/109 (16%)
Query: 4 PPPEFLRDIFQRVDRDKSGLISTN------ELQMALSNGTWKPFNAETVRLMIGMFDKNN 57
P ++ Q+ + ++ EL L ++ + T + + +
Sbjct: 73 SPEASVQAFLQQHYPQGVIPLRSDRGVDYQELAKLLVAEKFEAADRLTTQKLCELAGPLA 132
Query: 58 TGQISFEDFGALWKYVTDWQSCFKSFDKDNSGNIDKLELKTALGTFGYR 106
+ W Y T+ + + ID+L L +LG FGY
Sbjct: 133 QKRR--------WLYFTE----VEQLPIPDLQTIDQLWLAFSLGRFGYS 169
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 26.5 bits (58), Expect = 3.0
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 7 EFLRDIFQRVDRDKSGLISTNELQMALSNGTWKPFNAETVRLMIGMFDKNNTGQISFEDF 66
E L+ I +++D DK G I E + I+ ED
Sbjct: 15 EALQTIHKQMDDDKDGGIEVEESDEFIREDMKYKDATNKHS-----HLHREDKHITIEDL 69
Query: 67 GALWK 71
WK
Sbjct: 70 WKRWK 74
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 26.4 bits (58), Expect = 5.7
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 1 MAMPPPEFLRDIFQRVDR 18
M M P F R +
Sbjct: 610 MHMVDPLFQRVLVNECRN 627
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 25.6 bits (57), Expect = 10.0
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 122 HGKGTILFDDFIH 134
G+ TILF D +H
Sbjct: 104 AGRRTILFVDEVH 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.429
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,769,957
Number of extensions: 155823
Number of successful extensions: 1733
Number of sequences better than 10.0: 1
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 442
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.5 bits)